a.16.c.C.coccineum.fasta -------------------------------------------------- a.16.c.C.ruber.fasta -------------------------------------------------- d.16.c.N.tabacum.fasta -------------------------------------------------- d.16.c.S.oleracea.fasta -------------------------------------------------- d.16.c.Z.mays.fasta -------------------------------------------------- d.16.c.M.polymorpha.fasta -------------------------------------------------- d.16.c.R.communis.fasta -------------------------------------------------- d.16.c.C.vulgaris.fasta -------------------------------------------------- d.16.c.P.wickerhamii.fasta -------------------------------------------------- d.16.c.P.minor.fasta -------------------------------------------------- d.16.c.N.olivacea.fasta -------------------------------------------------- d.16.c.P.parkeae.fasta -------------------------------------------------- d.16.c.C.reinhardtii.fasta -------------------------------------------------- b.16.m.A.castellanii.fasta -------------------------------------------------- d.16.c.P.thurberi.fasta -------------------------------------------------- b.16.m.C.crispus.fasta -------------------------------------------------- d.16.c.T.gondii.fasta -------------------------------------------------- b.16.m.N.crassa.fasta -------------------------------------------------- b.16.m.P.anserina.fasta -------------------------------------------------- b.16.m.P.chrysogenum.fasta -------------------------------------------------- b.16.m.E.nidulans.fasta -------------------------------------------------- b.16.m.S.cerevisiae.fasta -------------------------------------------------- b.16.m.W.saturnus.m.fasta -------------------------------------------------- b.16.m.P.minor.fasta -------------------------------------------------- d.16.c.P.falciparum.fasta -------------------------------------------------- d.16.c.B.bovis.fasta -------------------------------------------------- b.16.m.T.pyriformis.fasta -------------------------------------------------- d.16.m.S.sinuspaulianus.fasta -------------------------------------------------- b.16.m.P.tetraurelia.fasta -------------------------------------------------- b.16.m.D.discoideum.fasta -------------------------------------------------- d.16.m.P.polycephalum.fasta -------------------------------------------------- b.16.m.P.littoralis.fasta -------------------------------------------------- b.16.m.P.wickerhamii.fasta -------------------------------------------------- d.16.c.H.africana.fasta -------------------------------------------------- d.16.c.C.fragile.fasta -------------------------------------------------- d.16.c.C.sertularioides.fasta -------------------------------------------------- d.16.c.C.humicola.fasta -------------------------------------------------- d.16.c.P.uvella.fasta -------------------------------------------------- a.16.c.G.nostochinearum.fasta -------------------------------------------------- a.16.c.G.wittrockiana.fasta -------------------------------------------------- d.16.c.C.paradoxa.fasta -------------------------------------------------- d.16.y.C.paradoxa.fasta -------------------------------------------------- d.16.c.Cryptomonas.sp.fasta -------------------------------------------------- d.16.c.P.palmata.fasta -------------------------------------------------- d.16.c.H.akashiwo.fasta -------------------------------------------------- d.16.c.S.pseudocostatum.fasta -------------------------------------------------- d.16.c.P.littoralis.fasta -------------------------------------------------- d.16.c.C.caldarium.fasta -------------------------------------------------- a.16.c.E.huxleyi.fasta -------------------------------------------------- d.16.c.E.gracilis.fasta -------------------------------------------------- d.16.b.Anabaena.sp.fasta -------------------------------------------------- d.16.b.Chlorogloeopsis.PCC7518 -------------------------------------------------- d.16.b.Synechococcus.sp.fasta -------------------------------------------------- d.16.b.Synechocystis.PCC6803.G -------------------------------------------------- d.16.b.O.agardhii.fasta -------------------------------------------------- d.16.b.Pleurocapsa.7516.fasta -------------------------------------------------- d.16.b.M.aeruginosa.fasta -------------------------------------------------- b.16.m.C.reinhardtii.fasta -------------------------------------------------- d.16.m.C.eugametos.fasta -------------------------------------------------- b.16.m.M.senile.fasta -------------------------------------------------- d.16.b.S.pneumoniae.fasta -------------------------------------------------- d.16.b.S.pyogenes.fasta -------------------------------------------------- d.16.b.B.anthracis.fasta -------------------------------------------------- d.16.b.B.cereus.1.fasta -------------------------------------------------- d.16.b.E.faecalis.fasta -------------------------------------------------- d.16.b.E.faecium2.fasta -------------------------------------------------- d.16.b.L.monocytogenes.fasta -------------------------------------------------- d.16.b.B.subtilis.fasta -------------------------------------------------- d.16.b.B.subtilis.GEN.fasta -------------------------------------------------- d.16.b.B.halodurans.fasta -------------------------------------------------- d.16.b.S.aureus.fasta -------------------------------------------------- d.16.b.S.aureus.GEN.fasta -------------------------------------------------- d.16.b.L.lactis.GEN.fasta -------------------------------------------------- d.16.b.S.pyogenes.GEN.fasta -------------------------------------------------- d.16.b.L.acidophilus.fasta -------------------------------------------------- d.16.b.M.capricolum.fasta -------------------------------------------------- d.16.b.M.mycoides.fasta -------------------------------------------------- d.16.b.E.rhusiopathiae.fasta -------------------------------------------------- d.16.b.C.innocuum.fasta -------------------------------------------------- d.16.b.M.genitalium.fasta -------------------------------------------------- d.16.b.M.pneumoniae.GEN.fasta -------------------------------------------------- d.16.b.M.pneumoniae.fasta -------------------------------------------------- d.16.b.M.gallisepticum.fasta -------------------------------------------------- d.16.b.U.urealyticum.fasta -------------------------------------------------- d.16.b.U.urealyticum.GEN.fasta -------------------------------------------------- d.16.b.M.hyopneumoniae.fasta -------------------------------------------------- d.16.b.F.necrophorum.fasta -------------------------------------------------- d.16.b.F.nucleatum.fasta -------------------------------------------------- d.16.b.S.moniliformis.fasta -------------------------------------------------- d.16.b.C.botulinum.F.fasta -------------------------------------------------- d.16.b.C.tetani.fasta -------------------------------------------------- d.16.b.C.perfringens.fasta -------------------------------------------------- d.16.b.C.difficile.fasta -------------------------------------------------- d.16.b.E.brachy.fasta -------------------------------------------------- d.16.b.Epulopiscium.sp.fasta -------------------------------------------------- d.16.b.H.chlorum.fasta -------------------------------------------------- b.16.m.G.max.fasta -------------------------------------------------- b.16.m.O.berteriana.fasta -------------------------------------------------- b.16.m.S.cereale.fasta -------------------------------------------------- b.16.m.T.aestivum.fasta -------------------------------------------------- d.16.m.Z.mays.fasta -------------------------------------------------- b.16.m.M.polymorpha.fasta -------------------------------------------------- b.16.m.N.olivacea.fasta -------------------------------------------------- d.16.b.G.liquefaciens.fasta -------------------------------------------------- d.16.b.B.japonicum.fasta -------------------------------------------------- d.16.b.R.acidophilus.fasta -------------------------------------------------- d.16.b.A.caulinodans.fasta -------------------------------------------------- d.16.b.B.quintana.fasta -------------------------------------------------- d.16.b.M.loti.fasta -------------------------------------------------- d.16.b.A.tumefaciens.fasta -------------------------------------------------- d.16.b.B.bacilliformis.fasta -------------------------------------------------- d.16.b.B.henselae.fasta -------------------------------------------------- d.16.b.B.melitensis.fasta -------------------------------------------------- d.16.b.R.orientis.fasta -------------------------------------------------- d.16.b.Methylobacterium.sp.fas -------------------------------------------------- d.16.b.R.bellii.fasta -------------------------------------------------- d.16.b.R.felis.URRWXCal2.fasta -------------------------------------------------- d.16.b.R.prowazekii.fasta -------------------------------------------------- d.16.b.R.prowazekii.GEN.fasta -------------------------------------------------- d.16.b.R.rickettsii.fasta -------------------------------------------------- d.16.b.A.calcoaceticus.fasta -------------------------------------------------- d.16.b.P.pacificensis.fasta -------------------------------------------------- d.16.b.C.marismortui.fasta -------------------------------------------------- d.16.b.H.halodenitrificans.fas -------------------------------------------------- d.16.b.P.aeruginosa.fasta -------------------------------------------------- d.16.b.P.aeruginosa.GEN.fasta -------------------------------------------------- d.16.b.Pseudomonas.sp.fasta -------------------------------------------------- d.16.b.P.putida.fasta -------------------------------------------------- d.16.b.C.burnetii.fasta -------------------------------------------------- d.16.b.M.capsulatus.fasta -------------------------------------------------- d.16.b.L.pneumophila.1.fasta -------------------------------------------------- d.16.b.L.pneumophila.2.fasta -------------------------------------------------- d.16.b.A.vinosum.fasta -------------------------------------------------- d.16.b.Beggiatoa.sp.fasta -------------------------------------------------- d.16.b.A.hydrophila.fasta -------------------------------------------------- d.16.b.S.putrefaciens.fasta -------------------------------------------------- d.16.b.C.freundii.fasta -------------------------------------------------- d.16.b.S.dysenteriae.1.fasta -------------------------------------------------- d.16.b.K.pneumoniae.fasta -------------------------------------------------- d.16.b.P.shigelloides.fasta -------------------------------------------------- d.16.b.Y.pestis.fasta -------------------------------------------------- d.16.b.Y.pseudotuberculosis.fa -------------------------------------------------- d.16.b.S.dysenteriae.2.fasta -------------------------------------------------- d.16.b.E.coli.0157G.GEN.fasta -------------------------------------------------- d.16.b.E.coli.EDL.GEN.fasta -------------------------------------------------- d.16.b.E.coli.fasta -------------------------------------------------- d.16.b.E.coli.K12.GEN.fasta -------------------------------------------------- h.16.b.E.coli.hlxnum.fasta -------------------------------------------------- m.16.b.E.coli.mhg.fasta -------------------------------------------------- s.16.b.E.coli.schem.fasta -------------------------------------------------- d.16.b.S.typhimurium.fasta -------------------------------------------------- d.16.b.S.marcescens.fasta -------------------------------------------------- d.16.b.E.tarda.fasta -------------------------------------------------- d.16.b.P.vulgaris.fasta -------------------------------------------------- d.16.b.V.cholerae4.fasta -------------------------------------------------- d.16.b.V.cholerae5.fasta -------------------------------------------------- d.16.b.V.cholerae2.fasta -------------------------------------------------- d.16.b.V.cholerae6.fasta -------------------------------------------------- d.16.b.V.cholerae.fasta -------------------------------------------------- d.16.b.V.cholerae.GEN.fasta -------------------------------------------------- d.16.b.V.parahaemolyticus.fast -------------------------------------------------- d.16.b.H.influenzae7.fasta -------------------------------------------------- d.16.b.H.influenzae8.fasta -------------------------------------------------- d.16.b.H.influenzae6.fasta -------------------------------------------------- d.16.b.H.influenz.fasta -------------------------------------------------- d.16.b.H.influenzae.fasta -------------------------------------------------- d.16.b.P.multocida.fasta -------------------------------------------------- d.16.b.P.multocida.GEN.fasta -------------------------------------------------- d.16.b.X.albilineans.fasta -------------------------------------------------- d.16.b.X.campestris.fasta -------------------------------------------------- d.16.b.X.fastidiosa.GEN.fasta -------------------------------------------------- d.16.b.D.nodosus.fasta -------------------------------------------------- d.16.b.F.tularensis.fasta -------------------------------------------------- d.16.b.B.parapertussis.fasta -------------------------------------------------- d.16.b.B.pertussis.fasta -------------------------------------------------- d.16.b.B.bronchiseptica2.fasta -------------------------------------------------- d.16.b.u.proteobacterium.fasta -------------------------------------------------- d.16.b.B.mallei.fasta -------------------------------------------------- d.16.b.Burkholderia.sp.fasta -------------------------------------------------- d.16.b.N.meningitidis.MD58.GEN -------------------------------------------------- d.16.b.N.meningitidis.Z2491.GE -------------------------------------------------- d.16.b.N.gonorrhoeae.fasta -------------------------------------------------- d.16.b.C.testosteroni.fasta -------------------------------------------------- d.16.b.D.desulfuricans.fasta -------------------------------------------------- d.16.b.M.xanthus.fasta -------------------------------------------------- d.16.b.D.thermophilus.fasta -------------------------------------------------- d.16.b.B.burgdorferi.fasta -------------------------------------------------- d.16.b.B.burgdorferi.GEN.fasta -------------------------------------------------- d.16.b.B.hermsii.fasta -------------------------------------------------- d.16.b.S.aurantia.fasta -------------------------------------------------- d.16.b.T.pallidum.A.fasta -------------------------------------------------- d.16.b.L.illini.fasta -------------------------------------------------- d.16.b.L.interrogans.fasta -------------------------------------------------- d.16.b.C.trachomatis.GEN.fasta -------------------------------------------------- d.16.b.C.trachomatis.L2.fasta -------------------------------------------------- d.16.b.C.muridarum.fasta -------------------------------------------------- d.16.b.C.pneumoniae.AR39.fasta -------------------------------------------------- d.16.b.C.pneumoniae.fasta -------------------------------------------------- d.16.b.C.pneumoniae.J138.fasta -------------------------------------------------- d.16.b.C.pneumoniae.CWL029.fas -------------------------------------------------- d.16.b.C.psittaci.fasta -------------------------------------------------- d.16.b.D.radiodurans.1.fasta -------------------------------------------------- d.16.b.D.radiodurans.GEN.fasta -------------------------------------------------- d.16.b.B.fragilis.fasta -------------------------------------------------- d.16.b.P.gingivalis.fasta -------------------------------------------------- d.16.b.C.vibrioforme.fasta -------------------------------------------------- d.16.b.C.jejuni.fasta -------------------------------------------------- d.16.b.C.jejuni.GEN.fasta -------------------------------------------------- d.16.b.C.sputorum.fasta -------------------------------------------------- d.16.b.H.pylori.26695.GEN.fast -------------------------------------------------- d.16.b.H.pylori.J99.GEN.fasta -------------------------------------------------- d.16.b.H.pylori2.fasta -------------------------------------------------- d.16.b.A.capsulatum.fasta -------------------------------------------------- d.16.b.H.foetida.fasta -------------------------------------------------- d.16.b.A.globiformis.fasta -------------------------------------------------- d.16.b.M.luteus.fasta -------------------------------------------------- d.16.b.Frankia.sp.fasta -------------------------------------------------- d.16.b.S.bottropensis.fasta -------------------------------------------------- d.16.b.S.scabiei.fasta -------------------------------------------------- d.16.b.S.neyagawaensis.fasta -------------------------------------------------- d.16.b.S.diastatochromogenes.f -------------------------------------------------- d.16.b.Streptomyces.sp.fasta -------------------------------------------------- d.16.b.S.acidiscabies.fasta -------------------------------------------------- d.16.b.S.griseus.fasta -------------------------------------------------- d.16.b.S.ornatus.fasta -------------------------------------------------- d.16.b.S.subrutilus.fasta -------------------------------------------------- d.16.b.S.bikiniensis.fasta -------------------------------------------------- d.16.b.S.galbus.fasta -------------------------------------------------- d.16.b.S.hygroscopicus.fasta -------------------------------------------------- d.16.b.S.lincolnensis.fasta -------------------------------------------------- d.16.b.S.coelicolor.fasta -------------------------------------------------- d.16.b.S.tendae.fasta -------------------------------------------------- d.16.b.S.ambofaciens.fasta -------------------------------------------------- d.16.b.S.eurythermus.fasta -------------------------------------------------- d.16.b.S.nodosus.fasta -------------------------------------------------- d.16.b.S.sampsonii.fasta -------------------------------------------------- d.16.b.S.glaucescens.fasta -------------------------------------------------- d.16.b.S.pseudogriseolus.fasta -------------------------------------------------- d.16.b.S.caelestis.fasta -------------------------------------------------- d.16.b.S.bluensis.fasta -------------------------------------------------- d.16.b.S.espinosus.fasta -------------------------------------------------- d.16.b.S.mashuensis.fasta -------------------------------------------------- d.16.b.S.rimosus.fasta -------------------------------------------------- d.16.b.S.limosus.fasta -------------------------------------------------- d.16.b.S.odorifer.fasta -------------------------------------------------- d.16.b.S.felleus.fasta -------------------------------------------------- d.16.b.S.albidoflavus.fasta -------------------------------------------------- d.16.b.S.gougerotii.fasta -------------------------------------------------- d.16.b.S.rutgersensis.fasta -------------------------------------------------- d.16.b.S.intermedius.fasta -------------------------------------------------- d.16.b.S.thermodiastaticus.fas -------------------------------------------------- d.16.b.S.thermoviolaceus.fasta -------------------------------------------------- d.16.b.S.thermovulgaris.1.fast -------------------------------------------------- d.16.b.S.thermovulgaris.2.fast -------------------------------------------------- d.16.b.S.macrosporus.fasta -------------------------------------------------- d.16.b.S.megasporus.fasta -------------------------------------------------- d.16.b.S.thermolineatus.fasta -------------------------------------------------- d.16.b.M.tuberculosis.2.fasta -------------------------------------------------- d.16.b.M.tuberculosis.3.fasta -------------------------------------------------- d.16.b.M.avium.fasta -------------------------------------------------- d.16.b.M.leprae.fasta -------------------------------------------------- d.16.b.M.leprae.GEN.fasta -------------------------------------------------- d.16.b.M.tuberculosis.CDC1551. -------------------------------------------------- d.16.b.M.tuberculosis.GEN.fast -------------------------------------------------- d.16.b.N.asteroides.fasta -------------------------------------------------- d.16.b.R.erythropolis.fasta -------------------------------------------------- d.16.b.C.diphtheriae.fasta -------------------------------------------------- d.16.b.A.israelii.fasta -------------------------------------------------- d.16.b.B.hyodysenteriae.fasta -------------------------------------------------- d.16.b.G.subterranea.fasta -------------------------------------------------- d.16.b.P.miotherma.fasta -------------------------------------------------- d.16.b.B.andersonii.fasta -------------------------------------------------- d.16.b.H.aurantiacus.fasta -------------------------------------------------- d.16.b.Leptospirillium.sp.fast -------------------------------------------------- d.16.b.A.aeolicus.fasta -------------------------------------------------- d.16.b.A.pyrophilus.fasta -------------------------------------------------- d.16.b.T.maritima.fasta -------------------------------------------------- d.16.b.T.maritima.GEN.fasta -------------------------------------------------- n.16.b.T.thermophilus.2.num.fa -------------------------------------------------- s.16.b.T.thermophilus.2.schem. -------------------------------------------------- d.16.b.T.thermophilus.2.fasta -------------------------------------------------- s.16.b.T.thermophilus.1.schem. -------------------------------------------------- n.16.b.T.thermophilus.1.num.fa -------------------------------------------------- d.16.b.T.thermophilus.1.fasta -------------------------------------------------- d.16.b.T.aquaticus.fasta -------------------------------------------------- d.16.b.T.roseum.fasta -------------------------------------------------- d.16.b.P.marina.fasta -------------------------------------------------- d.16.b.P.staleyi.fasta -------------------------------------------------- d.16.b.P.Schlesner.fasta -------------------------------------------------- d.16.b.G.obscuriglobus.1.fasta -------------------------------------------------- d.16.b.I.pallida.fasta -------------------------------------------------- d.16.a.P.abyssi.fasta -------------------------------------------------- d.16.a.P.horikoshii.fasta -------------------------------------------------- d.16.a.P.furiosus.fasta -------------------------------------------------- d.16.a.T.celer.fasta -------------------------------------------------- d.16.a.A.fulgidus.fasta -------------------------------------------------- d.16.a.N.equitans.fasta -------------------------------------------------- d.16.a.A.pernix.K1.fasta -------------------------------------------------- d.16.a.P.occultum.fasta -------------------------------------------------- d.16.a.T.tenax.fasta -------------------------------------------------- d.16.a.S.acidocaldarius.fasta -------------------------------------------------- d.16.a.S.solfataricus.fasta -------------------------------------------------- d.16.a.S.solfataricus.2.fasta -------------------------------------------------- d.16.a.M.thermautotrophicus.1. -------------------------------------------------- d.16.a.M.thermautotrophicus.2. -------------------------------------------------- d.16.a.M.formicicum.fasta -------------------------------------------------- d.16.a.M.vannielii.fasta -------------------------------------------------- d.16.a.H.marismortui.rrnA.fast -------------------------------------------------- d.16.a.H.marismortui.rrnB.fast -------------------------------------------------- d.16.a.Halobacterium.sp.fasta -------------------------------------------------- d.16.a.N.bangense.fasta -------------------------------------------------- d.16.a.N.innermongoliae.fasta -------------------------------------------------- d.16.a.H.volcanii.fasta -------------------------------------------------- d.16.a.M.hungatei.fasta -------------------------------------------------- d.16.a.P.torridus.fasta -------------------------------------------------- d.16.a.T.acidophilum.fasta -------------------------------------------------- a.16.e.G.ardeae.fasta -------------------------------------------------- d.16.e.G.intestinalis.fasta -------------------------------------------------- a.16.e.G.muris.fasta -------------------------------------------------- d.16.e.A.bracteata.fasta -------------------------------------------------- d.16.e.Glomus.sp.W3349.fasta -------------------------------------------------- d.16.e.S.cerradensis.fasta -------------------------------------------------- a.16.e.G.intraradices.fasta -------------------------------------------------- d.16.e.S.culisetae.fasta -------------------------------------------------- a.16.e.P.balamuthi.fasta AACCCGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUGUUAAAGAUUAAGCC d.16.e.A.flavus.fasta -------------------------------------------------- d.16.e.T.caries.fasta -------------------------------------------------- d.16.e.M.circinelloides.fasta -------------------------------------------------- d.16.e.M.racemosus.fasta -------------------------------------------------- d.16.e.R.oryzae.fasta -------------------------------------------------- a.16.e.M.edulis.fasta -------------------------------------------------- a.16.e.P.magellanicus.fasta -------------------------------------------------- b.16.e.E.granulosus.fasta -------------------------------------------------- d.16.e.D.melanogaster.fasta -------------------------------------------------- b.16.e.C.koreana.fasta -------------------------------------------------- b.16.e.A.australis.fasta -------------------------------------------------- b.16.e.O.utahensis.fasta -------------------------------------------------- b.16.e.A.salina.fasta -------------------------------------------------- d.16.e.M.musculus.fasta -------------------------------------------------- d.16.e.R.norvegicus.fasta -------------------------------------------------- d.16.e.H.sapiens.fasta -------------------------------------------------- d.16.e.O.cuniculus.fasta -------------------------------------------------- d.16.e.X.borealis.fasta -------------------------------------------------- d.16.e.X.laevis.fasta -------------------------------------------------- d.16.e.A.castellanii.fasta -------------------------------------------------- d.16.e.B.mandrillaris.fasta -------------------------------------------------- d.16.e.P.falciparum.A.fasta -------------------------------------------------- d.16.e.P.falciparum.S.fasta -------------------------------------------------- d.16.e.P.vivax.A.fasta -------------------------------------------------- d.16.e.P.vivax.O.fasta -------------------------------------------------- d.16.e.P.vivax.S.fasta -------------------------------------------------- d.16.e.E.histolytica.fasta -------------------------------------------------- d.16.e.I.hoferi.fasta -------------------------------------------------- d.16.e.Dermocystidium.sp.fasta -------------------------------------------------- d.16.e.S.destruens.fasta -------------------------------------------------- d.16.e.A.unguiculata.fasta -------------------------------------------------- d.16.e.D.grandis.fasta -------------------------------------------------- d.16.e.A.macrogynus.fasta -------------------------------------------------- d.16.e.B.emersonii.fasta -------------------------------------------------- d.16.e.C.albicans.fasta -------------------------------------------------- d.16.e.S.cerevisiae.fasta -------------------------------------------------- d.16.e.N.crassa.fasta -------------------------------------------------- d.16.e.P.anserina.fasta -------------------------------------------------- d.16.e.C.immitis.fasta -------------------------------------------------- d.16.e.L.major.fasta -------------------------------------------------- d.16.e.T.cruzi.fasta -------------------------------------------------- d.16.e.T.brucei.fasta -------------------------------------------------- d.16.e.P.carinii.fasta -------------------------------------------------- d.16.e.C.neoformans.fasta -------------------------------------------------- d.16.e.Fungus.sp.QPX.fasta -------------------------------------------------- d.16.e.U.maydis.fasta -------------------------------------------------- d.16.e.M.leidyi.fasta -------------------------------------------------- d.16.e.T.cystophora.fasta -------------------------------------------------- d.16.e.M.prolifera.fasta -------------------------------------------------- d.16.e.P.haeckeli.fasta -------------------------------------------------- d.16.e.E.rotunda.fasta -------------------------------------------------- d.16.e.P.chromatophora.fasta -------------------------------------------------- d.16.e.A.majus.fasta -------------------------------------------------- d.16.e.S.indicum.fasta -------------------------------------------------- d.16.e.D.grandiflora.fasta -------------------------------------------------- d.16.e.Pla.lanceolata.fasta -------------------------------------------------- d.16.e.N.tabacum.fasta -------------------------------------------------- d.16.e.A.thaliana.fasta -------------------------------------------------- d.16.e.S.alba.fasta -------------------------------------------------- d.16.e.S.tuberosum.fasta -------------------------------------------------- d.16.e.F.x.ananassa.fasta -------------------------------------------------- d.16.e.G.max.fasta -------------------------------------------------- d.16.e.O.sativa.fasta -------------------------------------------------- d.16.e.Z.mays.fasta -------------------------------------------------- d.16.e.A.verticilliflorum.fast -------------------------------------------------- d.16.e.G.spirotaenia.fasta -------------------------------------------------- d.16.e.Staurastrum.sp.M752.fas -------------------------------------------------- d.16.e.C.paradoxa.fasta -------------------------------------------------- d.16.e.G.nostochinearum.fasta -------------------------------------------------- d.16.e.G.wittrockiana.fasta -------------------------------------------------- d.16.e.C.luteoviridis.fasta -------------------------------------------------- d.16.e.O.longa.fasta -------------------------------------------------- d.16.e.P.weissei.fasta -------------------------------------------------- d.16.e.C.citrina.fasta -------------------------------------------------- d.16.e.G.steinii.fasta -------------------------------------------------- d.16.e.Ple.lanceolata.fasta -------------------------------------------------- d.16.e.O.quadricornutus.fasta -------------------------------------------------- d.16.e.S.lemnae.fasta -------------------------------------------------- d.16.e.S.mytilus.fasta -------------------------------------------------- d.16.e.E.mobilis.fasta -------------------------------------------------- d.16.e.O.granulifera.1.fasta -------------------------------------------------- d.16.e.O.granulifera.2.fasta -------------------------------------------------- d.16.e.U.gallina.fasta -------------------------------------------------- d.16.e.U.pisces.fasta -------------------------------------------------- d.16.e.P.lepisma.fasta -------------------------------------------------- d.16.e.U.grandis.fasta -------------------------------------------------- d.16.e.B.coli.fasta -------------------------------------------------- d.16.e.E.aediculatus.fasta -------------------------------------------------- d.16.e.T.thermophila.fasta -------------------------------------------------- d.16.e.Bangia.sp.NWT.fasta -------------------------------------------------- d.16.e.Bangia.sp.VIS7.fasta -------------------------------------------------- d.16.e.E.carnea.fasta -------------------------------------------------- d.16.e.R.parvula.fasta -------------------------------------------------- d.16.e.C.coeruleus.fasta -------------------------------------------------- d.16.e.P.aerugineum.1.fasta -------------------------------------------------- d.16.e.R.maculata.fasta -------------------------------------------------- d.16.e.A.ambigua.fasta -------------------------------------------------- d.16.e.A.baicalensis.fasta -------------------------------------------------- d.16.e.S.nipponica.fasta -------------------------------------------------- d.16.e.C.radiatus.fasta -------------------------------------------------- d.16.e.C.criophilum.fasta -------------------------------------------------- d.16.e.A.capitellata.fasta -------------------------------------------------- d.16.e.S.pupula.fasta -------------------------------------------------- d.16.e.T.antarctica.fasta -------------------------------------------------- d.16.e.E.triangulatum.fasta -------------------------------------------------- d.16.e.A.bongranii.fasta -------------------------------------------------- d.16.e.Pseudogomphonema.sp.fas -------------------------------------------------- d.16.e.D.tenue.fasta -------------------------------------------------- d.16.e.G.marina.fasta -------------------------------------------------- d.16.e.Thalassionema.sp.fasta -------------------------------------------------- d.16.e.R.belgicae.fasta -------------------------------------------------- d.16.e.Undatella.sp.fasta -------------------------------------------------- d.16.e.C.belgica.fasta -------------------------------------------------- d.16.e.O.sinensis.fasta -------------------------------------------------- d.16.e.D.brightwellii.fasta -------------------------------------------------- d.16.e.L.undulatum.fasta -------------------------------------------------- d.16.e.T.eccentrica.fasta -------------------------------------------------- d.16.e.T.pseudonana.fasta -------------------------------------------------- d.16.e.S.costatum.fasta -------------------------------------------------- d.16.e.P.laevis.fasta -------------------------------------------------- d.16.e.L.borealis.fasta -------------------------------------------------- d.16.e.P.pseudodenticulata.fas -------------------------------------------------- d.16.e.B.mediterranea.fasta -------------------------------------------------- d.16.e.B.pacifica.fasta -------------------------------------------------- d.16.e.L.minuta.fasta -------------------------------------------------- d.16.e.L.danicus.fasta -------------------------------------------------- d.16.e.Chaetoceros.sp.fasta -------------------------------------------------- d.16.e.A.invadans.fasta -------------------------------------------------- d.16.e.L.giganteum.fasta -------------------------------------------------- d.16.e.M.varians.fasta -------------------------------------------------- d.16.e.B.hominis.fasta -------------------------------------------------- d.16.e.P.marinus.fasta -------------------------------------------------- d.16.e.T.gondii.fasta -------------------------------------------------- d.16.e.A.fundyense.fasta -------------------------------------------------- d.16.e.B.bigemina.fasta -------------------------------------------------- d.16.e.B.canis.fasta -------------------------------------------------- d.16.e.Babesia.sp.OKD.fasta -------------------------------------------------- d.16.e.B.microti.1.fasta -------------------------------------------------- d.16.e.B.microti.2.fasta -------------------------------------------------- d.16.e.B.microti.3.fasta -------------------------------------------------- d.16.e.B.microti.4.fasta -------------------------------------------------- d.16.e.B.microti.5.fasta -------------------------------------------------- d.16.e.B.rodhaini.fasta -------------------------------------------------- d.16.e.B.gibsoni.fasta -------------------------------------------------- d.16.e.B.bovis.fasta -------------------------------------------------- d.16.e.J.libera.fasta -------------------------------------------------- d.16.e.R.americana.fasta -------------------------------------------------- d.16.e.B.ostreae.fasta -------------------------------------------------- d.16.e.A.dasyae.fasta -------------------------------------------------- d.16.e.A.hermannii.fasta -------------------------------------------------- d.16.e.N.helminthoides.fasta -------------------------------------------------- d.16.e.B.gelatinosum.fasta -------------------------------------------------- d.16.e.N.tortuosa.fasta -------------------------------------------------- d.16.e.T.hispida.fasta -------------------------------------------------- d.16.e.T.violacea.4.fasta -------------------------------------------------- d.16.e.T.violacea.1.fasta -------------------------------------------------- d.16.e.T.violacea.2.fasta -------------------------------------------------- d.16.e.N.shawii.fasta -------------------------------------------------- d.16.e.B.investiens.fasta -------------------------------------------------- d.16.e.B.macrosporum.fasta -------------------------------------------------- d.16.e.A.plicata.fasta -------------------------------------------------- d.16.e.C.officinalis.fasta -------------------------------------------------- d.16.e.R.carriebowensis.fasta -------------------------------------------------- d.16.e.B.hamifera.fasta -------------------------------------------------- d.16.e.G.vagum.fasta -------------------------------------------------- d.16.e.C.crispus.fasta -------------------------------------------------- d.16.e.H.plana.fasta -------------------------------------------------- d.16.e.R.leptophylla.fasta -------------------------------------------------- d.16.e.P.pulvinata.fasta -------------------------------------------------- d.16.e.C.rubrum.fasta -------------------------------------------------- d.16.e.Gracilariopsis.sp.fasta -------------------------------------------------- d.16.e.B.moritziana.fasta -------------------------------------------------- d.16.e.H.rubra.fasta -------------------------------------------------- d.16.e.D.grisea.fasta -------------------------------------------------- d.16.e.N.fowleri.fasta -------------------------------------------------- d.16.e.N.gruberi.fasta -------------------------------------------------- a.16.e.Hexamita.sp.fasta -------------------------------------------------- d.16.e.T.foetus.fasta -------------------------------------------------- d.16.e.A.khaliulini.fasta -------------------------------------------------- d.16.e.E.aedis.fasta -------------------------------------------------- d.16.e.A.connecticus.fasta -------------------------------------------------- d.16.e.I.barri.fasta -------------------------------------------------- d.16.e.A.ferocious.fasta -------------------------------------------------- d.16.e.Amblyospora.sp.fasta -------------------------------------------------- d.16.e.C.lunata.fasta -------------------------------------------------- d.16.e.P.anophelis.fasta -------------------------------------------------- d.16.e.Hazardia.sp.fasta -------------------------------------------------- d.16.e.H.milleri.fasta -------------------------------------------------- d.16.e.P.simulii.fasta -------------------------------------------------- d.16.e.W.palustris.fasta -------------------------------------------------- d.16.e.Nosema.sp.03.fasta -------------------------------------------------- d.16.e.Nosema.sp.05.fasta -------------------------------------------------- d.16.e.Endoreticulatus.sp.fast -------------------------------------------------- d.16.e.Nosema.sp.02.fasta -------------------------------------------------- d.16.e.N.spodopterae.fasta -------------------------------------------------- d.16.e.N.trichoplusiae.fasta -------------------------------------------------- d.16.e.N.bombycis.27.fasta -------------------------------------------------- d.16.e.N.bombycis.02.fasta -------------------------------------------------- d.16.e.V.imperfecta.fasta -------------------------------------------------- d.16.e.N.furnacalis.fasta -------------------------------------------------- d.16.e.Microsporidium57864.fas -------------------------------------------------- d.16.e.Vairimorpha.sp.C21.fast -------------------------------------------------- d.16.e.N.oulemae.fasta -------------------------------------------------- d.16.e.N.necatrix.fasta -------------------------------------------------- d.16.e.V.necatrix.fasta -------------------------------------------------- d.16.e.N.apis.fasta -------------------------------------------------- d.16.e.O.occidentalis.fasta -------------------------------------------------- d.16.e.Microsporidium.sp.DP119 -------------------------------------------------- d.16.e.V.corneae.fasta -------------------------------------------------- d.16.e.A.michaelis.fasta -------------------------------------------------- d.16.e.T.contejeani.fasta -------------------------------------------------- d.16.e.E.hellem.fasta -------------------------------------------------- d.16.e.Encephalitozoon.sp.fast -------------------------------------------------- d.16.e.E.cuniculi.fasta -------------------------------------------------- d.16.e.O.colligata.fasta -------------------------------------------------- d.16.e.E.salmonis.fasta -------------------------------------------------- d.16.e.N.salmonis.fasta -------------------------------------------------- d.16.e.Enterocytozoonidae.sp.f -------------------------------------------------- d.16.e.E.bieneusi.fasta -------------------------------------------------- d.16.e.B.algerae.fasta -------------------------------------------------- d.16.e.T.solenopsae.fasta -------------------------------------------------- d.16.e.V.acridophagus.fasta -------------------------------------------------- d.16.e.Bacillidium.sp.fasta -------------------------------------------------- d.16.e.P.cristatellae.fasta -------------------------------------------------- d.16.e.Pleistophora.sp.fasta -------------------------------------------------- d.16.e.O.operophterae.fasta -------------------------------------------------- d.16.e.F.magnivora.fasta -------------------------------------------------- d.16.e.G.atherinae.fasta -------------------------------------------------- d.16.e.Ichthyosporidium.sp.fas -------------------------------------------------- d.16.e.L.acerinae.fasta -------------------------------------------------- d.16.e.H.anguillarum.fasta -------------------------------------------------- d.16.e.P.mirandellae.fasta -------------------------------------------------- d.16.e.T.hominis.fasta -------------------------------------------------- d.16.e.V.culicis.fasta -------------------------------------------------- d.16.e.P.hippoglossoideos.fast -------------------------------------------------- d.16.e.Microgemma.sp.fasta -------------------------------------------------- d.16.e.S.lophii.fasta -------------------------------------------------- d.16.e.Pleistophora.sp.LS.fast -------------------------------------------------- d.16.e.D.gammarellum.fasta -------------------------------------------------- d.16.e.M.prosopium.fasta -------------------------------------------------- d.16.e.A.scoticae.fasta -------------------------------------------------- d.16.e.P.whitei.fasta -------------------------------------------------- a.16.c.C.coccineum.fasta -------------------------------------------------- a.16.c.C.ruber.fasta -------------------------------------------------- d.16.c.N.tabacum.fasta -------------------------------------------------- d.16.c.S.oleracea.fasta -------------------------------------------------- d.16.c.Z.mays.fasta -------------------------------------------------- d.16.c.M.polymorpha.fasta -------------------------------------------------- d.16.c.R.communis.fasta -------------------------------------------------- d.16.c.C.vulgaris.fasta -------------------------------------------------- d.16.c.P.wickerhamii.fasta -------------------------------------------------- d.16.c.P.minor.fasta -------------------------------------------------- d.16.c.N.olivacea.fasta -------------------------------------------------- d.16.c.P.parkeae.fasta -------------------------------------------------- d.16.c.C.reinhardtii.fasta -------------------------------------------------- b.16.m.A.castellanii.fasta -------------------------------------------------- d.16.c.P.thurberi.fasta -------------------------------------------------- b.16.m.C.crispus.fasta -------------------------------------------------- d.16.c.T.gondii.fasta -------------------------------------------------- b.16.m.N.crassa.fasta -------------------------------------------------- b.16.m.P.anserina.fasta -------------------------------------------------- b.16.m.P.chrysogenum.fasta -------------------------------------------------- b.16.m.E.nidulans.fasta -------------------------------------------------- b.16.m.S.cerevisiae.fasta -------------------------------------------------- b.16.m.W.saturnus.m.fasta -------------------------------------------------- b.16.m.P.minor.fasta -------------------------------------------------- d.16.c.P.falciparum.fasta -------------------------------------------------- d.16.c.B.bovis.fasta -------------------------------------------------- b.16.m.T.pyriformis.fasta -------------------------------------------------- d.16.m.S.sinuspaulianus.fasta -------------------------------------------------- b.16.m.P.tetraurelia.fasta -------------------------------------------------- b.16.m.D.discoideum.fasta -------------------------------------------------- d.16.m.P.polycephalum.fasta -------------------------------------------------- b.16.m.P.littoralis.fasta -------------------------------------------------- b.16.m.P.wickerhamii.fasta -------------------------------------------------- d.16.c.H.africana.fasta -------------------------------------------------- d.16.c.C.fragile.fasta -------------------------------------------------- d.16.c.C.sertularioides.fasta -------------------------------------------------- d.16.c.C.humicola.fasta -------------------------------------------------- d.16.c.P.uvella.fasta -------------------------------------------------- a.16.c.G.nostochinearum.fasta -------------------------------------------------- a.16.c.G.wittrockiana.fasta -------------------------------------------------- d.16.c.C.paradoxa.fasta -------------------------------------------------- d.16.y.C.paradoxa.fasta -------------------------------------------------- d.16.c.Cryptomonas.sp.fasta -------------------------------------------------- d.16.c.P.palmata.fasta -------------------------------------------------- d.16.c.H.akashiwo.fasta -------------------------------------------------- d.16.c.S.pseudocostatum.fasta -------------------------------------------------- d.16.c.P.littoralis.fasta -------------------------------------------------- d.16.c.C.caldarium.fasta -------------------------------------------------- a.16.c.E.huxleyi.fasta -------------------------------------------------- d.16.c.E.gracilis.fasta -------------------------------------------------- d.16.b.Anabaena.sp.fasta -------------------------------------------------- d.16.b.Chlorogloeopsis.PCC7518 -------------------------------------------------- d.16.b.Synechococcus.sp.fasta -------------------------------------------------- d.16.b.Synechocystis.PCC6803.G -------------------------------------------------- d.16.b.O.agardhii.fasta -------------------------------------------------- d.16.b.Pleurocapsa.7516.fasta -------------------------------------------------- d.16.b.M.aeruginosa.fasta -------------------------------------------------- b.16.m.C.reinhardtii.fasta -------------------------------------------------- d.16.m.C.eugametos.fasta -------------------------------------------------- b.16.m.M.senile.fasta -------------------------------------------------- d.16.b.S.pneumoniae.fasta -------------------------------------------------- d.16.b.S.pyogenes.fasta -------------------------------------------------- d.16.b.B.anthracis.fasta -------------------------------------------------- d.16.b.B.cereus.1.fasta -------------------------------------------------- d.16.b.E.faecalis.fasta -------------------------------------------------- d.16.b.E.faecium2.fasta -------------------------------------------------- d.16.b.L.monocytogenes.fasta -------------------------------------------------- d.16.b.B.subtilis.fasta -------------------------------------------------- d.16.b.B.subtilis.GEN.fasta -------------------------------------------------- d.16.b.B.halodurans.fasta -------------------------------------------------- d.16.b.S.aureus.fasta -------------------------------------------------- d.16.b.S.aureus.GEN.fasta -------------------------------------------------- d.16.b.L.lactis.GEN.fasta -------------------------------------------------- d.16.b.S.pyogenes.GEN.fasta -------------------------------------------------- d.16.b.L.acidophilus.fasta -------------------------------------------------- d.16.b.M.capricolum.fasta -------------------------------------------------- d.16.b.M.mycoides.fasta -------------------------------------------------- d.16.b.E.rhusiopathiae.fasta -------------------------------------------------- d.16.b.C.innocuum.fasta -------------------------------------------------- d.16.b.M.genitalium.fasta -------------------------------------------------- d.16.b.M.pneumoniae.GEN.fasta -------------------------------------------------- d.16.b.M.pneumoniae.fasta -------------------------------------------------- d.16.b.M.gallisepticum.fasta -------------------------------------------------- d.16.b.U.urealyticum.fasta -------------------------------------------------- d.16.b.U.urealyticum.GEN.fasta -------------------------------------------------- d.16.b.M.hyopneumoniae.fasta -------------------------------------------------- d.16.b.F.necrophorum.fasta -------------------------------------------------- d.16.b.F.nucleatum.fasta -------------------------------------------------- d.16.b.S.moniliformis.fasta -------------------------------------------------- d.16.b.C.botulinum.F.fasta -------------------------------------------------- d.16.b.C.tetani.fasta -------------------------------------------------- d.16.b.C.perfringens.fasta -------------------------------------------------- d.16.b.C.difficile.fasta -------------------------------------------------- d.16.b.E.brachy.fasta -------------------------------------------------- d.16.b.Epulopiscium.sp.fasta -------------------------------------------------- d.16.b.H.chlorum.fasta -------------------------------------------------- b.16.m.G.max.fasta -------------------------------------------------- b.16.m.O.berteriana.fasta -------------------------------------------------- b.16.m.S.cereale.fasta -------------------------------------------------- b.16.m.T.aestivum.fasta -------------------------------------------------- d.16.m.Z.mays.fasta -------------------------------------------------- b.16.m.M.polymorpha.fasta -------------------------------------------------- b.16.m.N.olivacea.fasta -------------------------------------------------- d.16.b.G.liquefaciens.fasta -------------------------------------------------- d.16.b.B.japonicum.fasta -------------------------------------------------- d.16.b.R.acidophilus.fasta -------------------------------------------------- d.16.b.A.caulinodans.fasta -------------------------------------------------- d.16.b.B.quintana.fasta -------------------------------------------------- d.16.b.M.loti.fasta -------------------------------------------------- d.16.b.A.tumefaciens.fasta -------------------------------------------------- d.16.b.B.bacilliformis.fasta -------------------------------------------------- d.16.b.B.henselae.fasta -------------------------------------------------- d.16.b.B.melitensis.fasta -------------------------------------------------- d.16.b.R.orientis.fasta -------------------------------------------------- d.16.b.Methylobacterium.sp.fas -------------------------------------------------- d.16.b.R.bellii.fasta -------------------------------------------------- d.16.b.R.felis.URRWXCal2.fasta -------------------------------------------------- d.16.b.R.prowazekii.fasta -------------------------------------------------- d.16.b.R.prowazekii.GEN.fasta -------------------------------------------------- d.16.b.R.rickettsii.fasta -------------------------------------------------- d.16.b.A.calcoaceticus.fasta -------------------------------------------------- d.16.b.P.pacificensis.fasta -------------------------------------------------- d.16.b.C.marismortui.fasta -------------------------------------------------- d.16.b.H.halodenitrificans.fas -------------------------------------------------- d.16.b.P.aeruginosa.fasta -------------------------------------------------- d.16.b.P.aeruginosa.GEN.fasta -------------------------------------------------- d.16.b.Pseudomonas.sp.fasta -------------------------------------------------- d.16.b.P.putida.fasta -------------------------------------------------- d.16.b.C.burnetii.fasta -------------------------------------------------- d.16.b.M.capsulatus.fasta -------------------------------------------------- d.16.b.L.pneumophila.1.fasta -------------------------------------------------- d.16.b.L.pneumophila.2.fasta -------------------------------------------------- d.16.b.A.vinosum.fasta -------------------------------------------------- d.16.b.Beggiatoa.sp.fasta -------------------------------------------------- d.16.b.A.hydrophila.fasta -------------------------------------------------- d.16.b.S.putrefaciens.fasta -------------------------------------------------- d.16.b.C.freundii.fasta -------------------------------------------------- d.16.b.S.dysenteriae.1.fasta -------------------------------------------------- d.16.b.K.pneumoniae.fasta -------------------------------------------------- d.16.b.P.shigelloides.fasta -------------------------------------------------- d.16.b.Y.pestis.fasta -------------------------------------------------- d.16.b.Y.pseudotuberculosis.fa -------------------------------------------------- d.16.b.S.dysenteriae.2.fasta -------------------------------------------------- d.16.b.E.coli.0157G.GEN.fasta -------------------------------------------------- d.16.b.E.coli.EDL.GEN.fasta -------------------------------------------------- d.16.b.E.coli.fasta -------------------------------------------------- d.16.b.E.coli.K12.GEN.fasta -------------------------------------------------- h.16.b.E.coli.hlxnum.fasta -------------------------------------------------- m.16.b.E.coli.mhg.fasta -------------------------------------------------- s.16.b.E.coli.schem.fasta -------------------------------------------------- d.16.b.S.typhimurium.fasta -------------------------------------------------- d.16.b.S.marcescens.fasta -------------------------------------------------- d.16.b.E.tarda.fasta -------------------------------------------------- d.16.b.P.vulgaris.fasta -------------------------------------------------- d.16.b.V.cholerae4.fasta -------------------------------------------------- d.16.b.V.cholerae5.fasta -------------------------------------------------- d.16.b.V.cholerae2.fasta -------------------------------------------------- d.16.b.V.cholerae6.fasta -------------------------------------------------- d.16.b.V.cholerae.fasta -------------------------------------------------- d.16.b.V.cholerae.GEN.fasta -------------------------------------------------- d.16.b.V.parahaemolyticus.fast -------------------------------------------------- d.16.b.H.influenzae7.fasta -------------------------------------------------- d.16.b.H.influenzae8.fasta -------------------------------------------------- d.16.b.H.influenzae6.fasta -------------------------------------------------- d.16.b.H.influenz.fasta -------------------------------------------------- d.16.b.H.influenzae.fasta -------------------------------------------------- d.16.b.P.multocida.fasta -------------------------------------------------- d.16.b.P.multocida.GEN.fasta -------------------------------------------------- d.16.b.X.albilineans.fasta -------------------------------------------------- d.16.b.X.campestris.fasta -------------------------------------------------- d.16.b.X.fastidiosa.GEN.fasta -------------------------------------------------- d.16.b.D.nodosus.fasta -------------------------------------------------- d.16.b.F.tularensis.fasta -------------------------------------------------- d.16.b.B.parapertussis.fasta -------------------------------------------------- d.16.b.B.pertussis.fasta -------------------------------------------------- d.16.b.B.bronchiseptica2.fasta -------------------------------------------------- d.16.b.u.proteobacterium.fasta -------------------------------------------------- d.16.b.B.mallei.fasta -------------------------------------------------- d.16.b.Burkholderia.sp.fasta -------------------------------------------------- d.16.b.N.meningitidis.MD58.GEN -------------------------------------------------- d.16.b.N.meningitidis.Z2491.GE -------------------------------------------------- d.16.b.N.gonorrhoeae.fasta -------------------------------------------------- d.16.b.C.testosteroni.fasta -------------------------------------------------- d.16.b.D.desulfuricans.fasta -------------------------------------------------- d.16.b.M.xanthus.fasta -------------------------------------------------- d.16.b.D.thermophilus.fasta -------------------------------------------------- d.16.b.B.burgdorferi.fasta -------------------------------------------------- d.16.b.B.burgdorferi.GEN.fasta -------------------------------------------------- d.16.b.B.hermsii.fasta -------------------------------------------------- d.16.b.S.aurantia.fasta -------------------------------------------------- d.16.b.T.pallidum.A.fasta -------------------------------------------------- d.16.b.L.illini.fasta -------------------------------------------------- d.16.b.L.interrogans.fasta -------------------------------------------------- d.16.b.C.trachomatis.GEN.fasta -------------------------------------------------- d.16.b.C.trachomatis.L2.fasta -------------------------------------------------- d.16.b.C.muridarum.fasta -------------------------------------------------- d.16.b.C.pneumoniae.AR39.fasta -------------------------------------------------- d.16.b.C.pneumoniae.fasta -------------------------------------------------- d.16.b.C.pneumoniae.J138.fasta -------------------------------------------------- d.16.b.C.pneumoniae.CWL029.fas -------------------------------------------------- d.16.b.C.psittaci.fasta -------------------------------------------------- d.16.b.D.radiodurans.1.fasta -------------------------------------------------- d.16.b.D.radiodurans.GEN.fasta -------------------------------------------------- d.16.b.B.fragilis.fasta -------------------------------------------------- d.16.b.P.gingivalis.fasta -------------------------------------------------- d.16.b.C.vibrioforme.fasta -------------------------------------------------- d.16.b.C.jejuni.fasta -------------------------------------------------- d.16.b.C.jejuni.GEN.fasta -------------------------------------------------- d.16.b.C.sputorum.fasta -------------------------------------------------- d.16.b.H.pylori.26695.GEN.fast -------------------------------------------------- d.16.b.H.pylori.J99.GEN.fasta -------------------------------------------------- d.16.b.H.pylori2.fasta -------------------------------------------------- d.16.b.A.capsulatum.fasta -------------------------------------------------- d.16.b.H.foetida.fasta -------------------------------------------------- d.16.b.A.globiformis.fasta -------------------------------------------------- d.16.b.M.luteus.fasta -------------------------------------------------- d.16.b.Frankia.sp.fasta -------------------------------------------------- d.16.b.S.bottropensis.fasta -------------------------------------------------- d.16.b.S.scabiei.fasta -------------------------------------------------- d.16.b.S.neyagawaensis.fasta -------------------------------------------------- d.16.b.S.diastatochromogenes.f -------------------------------------------------- d.16.b.Streptomyces.sp.fasta -------------------------------------------------- d.16.b.S.acidiscabies.fasta -------------------------------------------------- d.16.b.S.griseus.fasta -------------------------------------------------- d.16.b.S.ornatus.fasta -------------------------------------------------- d.16.b.S.subrutilus.fasta -------------------------------------------------- d.16.b.S.bikiniensis.fasta -------------------------------------------------- d.16.b.S.galbus.fasta -------------------------------------------------- d.16.b.S.hygroscopicus.fasta -------------------------------------------------- d.16.b.S.lincolnensis.fasta -------------------------------------------------- d.16.b.S.coelicolor.fasta -------------------------------------------------- d.16.b.S.tendae.fasta -------------------------------------------------- d.16.b.S.ambofaciens.fasta -------------------------------------------------- d.16.b.S.eurythermus.fasta -------------------------------------------------- d.16.b.S.nodosus.fasta -------------------------------------------------- d.16.b.S.sampsonii.fasta -------------------------------------------------- d.16.b.S.glaucescens.fasta -------------------------------------------------- d.16.b.S.pseudogriseolus.fasta -------------------------------------------------- d.16.b.S.caelestis.fasta -------------------------------------------------- d.16.b.S.bluensis.fasta -------------------------------------------------- d.16.b.S.espinosus.fasta -------------------------------------------------- d.16.b.S.mashuensis.fasta -------------------------------------------------- d.16.b.S.rimosus.fasta -------------------------------------------------- d.16.b.S.limosus.fasta -------------------------------------------------- d.16.b.S.odorifer.fasta -------------------------------------------------- d.16.b.S.felleus.fasta -------------------------------------------------- d.16.b.S.albidoflavus.fasta -------------------------------------------------- d.16.b.S.gougerotii.fasta -------------------------------------------------- d.16.b.S.rutgersensis.fasta -------------------------------------------------- d.16.b.S.intermedius.fasta -------------------------------------------------- d.16.b.S.thermodiastaticus.fas -------------------------------------------------- d.16.b.S.thermoviolaceus.fasta -------------------------------------------------- d.16.b.S.thermovulgaris.1.fast -------------------------------------------------- d.16.b.S.thermovulgaris.2.fast -------------------------------------------------- d.16.b.S.macrosporus.fasta -------------------------------------------------- d.16.b.S.megasporus.fasta -------------------------------------------------- d.16.b.S.thermolineatus.fasta -------------------------------------------------- d.16.b.M.tuberculosis.2.fasta -------------------------------------------------- d.16.b.M.tuberculosis.3.fasta -------------------------------------------------- d.16.b.M.avium.fasta -------------------------------------------------- d.16.b.M.leprae.fasta -------------------------------------------------- d.16.b.M.leprae.GEN.fasta -------------------------------------------------- d.16.b.M.tuberculosis.CDC1551. -------------------------------------------------- d.16.b.M.tuberculosis.GEN.fast -------------------------------------------------- d.16.b.N.asteroides.fasta -------------------------------------------------- d.16.b.R.erythropolis.fasta -------------------------------------------------- d.16.b.C.diphtheriae.fasta -------------------------------------------------- d.16.b.A.israelii.fasta -------------------------------------------------- d.16.b.B.hyodysenteriae.fasta -------------------------------------------------- d.16.b.G.subterranea.fasta -------------------------------------------------- d.16.b.P.miotherma.fasta -------------------------------------------------- d.16.b.B.andersonii.fasta -------------------------------------------------- d.16.b.H.aurantiacus.fasta -------------------------------------------------- d.16.b.Leptospirillium.sp.fast -------------------------------------------------- d.16.b.A.aeolicus.fasta -------------------------------------------------- d.16.b.A.pyrophilus.fasta -------------------------------------------------- d.16.b.T.maritima.fasta -------------------------------------------------- d.16.b.T.maritima.GEN.fasta -------------------------------------------------- n.16.b.T.thermophilus.2.num.fa -------------------------------------------------- s.16.b.T.thermophilus.2.schem. -------------------------------------------------- d.16.b.T.thermophilus.2.fasta -------------------------------------------------- s.16.b.T.thermophilus.1.schem. -------------------------------------------------- n.16.b.T.thermophilus.1.num.fa -------------------------------------------------- d.16.b.T.thermophilus.1.fasta -------------------------------------------------- d.16.b.T.aquaticus.fasta -------------------------------------------------- d.16.b.T.roseum.fasta -------------------------------------------------- d.16.b.P.marina.fasta -------------------------------------------------- d.16.b.P.staleyi.fasta -------------------------------------------------- d.16.b.P.Schlesner.fasta -------------------------------------------------- d.16.b.G.obscuriglobus.1.fasta -------------------------------------------------- d.16.b.I.pallida.fasta -------------------------------------------------- d.16.a.P.abyssi.fasta -------------------------------------------------- d.16.a.P.horikoshii.fasta -------------------------------------------------- d.16.a.P.furiosus.fasta -------------------------------------------------- d.16.a.T.celer.fasta -------------------------------------------------- d.16.a.A.fulgidus.fasta -------------------------------------------------- d.16.a.N.equitans.fasta -------------------------------------------------- d.16.a.A.pernix.K1.fasta -------------------------------------------------- d.16.a.P.occultum.fasta -------------------------------------------------- d.16.a.T.tenax.fasta -------------------------------------------------- d.16.a.S.acidocaldarius.fasta -------------------------------------------------- d.16.a.S.solfataricus.fasta -------------------------------------------------- d.16.a.S.solfataricus.2.fasta -------------------------------------------------- d.16.a.M.thermautotrophicus.1. -------------------------------------------------- d.16.a.M.thermautotrophicus.2. -------------------------------------------------- d.16.a.M.formicicum.fasta -------------------------------------------------- d.16.a.M.vannielii.fasta -------------------------------------------------- d.16.a.H.marismortui.rrnA.fast -------------------------------------------------- d.16.a.H.marismortui.rrnB.fast -------------------------------------------------- d.16.a.Halobacterium.sp.fasta -------------------------------------------------- d.16.a.N.bangense.fasta -------------------------------------------------- d.16.a.N.innermongoliae.fasta -------------------------------------------------- d.16.a.H.volcanii.fasta -------------------------------------------------- d.16.a.M.hungatei.fasta -------------------------------------------------- d.16.a.P.torridus.fasta -------------------------------------------------- d.16.a.T.acidophilum.fasta -------------------------------------------------- a.16.e.G.ardeae.fasta -------------------------------------------------- d.16.e.G.intestinalis.fasta -------------------------------------------------- a.16.e.G.muris.fasta -------------------------------------------------- d.16.e.A.bracteata.fasta -------------------------------------------------- d.16.e.Glomus.sp.W3349.fasta -------------------------------------------------- d.16.e.S.cerradensis.fasta -------------------------------------------------- a.16.e.G.intraradices.fasta -------------------------------------------------- d.16.e.S.culisetae.fasta -------------------------------------------------- a.16.e.P.balamuthi.fasta AUGCAUGCCUAAGUACAAACUAUUCUUAUGGUAAAACUGCGGACGGCUCC d.16.e.A.flavus.fasta -------------------------------------------------- d.16.e.T.caries.fasta -------------------------------------------------- d.16.e.M.circinelloides.fasta -------------------------------------------------- d.16.e.M.racemosus.fasta -------------------------------------------------- d.16.e.R.oryzae.fasta -------------------------------------------------- a.16.e.M.edulis.fasta -------------------------------------------------- a.16.e.P.magellanicus.fasta -------------------------------------------------- b.16.e.E.granulosus.fasta -------------------------------------------------- d.16.e.D.melanogaster.fasta -------------------------------------------------- b.16.e.C.koreana.fasta -------------------------------------------------- b.16.e.A.australis.fasta -------------------------------------------------- b.16.e.O.utahensis.fasta -------------------------------------------------- b.16.e.A.salina.fasta -------------------------------------------------- d.16.e.M.musculus.fasta -------------------------------------------------- d.16.e.R.norvegicus.fasta -------------------------------------------------- d.16.e.H.sapiens.fasta -------------------------------------------------- d.16.e.O.cuniculus.fasta -------------------------------------------------- d.16.e.X.borealis.fasta -------------------------------------------------- d.16.e.X.laevis.fasta -------------------------------------------------- d.16.e.A.castellanii.fasta -------------------------------------------------- d.16.e.B.mandrillaris.fasta -------------------------------------------------- d.16.e.P.falciparum.A.fasta -------------------------------------------------- d.16.e.P.falciparum.S.fasta -------------------------------------------------- d.16.e.P.vivax.A.fasta -------------------------------------------------- d.16.e.P.vivax.O.fasta -------------------------------------------------- d.16.e.P.vivax.S.fasta -------------------------------------------------- d.16.e.E.histolytica.fasta -------------------------------------------------- d.16.e.I.hoferi.fasta -------------------------------------------------- d.16.e.Dermocystidium.sp.fasta -------------------------------------------------- d.16.e.S.destruens.fasta -------------------------------------------------- d.16.e.A.unguiculata.fasta -------------------------------------------------- d.16.e.D.grandis.fasta -------------------------------------------------- d.16.e.A.macrogynus.fasta -------------------------------------------------- d.16.e.B.emersonii.fasta -------------------------------------------------- d.16.e.C.albicans.fasta -------------------------------------------------- d.16.e.S.cerevisiae.fasta -------------------------------------------------- d.16.e.N.crassa.fasta -------------------------------------------------- d.16.e.P.anserina.fasta -------------------------------------------------- d.16.e.C.immitis.fasta -------------------------------------------------- d.16.e.L.major.fasta -------------------------------------------------- d.16.e.T.cruzi.fasta -------------------------------------------------- d.16.e.T.brucei.fasta -------------------------------------------------- d.16.e.P.carinii.fasta -------------------------------------------------- d.16.e.C.neoformans.fasta -------------------------------------------------- d.16.e.Fungus.sp.QPX.fasta -------------------------------------------------- d.16.e.U.maydis.fasta -------------------------------------------------- d.16.e.M.leidyi.fasta -------------------------------------------------- d.16.e.T.cystophora.fasta -------------------------------------------------- d.16.e.M.prolifera.fasta -------------------------------------------------- d.16.e.P.haeckeli.fasta -------------------------------------------------- d.16.e.E.rotunda.fasta -------------------------------------------------- d.16.e.P.chromatophora.fasta -------------------------------------------------- d.16.e.A.majus.fasta -------------------------------------------------- d.16.e.S.indicum.fasta -------------------------------------------------- d.16.e.D.grandiflora.fasta -------------------------------------------------- d.16.e.Pla.lanceolata.fasta -------------------------------------------------- d.16.e.N.tabacum.fasta -------------------------------------------------- d.16.e.A.thaliana.fasta -------------------------------------------------- d.16.e.S.alba.fasta -------------------------------------------------- d.16.e.S.tuberosum.fasta -------------------------------------------------- d.16.e.F.x.ananassa.fasta -------------------------------------------------- d.16.e.G.max.fasta -------------------------------------------------- d.16.e.O.sativa.fasta -------------------------------------------------- d.16.e.Z.mays.fasta -------------------------------------------------- d.16.e.A.verticilliflorum.fast -------------------------------------------------- d.16.e.G.spirotaenia.fasta -------------------------------------------------- d.16.e.Staurastrum.sp.M752.fas -------------------------------------------------- d.16.e.C.paradoxa.fasta -------------------------------------------------- d.16.e.G.nostochinearum.fasta -------------------------------------------------- d.16.e.G.wittrockiana.fasta -------------------------------------------------- d.16.e.C.luteoviridis.fasta -------------------------------------------------- d.16.e.O.longa.fasta -------------------------------------------------- d.16.e.P.weissei.fasta -------------------------------------------------- d.16.e.C.citrina.fasta -------------------------------------------------- d.16.e.G.steinii.fasta -------------------------------------------------- d.16.e.Ple.lanceolata.fasta -------------------------------------------------- d.16.e.O.quadricornutus.fasta -------------------------------------------------- d.16.e.S.lemnae.fasta -------------------------------------------------- d.16.e.S.mytilus.fasta -------------------------------------------------- d.16.e.E.mobilis.fasta -------------------------------------------------- d.16.e.O.granulifera.1.fasta -------------------------------------------------- d.16.e.O.granulifera.2.fasta -------------------------------------------------- d.16.e.U.gallina.fasta -------------------------------------------------- d.16.e.U.pisces.fasta -------------------------------------------------- d.16.e.P.lepisma.fasta -------------------------------------------------- d.16.e.U.grandis.fasta -------------------------------------------------- d.16.e.B.coli.fasta -------------------------------------------------- d.16.e.E.aediculatus.fasta -------------------------------------------------- d.16.e.T.thermophila.fasta -------------------------------------------------- d.16.e.Bangia.sp.NWT.fasta -------------------------------------------------- d.16.e.Bangia.sp.VIS7.fasta -------------------------------------------------- d.16.e.E.carnea.fasta -------------------------------------------------- d.16.e.R.parvula.fasta -------------------------------------------------- d.16.e.C.coeruleus.fasta -------------------------------------------------- d.16.e.P.aerugineum.1.fasta -------------------------------------------------- d.16.e.R.maculata.fasta -------------------------------------------------- d.16.e.A.ambigua.fasta -------------------------------------------------- d.16.e.A.baicalensis.fasta -------------------------------------------------- d.16.e.S.nipponica.fasta -------------------------------------------------- d.16.e.C.radiatus.fasta -------------------------------------------------- d.16.e.C.criophilum.fasta -------------------------------------------------- d.16.e.A.capitellata.fasta -------------------------------------------------- d.16.e.S.pupula.fasta -------------------------------------------------- d.16.e.T.antarctica.fasta -------------------------------------------------- d.16.e.E.triangulatum.fasta -------------------------------------------------- d.16.e.A.bongranii.fasta -------------------------------------------------- d.16.e.Pseudogomphonema.sp.fas -------------------------------------------------- d.16.e.D.tenue.fasta -------------------------------------------------- d.16.e.G.marina.fasta -------------------------------------------------- d.16.e.Thalassionema.sp.fasta -------------------------------------------------- d.16.e.R.belgicae.fasta -------------------------------------------------- d.16.e.Undatella.sp.fasta -------------------------------------------------- d.16.e.C.belgica.fasta -------------------------------------------------- d.16.e.O.sinensis.fasta -------------------------------------------------- d.16.e.D.brightwellii.fasta -------------------------------------------------- d.16.e.L.undulatum.fasta -------------------------------------------------- d.16.e.T.eccentrica.fasta -------------------------------------------------- d.16.e.T.pseudonana.fasta -------------------------------------------------- d.16.e.S.costatum.fasta -------------------------------------------------- d.16.e.P.laevis.fasta -------------------------------------------------- d.16.e.L.borealis.fasta -------------------------------------------------- d.16.e.P.pseudodenticulata.fas -------------------------------------------------- d.16.e.B.mediterranea.fasta -------------------------------------------------- d.16.e.B.pacifica.fasta -------------------------------------------------- d.16.e.L.minuta.fasta -------------------------------------------------- d.16.e.L.danicus.fasta -------------------------------------------------- d.16.e.Chaetoceros.sp.fasta -------------------------------------------------- d.16.e.A.invadans.fasta -------------------------------------------------- d.16.e.L.giganteum.fasta -------------------------------------------------- d.16.e.M.varians.fasta -------------------------------------------------- d.16.e.B.hominis.fasta -------------------------------------------------- d.16.e.P.marinus.fasta -------------------------------------------------- d.16.e.T.gondii.fasta -------------------------------------------------- d.16.e.A.fundyense.fasta -------------------------------------------------- d.16.e.B.bigemina.fasta -------------------------------------------------- d.16.e.B.canis.fasta -------------------------------------------------- d.16.e.Babesia.sp.OKD.fasta -------------------------------------------------- d.16.e.B.microti.1.fasta -------------------------------------------------- d.16.e.B.microti.2.fasta -------------------------------------------------- d.16.e.B.microti.3.fasta -------------------------------------------------- d.16.e.B.microti.4.fasta -------------------------------------------------- d.16.e.B.microti.5.fasta -------------------------------------------------- d.16.e.B.rodhaini.fasta -------------------------------------------------- d.16.e.B.gibsoni.fasta -------------------------------------------------- d.16.e.B.bovis.fasta -------------------------------------------------- d.16.e.J.libera.fasta -------------------------------------------------- d.16.e.R.americana.fasta -------------------------------------------------- d.16.e.B.ostreae.fasta -------------------------------------------------- d.16.e.A.dasyae.fasta -------------------------------------------------- d.16.e.A.hermannii.fasta -------------------------------------------------- d.16.e.N.helminthoides.fasta -------------------------------------------------- d.16.e.B.gelatinosum.fasta -------------------------------------------------- d.16.e.N.tortuosa.fasta -------------------------------------------------- d.16.e.T.hispida.fasta -------------------------------------------------- d.16.e.T.violacea.4.fasta -------------------------------------------------- d.16.e.T.violacea.1.fasta -------------------------------------------------- d.16.e.T.violacea.2.fasta -------------------------------------------------- d.16.e.N.shawii.fasta -------------------------------------------------- d.16.e.B.investiens.fasta -------------------------------------------------- d.16.e.B.macrosporum.fasta -------------------------------------------------- d.16.e.A.plicata.fasta -------------------------------------------------- d.16.e.C.officinalis.fasta -------------------------------------------------- d.16.e.R.carriebowensis.fasta -------------------------------------------------- d.16.e.B.hamifera.fasta -------------------------------------------------- d.16.e.G.vagum.fasta -------------------------------------------------- d.16.e.C.crispus.fasta -------------------------------------------------- d.16.e.H.plana.fasta -------------------------------------------------- d.16.e.R.leptophylla.fasta -------------------------------------------------- d.16.e.P.pulvinata.fasta -------------------------------------------------- d.16.e.C.rubrum.fasta -------------------------------------------------- d.16.e.Gracilariopsis.sp.fasta -------------------------------------------------- d.16.e.B.moritziana.fasta -------------------------------------------------- d.16.e.H.rubra.fasta -------------------------------------------------- d.16.e.D.grisea.fasta -------------------------------------------------- d.16.e.N.fowleri.fasta -------------------------------------------------- d.16.e.N.gruberi.fasta -------------------------------------------------- a.16.e.Hexamita.sp.fasta -------------------------------------------------- d.16.e.T.foetus.fasta -------------------------------------------------- d.16.e.A.khaliulini.fasta -------------------------------------------------- d.16.e.E.aedis.fasta -------------------------------------------------- d.16.e.A.connecticus.fasta -------------------------------------------------- d.16.e.I.barri.fasta -------------------------------------------------- d.16.e.A.ferocious.fasta -------------------------------------------------- d.16.e.Amblyospora.sp.fasta -------------------------------------------------- d.16.e.C.lunata.fasta -------------------------------------------------- d.16.e.P.anophelis.fasta -------------------------------------------------- d.16.e.Hazardia.sp.fasta -------------------------------------------------- d.16.e.H.milleri.fasta -------------------------------------------------- d.16.e.P.simulii.fasta -------------------------------------------------- d.16.e.W.palustris.fasta -------------------------------------------------- d.16.e.Nosema.sp.03.fasta -------------------------------------------------- d.16.e.Nosema.sp.05.fasta -------------------------------------------------- d.16.e.Endoreticulatus.sp.fast -------------------------------------------------- d.16.e.Nosema.sp.02.fasta -------------------------------------------------- d.16.e.N.spodopterae.fasta -------------------------------------------------- d.16.e.N.trichoplusiae.fasta -------------------------------------------------- d.16.e.N.bombycis.27.fasta -------------------------------------------------- d.16.e.N.bombycis.02.fasta -------------------------------------------------- d.16.e.V.imperfecta.fasta -------------------------------------------------- d.16.e.N.furnacalis.fasta -------------------------------------------------- d.16.e.Microsporidium57864.fas -------------------------------------------------- d.16.e.Vairimorpha.sp.C21.fast -------------------------------------------------- d.16.e.N.oulemae.fasta -------------------------------------------------- d.16.e.N.necatrix.fasta -------------------------------------------------- d.16.e.V.necatrix.fasta -------------------------------------------------- d.16.e.N.apis.fasta -------------------------------------------------- d.16.e.O.occidentalis.fasta -------------------------------------------------- d.16.e.Microsporidium.sp.DP119 -------------------------------------------------- d.16.e.V.corneae.fasta -------------------------------------------------- d.16.e.A.michaelis.fasta -------------------------------------------------- d.16.e.T.contejeani.fasta -------------------------------------------------- d.16.e.E.hellem.fasta -------------------------------------------------- d.16.e.Encephalitozoon.sp.fast -------------------------------------------------- d.16.e.E.cuniculi.fasta -------------------------------------------------- d.16.e.O.colligata.fasta -------------------------------------------------- d.16.e.E.salmonis.fasta -------------------------------------------------- d.16.e.N.salmonis.fasta -------------------------------------------------- d.16.e.Enterocytozoonidae.sp.f -------------------------------------------------- d.16.e.E.bieneusi.fasta -------------------------------------------------- d.16.e.B.algerae.fasta -------------------------------------------------- d.16.e.T.solenopsae.fasta -------------------------------------------------- d.16.e.V.acridophagus.fasta -------------------------------------------------- d.16.e.Bacillidium.sp.fasta -------------------------------------------------- d.16.e.P.cristatellae.fasta -------------------------------------------------- d.16.e.Pleistophora.sp.fasta -------------------------------------------------- d.16.e.O.operophterae.fasta -------------------------------------------------- d.16.e.F.magnivora.fasta -------------------------------------------------- d.16.e.G.atherinae.fasta -------------------------------------------------- d.16.e.Ichthyosporidium.sp.fas -------------------------------------------------- d.16.e.L.acerinae.fasta -------------------------------------------------- d.16.e.H.anguillarum.fasta -------------------------------------------------- d.16.e.P.mirandellae.fasta -------------------------------------------------- d.16.e.T.hominis.fasta -------------------------------------------------- d.16.e.V.culicis.fasta -------------------------------------------------- d.16.e.P.hippoglossoideos.fast -------------------------------------------------- d.16.e.Microgemma.sp.fasta -------------------------------------------------- d.16.e.S.lophii.fasta -------------------------------------------------- d.16.e.Pleistophora.sp.LS.fast -------------------------------------------------- d.16.e.D.gammarellum.fasta -------------------------------------------------- d.16.e.M.prosopium.fasta -------------------------------------------------- d.16.e.A.scoticae.fasta -------------------------------------------------- d.16.e.P.whitei.fasta -------------------------------------------------- a.16.c.C.coccineum.fasta -------------------------------------------------- a.16.c.C.ruber.fasta -------------------------------------------------- d.16.c.N.tabacum.fasta -------------------------------------------------- d.16.c.S.oleracea.fasta -------------------------------------------------- d.16.c.Z.mays.fasta -------------------------------------------------- d.16.c.M.polymorpha.fasta -------------------------------------------------- d.16.c.R.communis.fasta -------------------------------------------------- d.16.c.C.vulgaris.fasta -------------------------------------------------- d.16.c.P.wickerhamii.fasta -------------------------------------------------- d.16.c.P.minor.fasta -------------------------------------------------- d.16.c.N.olivacea.fasta -------------------------------------------------- d.16.c.P.parkeae.fasta -------------------------------------------------- d.16.c.C.reinhardtii.fasta -------------------------------------------------- b.16.m.A.castellanii.fasta -------------------------------------------------- d.16.c.P.thurberi.fasta -------------------------------------------------- b.16.m.C.crispus.fasta -------------------------------------------------- d.16.c.T.gondii.fasta -------------------------------------------------- b.16.m.N.crassa.fasta -------------------------------------------------- b.16.m.P.anserina.fasta -------------------------------------------------- b.16.m.P.chrysogenum.fasta -------------------------------------------------- b.16.m.E.nidulans.fasta -------------------------------------------------- b.16.m.S.cerevisiae.fasta -------------------------------------------------- b.16.m.W.saturnus.m.fasta -------------------------------------------------- b.16.m.P.minor.fasta -------------------------------------------------- d.16.c.P.falciparum.fasta -------------------------------------------------- d.16.c.B.bovis.fasta -------------------------------------------------- b.16.m.T.pyriformis.fasta -------------------------------------------------- d.16.m.S.sinuspaulianus.fasta -------------------------------------------------- b.16.m.P.tetraurelia.fasta -------------------------------------------------- b.16.m.D.discoideum.fasta -------------------------------------------------- d.16.m.P.polycephalum.fasta -------------------------------------------------- b.16.m.P.littoralis.fasta -------------------------------------------------- b.16.m.P.wickerhamii.fasta -------------------------------------------------- d.16.c.H.africana.fasta -------------------------------------------------- d.16.c.C.fragile.fasta -------------------------------------------------- d.16.c.C.sertularioides.fasta -------------------------------------------------- d.16.c.C.humicola.fasta -------------------------------------------------- d.16.c.P.uvella.fasta -------------------------------------------------- a.16.c.G.nostochinearum.fasta -------------------------------------------------- a.16.c.G.wittrockiana.fasta -------------------------------------------------- d.16.c.C.paradoxa.fasta -------------------------------------------------- d.16.y.C.paradoxa.fasta -------------------------------------------------- d.16.c.Cryptomonas.sp.fasta -------------------------------------------------- d.16.c.P.palmata.fasta -------------------------------------------------- d.16.c.H.akashiwo.fasta -------------------------------------------------- d.16.c.S.pseudocostatum.fasta -------------------------------------------------- d.16.c.P.littoralis.fasta -------------------------------------------------- d.16.c.C.caldarium.fasta -------------------------------------------------- a.16.c.E.huxleyi.fasta -------------------------------------------------- d.16.c.E.gracilis.fasta -------------------------------------------------- d.16.b.Anabaena.sp.fasta -------------------------------------------------- d.16.b.Chlorogloeopsis.PCC7518 -------------------------------------------------- d.16.b.Synechococcus.sp.fasta -------------------------------------------------- d.16.b.Synechocystis.PCC6803.G -------------------------------------------------- d.16.b.O.agardhii.fasta -------------------------------------------------- d.16.b.Pleurocapsa.7516.fasta -------------------------------------------------- d.16.b.M.aeruginosa.fasta -------------------------------------------------- b.16.m.C.reinhardtii.fasta -------------------------------------------------- d.16.m.C.eugametos.fasta -------------------------------------------------- b.16.m.M.senile.fasta -------------------------------------------------- d.16.b.S.pneumoniae.fasta -------------------------------------------------- d.16.b.S.pyogenes.fasta -------------------------------------------------- d.16.b.B.anthracis.fasta -------------------------------------------------- d.16.b.B.cereus.1.fasta -------------------------------------------------- d.16.b.E.faecalis.fasta -------------------------------------------------- d.16.b.E.faecium2.fasta -------------------------------------------------- d.16.b.L.monocytogenes.fasta -------------------------------------------------- d.16.b.B.subtilis.fasta -------------------------------------------------- d.16.b.B.subtilis.GEN.fasta -------------------------------------------------- d.16.b.B.halodurans.fasta -------------------------------------------------- d.16.b.S.aureus.fasta -------------------------------------------------- d.16.b.S.aureus.GEN.fasta -------------------------------------------------- d.16.b.L.lactis.GEN.fasta -------------------------------------------------- d.16.b.S.pyogenes.GEN.fasta -------------------------------------------------- d.16.b.L.acidophilus.fasta -------------------------------------------------- d.16.b.M.capricolum.fasta -------------------------------------------------- d.16.b.M.mycoides.fasta -------------------------------------------------- d.16.b.E.rhusiopathiae.fasta -------------------------------------------------- d.16.b.C.innocuum.fasta -------------------------------------------------- d.16.b.M.genitalium.fasta -------------------------------------------------- d.16.b.M.pneumoniae.GEN.fasta -------------------------------------------------- d.16.b.M.pneumoniae.fasta -------------------------------------------------- d.16.b.M.gallisepticum.fasta -------------------------------------------------- d.16.b.U.urealyticum.fasta -------------------------------------------------- d.16.b.U.urealyticum.GEN.fasta -------------------------------------------------- d.16.b.M.hyopneumoniae.fasta -------------------------------------------------- d.16.b.F.necrophorum.fasta -------------------------------------------------- d.16.b.F.nucleatum.fasta -------------------------------------------------- d.16.b.S.moniliformis.fasta -------------------------------------------------- d.16.b.C.botulinum.F.fasta -------------------------------------------------- d.16.b.C.tetani.fasta -------------------------------------------------- d.16.b.C.perfringens.fasta -------------------------------------------------- d.16.b.C.difficile.fasta -------------------------------------------------- d.16.b.E.brachy.fasta -------------------------------------------------- d.16.b.Epulopiscium.sp.fasta -------------------------------------------------- d.16.b.H.chlorum.fasta -------------------------------------------------- b.16.m.G.max.fasta -------------------------------------------------- b.16.m.O.berteriana.fasta -------------------------------------------------- b.16.m.S.cereale.fasta -------------------------------------------------- b.16.m.T.aestivum.fasta -------------------------------------------------- d.16.m.Z.mays.fasta -------------------------------------------------- b.16.m.M.polymorpha.fasta -------------------------------------------------- b.16.m.N.olivacea.fasta -------------------------------------------------- d.16.b.G.liquefaciens.fasta -------------------------------------------------- d.16.b.B.japonicum.fasta -------------------------------------------------- d.16.b.R.acidophilus.fasta -------------------------------------------------- d.16.b.A.caulinodans.fasta -------------------------------------------------- d.16.b.B.quintana.fasta -------------------------------------------------- d.16.b.M.loti.fasta -------------------------------------------------- d.16.b.A.tumefaciens.fasta -------------------------------------------------- d.16.b.B.bacilliformis.fasta -------------------------------------------------- d.16.b.B.henselae.fasta -------------------------------------------------- d.16.b.B.melitensis.fasta -------------------------------------------------- d.16.b.R.orientis.fasta -------------------------------------------------- d.16.b.Methylobacterium.sp.fas -------------------------------------------------- d.16.b.R.bellii.fasta -------------------------------------------------- d.16.b.R.felis.URRWXCal2.fasta -------------------------------------------------- d.16.b.R.prowazekii.fasta -------------------------------------------------- d.16.b.R.prowazekii.GEN.fasta -------------------------------------------------- d.16.b.R.rickettsii.fasta -------------------------------------------------- d.16.b.A.calcoaceticus.fasta -------------------------------------------------- d.16.b.P.pacificensis.fasta -------------------------------------------------- d.16.b.C.marismortui.fasta -------------------------------------------------- d.16.b.H.halodenitrificans.fas -------------------------------------------------- d.16.b.P.aeruginosa.fasta -------------------------------------------------- d.16.b.P.aeruginosa.GEN.fasta -------------------------------------------------- d.16.b.Pseudomonas.sp.fasta -------------------------------------------------- d.16.b.P.putida.fasta -------------------------------------------------- d.16.b.C.burnetii.fasta -------------------------------------------------- d.16.b.M.capsulatus.fasta -------------------------------------------------- d.16.b.L.pneumophila.1.fasta -------------------------------------------------- d.16.b.L.pneumophila.2.fasta -------------------------------------------------- d.16.b.A.vinosum.fasta -------------------------------------------------- d.16.b.Beggiatoa.sp.fasta -------------------------------------------------- d.16.b.A.hydrophila.fasta -------------------------------------------------- d.16.b.S.putrefaciens.fasta -------------------------------------------------- d.16.b.C.freundii.fasta -------------------------------------------------- d.16.b.S.dysenteriae.1.fasta -------------------------------------------------- d.16.b.K.pneumoniae.fasta -------------------------------------------------- d.16.b.P.shigelloides.fasta -------------------------------------------------- d.16.b.Y.pestis.fasta -------------------------------------------------- d.16.b.Y.pseudotuberculosis.fa -------------------------------------------------- d.16.b.S.dysenteriae.2.fasta -------------------------------------------------- d.16.b.E.coli.0157G.GEN.fasta -------------------------------------------------- d.16.b.E.coli.EDL.GEN.fasta -------------------------------------------------- d.16.b.E.coli.fasta -------------------------------------------------- d.16.b.E.coli.K12.GEN.fasta -------------------------------------------------- h.16.b.E.coli.hlxnum.fasta -------------------------------------------------- m.16.b.E.coli.mhg.fasta -------------------------------------------------- s.16.b.E.coli.schem.fasta -------------------------------------------------- d.16.b.S.typhimurium.fasta -------------------------------------------------- d.16.b.S.marcescens.fasta -------------------------------------------------- d.16.b.E.tarda.fasta -------------------------------------------------- d.16.b.P.vulgaris.fasta -------------------------------------------------- d.16.b.V.cholerae4.fasta -------------------------------------------------- d.16.b.V.cholerae5.fasta -------------------------------------------------- d.16.b.V.cholerae2.fasta -------------------------------------------------- d.16.b.V.cholerae6.fasta -------------------------------------------------- d.16.b.V.cholerae.fasta -------------------------------------------------- d.16.b.V.cholerae.GEN.fasta -------------------------------------------------- d.16.b.V.parahaemolyticus.fast -------------------------------------------------- d.16.b.H.influenzae7.fasta -------------------------------------------------- d.16.b.H.influenzae8.fasta -------------------------------------------------- d.16.b.H.influenzae6.fasta -------------------------------------------------- d.16.b.H.influenz.fasta -------------------------------------------------- d.16.b.H.influenzae.fasta -------------------------------------------------- d.16.b.P.multocida.fasta -------------------------------------------------- d.16.b.P.multocida.GEN.fasta -------------------------------------------------- d.16.b.X.albilineans.fasta -------------------------------------------------- d.16.b.X.campestris.fasta -------------------------------------------------- d.16.b.X.fastidiosa.GEN.fasta -------------------------------------------------- d.16.b.D.nodosus.fasta -------------------------------------------------- d.16.b.F.tularensis.fasta -------------------------------------------------- d.16.b.B.parapertussis.fasta -------------------------------------------------- d.16.b.B.pertussis.fasta -------------------------------------------------- d.16.b.B.bronchiseptica2.fasta -------------------------------------------------- d.16.b.u.proteobacterium.fasta -------------------------------------------------- d.16.b.B.mallei.fasta -------------------------------------------------- d.16.b.Burkholderia.sp.fasta -------------------------------------------------- d.16.b.N.meningitidis.MD58.GEN -------------------------------------------------- d.16.b.N.meningitidis.Z2491.GE -------------------------------------------------- d.16.b.N.gonorrhoeae.fasta -------------------------------------------------- d.16.b.C.testosteroni.fasta -------------------------------------------------- d.16.b.D.desulfuricans.fasta -------------------------------------------------- d.16.b.M.xanthus.fasta -------------------------------------------------- d.16.b.D.thermophilus.fasta -------------------------------------------------- d.16.b.B.burgdorferi.fasta -------------------------------------------------- d.16.b.B.burgdorferi.GEN.fasta -------------------------------------------------- d.16.b.B.hermsii.fasta -------------------------------------------------- d.16.b.S.aurantia.fasta -------------------------------------------------- d.16.b.T.pallidum.A.fasta -------------------------------------------------- d.16.b.L.illini.fasta -------------------------------------------------- d.16.b.L.interrogans.fasta -------------------------------------------------- d.16.b.C.trachomatis.GEN.fasta -------------------------------------------------- d.16.b.C.trachomatis.L2.fasta -------------------------------------------------- d.16.b.C.muridarum.fasta -------------------------------------------------- d.16.b.C.pneumoniae.AR39.fasta -------------------------------------------------- d.16.b.C.pneumoniae.fasta -------------------------------------------------- d.16.b.C.pneumoniae.J138.fasta -------------------------------------------------- d.16.b.C.pneumoniae.CWL029.fas -------------------------------------------------- d.16.b.C.psittaci.fasta -------------------------------------------------- d.16.b.D.radiodurans.1.fasta -------------------------------------------------- d.16.b.D.radiodurans.GEN.fasta -------------------------------------------------- d.16.b.B.fragilis.fasta -------------------------------------------------- d.16.b.P.gingivalis.fasta -------------------------------------------------- d.16.b.C.vibrioforme.fasta -------------------------------------------------- d.16.b.C.jejuni.fasta -------------------------------------------------- d.16.b.C.jejuni.GEN.fasta -------------------------------------------------- d.16.b.C.sputorum.fasta -------------------------------------------------- d.16.b.H.pylori.26695.GEN.fast -------------------------------------------------- d.16.b.H.pylori.J99.GEN.fasta -------------------------------------------------- d.16.b.H.pylori2.fasta -------------------------------------------------- d.16.b.A.capsulatum.fasta -------------------------------------------------- d.16.b.H.foetida.fasta -------------------------------------------------- d.16.b.A.globiformis.fasta -------------------------------------------------- d.16.b.M.luteus.fasta -------------------------------------------------- d.16.b.Frankia.sp.fasta -------------------------------------------------- d.16.b.S.bottropensis.fasta -------------------------------------------------- d.16.b.S.scabiei.fasta -------------------------------------------------- d.16.b.S.neyagawaensis.fasta -------------------------------------------------- d.16.b.S.diastatochromogenes.f -------------------------------------------------- d.16.b.Streptomyces.sp.fasta -------------------------------------------------- d.16.b.S.acidiscabies.fasta -------------------------------------------------- d.16.b.S.griseus.fasta -------------------------------------------------- d.16.b.S.ornatus.fasta -------------------------------------------------- d.16.b.S.subrutilus.fasta -------------------------------------------------- d.16.b.S.bikiniensis.fasta -------------------------------------------------- d.16.b.S.galbus.fasta -------------------------------------------------- d.16.b.S.hygroscopicus.fasta -------------------------------------------------- d.16.b.S.lincolnensis.fasta -------------------------------------------------- d.16.b.S.coelicolor.fasta -------------------------------------------------- d.16.b.S.tendae.fasta -------------------------------------------------- d.16.b.S.ambofaciens.fasta -------------------------------------------------- d.16.b.S.eurythermus.fasta -------------------------------------------------- d.16.b.S.nodosus.fasta -------------------------------------------------- d.16.b.S.sampsonii.fasta -------------------------------------------------- d.16.b.S.glaucescens.fasta -------------------------------------------------- d.16.b.S.pseudogriseolus.fasta -------------------------------------------------- d.16.b.S.caelestis.fasta -------------------------------------------------- d.16.b.S.bluensis.fasta -------------------------------------------------- d.16.b.S.espinosus.fasta -------------------------------------------------- d.16.b.S.mashuensis.fasta -------------------------------------------------- d.16.b.S.rimosus.fasta -------------------------------------------------- d.16.b.S.limosus.fasta -------------------------------------------------- d.16.b.S.odorifer.fasta -------------------------------------------------- d.16.b.S.felleus.fasta -------------------------------------------------- d.16.b.S.albidoflavus.fasta -------------------------------------------------- d.16.b.S.gougerotii.fasta -------------------------------------------------- d.16.b.S.rutgersensis.fasta -------------------------------------------------- d.16.b.S.intermedius.fasta -------------------------------------------------- d.16.b.S.thermodiastaticus.fas -------------------------------------------------- d.16.b.S.thermoviolaceus.fasta -------------------------------------------------- d.16.b.S.thermovulgaris.1.fast -------------------------------------------------- d.16.b.S.thermovulgaris.2.fast -------------------------------------------------- d.16.b.S.macrosporus.fasta -------------------------------------------------- d.16.b.S.megasporus.fasta -------------------------------------------------- d.16.b.S.thermolineatus.fasta -------------------------------------------------- d.16.b.M.tuberculosis.2.fasta -------------------------------------------------- d.16.b.M.tuberculosis.3.fasta -------------------------------------------------- d.16.b.M.avium.fasta -------------------------------------------------- d.16.b.M.leprae.fasta -------------------------------------------------- d.16.b.M.leprae.GEN.fasta -------------------------------------------------- d.16.b.M.tuberculosis.CDC1551. -------------------------------------------------- d.16.b.M.tuberculosis.GEN.fast -------------------------------------------------- d.16.b.N.asteroides.fasta -------------------------------------------------- d.16.b.R.erythropolis.fasta -------------------------------------------------- d.16.b.C.diphtheriae.fasta -------------------------------------------------- d.16.b.A.israelii.fasta -------------------------------------------------- d.16.b.B.hyodysenteriae.fasta -------------------------------------------------- d.16.b.G.subterranea.fasta -------------------------------------------------- d.16.b.P.miotherma.fasta -------------------------------------------------- d.16.b.B.andersonii.fasta -------------------------------------------------- d.16.b.H.aurantiacus.fasta -------------------------------------------------- d.16.b.Leptospirillium.sp.fast -------------------------------------------------- d.16.b.A.aeolicus.fasta -------------------------------------------------- d.16.b.A.pyrophilus.fasta -------------------------------------------------- d.16.b.T.maritima.fasta -------------------------------------------------- d.16.b.T.maritima.GEN.fasta -------------------------------------------------- n.16.b.T.thermophilus.2.num.fa -------------------------------------------------- s.16.b.T.thermophilus.2.schem. -------------------------------------------------- d.16.b.T.thermophilus.2.fasta -------------------------------------------------- s.16.b.T.thermophilus.1.schem. -------------------------------------------------- n.16.b.T.thermophilus.1.num.fa -------------------------------------------------- d.16.b.T.thermophilus.1.fasta -------------------------------------------------- d.16.b.T.aquaticus.fasta -------------------------------------------------- d.16.b.T.roseum.fasta -------------------------------------------------- d.16.b.P.marina.fasta -------------------------------------------------- d.16.b.P.staleyi.fasta -------------------------------------------------- d.16.b.P.Schlesner.fasta -------------------------------------------------- d.16.b.G.obscuriglobus.1.fasta -------------------------------------------------- d.16.b.I.pallida.fasta -------------------------------------------------- d.16.a.P.abyssi.fasta -------------------------------------------------- d.16.a.P.horikoshii.fasta -------------------------------------------------- d.16.a.P.furiosus.fasta -------------------------------------------------- d.16.a.T.celer.fasta -------------------------------------------------- d.16.a.A.fulgidus.fasta -------------------------------------------------- d.16.a.N.equitans.fasta -------------------------------------------------- d.16.a.A.pernix.K1.fasta -------------------------------------------------- d.16.a.P.occultum.fasta -------------------------------------------------- d.16.a.T.tenax.fasta -------------------------------------------------- d.16.a.S.acidocaldarius.fasta -------------------------------------------------- d.16.a.S.solfataricus.fasta -------------------------------------------------- d.16.a.S.solfataricus.2.fasta -------------------------------------------------- d.16.a.M.thermautotrophicus.1. -------------------------------------------------- d.16.a.M.thermautotrophicus.2. -------------------------------------------------- d.16.a.M.formicicum.fasta -------------------------------------------------- d.16.a.M.vannielii.fasta -------------------------------------------------- d.16.a.H.marismortui.rrnA.fast -------------------------------------------------- d.16.a.H.marismortui.rrnB.fast -------------------------------------------------- d.16.a.Halobacterium.sp.fasta -------------------------------------------------- d.16.a.N.bangense.fasta -------------------------------------------------- d.16.a.N.innermongoliae.fasta -------------------------------------------------- d.16.a.H.volcanii.fasta -------------------------------------------------- d.16.a.M.hungatei.fasta -------------------------------------------------- d.16.a.P.torridus.fasta -------------------------------------------------- d.16.a.T.acidophilum.fasta -------------------------------------------------- a.16.e.G.ardeae.fasta -------------------------------------------------- d.16.e.G.intestinalis.fasta -------------------------------------------------- a.16.e.G.muris.fasta -------------------------------------------------- d.16.e.A.bracteata.fasta -------------------------------------------------- d.16.e.Glomus.sp.W3349.fasta -------------------------------------------------- d.16.e.S.cerradensis.fasta -------------------------------------------------- a.16.e.G.intraradices.fasta -------------------------------------------------- d.16.e.S.culisetae.fasta -------------------------------------------------- a.16.e.P.balamuthi.fasta AUAGAUCAGUAAUAGUUCGUUCAGUGAUUUGAAAAAGUACUUGGAUAACC d.16.e.A.flavus.fasta -------------------------------------------------- d.16.e.T.caries.fasta -------------------------------------------------- d.16.e.M.circinelloides.fasta -------------------------------------------------- d.16.e.M.racemosus.fasta -------------------------------------------------- d.16.e.R.oryzae.fasta -------------------------------------------------- a.16.e.M.edulis.fasta -------------------------------------------------- a.16.e.P.magellanicus.fasta -------------------------------------------------- b.16.e.E.granulosus.fasta -------------------------------------------------- d.16.e.D.melanogaster.fasta -------------------------------------------------- b.16.e.C.koreana.fasta -------------------------------------------------- b.16.e.A.australis.fasta -------------------------------------------------- b.16.e.O.utahensis.fasta -------------------------------------------------- b.16.e.A.salina.fasta -------------------------------------------------- d.16.e.M.musculus.fasta -------------------------------------------------- d.16.e.R.norvegicus.fasta -------------------------------------------------- d.16.e.H.sapiens.fasta -------------------------------------------------- d.16.e.O.cuniculus.fasta -------------------------------------------------- d.16.e.X.borealis.fasta -------------------------------------------------- d.16.e.X.laevis.fasta -------------------------------------------------- d.16.e.A.castellanii.fasta -------------------------------------------------- d.16.e.B.mandrillaris.fasta -------------------------------------------------- d.16.e.P.falciparum.A.fasta -------------------------------------------------- d.16.e.P.falciparum.S.fasta -------------------------------------------------- d.16.e.P.vivax.A.fasta -------------------------------------------------- d.16.e.P.vivax.O.fasta -------------------------------------------------- d.16.e.P.vivax.S.fasta -------------------------------------------------- d.16.e.E.histolytica.fasta -------------------------------------------------- d.16.e.I.hoferi.fasta -------------------------------------------------- d.16.e.Dermocystidium.sp.fasta -------------------------------------------------- d.16.e.S.destruens.fasta -------------------------------------------------- d.16.e.A.unguiculata.fasta -------------------------------------------------- d.16.e.D.grandis.fasta -------------------------------------------------- d.16.e.A.macrogynus.fasta -------------------------------------------------- d.16.e.B.emersonii.fasta -------------------------------------------------- d.16.e.C.albicans.fasta -------------------------------------------------- d.16.e.S.cerevisiae.fasta -------------------------------------------------- d.16.e.N.crassa.fasta -------------------------------------------------- d.16.e.P.anserina.fasta -------------------------------------------------- d.16.e.C.immitis.fasta -------------------------------------------------- d.16.e.L.major.fasta -------------------------------------------------- d.16.e.T.cruzi.fasta -------------------------------------------------- d.16.e.T.brucei.fasta -------------------------------------------------- d.16.e.P.carinii.fasta -------------------------------------------------- d.16.e.C.neoformans.fasta -------------------------------------------------- d.16.e.Fungus.sp.QPX.fasta -------------------------------------------------- d.16.e.U.maydis.fasta -------------------------------------------------- d.16.e.M.leidyi.fasta -------------------------------------------------- d.16.e.T.cystophora.fasta -------------------------------------------------- d.16.e.M.prolifera.fasta -------------------------------------------------- d.16.e.P.haeckeli.fasta -------------------------------------------------- d.16.e.E.rotunda.fasta -------------------------------------------------- d.16.e.P.chromatophora.fasta -------------------------------------------------- d.16.e.A.majus.fasta -------------------------------------------------- d.16.e.S.indicum.fasta -------------------------------------------------- d.16.e.D.grandiflora.fasta -------------------------------------------------- d.16.e.Pla.lanceolata.fasta -------------------------------------------------- d.16.e.N.tabacum.fasta -------------------------------------------------- d.16.e.A.thaliana.fasta -------------------------------------------------- d.16.e.S.alba.fasta -------------------------------------------------- d.16.e.S.tuberosum.fasta -------------------------------------------------- d.16.e.F.x.ananassa.fasta -------------------------------------------------- d.16.e.G.max.fasta -------------------------------------------------- d.16.e.O.sativa.fasta -------------------------------------------------- d.16.e.Z.mays.fasta -------------------------------------------------- d.16.e.A.verticilliflorum.fast -------------------------------------------------- d.16.e.G.spirotaenia.fasta -------------------------------------------------- d.16.e.Staurastrum.sp.M752.fas -------------------------------------------------- d.16.e.C.paradoxa.fasta -------------------------------------------------- d.16.e.G.nostochinearum.fasta -------------------------------------------------- d.16.e.G.wittrockiana.fasta -------------------------------------------------- d.16.e.C.luteoviridis.fasta -------------------------------------------------- d.16.e.O.longa.fasta -------------------------------------------------- d.16.e.P.weissei.fasta -------------------------------------------------- d.16.e.C.citrina.fasta -------------------------------------------------- d.16.e.G.steinii.fasta -------------------------------------------------- d.16.e.Ple.lanceolata.fasta -------------------------------------------------- d.16.e.O.quadricornutus.fasta -------------------------------------------------- d.16.e.S.lemnae.fasta -------------------------------------------------- d.16.e.S.mytilus.fasta -------------------------------------------------- d.16.e.E.mobilis.fasta -------------------------------------------------- d.16.e.O.granulifera.1.fasta -------------------------------------------------- d.16.e.O.granulifera.2.fasta -------------------------------------------------- d.16.e.U.gallina.fasta -------------------------------------------------- d.16.e.U.pisces.fasta -------------------------------------------------- d.16.e.P.lepisma.fasta -------------------------------------------------- d.16.e.U.grandis.fasta -------------------------------------------------- d.16.e.B.coli.fasta -------------------------------------------------- d.16.e.E.aediculatus.fasta -------------------------------------------------- d.16.e.T.thermophila.fasta -------------------------------------------------- d.16.e.Bangia.sp.NWT.fasta -------------------------------------------------- d.16.e.Bangia.sp.VIS7.fasta -------------------------------------------------- d.16.e.E.carnea.fasta -------------------------------------------------- d.16.e.R.parvula.fasta -------------------------------------------------- d.16.e.C.coeruleus.fasta -------------------------------------------------- d.16.e.P.aerugineum.1.fasta -------------------------------------------------- d.16.e.R.maculata.fasta -------------------------------------------------- d.16.e.A.ambigua.fasta -------------------------------------------------- d.16.e.A.baicalensis.fasta -------------------------------------------------- d.16.e.S.nipponica.fasta -------------------------------------------------- d.16.e.C.radiatus.fasta -------------------------------------------------- d.16.e.C.criophilum.fasta -------------------------------------------------- d.16.e.A.capitellata.fasta -------------------------------------------------- d.16.e.S.pupula.fasta -------------------------------------------------- d.16.e.T.antarctica.fasta -------------------------------------------------- d.16.e.E.triangulatum.fasta -------------------------------------------------- d.16.e.A.bongranii.fasta -------------------------------------------------- d.16.e.Pseudogomphonema.sp.fas -------------------------------------------------- d.16.e.D.tenue.fasta -------------------------------------------------- d.16.e.G.marina.fasta -------------------------------------------------- d.16.e.Thalassionema.sp.fasta -------------------------------------------------- d.16.e.R.belgicae.fasta -------------------------------------------------- d.16.e.Undatella.sp.fasta -------------------------------------------------- d.16.e.C.belgica.fasta -------------------------------------------------- d.16.e.O.sinensis.fasta -------------------------------------------------- d.16.e.D.brightwellii.fasta -------------------------------------------------- d.16.e.L.undulatum.fasta -------------------------------------------------- d.16.e.T.eccentrica.fasta -------------------------------------------------- d.16.e.T.pseudonana.fasta -------------------------------------------------- d.16.e.S.costatum.fasta -------------------------------------------------- d.16.e.P.laevis.fasta -------------------------------------------------- d.16.e.L.borealis.fasta -------------------------------------------------- d.16.e.P.pseudodenticulata.fas -------------------------------------------------- d.16.e.B.mediterranea.fasta -------------------------------------------------- d.16.e.B.pacifica.fasta -------------------------------------------------- d.16.e.L.minuta.fasta -------------------------------------------------- d.16.e.L.danicus.fasta -------------------------------------------------- d.16.e.Chaetoceros.sp.fasta -------------------------------------------------- d.16.e.A.invadans.fasta -------------------------------------------------- d.16.e.L.giganteum.fasta -------------------------------------------------- d.16.e.M.varians.fasta -------------------------------------------------- d.16.e.B.hominis.fasta -------------------------------------------------- d.16.e.P.marinus.fasta -------------------------------------------------- d.16.e.T.gondii.fasta -------------------------------------------------- d.16.e.A.fundyense.fasta -------------------------------------------------- d.16.e.B.bigemina.fasta -------------------------------------------------- d.16.e.B.canis.fasta -------------------------------------------------- d.16.e.Babesia.sp.OKD.fasta -------------------------------------------------- d.16.e.B.microti.1.fasta -------------------------------------------------- d.16.e.B.microti.2.fasta -------------------------------------------------- d.16.e.B.microti.3.fasta -------------------------------------------------- d.16.e.B.microti.4.fasta -------------------------------------------------- d.16.e.B.microti.5.fasta -------------------------------------------------- d.16.e.B.rodhaini.fasta -------------------------------------------------- d.16.e.B.gibsoni.fasta -------------------------------------------------- d.16.e.B.bovis.fasta -------------------------------------------------- d.16.e.J.libera.fasta -------------------------------------------------- d.16.e.R.americana.fasta -------------------------------------------------- d.16.e.B.ostreae.fasta -------------------------------------------------- d.16.e.A.dasyae.fasta -------------------------------------------------- d.16.e.A.hermannii.fasta -------------------------------------------------- d.16.e.N.helminthoides.fasta -------------------------------------------------- d.16.e.B.gelatinosum.fasta -------------------------------------------------- d.16.e.N.tortuosa.fasta -------------------------------------------------- d.16.e.T.hispida.fasta -------------------------------------------------- d.16.e.T.violacea.4.fasta -------------------------------------------------- d.16.e.T.violacea.1.fasta -------------------------------------------------- d.16.e.T.violacea.2.fasta -------------------------------------------------- d.16.e.N.shawii.fasta -------------------------------------------------- d.16.e.B.investiens.fasta -------------------------------------------------- d.16.e.B.macrosporum.fasta -------------------------------------------------- d.16.e.A.plicata.fasta -------------------------------------------------- d.16.e.C.officinalis.fasta -------------------------------------------------- d.16.e.R.carriebowensis.fasta -------------------------------------------------- d.16.e.B.hamifera.fasta -------------------------------------------------- d.16.e.G.vagum.fasta -------------------------------------------------- d.16.e.C.crispus.fasta -------------------------------------------------- d.16.e.H.plana.fasta -------------------------------------------------- d.16.e.R.leptophylla.fasta -------------------------------------------------- d.16.e.P.pulvinata.fasta -------------------------------------------------- d.16.e.C.rubrum.fasta -------------------------------------------------- d.16.e.Gracilariopsis.sp.fasta -------------------------------------------------- d.16.e.B.moritziana.fasta -------------------------------------------------- d.16.e.H.rubra.fasta -------------------------------------------------- d.16.e.D.grisea.fasta -------------------------------------------------- d.16.e.N.fowleri.fasta -------------------------------------------------- d.16.e.N.gruberi.fasta -------------------------------------------------- a.16.e.Hexamita.sp.fasta -------------------------------------------------- d.16.e.T.foetus.fasta -------------------------------------------------- d.16.e.A.khaliulini.fasta -------------------------------------------------- d.16.e.E.aedis.fasta -------------------------------------------------- d.16.e.A.connecticus.fasta -------------------------------------------------- d.16.e.I.barri.fasta -------------------------------------------------- d.16.e.A.ferocious.fasta -------------------------------------------------- d.16.e.Amblyospora.sp.fasta -------------------------------------------------- d.16.e.C.lunata.fasta -------------------------------------------------- d.16.e.P.anophelis.fasta -------------------------------------------------- d.16.e.Hazardia.sp.fasta -------------------------------------------------- d.16.e.H.milleri.fasta -------------------------------------------------- d.16.e.P.simulii.fasta -------------------------------------------------- d.16.e.W.palustris.fasta -------------------------------------------------- d.16.e.Nosema.sp.03.fasta -------------------------------------------------- d.16.e.Nosema.sp.05.fasta -------------------------------------------------- d.16.e.Endoreticulatus.sp.fast -------------------------------------------------- d.16.e.Nosema.sp.02.fasta -------------------------------------------------- d.16.e.N.spodopterae.fasta -------------------------------------------------- d.16.e.N.trichoplusiae.fasta -------------------------------------------------- d.16.e.N.bombycis.27.fasta -------------------------------------------------- d.16.e.N.bombycis.02.fasta -------------------------------------------------- d.16.e.V.imperfecta.fasta -------------------------------------------------- d.16.e.N.furnacalis.fasta -------------------------------------------------- d.16.e.Microsporidium57864.fas -------------------------------------------------- d.16.e.Vairimorpha.sp.C21.fast -------------------------------------------------- d.16.e.N.oulemae.fasta -------------------------------------------------- d.16.e.N.necatrix.fasta -------------------------------------------------- d.16.e.V.necatrix.fasta -------------------------------------------------- d.16.e.N.apis.fasta -------------------------------------------------- d.16.e.O.occidentalis.fasta -------------------------------------------------- d.16.e.Microsporidium.sp.DP119 -------------------------------------------------- d.16.e.V.corneae.fasta -------------------------------------------------- d.16.e.A.michaelis.fasta -------------------------------------------------- d.16.e.T.contejeani.fasta -------------------------------------------------- d.16.e.E.hellem.fasta -------------------------------------------------- d.16.e.Encephalitozoon.sp.fast -------------------------------------------------- d.16.e.E.cuniculi.fasta -------------------------------------------------- d.16.e.O.colligata.fasta -------------------------------------------------- d.16.e.E.salmonis.fasta -------------------------------------------------- d.16.e.N.salmonis.fasta -------------------------------------------------- d.16.e.Enterocytozoonidae.sp.f -------------------------------------------------- d.16.e.E.bieneusi.fasta -------------------------------------------------- d.16.e.B.algerae.fasta -------------------------------------------------- d.16.e.T.solenopsae.fasta -------------------------------------------------- d.16.e.V.acridophagus.fasta -------------------------------------------------- d.16.e.Bacillidium.sp.fasta -------------------------------------------------- d.16.e.P.cristatellae.fasta -------------------------------------------------- d.16.e.Pleistophora.sp.fasta -------------------------------------------------- d.16.e.O.operophterae.fasta -------------------------------------------------- d.16.e.F.magnivora.fasta -------------------------------------------------- d.16.e.G.atherinae.fasta -------------------------------------------------- d.16.e.Ichthyosporidium.sp.fas -------------------------------------------------- d.16.e.L.acerinae.fasta -------------------------------------------------- d.16.e.H.anguillarum.fasta -------------------------------------------------- d.16.e.P.mirandellae.fasta -------------------------------------------------- d.16.e.T.hominis.fasta -------------------------------------------------- d.16.e.V.culicis.fasta -------------------------------------------------- d.16.e.P.hippoglossoideos.fast -------------------------------------------------- d.16.e.Microgemma.sp.fasta -------------------------------------------------- d.16.e.S.lophii.fasta -------------------------------------------------- d.16.e.Pleistophora.sp.LS.fast -------------------------------------------------- d.16.e.D.gammarellum.fasta -------------------------------------------------- d.16.e.M.prosopium.fasta -------------------------------------------------- d.16.e.A.scoticae.fasta -------------------------------------------------- d.16.e.P.whitei.fasta -------------------------------------------------- a.16.c.C.coccineum.fasta -------------------------------------------------- a.16.c.C.ruber.fasta -------------------------------------------------- d.16.c.N.tabacum.fasta -------------------------------------------------- d.16.c.S.oleracea.fasta -------------------------------------------------- d.16.c.Z.mays.fasta -------------------------------------------------- d.16.c.M.polymorpha.fasta -------------------------------------------------- d.16.c.R.communis.fasta -------------------------------------------------- d.16.c.C.vulgaris.fasta -------------------------------------------------- d.16.c.P.wickerhamii.fasta -------------------------------------------------- d.16.c.P.minor.fasta -------------------------------------------------- d.16.c.N.olivacea.fasta -------------------------------------------------- d.16.c.P.parkeae.fasta -------------------------------------------------- d.16.c.C.reinhardtii.fasta -------------------------------------------------- b.16.m.A.castellanii.fasta -------------------------------------------------- d.16.c.P.thurberi.fasta -------------------------------------------------- b.16.m.C.crispus.fasta -------------------------------------------------- d.16.c.T.gondii.fasta -------------------------------------------------- b.16.m.N.crassa.fasta -------------------------------------------------- b.16.m.P.anserina.fasta -------------------------------------------------- b.16.m.P.chrysogenum.fasta -------------------------------------------------- b.16.m.E.nidulans.fasta -------------------------------------------------- b.16.m.S.cerevisiae.fasta -------------------------------------------------- b.16.m.W.saturnus.m.fasta -------------------------------------------------- b.16.m.P.minor.fasta -------------------------------------------------- d.16.c.P.falciparum.fasta -------------------------------------------------- d.16.c.B.bovis.fasta -------------------------------------------------- b.16.m.T.pyriformis.fasta -------------------------------------------------- d.16.m.S.sinuspaulianus.fasta -------------------------------------------------- b.16.m.P.tetraurelia.fasta -------------------------------------------------- b.16.m.D.discoideum.fasta -------------------------------------------------- d.16.m.P.polycephalum.fasta -------------------------------------------------- b.16.m.P.littoralis.fasta -------------------------------------------------- b.16.m.P.wickerhamii.fasta -------------------------------------------------- d.16.c.H.africana.fasta -------------------------------------------------- d.16.c.C.fragile.fasta -------------------------------------------------- d.16.c.C.sertularioides.fasta -------------------------------------------------- d.16.c.C.humicola.fasta -------------------------------------------------- d.16.c.P.uvella.fasta -------------------------------------------------- a.16.c.G.nostochinearum.fasta -------------------------------------------------- a.16.c.G.wittrockiana.fasta -------------------------------------------------- d.16.c.C.paradoxa.fasta -------------------------------------------------- d.16.y.C.paradoxa.fasta -------------------------------------------------- d.16.c.Cryptomonas.sp.fasta -------------------------------------------------- d.16.c.P.palmata.fasta -------------------------------------------------- d.16.c.H.akashiwo.fasta -------------------------------------------------- d.16.c.S.pseudocostatum.fasta -------------------------------------------------- d.16.c.P.littoralis.fasta -------------------------------------------------- d.16.c.C.caldarium.fasta -------------------------------------------------- a.16.c.E.huxleyi.fasta -------------------------------------------------- d.16.c.E.gracilis.fasta -------------------------------------------------- d.16.b.Anabaena.sp.fasta -------------------------------------------------- d.16.b.Chlorogloeopsis.PCC7518 -------------------------------------------------- d.16.b.Synechococcus.sp.fasta -------------------------------------------------- d.16.b.Synechocystis.PCC6803.G -------------------------------------------------- d.16.b.O.agardhii.fasta -------------------------------------------------- d.16.b.Pleurocapsa.7516.fasta -------------------------------------------------- d.16.b.M.aeruginosa.fasta -------------------------------------------------- b.16.m.C.reinhardtii.fasta -------------------------------------------------- d.16.m.C.eugametos.fasta -------------------------------------------------- b.16.m.M.senile.fasta -------------------------------------------------- d.16.b.S.pneumoniae.fasta -------------------------------------------------- d.16.b.S.pyogenes.fasta -------------------------------------------------- d.16.b.B.anthracis.fasta -------------------------------------------------- d.16.b.B.cereus.1.fasta -------------------------------------------------- d.16.b.E.faecalis.fasta -------------------------------------------------- d.16.b.E.faecium2.fasta -------------------------------------------------- d.16.b.L.monocytogenes.fasta -------------------------------------------------- d.16.b.B.subtilis.fasta -------------------------------------------------- d.16.b.B.subtilis.GEN.fasta -------------------------------------------------- d.16.b.B.halodurans.fasta -------------------------------------------------- d.16.b.S.aureus.fasta -------------------------------------------------- d.16.b.S.aureus.GEN.fasta -------------------------------------------------- d.16.b.L.lactis.GEN.fasta -------------------------------------------------- d.16.b.S.pyogenes.GEN.fasta -------------------------------------------------- d.16.b.L.acidophilus.fasta -------------------------------------------------- d.16.b.M.capricolum.fasta -------------------------------------------------- d.16.b.M.mycoides.fasta -------------------------------------------------- d.16.b.E.rhusiopathiae.fasta -------------------------------------------------- d.16.b.C.innocuum.fasta -------------------------------------------------- d.16.b.M.genitalium.fasta -------------------------------------------------- d.16.b.M.pneumoniae.GEN.fasta -------------------------------------------------- d.16.b.M.pneumoniae.fasta -------------------------------------------------- d.16.b.M.gallisepticum.fasta -------------------------------------------------- d.16.b.U.urealyticum.fasta -------------------------------------------------- d.16.b.U.urealyticum.GEN.fasta -------------------------------------------------- d.16.b.M.hyopneumoniae.fasta -------------------------------------------------- d.16.b.F.necrophorum.fasta -------------------------------------------------- d.16.b.F.nucleatum.fasta -------------------------------------------------- d.16.b.S.moniliformis.fasta -------------------------------------------------- d.16.b.C.botulinum.F.fasta -------------------------------------------------- d.16.b.C.tetani.fasta -------------------------------------------------- d.16.b.C.perfringens.fasta -------------------------------------------------- d.16.b.C.difficile.fasta -------------------------------------------------- d.16.b.E.brachy.fasta -------------------------------------------------- d.16.b.Epulopiscium.sp.fasta -------------------------------------------------- d.16.b.H.chlorum.fasta -------------------------------------------------- b.16.m.G.max.fasta -------------------------------------------------- b.16.m.O.berteriana.fasta -------------------------------------------------- b.16.m.S.cereale.fasta -------------------------------------------------- b.16.m.T.aestivum.fasta -------------------------------------------------- d.16.m.Z.mays.fasta -------------------------------------------------- b.16.m.M.polymorpha.fasta -------------------------------------------------- b.16.m.N.olivacea.fasta -------------------------------------------------- d.16.b.G.liquefaciens.fasta -------------------------------------------------- d.16.b.B.japonicum.fasta -------------------------------------------------- d.16.b.R.acidophilus.fasta -------------------------------------------------- d.16.b.A.caulinodans.fasta -------------------------------------------------- d.16.b.B.quintana.fasta -------------------------------------------------- d.16.b.M.loti.fasta -------------------------------------------------- d.16.b.A.tumefaciens.fasta -------------------------------------------------- d.16.b.B.bacilliformis.fasta -------------------------------------------------- d.16.b.B.henselae.fasta -------------------------------------------------- d.16.b.B.melitensis.fasta -------------------------------------------------- d.16.b.R.orientis.fasta -------------------------------------------------- d.16.b.Methylobacterium.sp.fas -------------------------------------------------- d.16.b.R.bellii.fasta -------------------------------------------------- d.16.b.R.felis.URRWXCal2.fasta -------------------------------------------------- d.16.b.R.prowazekii.fasta -------------------------------------------------- d.16.b.R.prowazekii.GEN.fasta -------------------------------------------------- d.16.b.R.rickettsii.fasta -------------------------------------------------- d.16.b.A.calcoaceticus.fasta -------------------------------------------------- d.16.b.P.pacificensis.fasta -------------------------------------------------- d.16.b.C.marismortui.fasta -------------------------------------------------- d.16.b.H.halodenitrificans.fas -------------------------------------------------- d.16.b.P.aeruginosa.fasta -------------------------------------------------- d.16.b.P.aeruginosa.GEN.fasta -------------------------------------------------- d.16.b.Pseudomonas.sp.fasta -------------------------------------------------- d.16.b.P.putida.fasta -------------------------------------------------- d.16.b.C.burnetii.fasta -------------------------------------------------- d.16.b.M.capsulatus.fasta -------------------------------------------------- d.16.b.L.pneumophila.1.fasta -------------------------------------------------- d.16.b.L.pneumophila.2.fasta -------------------------------------------------- d.16.b.A.vinosum.fasta -------------------------------------------------- d.16.b.Beggiatoa.sp.fasta -------------------------------------------------- d.16.b.A.hydrophila.fasta -------------------------------------------------- d.16.b.S.putrefaciens.fasta -------------------------------------------------- d.16.b.C.freundii.fasta -------------------------------------------------- d.16.b.S.dysenteriae.1.fasta -------------------------------------------------- d.16.b.K.pneumoniae.fasta -------------------------------------------------- d.16.b.P.shigelloides.fasta -------------------------------------------------- d.16.b.Y.pestis.fasta -------------------------------------------------- d.16.b.Y.pseudotuberculosis.fa -------------------------------------------------- d.16.b.S.dysenteriae.2.fasta -------------------------------------------------- d.16.b.E.coli.0157G.GEN.fasta -------------------------------------------------- d.16.b.E.coli.EDL.GEN.fasta -------------------------------------------------- d.16.b.E.coli.fasta -------------------------------------------------- d.16.b.E.coli.K12.GEN.fasta -------------------------------------------------- h.16.b.E.coli.hlxnum.fasta -------------------------------------------------- m.16.b.E.coli.mhg.fasta -------------------------------------------------- s.16.b.E.coli.schem.fasta -------------------------------------------------- d.16.b.S.typhimurium.fasta -------------------------------------------------- d.16.b.S.marcescens.fasta -------------------------------------------------- d.16.b.E.tarda.fasta -------------------------------------------------- d.16.b.P.vulgaris.fasta -------------------------------------------------- d.16.b.V.cholerae4.fasta -------------------------------------------------- d.16.b.V.cholerae5.fasta -------------------------------------------------- d.16.b.V.cholerae2.fasta -------------------------------------------------- d.16.b.V.cholerae6.fasta -------------------------------------------------- d.16.b.V.cholerae.fasta -------------------------------------------------- d.16.b.V.cholerae.GEN.fasta -------------------------------------------------- d.16.b.V.parahaemolyticus.fast -------------------------------------------------- d.16.b.H.influenzae7.fasta -------------------------------------------------- d.16.b.H.influenzae8.fasta -------------------------------------------------- d.16.b.H.influenzae6.fasta -------------------------------------------------- d.16.b.H.influenz.fasta -------------------------------------------------- d.16.b.H.influenzae.fasta -------------------------------------------------- d.16.b.P.multocida.fasta -------------------------------------------------- d.16.b.P.multocida.GEN.fasta -------------------------------------------------- d.16.b.X.albilineans.fasta -------------------------------------------------- d.16.b.X.campestris.fasta -------------------------------------------------- d.16.b.X.fastidiosa.GEN.fasta -------------------------------------------------- d.16.b.D.nodosus.fasta -------------------------------------------------- d.16.b.F.tularensis.fasta -------------------------------------------------- d.16.b.B.parapertussis.fasta -------------------------------------------------- d.16.b.B.pertussis.fasta -------------------------------------------------- d.16.b.B.bronchiseptica2.fasta -------------------------------------------------- d.16.b.u.proteobacterium.fasta -------------------------------------------------- d.16.b.B.mallei.fasta -------------------------------------------------- d.16.b.Burkholderia.sp.fasta -------------------------------------------------- d.16.b.N.meningitidis.MD58.GEN -------------------------------------------------- d.16.b.N.meningitidis.Z2491.GE -------------------------------------------------- d.16.b.N.gonorrhoeae.fasta -------------------------------------------------- d.16.b.C.testosteroni.fasta -------------------------------------------------- d.16.b.D.desulfuricans.fasta -------------------------------------------------- d.16.b.M.xanthus.fasta -------------------------------------------------- d.16.b.D.thermophilus.fasta -------------------------------------------------- d.16.b.B.burgdorferi.fasta -------------------------------------------------- d.16.b.B.burgdorferi.GEN.fasta -------------------------------------------------- d.16.b.B.hermsii.fasta -------------------------------------------------- d.16.b.S.aurantia.fasta -------------------------------------------------- d.16.b.T.pallidum.A.fasta -------------------------------------------------- d.16.b.L.illini.fasta -------------------------------------------------- d.16.b.L.interrogans.fasta -------------------------------------------------- d.16.b.C.trachomatis.GEN.fasta -------------------------------------------------- d.16.b.C.trachomatis.L2.fasta -------------------------------------------------- d.16.b.C.muridarum.fasta -------------------------------------------------- d.16.b.C.pneumoniae.AR39.fasta -------------------------------------------------- d.16.b.C.pneumoniae.fasta -------------------------------------------------- d.16.b.C.pneumoniae.J138.fasta -------------------------------------------------- d.16.b.C.pneumoniae.CWL029.fas -------------------------------------------------- d.16.b.C.psittaci.fasta -------------------------------------------------- d.16.b.D.radiodurans.1.fasta -------------------------------------------------- d.16.b.D.radiodurans.GEN.fasta -------------------------------------------------- d.16.b.B.fragilis.fasta -------------------------------------------------- d.16.b.P.gingivalis.fasta -------------------------------------------------- d.16.b.C.vibrioforme.fasta -------------------------------------------------- d.16.b.C.jejuni.fasta -------------------------------------------------- d.16.b.C.jejuni.GEN.fasta -------------------------------------------------- d.16.b.C.sputorum.fasta -------------------------------------------------- d.16.b.H.pylori.26695.GEN.fast -------------------------------------------------- d.16.b.H.pylori.J99.GEN.fasta -------------------------------------------------- d.16.b.H.pylori2.fasta -------------------------------------------------- d.16.b.A.capsulatum.fasta -------------------------------------------------- d.16.b.H.foetida.fasta -------------------------------------------------- d.16.b.A.globiformis.fasta -------------------------------------------------- d.16.b.M.luteus.fasta -------------------------------------------------- d.16.b.Frankia.sp.fasta -------------------------------------------------- d.16.b.S.bottropensis.fasta -------------------------------------------------- d.16.b.S.scabiei.fasta -------------------------------------------------- d.16.b.S.neyagawaensis.fasta -------------------------------------------------- d.16.b.S.diastatochromogenes.f -------------------------------------------------- d.16.b.Streptomyces.sp.fasta -------------------------------------------------- d.16.b.S.acidiscabies.fasta -------------------------------------------------- d.16.b.S.griseus.fasta -------------------------------------------------- d.16.b.S.ornatus.fasta -------------------------------------------------- d.16.b.S.subrutilus.fasta -------------------------------------------------- d.16.b.S.bikiniensis.fasta -------------------------------------------------- d.16.b.S.galbus.fasta -------------------------------------------------- d.16.b.S.hygroscopicus.fasta -------------------------------------------------- d.16.b.S.lincolnensis.fasta -------------------------------------------------- d.16.b.S.coelicolor.fasta -------------------------------------------------- d.16.b.S.tendae.fasta -------------------------------------------------- d.16.b.S.ambofaciens.fasta -------------------------------------------------- d.16.b.S.eurythermus.fasta -------------------------------------------------- d.16.b.S.nodosus.fasta -------------------------------------------------- d.16.b.S.sampsonii.fasta -------------------------------------------------- d.16.b.S.glaucescens.fasta -------------------------------------------------- d.16.b.S.pseudogriseolus.fasta -------------------------------------------------- d.16.b.S.caelestis.fasta -------------------------------------------------- d.16.b.S.bluensis.fasta -------------------------------------------------- d.16.b.S.espinosus.fasta -------------------------------------------------- d.16.b.S.mashuensis.fasta -------------------------------------------------- d.16.b.S.rimosus.fasta -------------------------------------------------- d.16.b.S.limosus.fasta -------------------------------------------------- d.16.b.S.odorifer.fasta -------------------------------------------------- d.16.b.S.felleus.fasta -------------------------------------------------- d.16.b.S.albidoflavus.fasta -------------------------------------------------- d.16.b.S.gougerotii.fasta -------------------------------------------------- d.16.b.S.rutgersensis.fasta -------------------------------------------------- d.16.b.S.intermedius.fasta -------------------------------------------------- d.16.b.S.thermodiastaticus.fas -------------------------------------------------- d.16.b.S.thermoviolaceus.fasta -------------------------------------------------- d.16.b.S.thermovulgaris.1.fast -------------------------------------------------- d.16.b.S.thermovulgaris.2.fast -------------------------------------------------- d.16.b.S.macrosporus.fasta -------------------------------------------------- d.16.b.S.megasporus.fasta -------------------------------------------------- d.16.b.S.thermolineatus.fasta -------------------------------------------------- d.16.b.M.tuberculosis.2.fasta -------------------------------------------------- d.16.b.M.tuberculosis.3.fasta -------------------------------------------------- d.16.b.M.avium.fasta -------------------------------------------------- d.16.b.M.leprae.fasta -------------------------------------------------- d.16.b.M.leprae.GEN.fasta -------------------------------------------------- d.16.b.M.tuberculosis.CDC1551. -------------------------------------------------- d.16.b.M.tuberculosis.GEN.fast -------------------------------------------------- d.16.b.N.asteroides.fasta -------------------------------------------------- d.16.b.R.erythropolis.fasta -------------------------------------------------- d.16.b.C.diphtheriae.fasta -------------------------------------------------- d.16.b.A.israelii.fasta -------------------------------------------------- d.16.b.B.hyodysenteriae.fasta -------------------------------------------------- d.16.b.G.subterranea.fasta -------------------------------------------------- d.16.b.P.miotherma.fasta -------------------------------------------------- d.16.b.B.andersonii.fasta -------------------------------------------------- d.16.b.H.aurantiacus.fasta -------------------------------------------------- d.16.b.Leptospirillium.sp.fast -------------------------------------------------- d.16.b.A.aeolicus.fasta -------------------------------------------------- d.16.b.A.pyrophilus.fasta -------------------------------------------------- d.16.b.T.maritima.fasta -------------------------------------------------- d.16.b.T.maritima.GEN.fasta -------------------------------------------------- n.16.b.T.thermophilus.2.num.fa -------------------------------------------------- s.16.b.T.thermophilus.2.schem. -------------------------------------------------- d.16.b.T.thermophilus.2.fasta -------------------------------------------------- s.16.b.T.thermophilus.1.schem. -------------------------------------------------- n.16.b.T.thermophilus.1.num.fa -------------------------------------------------- d.16.b.T.thermophilus.1.fasta -------------------------------------------------- d.16.b.T.aquaticus.fasta -------------------------------------------------- d.16.b.T.roseum.fasta -------------------------------------------------- d.16.b.P.marina.fasta -------------------------------------------------- d.16.b.P.staleyi.fasta -------------------------------------------------- d.16.b.P.Schlesner.fasta -------------------------------------------------- d.16.b.G.obscuriglobus.1.fasta -------------------------------------------------- d.16.b.I.pallida.fasta -------------------------------------------------- d.16.a.P.abyssi.fasta -------------------------------------------------- d.16.a.P.horikoshii.fasta -------------------------------------------------- d.16.a.P.furiosus.fasta -------------------------------------------------- d.16.a.T.celer.fasta -------------------------------------------------- d.16.a.A.fulgidus.fasta -------------------------------------------------- d.16.a.N.equitans.fasta -------------------------------------------------- d.16.a.A.pernix.K1.fasta -------------------------------------------------- d.16.a.P.occultum.fasta -------------------------------------------------- d.16.a.T.tenax.fasta -------------------------------------------------- d.16.a.S.acidocaldarius.fasta -------------------------------------------------- d.16.a.S.solfataricus.fasta -------------------------------------------------- d.16.a.S.solfataricus.2.fasta -------------------------------------------------- d.16.a.M.thermautotrophicus.1. -------------------------------------------------- d.16.a.M.thermautotrophicus.2. -------------------------------------------------- d.16.a.M.formicicum.fasta -------------------------------------------------- d.16.a.M.vannielii.fasta -------------------------------------------------- d.16.a.H.marismortui.rrnA.fast -------------------------------------------------- d.16.a.H.marismortui.rrnB.fast -------------------------------------------------- d.16.a.Halobacterium.sp.fasta -------------------------------------------------- d.16.a.N.bangense.fasta -------------------------------------------------- d.16.a.N.innermongoliae.fasta -------------------------------------------------- d.16.a.H.volcanii.fasta -------------------------------------------------- d.16.a.M.hungatei.fasta -------------------------------------------------- d.16.a.P.torridus.fasta -------------------------------------------------- d.16.a.T.acidophilum.fasta -------------------------------------------------- a.16.e.G.ardeae.fasta -------------------------------------------------- d.16.e.G.intestinalis.fasta -------------------------------------------------- a.16.e.G.muris.fasta -------------------------------------------------- d.16.e.A.bracteata.fasta -------------------------------------------------- d.16.e.Glomus.sp.W3349.fasta -------------------------------------------------- d.16.e.S.cerradensis.fasta -------------------------------------------------- a.16.e.G.intraradices.fasta -------------------------------------------------- d.16.e.S.culisetae.fasta -------------------------------------------------- a.16.e.P.balamuthi.fasta CUGUUAAUUGUAGAGCUAAUACAUGCACCGACGGCCUGAUCGGGUGACCG d.16.e.A.flavus.fasta -------------------------------------------------- d.16.e.T.caries.fasta -------------------------------------------------- d.16.e.M.circinelloides.fasta -------------------------------------------------- d.16.e.M.racemosus.fasta -------------------------------------------------- d.16.e.R.oryzae.fasta -------------------------------------------------- a.16.e.M.edulis.fasta -------------------------------------------------- a.16.e.P.magellanicus.fasta -------------------------------------------------- b.16.e.E.granulosus.fasta -------------------------------------------------- d.16.e.D.melanogaster.fasta -------------------------------------------------- b.16.e.C.koreana.fasta -------------------------------------------------- b.16.e.A.australis.fasta -------------------------------------------------- b.16.e.O.utahensis.fasta -------------------------------------------------- b.16.e.A.salina.fasta -------------------------------------------------- d.16.e.M.musculus.fasta -------------------------------------------------- d.16.e.R.norvegicus.fasta -------------------------------------------------- d.16.e.H.sapiens.fasta -------------------------------------------------- d.16.e.O.cuniculus.fasta -------------------------------------------------- d.16.e.X.borealis.fasta -------------------------------------------------- d.16.e.X.laevis.fasta -------------------------------------------------- d.16.e.A.castellanii.fasta -------------------------------------------------- d.16.e.B.mandrillaris.fasta -------------------------------------------------- d.16.e.P.falciparum.A.fasta -------------------------------------------------- d.16.e.P.falciparum.S.fasta -------------------------------------------------- d.16.e.P.vivax.A.fasta -------------------------------------------------- d.16.e.P.vivax.O.fasta -------------------------------------------------- d.16.e.P.vivax.S.fasta -------------------------------------------------- d.16.e.E.histolytica.fasta -------------------------------------------------- d.16.e.I.hoferi.fasta -------------------------------------------------- d.16.e.Dermocystidium.sp.fasta -------------------------------------------------- d.16.e.S.destruens.fasta -------------------------------------------------- d.16.e.A.unguiculata.fasta -------------------------------------------------- d.16.e.D.grandis.fasta -------------------------------------------------- d.16.e.A.macrogynus.fasta -------------------------------------------------- d.16.e.B.emersonii.fasta -------------------------------------------------- d.16.e.C.albicans.fasta -------------------------------------------------- d.16.e.S.cerevisiae.fasta -------------------------------------------------- d.16.e.N.crassa.fasta -------------------------------------------------- d.16.e.P.anserina.fasta -------------------------------------------------- d.16.e.C.immitis.fasta -------------------------------------------------- d.16.e.L.major.fasta -------------------------------------------------- d.16.e.T.cruzi.fasta -------------------------------------------------- d.16.e.T.brucei.fasta -------------------------------------------------- d.16.e.P.carinii.fasta -------------------------------------------------- d.16.e.C.neoformans.fasta -------------------------------------------------- d.16.e.Fungus.sp.QPX.fasta -------------------------------------------------- d.16.e.U.maydis.fasta -------------------------------------------------- d.16.e.M.leidyi.fasta -------------------------------------------------- d.16.e.T.cystophora.fasta -------------------------------------------------- d.16.e.M.prolifera.fasta -------------------------------------------------- d.16.e.P.haeckeli.fasta -------------------------------------------------- d.16.e.E.rotunda.fasta -------------------------------------------------- d.16.e.P.chromatophora.fasta -------------------------------------------------- d.16.e.A.majus.fasta -------------------------------------------------- d.16.e.S.indicum.fasta -------------------------------------------------- d.16.e.D.grandiflora.fasta -------------------------------------------------- d.16.e.Pla.lanceolata.fasta -------------------------------------------------- d.16.e.N.tabacum.fasta -------------------------------------------------- d.16.e.A.thaliana.fasta -------------------------------------------------- d.16.e.S.alba.fasta -------------------------------------------------- d.16.e.S.tuberosum.fasta -------------------------------------------------- d.16.e.F.x.ananassa.fasta -------------------------------------------------- d.16.e.G.max.fasta -------------------------------------------------- d.16.e.O.sativa.fasta -------------------------------------------------- d.16.e.Z.mays.fasta -------------------------------------------------- d.16.e.A.verticilliflorum.fast -------------------------------------------------- d.16.e.G.spirotaenia.fasta -------------------------------------------------- d.16.e.Staurastrum.sp.M752.fas -------------------------------------------------- d.16.e.C.paradoxa.fasta -------------------------------------------------- d.16.e.G.nostochinearum.fasta -------------------------------------------------- d.16.e.G.wittrockiana.fasta -------------------------------------------------- d.16.e.C.luteoviridis.fasta -------------------------------------------------- d.16.e.O.longa.fasta -------------------------------------------------- d.16.e.P.weissei.fasta -------------------------------------------------- d.16.e.C.citrina.fasta -------------------------------------------------- d.16.e.G.steinii.fasta -------------------------------------------------- d.16.e.Ple.lanceolata.fasta -------------------------------------------------- d.16.e.O.quadricornutus.fasta -------------------------------------------------- d.16.e.S.lemnae.fasta -------------------------------------------------- d.16.e.S.mytilus.fasta -------------------------------------------------- d.16.e.E.mobilis.fasta -------------------------------------------------- d.16.e.O.granulifera.1.fasta -------------------------------------------------- d.16.e.O.granulifera.2.fasta -------------------------------------------------- d.16.e.U.gallina.fasta -------------------------------------------------- d.16.e.U.pisces.fasta -------------------------------------------------- d.16.e.P.lepisma.fasta -------------------------------------------------- d.16.e.U.grandis.fasta -------------------------------------------------- d.16.e.B.coli.fasta -------------------------------------------------- d.16.e.E.aediculatus.fasta -------------------------------------------------- d.16.e.T.thermophila.fasta -------------------------------------------------- d.16.e.Bangia.sp.NWT.fasta -------------------------------------------------- d.16.e.Bangia.sp.VIS7.fasta -------------------------------------------------- d.16.e.E.carnea.fasta -------------------------------------------------- d.16.e.R.parvula.fasta -------------------------------------------------- d.16.e.C.coeruleus.fasta -------------------------------------------------- d.16.e.P.aerugineum.1.fasta -------------------------------------------------- d.16.e.R.maculata.fasta -------------------------------------------------- d.16.e.A.ambigua.fasta -------------------------------------------------- d.16.e.A.baicalensis.fasta -------------------------------------------------- d.16.e.S.nipponica.fasta -------------------------------------------------- d.16.e.C.radiatus.fasta -------------------------------------------------- d.16.e.C.criophilum.fasta -------------------------------------------------- d.16.e.A.capitellata.fasta -------------------------------------------------- d.16.e.S.pupula.fasta -------------------------------------------------- d.16.e.T.antarctica.fasta -------------------------------------------------- d.16.e.E.triangulatum.fasta -------------------------------------------------- d.16.e.A.bongranii.fasta -------------------------------------------------- d.16.e.Pseudogomphonema.sp.fas -------------------------------------------------- d.16.e.D.tenue.fasta -------------------------------------------------- d.16.e.G.marina.fasta -------------------------------------------------- d.16.e.Thalassionema.sp.fasta -------------------------------------------------- d.16.e.R.belgicae.fasta -------------------------------------------------- d.16.e.Undatella.sp.fasta -------------------------------------------------- d.16.e.C.belgica.fasta -------------------------------------------------- d.16.e.O.sinensis.fasta -------------------------------------------------- d.16.e.D.brightwellii.fasta -------------------------------------------------- d.16.e.L.undulatum.fasta -------------------------------------------------- d.16.e.T.eccentrica.fasta -------------------------------------------------- d.16.e.T.pseudonana.fasta -------------------------------------------------- d.16.e.S.costatum.fasta -------------------------------------------------- d.16.e.P.laevis.fasta -------------------------------------------------- d.16.e.L.borealis.fasta -------------------------------------------------- d.16.e.P.pseudodenticulata.fas -------------------------------------------------- d.16.e.B.mediterranea.fasta -------------------------------------------------- d.16.e.B.pacifica.fasta -------------------------------------------------- d.16.e.L.minuta.fasta -------------------------------------------------- d.16.e.L.danicus.fasta -------------------------------------------------- d.16.e.Chaetoceros.sp.fasta -------------------------------------------------- d.16.e.A.invadans.fasta -------------------------------------------------- d.16.e.L.giganteum.fasta -------------------------------------------------- d.16.e.M.varians.fasta -------------------------------------------------- d.16.e.B.hominis.fasta -------------------------------------------------- d.16.e.P.marinus.fasta -------------------------------------------------- d.16.e.T.gondii.fasta -------------------------------------------------- d.16.e.A.fundyense.fasta -------------------------------------------------- d.16.e.B.bigemina.fasta -------------------------------------------------- d.16.e.B.canis.fasta -------------------------------------------------- d.16.e.Babesia.sp.OKD.fasta -------------------------------------------------- d.16.e.B.microti.1.fasta -------------------------------------------------- d.16.e.B.microti.2.fasta -------------------------------------------------- d.16.e.B.microti.3.fasta -------------------------------------------------- d.16.e.B.microti.4.fasta -------------------------------------------------- d.16.e.B.microti.5.fasta -------------------------------------------------- d.16.e.B.rodhaini.fasta -------------------------------------------------- d.16.e.B.gibsoni.fasta -------------------------------------------------- d.16.e.B.bovis.fasta -------------------------------------------------- d.16.e.J.libera.fasta -------------------------------------------------- d.16.e.R.americana.fasta -------------------------------------------------- d.16.e.B.ostreae.fasta -------------------------------------------------- d.16.e.A.dasyae.fasta -------------------------------------------------- d.16.e.A.hermannii.fasta -------------------------------------------------- d.16.e.N.helminthoides.fasta -------------------------------------------------- d.16.e.B.gelatinosum.fasta -------------------------------------------------- d.16.e.N.tortuosa.fasta -------------------------------------------------- d.16.e.T.hispida.fasta -------------------------------------------------- d.16.e.T.violacea.4.fasta -------------------------------------------------- d.16.e.T.violacea.1.fasta -------------------------------------------------- d.16.e.T.violacea.2.fasta -------------------------------------------------- d.16.e.N.shawii.fasta -------------------------------------------------- d.16.e.B.investiens.fasta -------------------------------------------------- d.16.e.B.macrosporum.fasta -------------------------------------------------- d.16.e.A.plicata.fasta -------------------------------------------------- d.16.e.C.officinalis.fasta -------------------------------------------------- d.16.e.R.carriebowensis.fasta -------------------------------------------------- d.16.e.B.hamifera.fasta -------------------------------------------------- d.16.e.G.vagum.fasta -------------------------------------------------- d.16.e.C.crispus.fasta -------------------------------------------------- d.16.e.H.plana.fasta -------------------------------------------------- d.16.e.R.leptophylla.fasta -------------------------------------------------- d.16.e.P.pulvinata.fasta -------------------------------------------------- d.16.e.C.rubrum.fasta -------------------------------------------------- d.16.e.Gracilariopsis.sp.fasta -------------------------------------------------- d.16.e.B.moritziana.fasta -------------------------------------------------- d.16.e.H.rubra.fasta -------------------------------------------------- d.16.e.D.grisea.fasta -------------------------------------------------- d.16.e.N.fowleri.fasta -------------------------------------------------- d.16.e.N.gruberi.fasta -------------------------------------------------- a.16.e.Hexamita.sp.fasta -------------------------------------------------- d.16.e.T.foetus.fasta -------------------------------------------------- d.16.e.A.khaliulini.fasta -------------------------------------------------- d.16.e.E.aedis.fasta -------------------------------------------------- d.16.e.A.connecticus.fasta -------------------------------------------------- d.16.e.I.barri.fasta -------------------------------------------------- d.16.e.A.ferocious.fasta -------------------------------------------------- d.16.e.Amblyospora.sp.fasta -------------------------------------------------- d.16.e.C.lunata.fasta -------------------------------------------------- d.16.e.P.anophelis.fasta -------------------------------------------------- d.16.e.Hazardia.sp.fasta -------------------------------------------------- d.16.e.H.milleri.fasta -------------------------------------------------- d.16.e.P.simulii.fasta -------------------------------------------------- d.16.e.W.palustris.fasta -------------------------------------------------- d.16.e.Nosema.sp.03.fasta -------------------------------------------------- d.16.e.Nosema.sp.05.fasta -------------------------------------------------- d.16.e.Endoreticulatus.sp.fast -------------------------------------------------- d.16.e.Nosema.sp.02.fasta -------------------------------------------------- d.16.e.N.spodopterae.fasta -------------------------------------------------- d.16.e.N.trichoplusiae.fasta -------------------------------------------------- d.16.e.N.bombycis.27.fasta -------------------------------------------------- d.16.e.N.bombycis.02.fasta -------------------------------------------------- d.16.e.V.imperfecta.fasta -------------------------------------------------- d.16.e.N.furnacalis.fasta -------------------------------------------------- d.16.e.Microsporidium57864.fas -------------------------------------------------- d.16.e.Vairimorpha.sp.C21.fast -------------------------------------------------- d.16.e.N.oulemae.fasta -------------------------------------------------- d.16.e.N.necatrix.fasta -------------------------------------------------- d.16.e.V.necatrix.fasta -------------------------------------------------- d.16.e.N.apis.fasta -------------------------------------------------- d.16.e.O.occidentalis.fasta -------------------------------------------------- d.16.e.Microsporidium.sp.DP119 -------------------------------------------------- d.16.e.V.corneae.fasta -------------------------------------------------- d.16.e.A.michaelis.fasta -------------------------------------------------- d.16.e.T.contejeani.fasta -------------------------------------------------- d.16.e.E.hellem.fasta -------------------------------------------------- d.16.e.Encephalitozoon.sp.fast -------------------------------------------------- d.16.e.E.cuniculi.fasta -------------------------------------------------- d.16.e.O.colligata.fasta -------------------------------------------------- d.16.e.E.salmonis.fasta -------------------------------------------------- d.16.e.N.salmonis.fasta -------------------------------------------------- d.16.e.Enterocytozoonidae.sp.f -------------------------------------------------- d.16.e.E.bieneusi.fasta -------------------------------------------------- d.16.e.B.algerae.fasta -------------------------------------------------- d.16.e.T.solenopsae.fasta -------------------------------------------------- d.16.e.V.acridophagus.fasta -------------------------------------------------- d.16.e.Bacillidium.sp.fasta -------------------------------------------------- d.16.e.P.cristatellae.fasta -------------------------------------------------- d.16.e.Pleistophora.sp.fasta -------------------------------------------------- d.16.e.O.operophterae.fasta -------------------------------------------------- d.16.e.F.magnivora.fasta -------------------------------------------------- d.16.e.G.atherinae.fasta -------------------------------------------------- d.16.e.Ichthyosporidium.sp.fas -------------------------------------------------- d.16.e.L.acerinae.fasta -------------------------------------------------- d.16.e.H.anguillarum.fasta -------------------------------------------------- d.16.e.P.mirandellae.fasta -------------------------------------------------- d.16.e.T.hominis.fasta -------------------------------------------------- d.16.e.V.culicis.fasta -------------------------------------------------- d.16.e.P.hippoglossoideos.fast -------------------------------------------------- d.16.e.Microgemma.sp.fasta -------------------------------------------------- d.16.e.S.lophii.fasta -------------------------------------------------- d.16.e.Pleistophora.sp.LS.fast -------------------------------------------------- d.16.e.D.gammarellum.fasta -------------------------------------------------- d.16.e.M.prosopium.fasta -------------------------------------------------- d.16.e.A.scoticae.fasta -------------------------------------------------- d.16.e.P.whitei.fasta -------------------------------------------------- a.16.c.C.coccineum.fasta -------------------------------------------------- a.16.c.C.ruber.fasta -------------------------------------------------- d.16.c.N.tabacum.fasta -------------------------------------------------- d.16.c.S.oleracea.fasta -------------------------------------------------- d.16.c.Z.mays.fasta -------------------------------------------------- d.16.c.M.polymorpha.fasta -------------------------------------------------- d.16.c.R.communis.fasta -------------------------------------------------- d.16.c.C.vulgaris.fasta -------------------------------------------------- d.16.c.P.wickerhamii.fasta -------------------------------------------------- d.16.c.P.minor.fasta -------------------------------------------------- d.16.c.N.olivacea.fasta -------------------------------------------------- d.16.c.P.parkeae.fasta -------------------------------------------------- d.16.c.C.reinhardtii.fasta -------------------------------------------------- b.16.m.A.castellanii.fasta -------------------------------------------------- d.16.c.P.thurberi.fasta -------------------------------------------------- b.16.m.C.crispus.fasta -------------------------------------------------- d.16.c.T.gondii.fasta -------------------------------------------------- b.16.m.N.crassa.fasta -------------------------------------------------- b.16.m.P.anserina.fasta -------------------------------------------------- b.16.m.P.chrysogenum.fasta -------------------------------------------------- b.16.m.E.nidulans.fasta -------------------------------------------------- b.16.m.S.cerevisiae.fasta -------------------------------------------------- b.16.m.W.saturnus.m.fasta -------------------------------------------------- b.16.m.P.minor.fasta -------------------------------------------------- d.16.c.P.falciparum.fasta -------------------------------------------------- d.16.c.B.bovis.fasta -------------------------------------------------- b.16.m.T.pyriformis.fasta -------------------------------------------------- d.16.m.S.sinuspaulianus.fasta -------------------------------------------------- b.16.m.P.tetraurelia.fasta -------------------------------------------------- b.16.m.D.discoideum.fasta -------------------------------------------------- d.16.m.P.polycephalum.fasta -------------------------------------------------- b.16.m.P.littoralis.fasta -------------------------------------------------- b.16.m.P.wickerhamii.fasta -------------------------------------------------- d.16.c.H.africana.fasta -------------------------------------------------- d.16.c.C.fragile.fasta -------------------------------------------------- d.16.c.C.sertularioides.fasta -------------------------------------------------- d.16.c.C.humicola.fasta -------------------------------------------------- d.16.c.P.uvella.fasta -------------------------------------------------- a.16.c.G.nostochinearum.fasta -------------------------------------------------- a.16.c.G.wittrockiana.fasta -------------------------------------------------- d.16.c.C.paradoxa.fasta -------------------------------------------------- d.16.y.C.paradoxa.fasta -------------------------------------------------- d.16.c.Cryptomonas.sp.fasta -------------------------------------------------- d.16.c.P.palmata.fasta -------------------------------------------------- d.16.c.H.akashiwo.fasta -------------------------------------------------- d.16.c.S.pseudocostatum.fasta -------------------------------------------------- d.16.c.P.littoralis.fasta -------------------------------------------------- d.16.c.C.caldarium.fasta -------------------------------------------------- a.16.c.E.huxleyi.fasta -------------------------------------------------- d.16.c.E.gracilis.fasta -------------------------------------------------- d.16.b.Anabaena.sp.fasta -------------------------------------------------- d.16.b.Chlorogloeopsis.PCC7518 -------------------------------------------------- d.16.b.Synechococcus.sp.fasta -------------------------------------------------- d.16.b.Synechocystis.PCC6803.G -------------------------------------------------- d.16.b.O.agardhii.fasta -------------------------------------------------- d.16.b.Pleurocapsa.7516.fasta -------------------------------------------------- d.16.b.M.aeruginosa.fasta -------------------------------------------------- b.16.m.C.reinhardtii.fasta -------------------------------------------------- d.16.m.C.eugametos.fasta -------------------------------------------------- b.16.m.M.senile.fasta -------------------------------------------------- d.16.b.S.pneumoniae.fasta -------------------------------------------------- d.16.b.S.pyogenes.fasta -------------------------------------------------- d.16.b.B.anthracis.fasta -------------------------------------------------- d.16.b.B.cereus.1.fasta -------------------------------------------------- d.16.b.E.faecalis.fasta -------------------------------------------------- d.16.b.E.faecium2.fasta -------------------------------------------------- d.16.b.L.monocytogenes.fasta -------------------------------------------------- d.16.b.B.subtilis.fasta -------------------------------------------------- d.16.b.B.subtilis.GEN.fasta -------------------------------------------------- d.16.b.B.halodurans.fasta -------------------------------------------------- d.16.b.S.aureus.fasta -------------------------------------------------- d.16.b.S.aureus.GEN.fasta -------------------------------------------------- d.16.b.L.lactis.GEN.fasta -------------------------------------------------- d.16.b.S.pyogenes.GEN.fasta -------------------------------------------------- d.16.b.L.acidophilus.fasta -------------------------------------------------- d.16.b.M.capricolum.fasta -------------------------------------------------- d.16.b.M.mycoides.fasta -------------------------------------------------- d.16.b.E.rhusiopathiae.fasta -------------------------------------------------- d.16.b.C.innocuum.fasta -------------------------------------------------- d.16.b.M.genitalium.fasta -------------------------------------------------- d.16.b.M.pneumoniae.GEN.fasta -------------------------------------------------- d.16.b.M.pneumoniae.fasta -------------------------------------------------- d.16.b.M.gallisepticum.fasta -------------------------------------------------- d.16.b.U.urealyticum.fasta -------------------------------------------------- d.16.b.U.urealyticum.GEN.fasta -------------------------------------------------- d.16.b.M.hyopneumoniae.fasta -------------------------------------------------- d.16.b.F.necrophorum.fasta -------------------------------------------------- d.16.b.F.nucleatum.fasta -------------------------------------------------- d.16.b.S.moniliformis.fasta -------------------------------------------------- d.16.b.C.botulinum.F.fasta -------------------------------------------------- d.16.b.C.tetani.fasta -------------------------------------------------- d.16.b.C.perfringens.fasta -------------------------------------------------- d.16.b.C.difficile.fasta -------------------------------------------------- d.16.b.E.brachy.fasta -------------------------------------------------- d.16.b.Epulopiscium.sp.fasta -------------------------------------------------- d.16.b.H.chlorum.fasta -------------------------------------------------- b.16.m.G.max.fasta -------------------------------------------------- b.16.m.O.berteriana.fasta -------------------------------------------------- b.16.m.S.cereale.fasta -------------------------------------------------- b.16.m.T.aestivum.fasta -------------------------------------------------- d.16.m.Z.mays.fasta -------------------------------------------------- b.16.m.M.polymorpha.fasta -------------------------------------------------- b.16.m.N.olivacea.fasta -------------------------------------------------- d.16.b.G.liquefaciens.fasta -------------------------------------------------- d.16.b.B.japonicum.fasta -------------------------------------------------- d.16.b.R.acidophilus.fasta -------------------------------------------------- d.16.b.A.caulinodans.fasta -------------------------------------------------- d.16.b.B.quintana.fasta -------------------------------------------------- d.16.b.M.loti.fasta -------------------------------------------------- d.16.b.A.tumefaciens.fasta -------------------------------------------------- d.16.b.B.bacilliformis.fasta -------------------------------------------------- d.16.b.B.henselae.fasta -------------------------------------------------- d.16.b.B.melitensis.fasta -------------------------------------------------- d.16.b.R.orientis.fasta -------------------------------------------------- d.16.b.Methylobacterium.sp.fas -------------------------------------------------- d.16.b.R.bellii.fasta -------------------------------------------------- d.16.b.R.felis.URRWXCal2.fasta -------------------------------------------------- d.16.b.R.prowazekii.fasta -------------------------------------------------- d.16.b.R.prowazekii.GEN.fasta -------------------------------------------------- d.16.b.R.rickettsii.fasta -------------------------------------------------- d.16.b.A.calcoaceticus.fasta -------------------------------------------------- d.16.b.P.pacificensis.fasta -------------------------------------------------- d.16.b.C.marismortui.fasta -------------------------------------------------- d.16.b.H.halodenitrificans.fas -------------------------------------------------- d.16.b.P.aeruginosa.fasta -------------------------------------------------- d.16.b.P.aeruginosa.GEN.fasta -------------------------------------------------- d.16.b.Pseudomonas.sp.fasta -------------------------------------------------- d.16.b.P.putida.fasta -------------------------------------------------- d.16.b.C.burnetii.fasta -------------------------------------------------- d.16.b.M.capsulatus.fasta -------------------------------------------------- d.16.b.L.pneumophila.1.fasta -------------------------------------------------- d.16.b.L.pneumophila.2.fasta -------------------------------------------------- d.16.b.A.vinosum.fasta -------------------------------------------------- d.16.b.Beggiatoa.sp.fasta -------------------------------------------------- d.16.b.A.hydrophila.fasta -------------------------------------------------- d.16.b.S.putrefaciens.fasta -------------------------------------------------- d.16.b.C.freundii.fasta -------------------------------------------------- d.16.b.S.dysenteriae.1.fasta -------------------------------------------------- d.16.b.K.pneumoniae.fasta -------------------------------------------------- d.16.b.P.shigelloides.fasta -------------------------------------------------- d.16.b.Y.pestis.fasta -------------------------------------------------- d.16.b.Y.pseudotuberculosis.fa -------------------------------------------------- d.16.b.S.dysenteriae.2.fasta -------------------------------------------------- d.16.b.E.coli.0157G.GEN.fasta -------------------------------------------------- d.16.b.E.coli.EDL.GEN.fasta -------------------------------------------------- d.16.b.E.coli.fasta -------------------------------------------------- d.16.b.E.coli.K12.GEN.fasta -------------------------------------------------- h.16.b.E.coli.hlxnum.fasta -------------------------------------------------- m.16.b.E.coli.mhg.fasta -------------------------------------------------- s.16.b.E.coli.schem.fasta -------------------------------------------------- d.16.b.S.typhimurium.fasta -------------------------------------------------- d.16.b.S.marcescens.fasta -------------------------------------------------- d.16.b.E.tarda.fasta -------------------------------------------------- d.16.b.P.vulgaris.fasta -------------------------------------------------- d.16.b.V.cholerae4.fasta -------------------------------------------------- d.16.b.V.cholerae5.fasta -------------------------------------------------- d.16.b.V.cholerae2.fasta -------------------------------------------------- d.16.b.V.cholerae6.fasta -------------------------------------------------- d.16.b.V.cholerae.fasta -------------------------------------------------- d.16.b.V.cholerae.GEN.fasta -------------------------------------------------- d.16.b.V.parahaemolyticus.fast -------------------------------------------------- d.16.b.H.influenzae7.fasta -------------------------------------------------- d.16.b.H.influenzae8.fasta -------------------------------------------------- d.16.b.H.influenzae6.fasta -------------------------------------------------- d.16.b.H.influenz.fasta -------------------------------------------------- d.16.b.H.influenzae.fasta -------------------------------------------------- d.16.b.P.multocida.fasta -------------------------------------------------- d.16.b.P.multocida.GEN.fasta -------------------------------------------------- d.16.b.X.albilineans.fasta -------------------------------------------------- d.16.b.X.campestris.fasta -------------------------------------------------- d.16.b.X.fastidiosa.GEN.fasta -------------------------------------------------- d.16.b.D.nodosus.fasta -------------------------------------------------- d.16.b.F.tularensis.fasta -------------------------------------------------- d.16.b.B.parapertussis.fasta -------------------------------------------------- d.16.b.B.pertussis.fasta -------------------------------------------------- d.16.b.B.bronchiseptica2.fasta -------------------------------------------------- d.16.b.u.proteobacterium.fasta -------------------------------------------------- d.16.b.B.mallei.fasta -------------------------------------------------- d.16.b.Burkholderia.sp.fasta -------------------------------------------------- d.16.b.N.meningitidis.MD58.GEN -------------------------------------------------- d.16.b.N.meningitidis.Z2491.GE -------------------------------------------------- d.16.b.N.gonorrhoeae.fasta -------------------------------------------------- d.16.b.C.testosteroni.fasta -------------------------------------------------- d.16.b.D.desulfuricans.fasta -------------------------------------------------- d.16.b.M.xanthus.fasta -------------------------------------------------- d.16.b.D.thermophilus.fasta -------------------------------------------------- d.16.b.B.burgdorferi.fasta -------------------------------------------------- d.16.b.B.burgdorferi.GEN.fasta -------------------------------------------------- d.16.b.B.hermsii.fasta -------------------------------------------------- d.16.b.S.aurantia.fasta -------------------------------------------------- d.16.b.T.pallidum.A.fasta -------------------------------------------------- d.16.b.L.illini.fasta -------------------------------------------------- d.16.b.L.interrogans.fasta -------------------------------------------------- d.16.b.C.trachomatis.GEN.fasta -------------------------------------------------- d.16.b.C.trachomatis.L2.fasta -------------------------------------------------- d.16.b.C.muridarum.fasta -------------------------------------------------- d.16.b.C.pneumoniae.AR39.fasta -------------------------------------------------- d.16.b.C.pneumoniae.fasta -------------------------------------------------- d.16.b.C.pneumoniae.J138.fasta -------------------------------------------------- d.16.b.C.pneumoniae.CWL029.fas -------------------------------------------------- d.16.b.C.psittaci.fasta -------------------------------------------------- d.16.b.D.radiodurans.1.fasta -------------------------------------------------- d.16.b.D.radiodurans.GEN.fasta -------------------------------------------------- d.16.b.B.fragilis.fasta -------------------------------------------------- d.16.b.P.gingivalis.fasta -------------------------------------------------- d.16.b.C.vibrioforme.fasta -------------------------------------------------- d.16.b.C.jejuni.fasta -------------------------------------------------- d.16.b.C.jejuni.GEN.fasta -------------------------------------------------- d.16.b.C.sputorum.fasta -------------------------------------------------- d.16.b.H.pylori.26695.GEN.fast -------------------------------------------------- d.16.b.H.pylori.J99.GEN.fasta -------------------------------------------------- d.16.b.H.pylori2.fasta -------------------------------------------------- d.16.b.A.capsulatum.fasta -------------------------------------------------- d.16.b.H.foetida.fasta -------------------------------------------------- d.16.b.A.globiformis.fasta -------------------------------------------------- d.16.b.M.luteus.fasta -------------------------------------------------- d.16.b.Frankia.sp.fasta -------------------------------------------------- d.16.b.S.bottropensis.fasta -------------------------------------------------- d.16.b.S.scabiei.fasta -------------------------------------------------- d.16.b.S.neyagawaensis.fasta -------------------------------------------------- d.16.b.S.diastatochromogenes.f -------------------------------------------------- d.16.b.Streptomyces.sp.fasta -------------------------------------------------- d.16.b.S.acidiscabies.fasta -------------------------------------------------- d.16.b.S.griseus.fasta -------------------------------------------------- d.16.b.S.ornatus.fasta -------------------------------------------------- d.16.b.S.subrutilus.fasta -------------------------------------------------- d.16.b.S.bikiniensis.fasta -------------------------------------------------- d.16.b.S.galbus.fasta -------------------------------------------------- d.16.b.S.hygroscopicus.fasta -------------------------------------------------- d.16.b.S.lincolnensis.fasta -------------------------------------------------- d.16.b.S.coelicolor.fasta -------------------------------------------------- d.16.b.S.tendae.fasta -------------------------------------------------- d.16.b.S.ambofaciens.fasta -------------------------------------------------- d.16.b.S.eurythermus.fasta -------------------------------------------------- d.16.b.S.nodosus.fasta -------------------------------------------------- d.16.b.S.sampsonii.fasta -------------------------------------------------- d.16.b.S.glaucescens.fasta -------------------------------------------------- d.16.b.S.pseudogriseolus.fasta -------------------------------------------------- d.16.b.S.caelestis.fasta -------------------------------------------------- d.16.b.S.bluensis.fasta -------------------------------------------------- d.16.b.S.espinosus.fasta -------------------------------------------------- d.16.b.S.mashuensis.fasta -------------------------------------------------- d.16.b.S.rimosus.fasta -------------------------------------------------- d.16.b.S.limosus.fasta -------------------------------------------------- d.16.b.S.odorifer.fasta -------------------------------------------------- d.16.b.S.felleus.fasta -------------------------------------------------- d.16.b.S.albidoflavus.fasta -------------------------------------------------- d.16.b.S.gougerotii.fasta -------------------------------------------------- d.16.b.S.rutgersensis.fasta -------------------------------------------------- d.16.b.S.intermedius.fasta -------------------------------------------------- d.16.b.S.thermodiastaticus.fas -------------------------------------------------- d.16.b.S.thermoviolaceus.fasta -------------------------------------------------- d.16.b.S.thermovulgaris.1.fast -------------------------------------------------- d.16.b.S.thermovulgaris.2.fast -------------------------------------------------- d.16.b.S.macrosporus.fasta -------------------------------------------------- d.16.b.S.megasporus.fasta -------------------------------------------------- d.16.b.S.thermolineatus.fasta -------------------------------------------------- d.16.b.M.tuberculosis.2.fasta -------------------------------------------------- d.16.b.M.tuberculosis.3.fasta -------------------------------------------------- d.16.b.M.avium.fasta -------------------------------------------------- d.16.b.M.leprae.fasta -------------------------------------------------- d.16.b.M.leprae.GEN.fasta -------------------------------------------------- d.16.b.M.tuberculosis.CDC1551. -------------------------------------------------- d.16.b.M.tuberculosis.GEN.fast -------------------------------------------------- d.16.b.N.asteroides.fasta -------------------------------------------------- d.16.b.R.erythropolis.fasta -------------------------------------------------- d.16.b.C.diphtheriae.fasta -------------------------------------------------- d.16.b.A.israelii.fasta -------------------------------------------------- d.16.b.B.hyodysenteriae.fasta -------------------------------------------------- d.16.b.G.subterranea.fasta -------------------------------------------------- d.16.b.P.miotherma.fasta -------------------------------------------------- d.16.b.B.andersonii.fasta -------------------------------------------------- d.16.b.H.aurantiacus.fasta -------------------------------------------------- d.16.b.Leptospirillium.sp.fast -------------------------------------------------- d.16.b.A.aeolicus.fasta -------------------------------------------------- d.16.b.A.pyrophilus.fasta -------------------------------------------------- d.16.b.T.maritima.fasta -------------------------------------------------- d.16.b.T.maritima.GEN.fasta -------------------------------------------------- n.16.b.T.thermophilus.2.num.fa -------------------------------------------------- s.16.b.T.thermophilus.2.schem. -------------------------------------------------- d.16.b.T.thermophilus.2.fasta -------------------------------------------------- s.16.b.T.thermophilus.1.schem. -------------------------------------------------- n.16.b.T.thermophilus.1.num.fa -------------------------------------------------- d.16.b.T.thermophilus.1.fasta -------------------------------------------------- d.16.b.T.aquaticus.fasta -------------------------------------------------- d.16.b.T.roseum.fasta -------------------------------------------------- d.16.b.P.marina.fasta -------------------------------------------------- d.16.b.P.staleyi.fasta -------------------------------------------------- d.16.b.P.Schlesner.fasta -------------------------------------------------- d.16.b.G.obscuriglobus.1.fasta -------------------------------------------------- d.16.b.I.pallida.fasta -------------------------------------------------- d.16.a.P.abyssi.fasta -------------------------------------------------- d.16.a.P.horikoshii.fasta -------------------------------------------------- d.16.a.P.furiosus.fasta -------------------------------------------------- d.16.a.T.celer.fasta -------------------------------------------------- d.16.a.A.fulgidus.fasta -------------------------------------------------- d.16.a.N.equitans.fasta -------------------------------------------------- d.16.a.A.pernix.K1.fasta -------------------------------------------------- d.16.a.P.occultum.fasta -------------------------------------------------- d.16.a.T.tenax.fasta -------------------------------------------------- d.16.a.S.acidocaldarius.fasta -------------------------------------------------- d.16.a.S.solfataricus.fasta -------------------------------------------------- d.16.a.S.solfataricus.2.fasta -------------------------------------------------- d.16.a.M.thermautotrophicus.1. -------------------------------------------------- d.16.a.M.thermautotrophicus.2. -------------------------------------------------- d.16.a.M.formicicum.fasta -------------------------------------------------- d.16.a.M.vannielii.fasta -------------------------------------------------- d.16.a.H.marismortui.rrnA.fast -------------------------------------------------- d.16.a.H.marismortui.rrnB.fast -------------------------------------------------- d.16.a.Halobacterium.sp.fasta -------------------------------------------------- d.16.a.N.bangense.fasta -------------------------------------------------- d.16.a.N.innermongoliae.fasta -------------------------------------------------- d.16.a.H.volcanii.fasta -------------------------------------------------- d.16.a.M.hungatei.fasta -------------------------------------------------- d.16.a.P.torridus.fasta -------------------------------------------------- d.16.a.T.acidophilum.fasta -------------------------------------------------- a.16.e.G.ardeae.fasta ---------------------------------------------CAUCC d.16.e.G.intestinalis.fasta ---------------------------------------------CAUCC a.16.e.G.muris.fasta ---------------------------------------------CAUCC d.16.e.A.bracteata.fasta ---------------------------------------------CACCA d.16.e.Glomus.sp.W3349.fasta ------------------------------------------------NN d.16.e.S.cerradensis.fasta ------------------------------------------------NN a.16.e.G.intraradices.fasta ------------------------------------------------NN d.16.e.S.culisetae.fasta ------------------------------------------------NN a.16.e.P.balamuthi.fasta AGAGGGUCGCACUUGUCUUAAUUCACAGUGCCCCGGAACUGAGGCUGUUC d.16.e.A.flavus.fasta ------------------------------------------------NN d.16.e.T.caries.fasta ------------------------------------------------NN d.16.e.M.circinelloides.fasta ------------------------------------------------NN d.16.e.M.racemosus.fasta ------------------------------------------------UA d.16.e.R.oryzae.fasta ------------------------------------------------NN a.16.e.M.edulis.fasta --------------------------------------------CAACCU a.16.e.P.magellanicus.fasta --------------------------------------------CAACCU b.16.e.E.granulosus.fasta ---------------------------------------------UACCU d.16.e.D.melanogaster.fasta ---------------------------------------------AUUCU b.16.e.C.koreana.fasta ---------------------------------------------UCCCU b.16.e.A.australis.fasta ---------------------------------------------UACCU b.16.e.O.utahensis.fasta ------------------------------------------------CU b.16.e.A.salina.fasta ---------------------------------------------UACCU d.16.e.M.musculus.fasta ---------------------------------------------UACCU d.16.e.R.norvegicus.fasta ---------------------------------------------UACCU d.16.e.H.sapiens.fasta ---------------------------------------------UACCU d.16.e.O.cuniculus.fasta ---------------------------------------------UACCU d.16.e.X.borealis.fasta ---------------------------------------------UACCU d.16.e.X.laevis.fasta ---------------------------------------------UACCU d.16.e.A.castellanii.fasta ---------------------------------------------CGACU d.16.e.B.mandrillaris.fasta ---------------------------------------------NNNNN d.16.e.P.falciparum.A.fasta ---------------------------------------------AACCU d.16.e.P.falciparum.S.fasta ---------------------------------------------AACCU d.16.e.P.vivax.A.fasta ---------------------------------------------AACCU d.16.e.P.vivax.O.fasta ---------------------------------------------AACCU d.16.e.P.vivax.S.fasta ---------------------------------------------AACCU d.16.e.E.histolytica.fasta ---------------------------------------------UAUCU d.16.e.I.hoferi.fasta --------------------------------------------CAACCU d.16.e.Dermocystidium.sp.fasta --------------------------------------------CAACCU d.16.e.S.destruens.fasta --------------------------------------------NAACCU d.16.e.A.unguiculata.fasta --------------------------------------------NAACCU d.16.e.D.grandis.fasta --------------------------------------------NAACCU d.16.e.A.macrogynus.fasta ---------------------------------------------UACCU d.16.e.B.emersonii.fasta ---------------------------------------------UACCU d.16.e.C.albicans.fasta ---------------------------------------------UAUCU d.16.e.S.cerevisiae.fasta ---------------------------------------------UAUCU d.16.e.N.crassa.fasta ---------------------------------------------UACCU d.16.e.P.anserina.fasta ---------------------------------------------UACCU d.16.e.C.immitis.fasta ---------------------------------------------AACCU d.16.e.L.major.fasta ---------------------------------------------NAUCU d.16.e.T.cruzi.fasta ---------------------------------------------AACCU d.16.e.T.brucei.fasta ---------------------------------------------GAUCU d.16.e.P.carinii.fasta ---------------------------------------------UACCU d.16.e.C.neoformans.fasta ---------------------------------------------UACCU d.16.e.Fungus.sp.QPX.fasta ---------------------------------------------UACCU d.16.e.U.maydis.fasta ---------------------------------------------UACCU d.16.e.M.leidyi.fasta --------------------------------------------NAACCU d.16.e.T.cystophora.fasta --------------------------------------------NAACCU d.16.e.M.prolifera.fasta --------------------------------------------NAACCU d.16.e.P.haeckeli.fasta --------------------------------------------NAACCU d.16.e.E.rotunda.fasta ---------------------------------------------AACCU d.16.e.P.chromatophora.fasta ---------------------------------------------AACCU d.16.e.A.majus.fasta ---------------------------------------------NNNNN d.16.e.S.indicum.fasta ---------------------------------------------NNNNN d.16.e.D.grandiflora.fasta ---------------------------------------------NNNNN d.16.e.Pla.lanceolata.fasta ---------------------------------------------NNNNN d.16.e.N.tabacum.fasta ---------------------------------------------NNNNN d.16.e.A.thaliana.fasta ---------------------------------------------UACCU d.16.e.S.alba.fasta ---------------------------------------------UACCU d.16.e.S.tuberosum.fasta ---------------------------------------------UACCU d.16.e.F.x.ananassa.fasta ---------------------------------------------UACCU d.16.e.G.max.fasta ---------------------------------------------UACUU d.16.e.O.sativa.fasta ---------------------------------------------UACCU d.16.e.Z.mays.fasta ---------------------------------------------UACCU d.16.e.A.verticilliflorum.fast ---------------------------------------------NNNNN d.16.e.G.spirotaenia.fasta ---------------------------------------------AACCU d.16.e.Staurastrum.sp.M752.fas ---------------------------------------------AACCU d.16.e.C.paradoxa.fasta ---------------------------------------------AACCU d.16.e.G.nostochinearum.fasta ---------------------------------------------AACCU d.16.e.G.wittrockiana.fasta ---------------------------------------------AACCU d.16.e.C.luteoviridis.fasta ---------------------------------------------AACCU d.16.e.O.longa.fasta ---------------------------------------------AACCU d.16.e.P.weissei.fasta ---------------------------------------------AACCU d.16.e.C.citrina.fasta ---------------------------------------------AACCU d.16.e.G.steinii.fasta ---------------------------------------------AACCU d.16.e.Ple.lanceolata.fasta ---------------------------------------------AACCU d.16.e.O.quadricornutus.fasta ---------------------------------------------AACCU d.16.e.S.lemnae.fasta ---------------------------------------------AACCU d.16.e.S.mytilus.fasta ---------------------------------------------AACCU d.16.e.E.mobilis.fasta ---------------------------------------------AACCU d.16.e.O.granulifera.1.fasta ---------------------------------------------AACCU d.16.e.O.granulifera.2.fasta ---------------------------------------------AACCU d.16.e.U.gallina.fasta ---------------------------------------------AACCU d.16.e.U.pisces.fasta ---------------------------------------------AACCU d.16.e.P.lepisma.fasta ---------------------------------------------AACCU d.16.e.U.grandis.fasta ---------------------------------------------AACCU d.16.e.B.coli.fasta ---------------------------------------------AACCU d.16.e.E.aediculatus.fasta ---------------------------------------------AAUCU d.16.e.T.thermophila.fasta ---------------------------------------------AACCU d.16.e.Bangia.sp.NWT.fasta --------------------------------------------CAACCU d.16.e.Bangia.sp.VIS7.fasta --------------------------------------------CAACCU d.16.e.E.carnea.fasta ---------------------------------------------CAACC d.16.e.R.parvula.fasta ---------------------------------------------NNNNN d.16.e.C.coeruleus.fasta --------------------------------------------NNNNNG d.16.e.P.aerugineum.1.fasta --------------------------------------------NAACCU d.16.e.R.maculata.fasta ---------------------------------------------NNNNN d.16.e.A.ambigua.fasta --------------------------------------------NAACCU d.16.e.A.baicalensis.fasta --------------------------------------------NAACCU d.16.e.S.nipponica.fasta --------------------------------------------NAACCU d.16.e.C.radiatus.fasta --------------------------------------------NAACCU d.16.e.C.criophilum.fasta --------------------------------------------NAACCU d.16.e.A.capitellata.fasta --------------------------------------------NAACCU d.16.e.S.pupula.fasta --------------------------------------------NNNNCU d.16.e.T.antarctica.fasta --------------------------------------------NAACCU d.16.e.E.triangulatum.fasta --------------------------------------------NAACCU d.16.e.A.bongranii.fasta --------------------------------------------NAACCU d.16.e.Pseudogomphonema.sp.fas --------------------------------------------NAACCU d.16.e.D.tenue.fasta --------------------------------------------NNNCCU d.16.e.G.marina.fasta --------------------------------------------NAACCU d.16.e.Thalassionema.sp.fasta --------------------------------------------NAACCU d.16.e.R.belgicae.fasta --------------------------------------------NAACCU d.16.e.Undatella.sp.fasta --------------------------------------------NAACCU d.16.e.C.belgica.fasta --------------------------------------------NAACCU d.16.e.O.sinensis.fasta --------------------------------------------NAACCU d.16.e.D.brightwellii.fasta --------------------------------------------NAACCU d.16.e.L.undulatum.fasta --------------------------------------------NAACCU d.16.e.T.eccentrica.fasta --------------------------------------------NAACCU d.16.e.T.pseudonana.fasta --------------------------------------------NAACCU d.16.e.S.costatum.fasta --------------------------------------------NAACCU d.16.e.P.laevis.fasta --------------------------------------------NAACCU d.16.e.L.borealis.fasta --------------------------------------------NAACCU d.16.e.P.pseudodenticulata.fas --------------------------------------------NAACCU d.16.e.B.mediterranea.fasta --------------------------------------------NAACCU d.16.e.B.pacifica.fasta --------------------------------------------NAACCU d.16.e.L.minuta.fasta --------------------------------------------NAACCU d.16.e.L.danicus.fasta --------------------------------------------NAACCU d.16.e.Chaetoceros.sp.fasta --------------------------------------------NAACCU d.16.e.A.invadans.fasta ----------------------------------------------NNNN d.16.e.L.giganteum.fasta --------------------------------------------NAACCU d.16.e.M.varians.fasta --------------------------------------------NAACCU d.16.e.B.hominis.fasta ------------------------------------------GCUUAUCU d.16.e.P.marinus.fasta ---------------------------------------------AACCU d.16.e.T.gondii.fasta ---------------------------------------------AACCU d.16.e.A.fundyense.fasta ---------------------------------------------AACCU d.16.e.B.bigemina.fasta -------------------------------------UGAAUAGCAACCU d.16.e.B.canis.fasta -------------------------------------NNNNNNNNAACCU d.16.e.Babesia.sp.OKD.fasta -------------------------------------NNNNNNNNNNCCU d.16.e.B.microti.1.fasta -------------------------------------NNNNNNNNAACCU d.16.e.B.microti.2.fasta -------------------------------------NNNNNNNNAACCU d.16.e.B.microti.3.fasta -------------------------------------NNNNNNNNAACCU d.16.e.B.microti.4.fasta -------------------------------------NNNNNNNNAACCU d.16.e.B.microti.5.fasta -------------------------------------NNNNNNNNNNNNN d.16.e.B.rodhaini.fasta -------------------------------------NNNNNNNNAACCU d.16.e.B.gibsoni.fasta -------------------------------------NNNNNNNNNNNNN d.16.e.B.bovis.fasta -------------------------------------NNNNNNNNNNNNN d.16.e.J.libera.fasta --------------------------------------------NAACCU d.16.e.R.americana.fasta --------------------------------------------NAACCU d.16.e.B.ostreae.fasta ---------------------------------------------NNNNN d.16.e.A.dasyae.fasta --------------------------------------------CAACCU d.16.e.A.hermannii.fasta ---------------------------------------------CACCU d.16.e.N.helminthoides.fasta --------------------------------------------CAACCU d.16.e.B.gelatinosum.fasta ---------------------------------------------CACCU d.16.e.N.tortuosa.fasta ---------------------------------------------AACCU d.16.e.T.hispida.fasta ---------------------------------------------NNNNN d.16.e.T.violacea.4.fasta ---------------------------------------------NNNNN d.16.e.T.violacea.1.fasta ---------------------------------------------CACCU d.16.e.T.violacea.2.fasta ---------------------------------------------NNNNN d.16.e.N.shawii.fasta ---------------------------------------------NNNNN d.16.e.B.investiens.fasta ---------------------------------------------NNNNN d.16.e.B.macrosporum.fasta ---------------------------------------------CACCU d.16.e.A.plicata.fasta --------------------------------------------CAACCU d.16.e.C.officinalis.fasta --------------------------------------------CAACCU d.16.e.R.carriebowensis.fasta ---------------------------------------------CACCU d.16.e.B.hamifera.fasta --------------------------------------------CAACCU d.16.e.G.vagum.fasta --------------------------------------------CAACCU d.16.e.C.crispus.fasta --------------------------------------------CAACCU d.16.e.H.plana.fasta ---------------------------------------------CACCU d.16.e.R.leptophylla.fasta ---------------------------------------------CACCU d.16.e.P.pulvinata.fasta ---------------------------------------------CACCU d.16.e.C.rubrum.fasta --------------------------------------------CACCCU d.16.e.Gracilariopsis.sp.fasta --------------------------------------------CAACCU d.16.e.B.moritziana.fasta ---------------------------------------------CACCU d.16.e.H.rubra.fasta --------------------------------------------CAACCU d.16.e.D.grisea.fasta --------------------------------------------CAACCU d.16.e.N.fowleri.fasta ---------------------------------------------NNNNN d.16.e.N.gruberi.fasta ---------------------------------------------UACCU a.16.e.Hexamita.sp.fasta ---------------------------------------------UACCU d.16.e.T.foetus.fasta ---------------------------------------------UACUU d.16.e.A.khaliulini.fasta -------------------------------------------UCCACCA d.16.e.E.aedis.fasta ---------------------------------------------CACCA d.16.e.A.connecticus.fasta ---------------------------------------------CACCA d.16.e.I.barri.fasta ---------------------------------------------CACCA d.16.e.A.ferocious.fasta ---------------------------------------------CACCA d.16.e.Amblyospora.sp.fasta ---------------------------------------------CACCA d.16.e.C.lunata.fasta ---------------------------------------------CACCA d.16.e.P.anophelis.fasta ---------------------------------------------CACCA d.16.e.Hazardia.sp.fasta ---------------------------------------------CACCA d.16.e.H.milleri.fasta ---------------------------------------------CACCA d.16.e.P.simulii.fasta ---------------------------------------------CACCA d.16.e.W.palustris.fasta ---------------------------------------------CACCA d.16.e.Nosema.sp.03.fasta ---------------------------------------------CACCA d.16.e.Nosema.sp.05.fasta ---------------------------------------------CACCA d.16.e.Endoreticulatus.sp.fast ---------------------------------------------CACCA d.16.e.Nosema.sp.02.fasta ---------------------------------------------CACCA d.16.e.N.spodopterae.fasta ---------------------------------------------CACCA d.16.e.N.trichoplusiae.fasta ---------------------------------------------CACCA d.16.e.N.bombycis.27.fasta ---------------------------------------------CACCA d.16.e.N.bombycis.02.fasta ---------------------------------------------CACCA d.16.e.V.imperfecta.fasta ---------------------------------------------CACCA d.16.e.N.furnacalis.fasta ---------------------------------------------CACCA d.16.e.Microsporidium57864.fas ---------------------------------------------CACCA d.16.e.Vairimorpha.sp.C21.fast ---------------------------------------------CACCA d.16.e.N.oulemae.fasta ---------------------------------------------CACCA d.16.e.N.necatrix.fasta ---------------------------------------------CACCA d.16.e.V.necatrix.fasta ---------------------------------------------CACCA d.16.e.N.apis.fasta ---------------------------------------------CACCA d.16.e.O.occidentalis.fasta ---------------------------------------------CACCA d.16.e.Microsporidium.sp.DP119 ---------------------------------------------CACCA d.16.e.V.corneae.fasta ---------------------------------------------CACCA d.16.e.A.michaelis.fasta ---------------------------------------------NNNNN d.16.e.T.contejeani.fasta ---------------------------------------------CACCA d.16.e.E.hellem.fasta ---------------------------------------------CACCA d.16.e.Encephalitozoon.sp.fast ---------------------------------------------CACCA d.16.e.E.cuniculi.fasta ---------------------------------------------CACCA d.16.e.O.colligata.fasta ---------------------------------------------CACCA d.16.e.E.salmonis.fasta ---------------------------------------------CACCA d.16.e.N.salmonis.fasta ---------------------------------------------CACCA d.16.e.Enterocytozoonidae.sp.f ---------------------------------------------NNNNN d.16.e.E.bieneusi.fasta ---------------------------------------------CACCA d.16.e.B.algerae.fasta ---------------------------------------------CACCA d.16.e.T.solenopsae.fasta ---------------------------------------GAAUUCCACCA d.16.e.V.acridophagus.fasta ---------------------------------------------CACCA d.16.e.Bacillidium.sp.fasta ---------------------------------------------CACCA d.16.e.P.cristatellae.fasta ---------------------------------------------CACCA d.16.e.Pleistophora.sp.fasta ---------------------------------------------CACCA d.16.e.O.operophterae.fasta ---------------------------------------------CACCA d.16.e.F.magnivora.fasta ---------------------------------------------CACCA d.16.e.G.atherinae.fasta ---------------------------------------------CACCA d.16.e.Ichthyosporidium.sp.fas ---------------------------------------------CACCA d.16.e.L.acerinae.fasta ---------------------------------------------CACCA d.16.e.H.anguillarum.fasta ---------------------------------------------CACCA d.16.e.P.mirandellae.fasta ---------------------------------------------CACCA d.16.e.T.hominis.fasta ---------------------------------------------CACCA d.16.e.V.culicis.fasta ---------------------------------------------CACCA d.16.e.P.hippoglossoideos.fast ---------------------------------------------CACCA d.16.e.Microgemma.sp.fasta ---------------------------------------------CGCCA d.16.e.S.lophii.fasta ---------------------------------------------CACCA d.16.e.Pleistophora.sp.LS.fast ---------------------------------------------CACCA d.16.e.D.gammarellum.fasta ---------------------------------------------NNNNN d.16.e.M.prosopium.fasta ---------------------------------------------NNNNN d.16.e.A.scoticae.fasta ---------------------------------------------CACCA d.16.e.P.whitei.fasta ---------------------------------------------NNNNN a.16.c.C.coccineum.fasta -------------------------------------------------- a.16.c.C.ruber.fasta -------------------------------------------------- d.16.c.N.tabacum.fasta -------------------------------------------------- d.16.c.S.oleracea.fasta -------------------------------------------------- d.16.c.Z.mays.fasta -------------------------------------------------- d.16.c.M.polymorpha.fasta -------------------------------------------------- d.16.c.R.communis.fasta -------------------------------------------------- d.16.c.C.vulgaris.fasta -------------------------------------------------- d.16.c.P.wickerhamii.fasta -------------------------------------------------- d.16.c.P.minor.fasta -------------------------------------------------- d.16.c.N.olivacea.fasta -------------------------------------------------- d.16.c.P.parkeae.fasta -------------------------------------------------- d.16.c.C.reinhardtii.fasta -------------------------------------------------- b.16.m.A.castellanii.fasta -------------------------------------------------- d.16.c.P.thurberi.fasta -------------------------------------------------- b.16.m.C.crispus.fasta -------------------------------------------------- d.16.c.T.gondii.fasta -------------------------------------------------- b.16.m.N.crassa.fasta -------------------------------------------------- b.16.m.P.anserina.fasta -------------------------------------------------- b.16.m.P.chrysogenum.fasta -------------------------------------------------- b.16.m.E.nidulans.fasta -------------------------------------------------- b.16.m.S.cerevisiae.fasta -------------------------------------------------- b.16.m.W.saturnus.m.fasta -------------------------------------------------- b.16.m.P.minor.fasta -------------------------------------------------- d.16.c.P.falciparum.fasta -------------------------------------------------- d.16.c.B.bovis.fasta -------------------------------------------------- b.16.m.T.pyriformis.fasta -------------------------------------------------- d.16.m.S.sinuspaulianus.fasta -------------------------------------------------- b.16.m.P.tetraurelia.fasta -------------------------------------------------- b.16.m.D.discoideum.fasta -------------------------------------------------- d.16.m.P.polycephalum.fasta -------------------------------------------------- b.16.m.P.littoralis.fasta -------------------------------------------------- b.16.m.P.wickerhamii.fasta -------------------------------------------------- d.16.c.H.africana.fasta -------------------------------------------------- d.16.c.C.fragile.fasta -------------------------------------------------- d.16.c.C.sertularioides.fasta -------------------------------------------------- d.16.c.C.humicola.fasta -------------------------------------------------- d.16.c.P.uvella.fasta -------------------------------------------------- a.16.c.G.nostochinearum.fasta -------------------------------------------------- a.16.c.G.wittrockiana.fasta -------------------------------------------------- d.16.c.C.paradoxa.fasta -------------------------------------------------- d.16.y.C.paradoxa.fasta -------------------------------------------------- d.16.c.Cryptomonas.sp.fasta -------------------------------------------------- d.16.c.P.palmata.fasta -------------------------------------------------- d.16.c.H.akashiwo.fasta -------------------------------------------------- d.16.c.S.pseudocostatum.fasta -------------------------------------------------- d.16.c.P.littoralis.fasta -------------------------------------------------- d.16.c.C.caldarium.fasta -------------------------------------------------- a.16.c.E.huxleyi.fasta -------------------------------------------------- d.16.c.E.gracilis.fasta -------------------------------------------------- d.16.b.Anabaena.sp.fasta -------------------------------------------------- d.16.b.Chlorogloeopsis.PCC7518 -------------------------------------------------- d.16.b.Synechococcus.sp.fasta -------------------------------------------------- d.16.b.Synechocystis.PCC6803.G -------------------------------------------------- d.16.b.O.agardhii.fasta -------------------------------------------------- d.16.b.Pleurocapsa.7516.fasta -------------------------------------------------- d.16.b.M.aeruginosa.fasta -------------------------------------------------- b.16.m.C.reinhardtii.fasta -------------------------------------------------- d.16.m.C.eugametos.fasta -------------------------------------------------- b.16.m.M.senile.fasta -------------------------------------------------- d.16.b.S.pneumoniae.fasta -------------------------------------------------- d.16.b.S.pyogenes.fasta -------------------------------------------------- d.16.b.B.anthracis.fasta -------------------------------------------------- d.16.b.B.cereus.1.fasta -------------------------------------------------- d.16.b.E.faecalis.fasta -------------------------------------------------- d.16.b.E.faecium2.fasta -------------------------------------------------- d.16.b.L.monocytogenes.fasta -------------------------------------------------- d.16.b.B.subtilis.fasta -------------------------------------------------- d.16.b.B.subtilis.GEN.fasta -------------------------------------------------- d.16.b.B.halodurans.fasta -------------------------------------------------- d.16.b.S.aureus.fasta -------------------------------------------------- d.16.b.S.aureus.GEN.fasta -------------------------------------------------- d.16.b.L.lactis.GEN.fasta -------------------------------------------------- d.16.b.S.pyogenes.GEN.fasta -------------------------------------------------- d.16.b.L.acidophilus.fasta -------------------------------------------------- d.16.b.M.capricolum.fasta -------------------------------------------------- d.16.b.M.mycoides.fasta -------------------------------------------------- d.16.b.E.rhusiopathiae.fasta -------------------------------------------------- d.16.b.C.innocuum.fasta -------------------------------------------------- d.16.b.M.genitalium.fasta -------------------------------------------------- d.16.b.M.pneumoniae.GEN.fasta -------------------------------------------------- d.16.b.M.pneumoniae.fasta -------------------------------------------------- d.16.b.M.gallisepticum.fasta -------------------------------------------------- d.16.b.U.urealyticum.fasta -------------------------------------------------- d.16.b.U.urealyticum.GEN.fasta -------------------------------------------------- d.16.b.M.hyopneumoniae.fasta -------------------------------------------------- d.16.b.F.necrophorum.fasta -------------------------------------------------- d.16.b.F.nucleatum.fasta -------------------------------------------------- d.16.b.S.moniliformis.fasta -------------------------------------------------- d.16.b.C.botulinum.F.fasta -------------------------------------------------- d.16.b.C.tetani.fasta -------------------------------------------------- d.16.b.C.perfringens.fasta -------------------------------------------------- d.16.b.C.difficile.fasta -------------------------------------------------- d.16.b.E.brachy.fasta -------------------------------------------------- d.16.b.Epulopiscium.sp.fasta -------------------------------------------------- d.16.b.H.chlorum.fasta -------------------------------------------------- b.16.m.G.max.fasta -------------------------------------------------- b.16.m.O.berteriana.fasta -------------------------------------------------- b.16.m.S.cereale.fasta -------------------------------------------------- b.16.m.T.aestivum.fasta -------------------------------------------------- d.16.m.Z.mays.fasta -------------------------------------------------- b.16.m.M.polymorpha.fasta -------------------------------------------------- b.16.m.N.olivacea.fasta -------------------------------------------------- d.16.b.G.liquefaciens.fasta -------------------------------------------------- d.16.b.B.japonicum.fasta -------------------------------------------------- d.16.b.R.acidophilus.fasta -------------------------------------------------- d.16.b.A.caulinodans.fasta -------------------------------------------------- d.16.b.B.quintana.fasta -------------------------------------------------- d.16.b.M.loti.fasta -------------------------------------------------- d.16.b.A.tumefaciens.fasta -------------------------------------------------- d.16.b.B.bacilliformis.fasta -------------------------------------------------- d.16.b.B.henselae.fasta -------------------------------------------------- d.16.b.B.melitensis.fasta -------------------------------------------------- d.16.b.R.orientis.fasta -------------------------------------------------- d.16.b.Methylobacterium.sp.fas -------------------------------------------------- d.16.b.R.bellii.fasta -------------------------------------------------- d.16.b.R.felis.URRWXCal2.fasta -------------------------------------------------- d.16.b.R.prowazekii.fasta -------------------------------------------------- d.16.b.R.prowazekii.GEN.fasta -------------------------------------------------- d.16.b.R.rickettsii.fasta -------------------------------------------------- d.16.b.A.calcoaceticus.fasta -------------------------------------------------- d.16.b.P.pacificensis.fasta -------------------------------------------------- d.16.b.C.marismortui.fasta -------------------------------------------------- d.16.b.H.halodenitrificans.fas -------------------------------------------------- d.16.b.P.aeruginosa.fasta -------------------------------------------------- d.16.b.P.aeruginosa.GEN.fasta -------------------------------------------------- d.16.b.Pseudomonas.sp.fasta -------------------------------------------------- d.16.b.P.putida.fasta -------------------------------------------------- d.16.b.C.burnetii.fasta -------------------------------------------------- d.16.b.M.capsulatus.fasta -------------------------------------------------- d.16.b.L.pneumophila.1.fasta -------------------------------------------------- d.16.b.L.pneumophila.2.fasta -------------------------------------------------- d.16.b.A.vinosum.fasta -------------------------------------------------- d.16.b.Beggiatoa.sp.fasta -------------------------------------------------- d.16.b.A.hydrophila.fasta -------------------------------------------------- d.16.b.S.putrefaciens.fasta -------------------------------------------------- d.16.b.C.freundii.fasta -------------------------------------------------- d.16.b.S.dysenteriae.1.fasta -------------------------------------------------- d.16.b.K.pneumoniae.fasta -------------------------------------------------- d.16.b.P.shigelloides.fasta -------------------------------------------------- d.16.b.Y.pestis.fasta -------------------------------------------------- d.16.b.Y.pseudotuberculosis.fa -------------------------------------------------- d.16.b.S.dysenteriae.2.fasta -------------------------------------------------- d.16.b.E.coli.0157G.GEN.fasta -------------------------------------------------- d.16.b.E.coli.EDL.GEN.fasta -------------------------------------------------- d.16.b.E.coli.fasta -------------------------------------------------- d.16.b.E.coli.K12.GEN.fasta -------------------------------------------------- h.16.b.E.coli.hlxnum.fasta -------------------------------------------------- m.16.b.E.coli.mhg.fasta -------------------------------------------------- s.16.b.E.coli.schem.fasta -------------------------------------------------- d.16.b.S.typhimurium.fasta -------------------------------------------------- d.16.b.S.marcescens.fasta -------------------------------------------------- d.16.b.E.tarda.fasta -------------------------------------------------- d.16.b.P.vulgaris.fasta -------------------------------------------------- d.16.b.V.cholerae4.fasta -------------------------------------------------- d.16.b.V.cholerae5.fasta -------------------------------------------------- d.16.b.V.cholerae2.fasta -------------------------------------------------- d.16.b.V.cholerae6.fasta -------------------------------------------------- d.16.b.V.cholerae.fasta -------------------------------------------------- d.16.b.V.cholerae.GEN.fasta -------------------------------------------------- d.16.b.V.parahaemolyticus.fast -------------------------------------------------- d.16.b.H.influenzae7.fasta -------------------------------------------------- d.16.b.H.influenzae8.fasta -------------------------------------------------- d.16.b.H.influenzae6.fasta -------------------------------------------------- d.16.b.H.influenz.fasta -------------------------------------------------- d.16.b.H.influenzae.fasta -------------------------------------------------- d.16.b.P.multocida.fasta -------------------------------------------------- d.16.b.P.multocida.GEN.fasta -------------------------------------------------- d.16.b.X.albilineans.fasta -------------------------------------------------- d.16.b.X.campestris.fasta -------------------------------------------------- d.16.b.X.fastidiosa.GEN.fasta -------------------------------------------------- d.16.b.D.nodosus.fasta -------------------------------------------------- d.16.b.F.tularensis.fasta -------------------------------------------------- d.16.b.B.parapertussis.fasta -------------------------------------------------- d.16.b.B.pertussis.fasta -------------------------------------------------- d.16.b.B.bronchiseptica2.fasta -------------------------------------------------- d.16.b.u.proteobacterium.fasta -------------------------------------------------- d.16.b.B.mallei.fasta -------------------------------------------------- d.16.b.Burkholderia.sp.fasta -------------------------------------------------- d.16.b.N.meningitidis.MD58.GEN -------------------------------------------------- d.16.b.N.meningitidis.Z2491.GE -------------------------------------------------- d.16.b.N.gonorrhoeae.fasta -------------------------------------------------- d.16.b.C.testosteroni.fasta -------------------------------------------------- d.16.b.D.desulfuricans.fasta -------------------------------------------------- d.16.b.M.xanthus.fasta -------------------------------------------------- d.16.b.D.thermophilus.fasta -------------------------------------------------- d.16.b.B.burgdorferi.fasta -------------------------------------------------- d.16.b.B.burgdorferi.GEN.fasta -------------------------------------------------- d.16.b.B.hermsii.fasta -------------------------------------------------- d.16.b.S.aurantia.fasta -------------------------------------------------- d.16.b.T.pallidum.A.fasta -------------------------------------------------- d.16.b.L.illini.fasta -------------------------------------------------- d.16.b.L.interrogans.fasta -------------------------------------------------- d.16.b.C.trachomatis.GEN.fasta -------------------------------------------------- d.16.b.C.trachomatis.L2.fasta -------------------------------------------------- d.16.b.C.muridarum.fasta -------------------------------------------------- d.16.b.C.pneumoniae.AR39.fasta -------------------------------------------------- d.16.b.C.pneumoniae.fasta -------------------------------------------------- d.16.b.C.pneumoniae.J138.fasta -------------------------------------------------- d.16.b.C.pneumoniae.CWL029.fas -------------------------------------------------- d.16.b.C.psittaci.fasta -------------------------------------------------- d.16.b.D.radiodurans.1.fasta -------------------------------------------------- d.16.b.D.radiodurans.GEN.fasta -------------------------------------------------- d.16.b.B.fragilis.fasta -------------------------------------------------- d.16.b.P.gingivalis.fasta -------------------------------------------------- d.16.b.C.vibrioforme.fasta -------------------------------------------------- d.16.b.C.jejuni.fasta -------------------------------------------------- d.16.b.C.jejuni.GEN.fasta -------------------------------------------------- d.16.b.C.sputorum.fasta -------------------------------------------------- d.16.b.H.pylori.26695.GEN.fast -------------------------------------------------- d.16.b.H.pylori.J99.GEN.fasta -------------------------------------------------- d.16.b.H.pylori2.fasta -------------------------------------------------- d.16.b.A.capsulatum.fasta -------------------------------------------------- d.16.b.H.foetida.fasta -------------------------------------------------- d.16.b.A.globiformis.fasta -------------------------------------------------- d.16.b.M.luteus.fasta -------------------------------------------------- d.16.b.Frankia.sp.fasta -------------------------------------------------- d.16.b.S.bottropensis.fasta -------------------------------------------------- d.16.b.S.scabiei.fasta -------------------------------------------------- d.16.b.S.neyagawaensis.fasta -------------------------------------------------- d.16.b.S.diastatochromogenes.f -------------------------------------------------- d.16.b.Streptomyces.sp.fasta -------------------------------------------------- d.16.b.S.acidiscabies.fasta -------------------------------------------------- d.16.b.S.griseus.fasta -------------------------------------------------- d.16.b.S.ornatus.fasta -------------------------------------------------- d.16.b.S.subrutilus.fasta -------------------------------------------------- d.16.b.S.bikiniensis.fasta -------------------------------------------------- d.16.b.S.galbus.fasta -------------------------------------------------- d.16.b.S.hygroscopicus.fasta -------------------------------------------------- d.16.b.S.lincolnensis.fasta -------------------------------------------------- d.16.b.S.coelicolor.fasta -------------------------------------------------- d.16.b.S.tendae.fasta -------------------------------------------------- d.16.b.S.ambofaciens.fasta -------------------------------------------------- d.16.b.S.eurythermus.fasta -------------------------------------------------- d.16.b.S.nodosus.fasta -------------------------------------------------- d.16.b.S.sampsonii.fasta -------------------------------------------------- d.16.b.S.glaucescens.fasta -------------------------------------------------- d.16.b.S.pseudogriseolus.fasta -------------------------------------------------- d.16.b.S.caelestis.fasta -------------------------------------------------- d.16.b.S.bluensis.fasta -------------------------------------------------- d.16.b.S.espinosus.fasta -------------------------------------------------- d.16.b.S.mashuensis.fasta -------------------------------------------------- d.16.b.S.rimosus.fasta -------------------------------------------------- d.16.b.S.limosus.fasta -------------------------------------------------- d.16.b.S.odorifer.fasta -------------------------------------------------- d.16.b.S.felleus.fasta -------------------------------------------------- d.16.b.S.albidoflavus.fasta -------------------------------------------------- d.16.b.S.gougerotii.fasta -------------------------------------------------- d.16.b.S.rutgersensis.fasta -------------------------------------------------- d.16.b.S.intermedius.fasta -------------------------------------------------- d.16.b.S.thermodiastaticus.fas -------------------------------------------------- d.16.b.S.thermoviolaceus.fasta -------------------------------------------------- d.16.b.S.thermovulgaris.1.fast -------------------------------------------------- d.16.b.S.thermovulgaris.2.fast -------------------------------------------------- d.16.b.S.macrosporus.fasta -------------------------------------------------- d.16.b.S.megasporus.fasta -------------------------------------------------- d.16.b.S.thermolineatus.fasta -------------------------------------------------- d.16.b.M.tuberculosis.2.fasta -------------------------------------------------- d.16.b.M.tuberculosis.3.fasta -------------------------------------------------- d.16.b.M.avium.fasta -------------------------------------------------- d.16.b.M.leprae.fasta -------------------------------------------------- d.16.b.M.leprae.GEN.fasta -------------------------------------------------- d.16.b.M.tuberculosis.CDC1551. -------------------------------------------------- d.16.b.M.tuberculosis.GEN.fast -------------------------------------------------- d.16.b.N.asteroides.fasta -------------------------------------------------- d.16.b.R.erythropolis.fasta -------------------------------------------------- d.16.b.C.diphtheriae.fasta -------------------------------------------------- d.16.b.A.israelii.fasta -------------------------------------------------- d.16.b.B.hyodysenteriae.fasta -------------------------------------------------- d.16.b.G.subterranea.fasta -------------------------------------------------- d.16.b.P.miotherma.fasta -------------------------------------------------- d.16.b.B.andersonii.fasta -------------------------------------------------- d.16.b.H.aurantiacus.fasta -------------------------------------------------- d.16.b.Leptospirillium.sp.fast -------------------------------------------------- d.16.b.A.aeolicus.fasta -------------------------------------------------- d.16.b.A.pyrophilus.fasta -------------------------------------------------- d.16.b.T.maritima.fasta -------------------------------------------------- d.16.b.T.maritima.GEN.fasta -------------------------------------------------- n.16.b.T.thermophilus.2.num.fa -------------------------------------------------- s.16.b.T.thermophilus.2.schem. -------------------------------------------------- d.16.b.T.thermophilus.2.fasta -------------------------------------------------- s.16.b.T.thermophilus.1.schem. -------------------------------------------------- n.16.b.T.thermophilus.1.num.fa -------------------------------------------------- d.16.b.T.thermophilus.1.fasta -------------------------------------------------- d.16.b.T.aquaticus.fasta -------------------------------------------------- d.16.b.T.roseum.fasta -------------------------------------------------- d.16.b.P.marina.fasta -------------------------------------------------- d.16.b.P.staleyi.fasta -------------------------------------------------- d.16.b.P.Schlesner.fasta -------------------------------------------------- d.16.b.G.obscuriglobus.1.fasta -------------------------------------------------- d.16.b.I.pallida.fasta -------------------------------------------------- d.16.a.P.abyssi.fasta -------------------------------------------------- d.16.a.P.horikoshii.fasta -------------------------------------------------- d.16.a.P.furiosus.fasta -------------------------------------------------- d.16.a.T.celer.fasta -------------------------------------------------- d.16.a.A.fulgidus.fasta -------------------------------------------------- d.16.a.N.equitans.fasta -------------------------------------------------- d.16.a.A.pernix.K1.fasta -------------------------------------------------- d.16.a.P.occultum.fasta -------------------------------------------------- d.16.a.T.tenax.fasta -------------------------------------------------- d.16.a.S.acidocaldarius.fasta -------------------------------------------------- d.16.a.S.solfataricus.fasta -------------------------------------------------- d.16.a.S.solfataricus.2.fasta -------------------------------------------------- d.16.a.M.thermautotrophicus.1. -------------------------------------------------- d.16.a.M.thermautotrophicus.2. -------------------------------------------------- d.16.a.M.formicicum.fasta -------------------------------------------------- d.16.a.M.vannielii.fasta -------------------------------------------------- d.16.a.H.marismortui.rrnA.fast -------------------------------------------------- d.16.a.H.marismortui.rrnB.fast -------------------------------------------------- d.16.a.Halobacterium.sp.fasta -------------------------------------------------- d.16.a.N.bangense.fasta -------------------------------------------------- d.16.a.N.innermongoliae.fasta -------------------------------------------------- d.16.a.H.volcanii.fasta -------------------------------------------------- d.16.a.M.hungatei.fasta -------------------------------------------------- d.16.a.P.torridus.fasta -------------------------------------------------- d.16.a.T.acidophilum.fasta -------------------------------------------------- a.16.e.G.ardeae.fasta GGUUGAUCCUGCCGGAG--CGCGAC--GCUCGCCCCAAGGACACAAGCCA d.16.e.G.intestinalis.fasta GGUCGAUCCUGCCGGAG--CGCGAC--GCUCUCCCCAAGGACG-AAGCCA a.16.e.G.muris.fasta GGUUGAUCCUGCCGGAG--UACUAC--GCU-ACCCCAAGGACAAAAGCCA d.16.e.A.bracteata.fasta GGUUGAUUCUGCCUGAC--ACACAC--GCUCGUCCCAAAGAUU-AAGCCA d.16.e.Glomus.sp.W3349.fasta NNNNNNNNNNNNNNCCAGUAGUCAUAUGCUUGUCUCAAAGAUU-AAGCCA d.16.e.S.cerradensis.fasta NNNNNNNNNNNNNNNNNGUAGUCAUAUGAUUGUCUCAAAGAUU-AAGCCA a.16.e.G.intraradices.fasta NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NAGCCA d.16.e.S.culisetae.fasta NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAGAUU-AAGCCA a.16.e.P.balamuthi.fasta GACGUGGUAGGGGAGGACGCUGAAUGGGGCUGGUAGAAACAAC-UGGGGG d.16.e.A.flavus.fasta NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGAUU-AAGCCA d.16.e.T.caries.fasta NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNCA d.16.e.M.circinelloides.fasta NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAGAUU-AAGCCA d.16.e.M.racemosus.fasta CCUGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUU-AAGCCA d.16.e.R.oryzae.fasta NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAGAUU-AAGCCA a.16.e.M.edulis.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA a.16.e.P.magellanicus.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA b.16.e.E.granulosus.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.D.melanogaster.fasta GGUUGAUCCUGCCAGUA-GUUAUAU--GCUUGUCUCAAAGAUU-AAGCCA b.16.e.C.koreana.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA b.16.e.A.australis.fasta GGUGGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA b.16.e.O.utahensis.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA b.16.e.A.salina.fasta GGUUGAUCCUGCCAGUA-G-CAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.M.musculus.fasta GGUUGAUCCUGCCAGUA-G-CAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.R.norvegicus.fasta GGUUGAUCCUGCCAGUA-G-CAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.H.sapiens.fasta GGUUGAUCCUGCCAGUA-G-CAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.O.cuniculus.fasta GGUUGAUCCUGCCAGUA-G-CAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.X.borealis.fasta GGUUGAUCCUGCCAGUA-G-CAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.X.laevis.fasta GGUUGAUCCUGCCAGUA-G-CAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.A.castellanii.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.B.mandrillaris.fasta NNNNNNNNNNNNNNNNN-NUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.P.falciparum.A.fasta GGUUGAUCUUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.P.falciparum.S.fasta GGUUGAUCUUGCCAGUA-GUCAUAU--GCUUGUCUCACAGAUU-AAGCCA d.16.e.P.vivax.A.fasta GGUUGAUCUUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.P.vivax.O.fasta GGUUGAUCUUGCCAGUA-GUCAUAUACGCUUGUCUCAAAGAUU-AAGUCA d.16.e.P.vivax.S.fasta GGUUGAUCUUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.E.histolytica.fasta GGUUGAUCCUGCCAGUA--UUAUAU--GCUGAUGUUAAAGAUU-AAGCCA d.16.e.I.hoferi.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.Dermocystidium.sp.fasta GGUUG-UCCUGCCAGUAAGUCAUAU--GCUUGUCUCCAAGAUU-AAGCCA d.16.e.S.destruens.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.A.unguiculata.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.D.grandis.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.A.macrogynus.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUAAAAGAUU-AAGCCA d.16.e.B.emersonii.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUAAAAGAUU-AAGCCA d.16.e.C.albicans.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.S.cerevisiae.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.N.crassa.fasta GGUUGAUUCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.P.anserina.fasta GGUUGAUUCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.C.immitis.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.L.major.fasta GGUUGAUUCUGCCAGUA-GUCAUAU--GCUUGUUUCAAGGACU-UAGCCA d.16.e.T.cruzi.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUUUCAAGGACU-UAGCCA d.16.e.T.brucei.fasta GGUUGAUUCUGCCAGUA-GUCAUAU--GCUUGUUUCAAGGACU-UAGCCA d.16.e.P.carinii.fasta GGU-GAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.C.neoformans.fasta GGUUGAUUCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.Fungus.sp.QPX.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.U.maydis.fasta GGUUGAUUCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.M.leidyi.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.T.cystophora.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.M.prolifera.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGACU-AAGCCA d.16.e.P.haeckeli.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.E.rotunda.fasta GGUUGAUCCUGCCAGUA-A-CAUAU--GCUUGUCUCAAAGACU-AAGCCA d.16.e.P.chromatophora.fasta GGUUGAUCCGGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.A.majus.fasta NNNNNNNNNNNNNNNNN-NUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.S.indicum.fasta NNNNNNNNNNNNNNNUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.D.grandiflora.fasta NNNNNNNNNNNNNNNUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.Pla.lanceolata.fasta NNNNNNNNNNNNNNNNA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.N.tabacum.fasta NNNNNNNNNNNNNNNNN-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.A.thaliana.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.S.alba.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.S.tuberosum.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.F.x.ananassa.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.G.max.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.O.sativa.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.Z.mays.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.A.verticilliflorum.fast NNNNGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.G.spirotaenia.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.Staurastrum.sp.M752.fas GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.C.paradoxa.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.G.nostochinearum.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.G.wittrockiana.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AACCCA d.16.e.C.luteoviridis.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUCGUCUCAAAGAUU-AAGCCA d.16.e.O.longa.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGACU-AAGCCA d.16.e.P.weissei.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGACU-AAGCCA d.16.e.C.citrina.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGACU-AAGCCA d.16.e.G.steinii.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGACU-AAGCCA d.16.e.Ple.lanceolata.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGACU-AAGCCA d.16.e.O.quadricornutus.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGACU-AAGCCA d.16.e.S.lemnae.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGACU-AAGCCA d.16.e.S.mytilus.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGACU-AAGCCA d.16.e.E.mobilis.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGACU-AAGCCA d.16.e.O.granulifera.1.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGACU-AAGCCA d.16.e.O.granulifera.2.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGACU-AAGCCA d.16.e.U.gallina.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGACU-AAGCCA d.16.e.U.pisces.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGACU-AAGCCA d.16.e.P.lepisma.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGACU-AAGCCA d.16.e.U.grandis.fasta GGUUGAUCCUGCCAGUA-GUCAUAC--GCUUGUCUCAAAGACU-AAGCCA d.16.e.B.coli.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGACU-AAGCCA d.16.e.E.aediculatus.fasta GGUUGAUCCUGCCAGUA-GUCAUAC--GCUUGUCUCAAGGAUU-AAGCCA d.16.e.T.thermophila.fasta GGUUGAUCCUGCCAGUU-A-CAUAU--GCUUGUCUUAAAUAUU-AACCCA d.16.e.Bangia.sp.NWT.fasta GAUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGACU-AAGCCA d.16.e.Bangia.sp.VIS7.fasta GAUUGAUCCUGCCAGUA-GUCAUAC--GCUCGUCUCAAAGAUU-AAGCCA d.16.e.E.carnea.fasta UGGUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.R.parvula.fasta NNNNNNNNNNNNNNNNN-NNNNNNN--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.C.coeruleus.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.P.aerugineum.1.fasta GGUUGAUCCUGCCAGUU-AUGAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.R.maculata.fasta NNNGGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.A.ambigua.fasta GGUUGAUCCUGCCAGUA-GUGAUAC--GCUGUCAUUAAG-ACU-AAGCCA d.16.e.A.baicalensis.fasta GGUUGAUCCUGCCAGUA-GUGAUAC--GCUGUCAUUAAGGACU-AAGCCA d.16.e.S.nipponica.fasta GGUUGAUCCUGCCAGUA-GUGAUAC--GCUCGCAUUUAAGAUU-AAGCCA d.16.e.C.radiatus.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.C.criophilum.fasta GGUUGAUCCUGCCAGUA-GUCAUAC--GCUCGYCUCAAAGAUU-AAGCCA d.16.e.A.capitellata.fasta GGUUGAUCCUGCCAGUA-GUCAUAC--GCUCGUCUCAAAGACU-AAGCCA d.16.e.S.pupula.fasta GGUUGAUCCUGCCAGUA-GUCAUAC--GCUCGUCUCAAAGAUU-AAGCCA d.16.e.T.antarctica.fasta GGUUGAUCCUGCCAGUA-GUCAUAC--GCUCGUCUCAAAGAUU-AAGCCA d.16.e.E.triangulatum.fasta GGUUGAUCCUGCCAGUA-GUCAUAC--GCUCGUCUCAAAGAUU-AAGCCA d.16.e.A.bongranii.fasta GGUUGAUCCUGCCAGUA-GUCAUAC--GCUCGUCUCAAAGAUU-AAGCCA d.16.e.Pseudogomphonema.sp.fas GGUUGAUCCUGCCAGUA-GUCAUAC--GCUCGUCUCAAAGAUU-AAGCCA d.16.e.D.tenue.fasta GGUUGAUCCUGCCAGUA-GUCAUAC--GCUCGUCUCAAAGAUU-AAGCCA d.16.e.G.marina.fasta GGUUGAUCCUGCCAGUA-GUCAUAC--GCUCGUCUCAAAGAUU-AAGCCA d.16.e.Thalassionema.sp.fasta GGUUGAUCCUGCCAGUA-GUCAUAC--GCUCGUCUCAAAGAUU-AAGCCA d.16.e.R.belgicae.fasta GGUUGAUCCUGCCAGUA-GUCAUAC--GCUCGUCUCAAAGAUU-AAGCCA d.16.e.Undatella.sp.fasta GGUUGAUCCUGCCAGUA-GUCAUAC--GCGCGUCUCAAAGAUU-AAGCCA d.16.e.C.belgica.fasta GGUUGAUCCUGCCAGUA-GUCAUAC--GCUCGUCUCAAAGAUU-AAGCCA d.16.e.O.sinensis.fasta GGUUGAUCCUGCCAGUA-GUCAUAC--GCUCGUCUCAAAGAUU-AAGCCA d.16.e.D.brightwellii.fasta GGUUGAUCCUGCCAGUA-GUCAUAC--GCUCGUCUCAAAGAUU-AAGCCA d.16.e.L.undulatum.fasta GGUUGAUCCUGCCAGUA-GUCAUAC--GCUCGUCUCAAAGAUU-AAGCCA d.16.e.T.eccentrica.fasta GGUUGAUCCUGCCAGUA-GUCAUAC--GCUCGUCUCAAAGAUU-AAGCCA d.16.e.T.pseudonana.fasta GGUUGAUCCUGCCAGUA-GUCAUAC--GCUCGUCUCAAAGAUU-AAGCCA d.16.e.S.costatum.fasta GGUUGAUCCUGCCAGUA-GUCAUAC--GCUCGUCUCAAAGAUU-AAGCCA d.16.e.P.laevis.fasta GGUUGAUCCUGCCAGUA-GUCAUAC--GCUCGUCUCAAAGAUU-AAGCCA d.16.e.L.borealis.fasta GGUUGAUCCUGCCAGUA-GUCAUAC--GCUCGUCUCAAAGAUU-AAGCCA d.16.e.P.pseudodenticulata.fas GGUUGAUCCUGCCAGUA-GUCAUAC--GCUCGUCUCAAAGAUU-AAGCCA d.16.e.B.mediterranea.fasta GGUUGAUCCUGCCAGUA-GUCAUAC--GCUCGUCUCAAAGAUU-AAGCCA d.16.e.B.pacifica.fasta GGUUGAUCCUGCCAGUA-GUCAUAC--GCUCGUCUCAAAGAUU-AAGCCA d.16.e.L.minuta.fasta GGUUGAUCCUGCCAGUA-GUCAUAC--GCUCGUCUCAAAGAUU-AAGCCA d.16.e.L.danicus.fasta GGUUGAUCCUGCCAGUA-AUCAUAC--GCUCGUCUCAAAGAUU-AAGCCA d.16.e.Chaetoceros.sp.fasta GGUUGAUCCUGCCAGUA-GUCAUAC--GCUCGUCUCAAAGAUU-AAGCCA d.16.e.A.invadans.fasta NNNNNNNNNNNNNNNNN-NNNNNNN--NNNNGUCUCAAAGAUU-AAGCCA d.16.e.L.giganteum.fasta GGUUGAUCCUGCCAGUA-GUCAUAC--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.M.varians.fasta GGUUGAUCCUGCCAGUA-GCGAUAC--GCUCGUAUUAAAGAUU-AAGCCA d.16.e.B.hominis.fasta GGUUGAUCCUGCCAGUA-GUCAUAC--GCUCGUCUCAAAGAUU-AAGCCA d.16.e.P.marinus.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.T.gondii.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUUAAAGAUU-AAGCCA d.16.e.A.fundyense.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.B.bigemina.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUUAAAGAUU-AAGCCA d.16.e.B.canis.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.Babesia.sp.OKD.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.B.microti.1.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUUAAAGAUU-AAGCCA d.16.e.B.microti.2.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUUAAAGAUU-AAGCCA d.16.e.B.microti.3.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUUAAAGAUU-AAGCCA d.16.e.B.microti.4.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUUAAAGAUU-AAGCCA d.16.e.B.microti.5.fasta NNNNNNNNCUGCCAGUA-GUCAUAU--GCUUGUCUUAAAGAUU-AAGCCA d.16.e.B.rodhaini.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUUAAAGAUU-AAGCCA d.16.e.B.gibsoni.fasta NNNNNNNNNNNNCAGUA-GUCAUAU--GCUUGUCUUAAAGAUU-AAGCCA d.16.e.B.bovis.fasta NNNNNNNNNNNNNNNUA-GUCAUAU--GCUUGUCUUAAAGACU-AAGCCA d.16.e.J.libera.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUUUCAAAGAUU-AAGCCA d.16.e.R.americana.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAGGAUU-AAGCCA d.16.e.B.ostreae.fasta GGUUGAUCCUGCCAGUA-GUCAUAU--GCUUGUCUCAAAGAUU-AAGCCA d.16.e.A.dasyae.fasta GGUUGAUCCUGCCAGUG-GU-AUAU--GCUUGUCUCAAGGACU-AAGCCA d.16.e.A.hermannii.fasta GGUUGAUCCUGCCAGUG-GU-AUAU--GCUUGUCUCAAGGACU-AAGCCA d.16.e.N.helminthoides.fasta GGUUGAUCCUGCCAGUG-GU-AUAU--GCUUGUCUCAAGGACU-AAGCCA d.16.e.B.gelatinosum.fasta GGUUGAUCCUGCCAGUG-GU-AUAU--GCUUGUCUCAAGGACU-AAGCCA d.16.e.N.tortuosa.fasta GGUUGAUCCUGCCAGUA-GUGAUAU--GCUUGUCUCAAGGACU-AAGCCA d.16.e.T.hispida.fasta NNNNNNNNNNNNNNNNN-NU-AUAU--GCUUGUCUCAAGGACU-AAGCCA d.16.e.T.violacea.4.fasta NNNNNNNNNNNNNNNNN-NU-AUAU--GCUUGUCUCAAGGACU-AAGCCA d.16.e.T.violacea.1.fasta GGUUGAUCCUGCCAGUG-GU-AUAU--GCUUGUCUCAAGGACU-AAGCCA d.16.e.T.violacea.2.fasta NNNNNNNNNNNNNNNNN-NU-AUAU--GCUUGUCUCAAGGACU-AAGCCA d.16.e.N.shawii.fasta NNNNNNNNNNNNNNNNN-NU-AUAU--GCUUGUCUCAAGGACU-AAGCCA d.16.e.B.investiens.fasta NNNNNNNNNNNNNNNNN-NU-AUAU--GCUUGUCUAAAGGACU-AAGCCA d.16.e.B.macrosporum.fasta GGUUGAUCCUGCCAGUG-GU-AUAU--GCUUGUCUCAAGGACU-AAGCCA d.16.e.A.plicata.fasta GGUUGAUCCUGCCAGUG-GU-AUAU--GCUCGUCUCAAGGACU-AAGCCA d.16.e.C.officinalis.fasta GGUUGAUCCUGCCAGUG-GU-AUAU--GCUUGUCUCAAAGACU-AAGCCA d.16.e.R.carriebowensis.fasta GGUUGAUCCUGCCAGUG-GU-AUAU--GCUUGUCUCAAGGACU-AAGCCA d.16.e.B.hamifera.fasta GGUUGAUCCUGCCAGUG-GU-AUAU--GCUUGUCUCAAGGACU-AAGCCA d.16.e.G.vagum.fasta GGUUGAUCCUGCCAGUG-GU-AUAU--GCUUGUCUCAAGGACU-AAGCCA d.16.e.C.crispus.fasta GGUUGAUCCUGCCAGUG-GU-AUAU--GCUUGUCUCAAGGACU-AAGCCA d.16.e.H.plana.fasta GGUUGAUCCUGCCAGUG-GU-AUAU--GCUUGUCUCAAGGACU-AAGCCA d.16.e.R.leptophylla.fasta GGUUGAUCCUGCCAGUG-GU-AUAU--GCUUGUCUCAAGGACU-AAGCCA d.16.e.P.pulvinata.fasta GGUUGAUCCUGCCAGUG-GU-AUAU--GCUUGUCUCAAGGACU-AAGCCA d.16.e.C.rubrum.fasta GGUUGAUCCUGCCAGUG-GU-AUAU--GCUUGUCUCAAGGACU-AAGCCA d.16.e.Gracilariopsis.sp.fasta GGUUGAUCCUGCCAGUG-GU-AUAU--GCUUGUCUAUAGGACU-AAGCCA d.16.e.B.moritziana.fasta GGUUGAUCCUGCCAGUG-GU-AUAU--GCUUGUCUCAAAGACU-AAGCCC d.16.e.H.rubra.fasta GGUUGAUCCUGCCAGUG-GU-AUAG--UCUUGUCUCAAGGACU-AAGCCA d.16.e.D.grisea.fasta GGUUGAUCCUGCCAGUG-GU-AUAG--UCUUGUCUCAAAGGUU-AAGCCA d.16.e.N.fowleri.fasta NNNNNNNNNNNNNNNUA--CUAUAU--GCUUGUCUCAAAGCCU-AAGCCA d.16.e.N.gruberi.fasta GGUUGAUCCUGCCAGUA--CUAUAU--GCUUGUCUCAAAGCCU-AAGCCA a.16.e.Hexamita.sp.fasta GGUUGAACCUGCCAGAAGGGCAAGC----UAAGAUUAAGGAUU-AAGCCA d.16.e.T.foetus.fasta GGUUGAUCCUGCCAAGGAAGCACAC----UUCGGUCAUAGAUU-AAGCCA d.16.e.A.khaliulini.fasta GGUUGAUUCUGCCUGAC--GUGGA--CGCUUGCCUCGAAGAUU-AAGCCA d.16.e.E.aedis.fasta GGUUGAUUCUGCCUGAC--GUGGA--CGCUUGCCUCGAAGAUU-AAGCCA d.16.e.A.connecticus.fasta GGUUGAUUCUGCCUGAC--GUGGA--CGCUAGCCUUGAAGAUU-AAGCCA d.16.e.I.barri.fasta GGUUGAUUCUGCCUGAC--GUGGA--CGCUUGCCUCGAAGAUU-AAGCCA d.16.e.A.ferocious.fasta GGUUGAUUCUGCCUGAC--GUGGA--CGCUUGCCUUGAAGAUU-AAGCCA d.16.e.Amblyospora.sp.fasta GGUUGAUUCUGCCUGAC--GUGGA--CGCUAGCCUCGGGGAUU-AAGCCA d.16.e.C.lunata.fasta GGUUGAUUCUGCCUGAC--GUGGA--CACUUGCCUUGAAGAGU-AAGCCA d.16.e.P.anophelis.fasta GGUUGAUUCUGCCUGAC--GUGGA--UGCUCGCCUUAAAGACU-AAGCCA d.16.e.Hazardia.sp.fasta GGUUGAUUCUGCCUGAC--GUGGA--CGCUUGCCUCAAGGAUU-AAGCCA d.16.e.H.milleri.fasta GGUUGAUUCUGCCUGAC--GUGGA--CGCUAGCCUUAAGGAUU-AAGCCA d.16.e.P.simulii.fasta GGUUGAUUCUGCCUGAC--GUGGA--CGCUUGUUUUAAGGAUU-UAGCCA d.16.e.W.palustris.fasta GGUUGAUUCUGCCUGAC--GUGGA--CGCUUGUUUUAAGGAUU-UAGCCA d.16.e.Nosema.sp.03.fasta GGUUGAUUCUGCCUGAC--GUAGA--CGCUAUACUCUAAGAUU-AACCCA d.16.e.Nosema.sp.05.fasta GGUUGAUUCUGCCUGAC--GUAGA--CGCUAUACUCUAAGAUU-AACCCA d.16.e.Endoreticulatus.sp.fast GGUUGAUUCUGCCUGAC--GUAGA--CGCUAUACUCUAAGAUU-AACCCA d.16.e.Nosema.sp.02.fasta GGUUGAUUCUGCCUGAC--GUAGA--CGCUAUACUCUAAGAUU-AACCCA d.16.e.N.spodopterae.fasta GGUUGAUUCUGCCUGAC--GUAGA--CGCUAUACUCUAAGAUU-AACCCA d.16.e.N.trichoplusiae.fasta GGUUGAUUCUGCCUGAC--GUAGA--CGCUAUACUCUAAGAUU-AACCCA d.16.e.N.bombycis.27.fasta GGUUGAUUCUGCCUGAC--GUAGA--CGCUAUACUCUAAGAUU-AACCCA d.16.e.N.bombycis.02.fasta GGUUGAUUCUGCCUGAC--GUAGA--CGCUAUACUCUAAGAUU-AACCCA d.16.e.V.imperfecta.fasta GGUUGAUUCUGCCUGAC--GUAGA--CGCUAUACUCUAAGAUU-AACCCA d.16.e.N.furnacalis.fasta GGUUGAUUCUGCCUGAC--GUAGA--CGCUAUACUCUAAGAUU-AACCCA d.16.e.Microsporidium57864.fas GGUUGAUUCUGCCUGAC--GUAGA--CGCUAUUCCCUAAGAUU-AACCCA d.16.e.Vairimorpha.sp.C21.fast GGUUGAUUCUGCCUGAC--GUAGA--CGCUAUUCCCUAAGAUU-AACCCA d.16.e.N.oulemae.fasta GGUUGAUUCUGCCUGAC--GUAGA--CGCUAUUCCCUAAUAUU-AACCCA d.16.e.N.necatrix.fasta GGUUGAUUCUGCCUGAC--GUAGA--CGCUAUUCCCUAAGAUU-AACCCA d.16.e.V.necatrix.fasta GGUUGAUUCUGCCUGAC--GUAGA--CGCUAUUCCCUAAGAUU-AACCCA d.16.e.N.apis.fasta GGUUGAUUCUGCCUGAC--GUAGA--CGCUAUUCCCUAAGAUU-AACCCA d.16.e.O.occidentalis.fasta GGUUGAUUCUGCCUGAC--GUAGA--CGCUAUUCCCUAAGAUU-AACCCA d.16.e.Microsporidium.sp.DP119 GGUUGAUUCUGCCUGGU--GUAGA--UGCUAGUUUCUAAGAUU-UAGCCA d.16.e.V.corneae.fasta GGUUGAUUCUGCCUGAC--GUAGA--UGCUAGUCUCUAAGAUU-AAGCCA d.16.e.A.michaelis.fasta GGUUGAUUCUGCCUGAC--GUAGAA-CGCUAGUCUCACAGAUU-CAGCCA d.16.e.T.contejeani.fasta GGUUGAUUCUGCCUGAC--GUGGA--AGCUAUUCUUUAAGAUU-AAGCCA d.16.e.E.hellem.fasta GGUUGAUUCUGCCUGAC--GUGGA--UGCUAUUCUCUGGGGCU-AAGCCA d.16.e.Encephalitozoon.sp.fast GGUUGAUUCUGCCUGAC--GUGGA--UGCUGUUCUCUGGGACU-AAGCCA d.16.e.E.cuniculi.fasta GGUUGAUUCUGCCUGAC--G--GA--UGCUAUUCUCUGGGGCU-AAGCCA d.16.e.O.colligata.fasta GGUUGAUUCUGCCUGAC--GUGGA--UGCUAGUGUCUGAGAUU-AAGCCA d.16.e.E.salmonis.fasta GGUUGAUUCUGCCUGAC--GUGGG--UGCUAGCCUCUAAGAUU-UAGCCA d.16.e.N.salmonis.fasta GGUUGAUUCUGCCUGAC--GUGGG--UGCUAGCCUCUAAGAUU-UAGCCA d.16.e.Enterocytozoonidae.sp.f NNNNNNNNNNNNNUGAC--GUGGG--UGCUAGCCUCUAAGAUU-UAGCCA d.16.e.E.bieneusi.fasta GGUUGAUUCUGCCUGAC--GUAGA--UGCUAGUCUCUGAGAUU-AAGCCA d.16.e.B.algerae.fasta GGUUGAUUCUGCCUGAU--AUGUG--UGCUAGCGUCAAAGAUU-UAGCCA d.16.e.T.solenopsae.fasta GGUUGAUUCUGCCUGGU--AUGUG--UGCUAGCGUCAAGGAUU-UAGCCA d.16.e.V.acridophagus.fasta GGUUGAUUCUGCCUGUU--AUAUG--UACUAGUGUCGAAGAUU-UAGCCA d.16.e.Bacillidium.sp.fasta GGUUGAUUCUGCCUGAC--GUAUG--UGCUUGUCUUGA-GAUU-UAGCCA d.16.e.P.cristatellae.fasta GGUUGAUUCUGCCUGAC--GUAUG--CGCUUGUCUUGAAGAUU-UAGCCA d.16.e.Pleistophora.sp.fasta GGUUGAUUCUGCCUGAC--GUAGA--CGCUAGUCUCUGAGAUU-AAGCCA d.16.e.O.operophterae.fasta GGUUGAUUCUGCCUGAC--GUAGA--UGCUAGCCUCCGAGGCU-AAGCCA d.16.e.F.magnivora.fasta GGUUGAUUCUGCCUGAC--GAGGA--UGCUUGUCUCUGGGAUU-AAGCCA d.16.e.G.atherinae.fasta GGUUGAUUCUGCCUGAC--GUGGA--UGCUAGUCUCAUAGGUU-AAGCCA d.16.e.Ichthyosporidium.sp.fas GGUUGAUUCUGCCUGAC--GUGGA--UGCUAGUCUCUAAAGUU-AAGCCA d.16.e.L.acerinae.fasta GGUUGAUUCUGCCUGGU--GUGGA--UGCUAGUCUCAUAGGUU-AAGCCA d.16.e.H.anguillarum.fasta GGUUGAUUCUGCCUGAC--GUGGA--CGCUAGUCUCAUAGGUU-AAGCCA d.16.e.P.mirandellae.fasta GGUUGAUUCUGCCUGGC--GUGGA--UGCUAGUCUCAUAGGUU-AAGCCA d.16.e.T.hominis.fasta GGUUGAUUCUGCCUGAC--GUGGA--UGCUAGUCUCAUAGGUU-AAGCCA d.16.e.V.culicis.fasta GGUUGAUUCUGCCUGAC--GUGGA--UGCUAGUCUCAUAGGUU-AAGCCA d.16.e.P.hippoglossoideos.fast GGUUGAUUCUGCCUGAC--GUGGA--UGCUAGUUUCAUAGGUU-AAGCCA d.16.e.Microgemma.sp.fasta GGUUGAUUCUGCCUG----GUGGA--UGCUAGUCUCAUAGAUU-UAGCCA d.16.e.S.lophii.fasta GGUUGAUUCUGCCUGAC--GUGGA--UGCUAGUCUCAUAGAUU-UAGCCA d.16.e.Pleistophora.sp.LS.fast GGUUGAUUCUGCCUGAC--GUAGA--CGCUAGUUUCACAGAUU-GAUCCA d.16.e.D.gammarellum.fasta NNUUGAUUCUGCCUGAC--GUGGA--CGCUAGUCUCACAGAUU-UAGCCA d.16.e.M.prosopium.fasta NNNNNNNNNNNNNUGAC--GUGGA--UGCUAGUUUCAUAGACU-AAGCCA d.16.e.A.scoticae.fasta GGUUGAUUCUGCCUGAC----GUGUGUGCUAGUCUUGGGGACU-UAGCCA d.16.e.P.whitei.fasta NNNNNNNNNNNNNUGAC----GUGUGCGCUAGUCUUGGGGACU-UAGCCA a.16.c.C.coccineum.fasta -------------------------------------------------- a.16.c.C.ruber.fasta -------------------------------------------------- d.16.c.N.tabacum.fasta -------------------------------------------------- d.16.c.S.oleracea.fasta -------------------------------------------------- d.16.c.Z.mays.fasta -------------------------------------------------- d.16.c.M.polymorpha.fasta -------------------------------------------------- d.16.c.R.communis.fasta -------------------------------------------------- d.16.c.C.vulgaris.fasta -------------------------------------------------- d.16.c.P.wickerhamii.fasta -------------------------------------------------- d.16.c.P.minor.fasta -------------------------------------------------- d.16.c.N.olivacea.fasta -------------------------------------------------- d.16.c.P.parkeae.fasta -------------------------------------------------- d.16.c.C.reinhardtii.fasta -------------------------------------------------- b.16.m.A.castellanii.fasta -------------------------------------------------- d.16.c.P.thurberi.fasta -------------------------------------------------- b.16.m.C.crispus.fasta -------------------------------------------------- d.16.c.T.gondii.fasta -------------------------------------------------- b.16.m.N.crassa.fasta -------------------------------------------------- b.16.m.P.anserina.fasta -------------------------------------------------- b.16.m.P.chrysogenum.fasta -------------------------------------------------- b.16.m.E.nidulans.fasta -------------------------------------------------- b.16.m.S.cerevisiae.fasta -------------------------------------------------- b.16.m.W.saturnus.m.fasta -------------------------------------------------- b.16.m.P.minor.fasta -------------------------------------------------- d.16.c.P.falciparum.fasta -------------------------------------------------- d.16.c.B.bovis.fasta -------------------------------------------------- b.16.m.T.pyriformis.fasta -------------------------------------------------- d.16.m.S.sinuspaulianus.fasta -------------------------------------------------- b.16.m.P.tetraurelia.fasta -------------------------------------------------- b.16.m.D.discoideum.fasta -------------------------------------------------- d.16.m.P.polycephalum.fasta -------------------------------------------------- b.16.m.P.littoralis.fasta -------------------------------------------------- b.16.m.P.wickerhamii.fasta -------------------------------------------------- d.16.c.H.africana.fasta -------------------------------------------------- d.16.c.C.fragile.fasta -------------------------------------------------- d.16.c.C.sertularioides.fasta -------------------------------------------------- d.16.c.C.humicola.fasta -------------------------------------------------- d.16.c.P.uvella.fasta -------------------------------------------------- a.16.c.G.nostochinearum.fasta -------------------------------------------------- a.16.c.G.wittrockiana.fasta -------------------------------------------------- d.16.c.C.paradoxa.fasta -------------------------------------------------- d.16.y.C.paradoxa.fasta -------------------------------------------------- d.16.c.Cryptomonas.sp.fasta -------------------------------------------------- d.16.c.P.palmata.fasta -------------------------------------------------- d.16.c.H.akashiwo.fasta -------------------------------------------------- d.16.c.S.pseudocostatum.fasta -------------------------------------------------- d.16.c.P.littoralis.fasta -------------------------------------------------- d.16.c.C.caldarium.fasta -------------------------------------------------- a.16.c.E.huxleyi.fasta -------------------------------------------------- d.16.c.E.gracilis.fasta -------------------------------------------------- d.16.b.Anabaena.sp.fasta -------------------------------------------------- d.16.b.Chlorogloeopsis.PCC7518 -------------------------------------------------- d.16.b.Synechococcus.sp.fasta -------------------------------------------------- d.16.b.Synechocystis.PCC6803.G -------------------------------------------------- d.16.b.O.agardhii.fasta -------------------------------------------------- d.16.b.Pleurocapsa.7516.fasta -------------------------------------------------- d.16.b.M.aeruginosa.fasta -------------------------------------------------- b.16.m.C.reinhardtii.fasta -------------------------------------------------- d.16.m.C.eugametos.fasta -------------------------------------------------- b.16.m.M.senile.fasta -------------------------------------------------- d.16.b.S.pneumoniae.fasta -------------------------------------------------- d.16.b.S.pyogenes.fasta -------------------------------------------------- d.16.b.B.anthracis.fasta -------------------------------------------------- d.16.b.B.cereus.1.fasta -------------------------------------------------- d.16.b.E.faecalis.fasta -------------------------------------------------- d.16.b.E.faecium2.fasta -------------------------------------------------- d.16.b.L.monocytogenes.fasta -------------------------------------------------- d.16.b.B.subtilis.fasta -------------------------------------------------- d.16.b.B.subtilis.GEN.fasta -------------------------------------------------- d.16.b.B.halodurans.fasta -------------------------------------------------- d.16.b.S.aureus.fasta -------------------------------------------------- d.16.b.S.aureus.GEN.fasta -------------------------------------------------- d.16.b.L.lactis.GEN.fasta -------------------------------------------------- d.16.b.S.pyogenes.GEN.fasta -------------------------------------------------- d.16.b.L.acidophilus.fasta -------------------------------------------------- d.16.b.M.capricolum.fasta -------------------------------------------------- d.16.b.M.mycoides.fasta -------------------------------------------------- d.16.b.E.rhusiopathiae.fasta -------------------------------------------------- d.16.b.C.innocuum.fasta -------------------------------------------------- d.16.b.M.genitalium.fasta -------------------------------------------------- d.16.b.M.pneumoniae.GEN.fasta -------------------------------------------------- d.16.b.M.pneumoniae.fasta -------------------------------------------------- d.16.b.M.gallisepticum.fasta -------------------------------------------------- d.16.b.U.urealyticum.fasta -------------------------------------------------- d.16.b.U.urealyticum.GEN.fasta -------------------------------------------------- d.16.b.M.hyopneumoniae.fasta -------------------------------------------------- d.16.b.F.necrophorum.fasta -------------------------------------------------- d.16.b.F.nucleatum.fasta -------------------------------------------------- d.16.b.S.moniliformis.fasta -------------------------------------------------- d.16.b.C.botulinum.F.fasta -------------------------------------------------- d.16.b.C.tetani.fasta -------------------------------------------------- d.16.b.C.perfringens.fasta -------------------------------------------------- d.16.b.C.difficile.fasta -------------------------------------------------- d.16.b.E.brachy.fasta -------------------------------------------------- d.16.b.Epulopiscium.sp.fasta -------------------------------------------------- d.16.b.H.chlorum.fasta -------------------------------------------------- b.16.m.G.max.fasta -------------------------------------------------- b.16.m.O.berteriana.fasta -------------------------------------------------- b.16.m.S.cereale.fasta -------------------------------------------------- b.16.m.T.aestivum.fasta -------------------------------------------------- d.16.m.Z.mays.fasta -------------------------------------------------- b.16.m.M.polymorpha.fasta -------------------------------------------------- b.16.m.N.olivacea.fasta -------------------------------------------------- d.16.b.G.liquefaciens.fasta -------------------------------------------------- d.16.b.B.japonicum.fasta -------------------------------------------------- d.16.b.R.acidophilus.fasta -------------------------------------------------- d.16.b.A.caulinodans.fasta -------------------------------------------------- d.16.b.B.quintana.fasta -------------------------------------------------- d.16.b.M.loti.fasta -------------------------------------------------- d.16.b.A.tumefaciens.fasta -------------------------------------------------- d.16.b.B.bacilliformis.fasta -------------------------------------------------- d.16.b.B.henselae.fasta -------------------------------------------------- d.16.b.B.melitensis.fasta -------------------------------------------------- d.16.b.R.orientis.fasta -------------------------------------------------- d.16.b.Methylobacterium.sp.fas -------------------------------------------------- d.16.b.R.bellii.fasta -------------------------------------------------- d.16.b.R.felis.URRWXCal2.fasta -------------------------------------------------- d.16.b.R.prowazekii.fasta -------------------------------------------------- d.16.b.R.prowazekii.GEN.fasta -------------------------------------------------- d.16.b.R.rickettsii.fasta -------------------------------------------------- d.16.b.A.calcoaceticus.fasta -------------------------------------------------- d.16.b.P.pacificensis.fasta -------------------------------------------------- d.16.b.C.marismortui.fasta -------------------------------------------------- d.16.b.H.halodenitrificans.fas -------------------------------------------------- d.16.b.P.aeruginosa.fasta -------------------------------------------------- d.16.b.P.aeruginosa.GEN.fasta -------------------------------------------------- d.16.b.Pseudomonas.sp.fasta -------------------------------------------------- d.16.b.P.putida.fasta -------------------------------------------------- d.16.b.C.burnetii.fasta -------------------------------------------------- d.16.b.M.capsulatus.fasta -------------------------------------------------- d.16.b.L.pneumophila.1.fasta -------------------------------------------------- d.16.b.L.pneumophila.2.fasta -------------------------------------------------- d.16.b.A.vinosum.fasta -------------------------------------------------- d.16.b.Beggiatoa.sp.fasta -------------------------------------------------- d.16.b.A.hydrophila.fasta -------------------------------------------------- d.16.b.S.putrefaciens.fasta -------------------------------------------------- d.16.b.C.freundii.fasta -------------------------------------------------- d.16.b.S.dysenteriae.1.fasta -------------------------------------------------- d.16.b.K.pneumoniae.fasta -------------------------------------------------- d.16.b.P.shigelloides.fasta -------------------------------------------------- d.16.b.Y.pestis.fasta -------------------------------------------------- d.16.b.Y.pseudotuberculosis.fa -------------------------------------------------- d.16.b.S.dysenteriae.2.fasta -------------------------------------------------- d.16.b.E.coli.0157G.GEN.fasta -------------------------------------------------- d.16.b.E.coli.EDL.GEN.fasta -------------------------------------------------- d.16.b.E.coli.fasta -------------------------------------------------- d.16.b.E.coli.K12.GEN.fasta -------------------------------------------------- h.16.b.E.coli.hlxnum.fasta -------------------------------------------------- m.16.b.E.coli.mhg.fasta -------------------------------------------------- s.16.b.E.coli.schem.fasta -------------------------------------------------- d.16.b.S.typhimurium.fasta -------------------------------------------------- d.16.b.S.marcescens.fasta -------------------------------------------------- d.16.b.E.tarda.fasta -------------------------------------------------- d.16.b.P.vulgaris.fasta -------------------------------------------------- d.16.b.V.cholerae4.fasta -------------------------------------------------- d.16.b.V.cholerae5.fasta -------------------------------------------------- d.16.b.V.cholerae2.fasta -------------------------------------------------- d.16.b.V.cholerae6.fasta -------------------------------------------------- d.16.b.V.cholerae.fasta -------------------------------------------------- d.16.b.V.cholerae.GEN.fasta -------------------------------------------------- d.16.b.V.parahaemolyticus.fast -------------------------------------------------- d.16.b.H.influenzae7.fasta -------------------------------------------------- d.16.b.H.influenzae8.fasta -------------------------------------------------- d.16.b.H.influenzae6.fasta -------------------------------------------------- d.16.b.H.influenz.fasta -------------------------------------------------- d.16.b.H.influenzae.fasta -------------------------------------------------- d.16.b.P.multocida.fasta -------------------------------------------------- d.16.b.P.multocida.GEN.fasta -------------------------------------------------- d.16.b.X.albilineans.fasta -------------------------------------------------- d.16.b.X.campestris.fasta -------------------------------------------------- d.16.b.X.fastidiosa.GEN.fasta -------------------------------------------------- d.16.b.D.nodosus.fasta -------------------------------------------------- d.16.b.F.tularensis.fasta -------------------------------------------------- d.16.b.B.parapertussis.fasta -------------------------------------------------- d.16.b.B.pertussis.fasta -------------------------------------------------- d.16.b.B.bronchiseptica2.fasta -------------------------------------------------- d.16.b.u.proteobacterium.fasta -------------------------------------------------- d.16.b.B.mallei.fasta -------------------------------------------------- d.16.b.Burkholderia.sp.fasta -------------------------------------------------- d.16.b.N.meningitidis.MD58.GEN -------------------------------------------------- d.16.b.N.meningitidis.Z2491.GE -------------------------------------------------- d.16.b.N.gonorrhoeae.fasta -------------------------------------------------- d.16.b.C.testosteroni.fasta -------------------------------------------------- d.16.b.D.desulfuricans.fasta -------------------------------------------------- d.16.b.M.xanthus.fasta -------------------------------------------------- d.16.b.D.thermophilus.fasta -------------------------------------------------- d.16.b.B.burgdorferi.fasta -------------------------------------------------- d.16.b.B.burgdorferi.GEN.fasta -------------------------------------------------- d.16.b.B.hermsii.fasta -------------------------------------------------- d.16.b.S.aurantia.fasta -------------------------------------------------- d.16.b.T.pallidum.A.fasta -------------------------------------------------- d.16.b.L.illini.fasta -------------------------------------------------- d.16.b.L.interrogans.fasta -------------------------------------------------- d.16.b.C.trachomatis.GEN.fasta -------------------------------------------------- d.16.b.C.trachomatis.L2.fasta -------------------------------------------------- d.16.b.C.muridarum.fasta -------------------------------------------------- d.16.b.C.pneumoniae.AR39.fasta -------------------------------------------------- d.16.b.C.pneumoniae.fasta -------------------------------------------------- d.16.b.C.pneumoniae.J138.fasta -------------------------------------------------- d.16.b.C.pneumoniae.CWL029.fas -------------------------------------------------- d.16.b.C.psittaci.fasta -------------------------------------------------- d.16.b.D.radiodurans.1.fasta -------------------------------------------------- d.16.b.D.radiodurans.GEN.fasta -------------------------------------------------- d.16.b.B.fragilis.fasta -------------------------------------------------- d.16.b.P.gingivalis.fasta -------------------------------------------------- d.16.b.C.vibrioforme.fasta -------------------------------------------------- d.16.b.C.jejuni.fasta -------------------------------------------------- d.16.b.C.jejuni.GEN.fasta -------------------------------------------------- d.16.b.C.sputorum.fasta -------------------------------------------------- d.16.b.H.pylori.26695.GEN.fast -------------------------------------------------- d.16.b.H.pylori.J99.GEN.fasta -------------------------------------------------- d.16.b.H.pylori2.fasta -------------------------------------------------- d.16.b.A.capsulatum.fasta -------------------------------------------------- d.16.b.H.foetida.fasta -------------------------------------------------- d.16.b.A.globiformis.fasta -------------------------------------------------- d.16.b.M.luteus.fasta -------------------------------------------------- d.16.b.Frankia.sp.fasta -------------------------------------------------- d.16.b.S.bottropensis.fasta -------------------------------------------------- d.16.b.S.scabiei.fasta -------------------------------------------------- d.16.b.S.neyagawaensis.fasta -------------------------------------------------- d.16.b.S.diastatochromogenes.f -------------------------------------------------- d.16.b.Streptomyces.sp.fasta -------------------------------------------------- d.16.b.S.acidiscabies.fasta -------------------------------------------------- d.16.b.S.griseus.fasta -------------------------------------------------- d.16.b.S.ornatus.fasta -------------------------------------------------- d.16.b.S.subrutilus.fasta -------------------------------------------------- d.16.b.S.bikiniensis.fasta -------------------------------------------------- d.16.b.S.galbus.fasta -------------------------------------------------- d.16.b.S.hygroscopicus.fasta -------------------------------------------------- d.16.b.S.lincolnensis.fasta -------------------------------------------------- d.16.b.S.coelicolor.fasta -------------------------------------------------- d.16.b.S.tendae.fasta -------------------------------------------------- d.16.b.S.ambofaciens.fasta -------------------------------------------------- d.16.b.S.eurythermus.fasta -------------------------------------------------- d.16.b.S.nodosus.fasta -------------------------------------------------- d.16.b.S.sampsonii.fasta -------------------------------------------------- d.16.b.S.glaucescens.fasta -------------------------------------------------- d.16.b.S.pseudogriseolus.fasta -------------------------------------------------- d.16.b.S.caelestis.fasta -------------------------------------------------- d.16.b.S.bluensis.fasta -------------------------------------------------- d.16.b.S.espinosus.fasta -------------------------------------------------- d.16.b.S.mashuensis.fasta -------------------------------------------------- d.16.b.S.rimosus.fasta -------------------------------------------------- d.16.b.S.limosus.fasta -------------------------------------------------- d.16.b.S.odorifer.fasta -------------------------------------------------- d.16.b.S.felleus.fasta -------------------------------------------------- d.16.b.S.albidoflavus.fasta -------------------------------------------------- d.16.b.S.gougerotii.fasta -------------------------------------------------- d.16.b.S.rutgersensis.fasta -------------------------------------------------- d.16.b.S.intermedius.fasta -------------------------------------------------- d.16.b.S.thermodiastaticus.fas -------------------------------------------------- d.16.b.S.thermoviolaceus.fasta -------------------------------------------------- d.16.b.S.thermovulgaris.1.fast -------------------------------------------------- d.16.b.S.thermovulgaris.2.fast -------------------------------------------------- d.16.b.S.macrosporus.fasta -------------------------------------------------- d.16.b.S.megasporus.fasta -------------------------------------------------- d.16.b.S.thermolineatus.fasta -------------------------------------------------- d.16.b.M.tuberculosis.2.fasta -------------------------------------------------- d.16.b.M.tuberculosis.3.fasta -------------------------------------------------- d.16.b.M.avium.fasta -------------------------------------------------- d.16.b.M.leprae.fasta -------------------------------------------------- d.16.b.M.leprae.GEN.fasta -------------------------------------------------- d.16.b.M.tuberculosis.CDC1551. -------------------------------------------------- d.16.b.M.tuberculosis.GEN.fast -------------------------------------------------- d.16.b.N.asteroides.fasta -------------------------------------------------- d.16.b.R.erythropolis.fasta -------------------------------------------------- d.16.b.C.diphtheriae.fasta -------------------------------------------------- d.16.b.A.israelii.fasta -------------------------------------------------- d.16.b.B.hyodysenteriae.fasta -------------------------------------------------- d.16.b.G.subterranea.fasta -------------------------------------------------- d.16.b.P.miotherma.fasta -------------------------------------------------- d.16.b.B.andersonii.fasta -------------------------------------------------- d.16.b.H.aurantiacus.fasta -------------------------------------------------- d.16.b.Leptospirillium.sp.fast -------------------------------------------------- d.16.b.A.aeolicus.fasta -------------------------------------------------- d.16.b.A.pyrophilus.fasta -------------------------------------------------- d.16.b.T.maritima.fasta -------------------------------------------------- d.16.b.T.maritima.GEN.fasta -------------------------------------------------- n.16.b.T.thermophilus.2.num.fa -------------------------------------------------- s.16.b.T.thermophilus.2.schem. -------------------------------------------------- d.16.b.T.thermophilus.2.fasta -------------------------------------------------- s.16.b.T.thermophilus.1.schem. -------------------------------------------------- n.16.b.T.thermophilus.1.num.fa -------------------------------------------------- d.16.b.T.thermophilus.1.fasta -------------------------------------------------- d.16.b.T.aquaticus.fasta -------------------------------------------------- d.16.b.T.roseum.fasta -------------------------------------------------- d.16.b.P.marina.fasta -------------------------------------------------- d.16.b.P.staleyi.fasta -------------------------------------------------- d.16.b.P.Schlesner.fasta -------------------------------------------------- d.16.b.G.obscuriglobus.1.fasta -------------------------------------------------- d.16.b.I.pallida.fasta -------------------------------------------------- d.16.a.P.abyssi.fasta -------------------------------------------------- d.16.a.P.horikoshii.fasta -------------------------------------------------- d.16.a.P.furiosus.fasta -------------------------------------------------- d.16.a.T.celer.fasta -------------------------------------------------- d.16.a.A.fulgidus.fasta -------------------------------------------------- d.16.a.N.equitans.fasta -------------------------------------------------- d.16.a.A.pernix.K1.fasta -------------------------------------------------- d.16.a.P.occultum.fasta -------------------------------------------------- d.16.a.T.tenax.fasta -------------------------------------------------- d.16.a.S.acidocaldarius.fasta -------------------------------------------------- d.16.a.S.solfataricus.fasta -------------------------------------------------- d.16.a.S.solfataricus.2.fasta -------------------------------------------------- d.16.a.M.thermautotrophicus.1. -------------------------------------------------- d.16.a.M.thermautotrophicus.2. -------------------------------------------------- d.16.a.M.formicicum.fasta -------------------------------------------------- d.16.a.M.vannielii.fasta -------------------------------------------------- d.16.a.H.marismortui.rrnA.fast -------------------------------------------------- d.16.a.H.marismortui.rrnB.fast -------------------------------------------------- d.16.a.Halobacterium.sp.fasta -------------------------------------------------- d.16.a.N.bangense.fasta -------------------------------------------------- d.16.a.N.innermongoliae.fasta -------------------------------------------------- d.16.a.H.volcanii.fasta -------------------------------------------------- d.16.a.M.hungatei.fasta -------------------------------------------------- d.16.a.P.torridus.fasta -------------------------------------------------- d.16.a.T.acidophilum.fasta -------------------------------------------------- a.16.e.G.ardeae.fasta UGCAC-GCCGGCG---------CGGCACGGC----------------GAA d.16.e.G.intestinalis.fasta UGCAU-GCCCGCU---------CA-CCCGG-----------------GAC a.16.e.G.muris.fasta UGCAA-GCGGACA---------CGAGGUAU-----------------GAA d.16.e.A.bracteata.fasta UGCAU-GCUUGUG---------AAGGAAGC-----------------GGA d.16.e.Glomus.sp.W3349.fasta UGCAU-GUCUAAG------UAUAAAUCGA-UU--AUACAGGUG-----AA d.16.e.S.cerradensis.fasta UGCAU-GUCUAAG------UAUAAAUCGU-UU--AUACAGGUG-----AA a.16.e.G.intraradices.fasta UGCAU-GUCUA-G------UAUAA-UCG--UU--AUACAGGUG-----AA d.16.e.S.culisetae.fasta UGCAUUGUCUAAG------UAUAAACAAAUUU--AUACAG-UG-----AA a.16.e.P.balamuthi.fasta UAUAA-AACCAAG------GAGGAAGCA-AAA--AAGCCA-UA-----AC d.16.e.A.flavus.fasta UGCAU-GUCUAAG------UAUAAGCAC-UUU--AUACUG-UG-----AA d.16.e.T.caries.fasta UGCAU-GUCUAAG------UAUAAGCAACUUU--AUACUG-UG-----AA d.16.e.M.circinelloides.fasta UGCAU-GUCUAAG------UAUAAAUAAAUUU--AUAUUG-UG-----AA d.16.e.M.racemosus.fasta UGCAU-GUCUAAG------UAUAAAUAAAUUU--AUAUUG-UG-----AA d.16.e.R.oryzae.fasta UGCAU-GUCUAAG------UAUAAAUAACUUU--AUAUUG-UG-----AA a.16.e.M.edulis.fasta UGCAU-GUCUAAG------UACAUACUUUUA----CAUA-GUG-----AA a.16.e.P.magellanicus.fasta UGCAU-GUCUAAG------UACAUACUUUUU----GAUG-GUG-----AA b.16.e.E.granulosus.fasta UGCAU-GUCUCAG------UUCAGGCCUUAA----UACG-GUG-----AG d.16.e.D.melanogaster.fasta UGCAU-GUCUAAG------UACACACGAAUU----AAAA-GUG-----AA b.16.e.C.koreana.fasta UGCAU-GUCUAAG------UUCAAGCGAAAAA---UAAA-GUG-----AA b.16.e.A.australis.fasta UGCAU-GUCUAAG------UACAUACCGAAA----UAAG-GUG-----AA b.16.e.O.utahensis.fasta UGCAA-GUCUCAG------UACAUACCUAAC----UAAG-GUG-----AA b.16.e.A.salina.fasta UGCAU-GUCUAAG------UACAAGCCCCCA----GUGG-GCG-----AA d.16.e.M.musculus.fasta UGCAU-GUCUAAG------UACGCACGGCCGG---UACA-GUG-----AA d.16.e.R.norvegicus.fasta UGCAU-GUCUAAG------UACGCACGGCCGG---UACA-GUG-----AA d.16.e.H.sapiens.fasta UGCAU-GUCUAAG------UACGCACGGCCGG---UACA-GUG-----AA d.16.e.O.cuniculus.fasta UGCAU-GUCUAAG------UACGCACGGCCGG---UACA-GUG-----AA d.16.e.X.borealis.fasta UGCAC-GUGUAAG------UACGCACGGCCGG---UACA-GUG-----AA d.16.e.X.laevis.fasta UGCAC-GUGUAAG------UACGCACGGCCGG---UACA-GUG-----AA d.16.e.A.castellanii.fasta UGCAU-GUCUAAG------UAUAAGCUUGUUU--AUACG-GCG-----AG d.16.e.B.mandrillaris.fasta UGCAU-GUCUAAG------UAUAAGCU--UUU--AUACG-GCG-----AG d.16.e.P.falciparum.A.fasta UGCAA-GUGAAAG----UAUAUAUAUAUUUU---AUAUG-UAG-----AA d.16.e.P.falciparum.S.fasta UGCAA-GUGAAAG----UACAUAUGUAAGUA---AUAUA-UUG-----AA d.16.e.P.vivax.A.fasta UGCAA-GUGAAAG----UAUAUGCAUAUUUU---AUAUG-UAG-----AA 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UGCAU-GUCUAAG------UAUAAACAACUUU--AUACU-GUG-----AA d.16.e.P.chromatophora.fasta UGCAU-GUCUAAG------UAUAAGCAACUUU--AUACU-GCG-----AA d.16.e.A.majus.fasta UGCAU-GUGUAAG------UAUGAACUAAUUC--AGACU-GUG-----AA d.16.e.S.indicum.fasta UGCAU-GUGUAAG------UAUGAACUAAUUC--AGACU-GUG-----AA d.16.e.D.grandiflora.fasta UGCAU-GUGUAAG------UAUGAACUAAUUC--AGACU-GUG-----AA d.16.e.Pla.lanceolata.fasta UGCAU-GUGUAAG------UAUGAACUAAUUC--AGACU-GUG-----AA d.16.e.N.tabacum.fasta UGCAU-GUGUAAG------UAUGAACAAAUUC--AGACU-GUG-----AA d.16.e.A.thaliana.fasta UGCAU-GUGUAAG------UAUGAACGAAUUC--AGACU-GUG-----AA d.16.e.S.alba.fasta UGCAU-GUGUAAG------UAUGAACGAAUUC--AGACU-GUG-----AA d.16.e.S.tuberosum.fasta UGCAU-GUGUAAG------UAUGAACAAAUUC--AGACU-GUG-----AA d.16.e.F.x.ananassa.fasta UGCAU-GUGUAAG------UAUGAACUAAUUC--AGACU-GUG-----AA d.16.e.G.max.fasta UGCAU-GUGUAAG------UAUGAACUAAUUC--AGACU-GUG-----AA d.16.e.O.sativa.fasta UGCAU-GUGCAAG------UAUGAACUAAUUC--GAACU-GUG-----AA d.16.e.Z.mays.fasta UGCAU-GUGCAAG------UAUGAACUAAUUC--GAACU-GUG-----AA d.16.e.A.verticilliflorum.fast UGCAU-GUGUAAG------UAUGAACUAAUUA--AGAUG-GUG-----AU d.16.e.G.spirotaenia.fasta UGCAU-GCCUAAG------UAUAAACAAUUUU--AUACU-GUA-----AA d.16.e.Staurastrum.sp.M752.fas UGCAU-GUCUAAG------UAUAAACUCUUUU--AUACU-GUG-----AA d.16.e.C.paradoxa.fasta UGCAU-GUCUAAG------UAUAAACUAUUUU--AUACU-GUG-----AA d.16.e.G.nostochinearum.fasta UGCAU-GUCUAAG------UAUAAACAACUUU--AUACU-GUG-----AA d.16.e.G.wittrockiana.fasta UGCAU-GUCUAAG------UAUAAGCUA-UUU--AUACG-GUG-----AA d.16.e.C.luteoviridis.fasta UGCAU-GUCUAAG------UAUAAACUG-CUU--AUACU-GCG-----AA d.16.e.O.longa.fasta UGCAU-GUCUAAG------UAUAAAUG-UUAU----ACA-GUG-----AA d.16.e.P.weissei.fasta UGCAU-GUCUAAG------UAUAAAUG-UUAU----ACA-GUG-----AA d.16.e.C.citrina.fasta UGCAU-GUCUAAG------UAUAAAUG-UUAU----ACA-GUG-----AA d.16.e.G.steinii.fasta UGCAU-GUCUAAG------UAUAAAUG-UUAU----ACA-GUG-----AA d.16.e.Ple.lanceolata.fasta UGCAU-GUCUAAG------UAUAAAUG-UUAU----ACA-GUG-----AA d.16.e.O.quadricornutus.fasta UGCAU-GUCUAAG------UAUAAAUG-CUAU----ACA-GUG-----AA d.16.e.S.lemnae.fasta UGCAU-GUCUAAG------UAUAAAUG-UUAU----ACA-GUG-----AA d.16.e.S.mytilus.fasta UGCAU-GUCUAAG------UAUAAAUG-UUAU----ACA-GUG-----AA d.16.e.E.mobilis.fasta UGCAU-GUCUAAG------UAUAAAUG-UUAU----ACA-GUG-----AA d.16.e.O.granulifera.1.fasta UGCAU-GUCUAAG------UAUAAAUG-UUAU----ACA-GUG-----AA d.16.e.O.granulifera.2.fasta UGCAU-GUCUAAG------UAUAAAUG-UUAU----ACA-GUG-----AA d.16.e.U.gallina.fasta UGCAU-GUCUAAG------UAUAAAUG-UUAU----ACA-GUG-----AA d.16.e.U.pisces.fasta UGCAU-GUCUAAG------UAUAAAGG-UUAU----ACA-AUG-----AA d.16.e.P.lepisma.fasta UGCAU-GUCUAAG------UAUAAAGG-UUAU----ACA-AUG-----AA d.16.e.U.grandis.fasta UGCAU-GUCUAAG------UAUAAAUG-AUAU----ACA-GUG-----AA d.16.e.B.coli.fasta UGCAU-GUCUAAG------UAUAAAUAACUAC----ACA-GUA-----AA d.16.e.E.aediculatus.fasta UGCAU-GUCUAAG------UAUAAAGG-AUUU----AUA-AUG-----AA d.16.e.T.thermophila.fasta UGCAU-GUGCCAG------U-UCAGUA-UUGA----ACA-GCG-----AA d.16.e.Bangia.sp.NWT.fasta UGCAU-GUCUAAG------UAUAAACACUUUU--AUACUCGUG-----AA d.16.e.Bangia.sp.VIS7.fasta UGCAU-GUCUAAG------UAUAAGCGACUUU--AUACU-GUG-----AA d.16.e.E.carnea.fasta UGCAU-GUCUAAG------UAUAAACGUUUU---AUACC-GUG-----AA d.16.e.R.parvula.fasta UGCAU-GUCUAAG------UAUAAACGUUUUU--AUACC-GUG-----AA d.16.e.C.coeruleus.fasta UGCAU-GUCUAAG------UAUGAAC--UUUU--AUACU-GUG-----AA d.16.e.P.aerugineum.1.fasta UGCAU-GUGUAAG------UAUAAAU--CUUU--AUACG-GUG-----AA d.16.e.R.maculata.fasta UGCAU-GUCUAAG------UAUAAACGCUUUU--AUACU-GUG-----AA d.16.e.A.ambigua.fasta UGCAU-GUGUAAG------UAUAA----GAAG--UA-CU--CG-----AG d.16.e.A.baicalensis.fasta UGCAU-GUGUAAG------UAUAA----GAAC--U--UU--CG-----AG d.16.e.S.nipponica.fasta UGCAU-GUGUCAG------UUUAA----AAAU--UUAUU--UG-----AG d.16.e.C.radiatus.fasta UGCAU-GUCUAAG------UCUAAUUG-GAAU--UGACUAUUG-----AA d.16.e.C.criophilum.fasta UGCAU-GUCUAAG------UAUAA----GCAU--UAUACAGUG-----AA d.16.e.A.capitellata.fasta UGCAA-GUCUAAG------UAUAAA---UCUU--UUACUUUGA-----AA d.16.e.S.pupula.fasta UGCAU-GUCUAAG------UAUAAA---UACC--UUACUUUGA-----AA d.16.e.T.antarctica.fasta UGCAU-GUCUAAG------UAUAAA---UAUU--UUACUUUGA-----AA d.16.e.E.triangulatum.fasta UGCAC-GUCUAAG------UAUAAA---UAUA--UCACUGUGA-----AA d.16.e.A.bongranii.fasta UGCAU-GUCUAAG------UAUAAC---UCUU--UUACU-UGA-----AA d.16.e.Pseudogomphonema.sp.fas UGCAU-GUCUAAG------UAUAAA---UAUU--UUACUUUGA-----AA d.16.e.D.tenue.fasta UGCAU-GUCUAAG------UAUAAA---CCUU--UUACUUUGA-----AA d.16.e.G.marina.fasta UGCAU-GUCUAAG------UAUAAA---UCUC--AUACUUUGA-----AA d.16.e.Thalassionema.sp.fasta UGCAU-GUCUAAG------UAUAAA---UGUU--UUACUUUGA-----AA d.16.e.R.belgicae.fasta UGCAU-GUCUAAG------UAUAAA---UCUC--AUACUUUGA-----AA d.16.e.Undatella.sp.fasta UGCAU-GUCUAAG------UAUAAA---UCUC--UUACUUUGA-----AA d.16.e.C.belgica.fasta UGCAU-GUCUAAG------UAUAAA---UAUU--UUACUUUG------AA d.16.e.O.sinensis.fasta UGCAU-GUCUAAG------UAUAAA---UAUU--AUACAUUG------AA d.16.e.D.brightwellii.fasta UGCAU-GUCUAAG------UAUAAA---UAUU--UUACUGUG------AA d.16.e.L.undulatum.fasta UGCAU-GUCUAAG------UAUAAA---UACU--UUACUGUG------AA d.16.e.T.eccentrica.fasta UGCAU-GUCUAAG------UAUAAC---UCUU--UUACUUUGA-----AA d.16.e.T.pseudonana.fasta UGCAU-GUCUAAG------UACAAC---CAUU--AUACAG-GA-----AA d.16.e.S.costatum.fasta UGCAU-GUGUAAG------UAUAAGA--UACU--UUAUCG--------AA d.16.e.P.laevis.fasta UGCAU-GUCUAAG------UAUAAAU--ACUU--CUACUUUG------AA d.16.e.L.borealis.fasta UGCAU-GUCUAAG------UAUAAA---UCCU--UUACUUUAA-----AA d.16.e.P.pseudodenticulata.fas UGCAU-GUCUAAG------UAUAAA---UAUU--UUACUUUAA-----AA d.16.e.B.mediterranea.fasta UGCAU-GUCUAAG------UAUAAACG-CUUU--AUACUGUGA-----AC d.16.e.B.pacifica.fasta UGCAU-GUCUAAG------UAUAAACG-CUUU--AUACUGUGA-----AA d.16.e.L.minuta.fasta UGCAU-GUCUAAG------UGCAAGCA-CUU---GUACUGUGA-----AA d.16.e.L.danicus.fasta UGCAU-GUCUAAG------UAUGAA---UAUU--AUACAGUGA-----AA d.16.e.Chaetoceros.sp.fasta UGCAU-GUGUAAG------UUCAAU---GAUU--UGACCAAAA-----AA d.16.e.A.invadans.fasta UGCAU-GUCUAAG------UAUAAACAACUUU--GUACUGUGA-----AA d.16.e.L.giganteum.fasta UGCAU-GUCUAAG------UAUAAACAACUUU--GUACUGUGA-----AA d.16.e.M.varians.fasta UGCAU-GUGUCAG------UAUAAA---ACUU--UUGUU---G-----AA d.16.e.B.hominis.fasta UGCAU-GUGUAAG------UGUAAA---UAUA--CUAGUUUGG-----AA d.16.e.P.marinus.fasta UGCAU-GUCUAAG------UAUAAGCU-UUAA----ACG-GCG-----AA d.16.e.T.gondii.fasta UGCAU-GUCUAAG------UAUAAGCU-UUUA---UACG-GCU-----AA d.16.e.A.fundyense.fasta UGCAU-GUCUUAG------UAUAAGCU-UCAA---UUUU-GUG-----AA d.16.e.B.bigemina.fasta UGCAU-GUCUAAG------UACAAGCU-UUU----UACG-GUG-----AA d.16.e.B.canis.fasta UGCAU-GUCUAAG------UACAAGCU-UUU----UACG-GUG-----AA d.16.e.Babesia.sp.OKD.fasta UGCAU-GUCUAAG------UACAAACU-UUU----UACG-GUG-----AA d.16.e.B.microti.1.fasta UGCAU-GUCUUAG------UAUAAGCU-UUUA---UACA-GCG-----AA d.16.e.B.microti.2.fasta UGCAU-GUCUUAG------UAUAAGCU-UUUA---UACA-GCG-----AA d.16.e.B.microti.3.fasta UGCAU-GUCUUAG------UAUAAGCU-UUUA---UACA-GCG-----AA d.16.e.B.microti.4.fasta UGCAU-GUCUUAG------UAUAAGCU-UUUA---UACA-GCG-----AA d.16.e.B.microti.5.fasta UGCAU-GUCUUAG------UAUAAGCU-UUUA---UACA-GCG-----AA d.16.e.B.rodhaini.fasta UGCAU-GUCUAAG------UAUAAGCU-UUUA---UACA-GCG-----AA d.16.e.B.gibsoni.fasta UGCAU-GUCUAAG------UAUAAACU-UUUA---UAUG-GUG-----AA d.16.e.B.bovis.fasta UGCAU-GUCUAAG------UACCAGCU-UGU----UACG-GUG-----AG d.16.e.J.libera.fasta UGCAU-GUCUAAG------UAUGAACCACUCA---UACG-GUG-----AA d.16.e.R.americana.fasta UGCAU-GUCUAAG------UAUGAACC-UUCA---UACG-GUG-----AA d.16.e.B.ostreae.fasta UGCAU-GUCCAAG------UAUAAACACGUUU--GUACU-GUG-----AA d.16.e.A.dasyae.fasta UGCAA-GUGUAAG------UAUAAGUA-AUUU--UUACG-ACG-----AA d.16.e.A.hermannii.fasta UGCAA-GUGUAAG------UAUAAGUA-AUUU--UUACG-ACG-----AA d.16.e.N.helminthoides.fasta UGCAA-GUGUAAG------UAUAAGUA-AUUU--UUACG-ACG-----AA d.16.e.B.gelatinosum.fasta UGCAA-GUGUAAG------UAUAAGUA-AUUU--U-ACG-ACA-----AA d.16.e.N.tortuosa.fasta UGCAA-GUGUAAG------UAUAAGUA-AUUU--UUACG-ACG-----AA d.16.e.T.hispida.fasta UGCAA-GUGUAAG------UAUAAGUUUGAAA--AGAUG-ACG-----AA d.16.e.T.violacea.4.fasta UGCAA-GUGUAAG------UAUAAGUUUGAAA--AGAUG-ACG-----AA d.16.e.T.violacea.1.fasta UGCAA-GUGUAAG------UAUAAGUA-AUUU--UUACG-ACG-----AA d.16.e.T.violacea.2.fasta UGCAA-GUGUAAG------UAUAAGUA-AUUU--UUACG-ACG-----AA d.16.e.N.shawii.fasta UGCAA-GUGUAAG------UAUAAGUA-AUUU--UUACG-ACG-----AA d.16.e.B.investiens.fasta UGCAA-GUGUAAG------UAUAAGUA-AUCU--UUACG-ACG-----AA d.16.e.B.macrosporum.fasta UGCAA-GUGUAAG------UAUAAGUA--AUC--UUACG-ACG-----AA d.16.e.A.plicata.fasta UGCAA-GUGUAAG------UAUAAGUG-AAUU--GUACA-ACG-----AA d.16.e.C.officinalis.fasta UGCAA-GUCUAAG------UAUGAGGA-AUAA--UUAAG-ACG-----AA d.16.e.R.carriebowensis.fasta UGCAA-GUCUAAG------UAUAAGUG-AUUC--UGAUG-ACG-----AA d.16.e.B.hamifera.fasta UGCAA-GUCUAAG------UAUGAGUG-AACU--GUACA-ACG-----AA d.16.e.G.vagum.fasta UGCAA-GUGUAAG------UAUGAGUG-AAUU--GUACA-ACG-----AA d.16.e.C.crispus.fasta UGCAA-GUGUAAG------UAUGAGUG-AAUU--GUACA-ACG-----AA d.16.e.H.plana.fasta UGCAA-GUGUAAG------UAUGAGUG-AAUU--GUACA-ACG-----AA d.16.e.R.leptophylla.fasta UGCAA-GUGUAAG------UAUGAGUG-AAUU--GUACA-ACG-----AA d.16.e.P.pulvinata.fasta UGCAA-GUCUAAG------UAUGAGUG-AUUU--AUACA-ACG-----AA d.16.e.C.rubrum.fasta UGCAA-GUCUAAG------UAUGAGUG-AAUU--GUACA-ACG-----AA d.16.e.Gracilariopsis.sp.fasta UGCAA-GUGCAAG------UAUGAGUG-UAUU--AUACA-ACG-----AA d.16.e.B.moritziana.fasta UGCAA-GUGCCUG------UAUGAGUG-U-UU--AUAUA-ACG-----AA d.16.e.H.rubra.fasta UGCAA-GUGCCAG------UAUGAGUG-AAUU--GUACA-ACG-----AA d.16.e.D.grisea.fasta UGCAA-UUGAAAG------UUUAAGUGAUUUU--CAACU-ACG-----AA d.16.e.N.fowleri.fasta UGCAA-AUGUAAGAUCAGUCAUAUGUGGUUCACGCCAC-UAUAAUGACAG d.16.e.N.gruberi.fasta UGCAA-AUGUAAGAUCAAUCAUAUGCGGUUUCGGCCGUGUAUAAUGAUAG a.16.e.Hexamita.sp.fasta UGCAU--GCCAGG------UAUAAGCUAAUAC----ACAGGUG-----AA d.16.e.T.foetus.fasta UGCA-------AG------UGUUAGUUCAGGC----A---ACG-----AA d.16.e.A.khaliulini.fasta UGCAA-GUCU---------GUGAA-UCUUUAUA-------GAG-----AA d.16.e.E.aedis.fasta UGCAA-GUCU---------GUGAA-UAUAU------------G-----AA d.16.e.A.connecticus.fasta UGCAA-GCUU---------GUGAA-UAUUAUAU-------AUG-----AA d.16.e.I.barri.fasta UGCAA-GUCU---------GUGAA-UGUCU------------G-----AA d.16.e.A.ferocious.fasta UGCAA-GCCU---------GUGAA-UACUU------------G-----AA d.16.e.Amblyospora.sp.fasta UGCAA-GUCU---------GUGAAGUUUCUUAU-------AUG-----AA d.16.e.C.lunata.fasta UGCAA-GCUU---------GUGAA-UAAAUCCU---------G-----AA d.16.e.P.anophelis.fasta UGCAA-GUUU---------GCGAGCUG----------------------A d.16.e.Hazardia.sp.fasta UGCAA-GCCA---------GCGAAGUUUAAC-----------G-----GA d.16.e.H.milleri.fasta UGCAA-GCCA---------GCGAAGGU-AAC-----------G-----GA d.16.e.P.simulii.fasta UGCAU-GUCUA--------GCGAAGCGUAAGU----------G-----GA d.16.e.W.palustris.fasta UGCAU-GUCUA--------GCGAAGCUUCGGU----------G-----GA d.16.e.Nosema.sp.03.fasta UGCAU-GUUU---------AUUGAAUAUAAAG----------------AA d.16.e.Nosema.sp.05.fasta UGCAU-GUUU---------AUUGAAUAUAAAG----------------AA d.16.e.Endoreticulatus.sp.fast UGCAU-GUUU---------AUUGAAUAUAAAG----------------AA d.16.e.Nosema.sp.02.fasta UGCAU-GUUU---------AUUGAAUAUAAAG----------------AA d.16.e.N.spodopterae.fasta UGCAU-GUUU---------AUUGAAUAUAAAG----------------AA d.16.e.N.trichoplusiae.fasta UGCAU-GUUU---------AUUGAAUAUAAAG----------------AA d.16.e.N.bombycis.27.fasta UGCAU-GUUU---------AUUGAAUAUAAAG----------------AA d.16.e.N.bombycis.02.fasta UGCAU-GUUU---------AUUGAAUAUAAAG----------------AA d.16.e.V.imperfecta.fasta UGCAU-GUU----------AUUGAAUAUAAAG----------------AA d.16.e.N.furnacalis.fasta UGCAU-GUUU---------AUUGAAUAUAAAG----------------AA d.16.e.Microsporidium57864.fas UGCAU-GUUU---------UUGACAUUU--------------------GA d.16.e.Vairimorpha.sp.C21.fast UGCAU-GUUU---------UUGACAUUU--------------------GA d.16.e.N.oulemae.fasta UGCAU-GUUU---------UUGACAUUUAUU-----------U-----GA d.16.e.N.necatrix.fasta UGCAU-GUUU---------UUGAUAUG---------------------GA d.16.e.V.necatrix.fasta UGCAU-GUUU---------UUGAUAUG---------------------GA d.16.e.N.apis.fasta UGCAU-GUCU---------UUGACGUACUAUGU-------ACU-----GA d.16.e.O.occidentalis.fasta UGCAU-GUUC---------UUGACGAUUAUA---------UCU-----GA d.16.e.Microsporidium.sp.DP119 UGCAU-GUUU---------UGUGAAUUCUUACG-------AAG-----GA d.16.e.V.corneae.fasta UGCAU-GUUU---------CCUCAAUC----------------------A d.16.e.A.michaelis.fasta UGCAA-GUAG---------UAUGUAUGUAAUA---------CA-----CA d.16.e.T.contejeani.fasta UGCAU-GUGUAGAAUG--AAGUGAAGCCGUUAG-------GUG-----GA d.16.e.E.hellem.fasta UGCAU-GUUU---------AUGAAGCCUUUAUG-------GGG-----GA d.16.e.Encephalitozoon.sp.fast UGCAU-GUUG---------AUGAA--CCUUGUG-------GGG-----GA d.16.e.E.cuniculi.fasta UGCAU-GCUU---------GUGAACUCUUUGUG-------GGG-----GA d.16.e.O.colligata.fasta UGCAU-GUGA---------GUGAAUGUAGUAAG-------CAG-----GA d.16.e.E.salmonis.fasta UGCAU-GCUU---------UGUGAACCCAGACG-------GGG-----GA d.16.e.N.salmonis.fasta UGCAU-GCUU---------UGUGAACCCAGACG-------GGG-----GA d.16.e.Enterocytozoonidae.sp.f UGCAU-GCUG---------CGUGAACUUUUA----------GG-----GA d.16.e.E.bieneusi.fasta UGCAU-GUCA----------GUGAAGCCUUACG-------GUG-----GA d.16.e.B.algerae.fasta UGCAU-GCUU---------UUCGAACCCUCGUG-------GGG-----A- d.16.e.T.solenopsae.fasta UGCAU-GCUU---------A-CGAACCCACGUG-------GGG-----A- d.16.e.V.acridophagus.fasta UGCAU-GCUU---------UACGAAUUCACAAG-------AAG-----AA d.16.e.Bacillidium.sp.fasta UGCAA-GUUA----------GCGAAUCUAAAUG--------UG-----AA d.16.e.P.cristatellae.fasta UGCAA-GCUA----------GCGAAGCCUUAUG-------GUG-----GA d.16.e.Pleistophora.sp.fasta UGCAU-GUCU----------AUGAAAC----------------------A d.16.e.O.operophterae.fasta UGCAU-GCCC----------GUGACGCAA-------------G-----GA d.16.e.F.magnivora.fasta UGCAA-GUCU---------GGUGAAGCGAAAG---------UG-----GA d.16.e.G.atherinae.fasta UGCAU-GUGCA--------AGCGAAGC-GUAAG--------UG-----GA d.16.e.Ichthyosporidium.sp.fas UGGAU-GUCUA--------AGCAAAGC-GUAAG--------UC-----GA d.16.e.L.acerinae.fasta UGCAU-GUGUA--------AGCAAAGCUAGAAG--------UG-----GA d.16.e.H.anguillarum.fasta UGCAU-GUGUA--------GGCGAAGCAUUUUG--------UG-----GA d.16.e.P.mirandellae.fasta UGCAU-GUGUA--------AGCGAAGCAUUUUG--------UG-----GA d.16.e.T.hominis.fasta UGCAU-GUGCA--------AGCGAAGCCGGUGG--------UG-----GG d.16.e.V.culicis.fasta UGCAU-GUGCA--------AGCGAAGCCGGUGG--------UG-----GA d.16.e.P.hippoglossoideos.fast UGCAU-GUGUA--------AGCGAAGCUUUUAG--------UG-----GA d.16.e.Microgemma.sp.fasta UGCAU-GUGUA--------AGCGAAGCGAUUAG--------UG-----GA d.16.e.S.lophii.fasta UGCAU-GUGUA--------AGCGAAGCGAUUAG--------UG-----AA d.16.e.Pleistophora.sp.LS.fast UGCAA-UUUUA--------G--GGAACCAUAUG--------GG-----GA d.16.e.D.gammarellum.fasta UGCAU-GUGUA--------AGCGAAGCAUAUUG--------UG-----GA d.16.e.M.prosopium.fasta UGCAU-GUGUA--------AGCGAAGCUUUUAG--------UG-----GA d.16.e.A.scoticae.fasta UGCAA-GCUAGCG---------AAGCGGAGCG----------------GA d.16.e.P.whitei.fasta UGCAA-GCCAGCG---------AAGCAGCGCG----------------GA a.16.c.C.coccineum.fasta -------------------------------------------------- a.16.c.C.ruber.fasta -------------------------------------------------- d.16.c.N.tabacum.fasta -------------------------------------------------- d.16.c.S.oleracea.fasta -------------------------------------------------- d.16.c.Z.mays.fasta -------------------------------------------------- d.16.c.M.polymorpha.fasta -------------------------------------------------- d.16.c.R.communis.fasta -------------------------------------------------- d.16.c.C.vulgaris.fasta -------------------------------------------------- d.16.c.P.wickerhamii.fasta -------------------------------------------------- d.16.c.P.minor.fasta -------------------------------------------------- d.16.c.N.olivacea.fasta -------------------------------------------------- d.16.c.P.parkeae.fasta -------------------------------------------------- d.16.c.C.reinhardtii.fasta -------------------------------------------------- b.16.m.A.castellanii.fasta -------------------------------------------------- d.16.c.P.thurberi.fasta -------------------------------------------------- b.16.m.C.crispus.fasta -------------------------------------------------- d.16.c.T.gondii.fasta -------------------------------------------------- b.16.m.N.crassa.fasta -------------------------------------------------- b.16.m.P.anserina.fasta -------------------------------------------------- b.16.m.P.chrysogenum.fasta -------------------------------------------------- b.16.m.E.nidulans.fasta -------------------------------------------------- b.16.m.S.cerevisiae.fasta -------------------------------------------------- b.16.m.W.saturnus.m.fasta -------------------------------------------------- b.16.m.P.minor.fasta -------------------------------------------------- d.16.c.P.falciparum.fasta -------------------------------------------------- d.16.c.B.bovis.fasta -------------------------------------------------- b.16.m.T.pyriformis.fasta -------------------------------------------------- d.16.m.S.sinuspaulianus.fasta -------------------------------------------------- b.16.m.P.tetraurelia.fasta -------------------------------------------------- b.16.m.D.discoideum.fasta -------------------------------------------------- d.16.m.P.polycephalum.fasta -------------------------------------------------- b.16.m.P.littoralis.fasta -------------------------------------------------- b.16.m.P.wickerhamii.fasta -------------------------------------------------- d.16.c.H.africana.fasta -------------------------------------------------- d.16.c.C.fragile.fasta -------------------------------------------------- d.16.c.C.sertularioides.fasta -------------------------------------------------- d.16.c.C.humicola.fasta -------------------------------------------------- d.16.c.P.uvella.fasta -------------------------------------------------- a.16.c.G.nostochinearum.fasta -------------------------------------------------- a.16.c.G.wittrockiana.fasta -------------------------------------------------- d.16.c.C.paradoxa.fasta -------------------------------------------------- d.16.y.C.paradoxa.fasta -------------------------------------------------- d.16.c.Cryptomonas.sp.fasta -------------------------------------------------- d.16.c.P.palmata.fasta -------------------------------------------------- d.16.c.H.akashiwo.fasta -------------------------------------------------- d.16.c.S.pseudocostatum.fasta -------------------------------------------------- d.16.c.P.littoralis.fasta -------------------------------------------------- d.16.c.C.caldarium.fasta -------------------------------------------------- a.16.c.E.huxleyi.fasta -------------------------------------------------- d.16.c.E.gracilis.fasta -------------------------------------------------- d.16.b.Anabaena.sp.fasta -------------------------------------------------- d.16.b.Chlorogloeopsis.PCC7518 -------------------------------------------------- d.16.b.Synechococcus.sp.fasta -------------------------------------------------- d.16.b.Synechocystis.PCC6803.G -------------------------------------------------- d.16.b.O.agardhii.fasta -------------------------------------------------- d.16.b.Pleurocapsa.7516.fasta -------------------------------------------------- d.16.b.M.aeruginosa.fasta -------------------------------------------------- b.16.m.C.reinhardtii.fasta -------------------------------------------------- d.16.m.C.eugametos.fasta -------------------------------------------------- b.16.m.M.senile.fasta -------------------------------------------------- d.16.b.S.pneumoniae.fasta -------------------------------------------------- d.16.b.S.pyogenes.fasta -------------------------------------------------- d.16.b.B.anthracis.fasta -------------------------------------------------- d.16.b.B.cereus.1.fasta -------------------------------------------------- d.16.b.E.faecalis.fasta -------------------------------------------------- d.16.b.E.faecium2.fasta -------------------------------------------------- d.16.b.L.monocytogenes.fasta -------------------------------------------------- d.16.b.B.subtilis.fasta -------------------------------------------------- d.16.b.B.subtilis.GEN.fasta -------------------------------------------------- d.16.b.B.halodurans.fasta -------------------------------------------------- d.16.b.S.aureus.fasta -------------------------------------------------- d.16.b.S.aureus.GEN.fasta -------------------------------------------------- d.16.b.L.lactis.GEN.fasta -------------------------------------------------- d.16.b.S.pyogenes.GEN.fasta -------------------------------------------------- d.16.b.L.acidophilus.fasta -------------------------------------------------- d.16.b.M.capricolum.fasta -------------------------------------------------- d.16.b.M.mycoides.fasta -------------------------------------------------- d.16.b.E.rhusiopathiae.fasta -------------------------------------------------- d.16.b.C.innocuum.fasta -------------------------------------------------- d.16.b.M.genitalium.fasta -------------------------------------------------- d.16.b.M.pneumoniae.GEN.fasta -------------------------------------------------- d.16.b.M.pneumoniae.fasta -------------------------------------------------- d.16.b.M.gallisepticum.fasta -------------------------------------------------- d.16.b.U.urealyticum.fasta -------------------------------------------------- d.16.b.U.urealyticum.GEN.fasta -------------------------------------------------- d.16.b.M.hyopneumoniae.fasta -------------------------------------------------- d.16.b.F.necrophorum.fasta -------------------------------------------------- d.16.b.F.nucleatum.fasta -------------------------------------------------- d.16.b.S.moniliformis.fasta -------------------------------------------------- d.16.b.C.botulinum.F.fasta -------------------------------------------------- d.16.b.C.tetani.fasta -------------------------------------------------- d.16.b.C.perfringens.fasta -------------------------------------------------- d.16.b.C.difficile.fasta -------------------------------------------------- d.16.b.E.brachy.fasta -------------------------------------------------- d.16.b.Epulopiscium.sp.fasta -------------------------------------------------- d.16.b.H.chlorum.fasta -------------------------------------------------- b.16.m.G.max.fasta -------------------------------------------------- b.16.m.O.berteriana.fasta -------------------------------------------------- b.16.m.S.cereale.fasta -------------------------------------------------- b.16.m.T.aestivum.fasta -------------------------------------------------- d.16.m.Z.mays.fasta -------------------------------------------------- b.16.m.M.polymorpha.fasta -------------------------------------------------- b.16.m.N.olivacea.fasta -------------------------------------------------- d.16.b.G.liquefaciens.fasta -------------------------------------------------- d.16.b.B.japonicum.fasta -------------------------------------------------- d.16.b.R.acidophilus.fasta -------------------------------------------------- d.16.b.A.caulinodans.fasta -------------------------------------------------- d.16.b.B.quintana.fasta -------------------------------------------------- d.16.b.M.loti.fasta -------------------------------------------------- d.16.b.A.tumefaciens.fasta -------------------------------------------------- d.16.b.B.bacilliformis.fasta -------------------------------------------------- d.16.b.B.henselae.fasta -------------------------------------------------- d.16.b.B.melitensis.fasta -------------------------------------------------- d.16.b.R.orientis.fasta -------------------------------------------------- d.16.b.Methylobacterium.sp.fas -------------------------------------------------- d.16.b.R.bellii.fasta -------------------------------------------------- d.16.b.R.felis.URRWXCal2.fasta -------------------------------------------------- d.16.b.R.prowazekii.fasta -------------------------------------------------- d.16.b.R.prowazekii.GEN.fasta -------------------------------------------------- d.16.b.R.rickettsii.fasta -------------------------------------------------- d.16.b.A.calcoaceticus.fasta -------------------------------------------------- d.16.b.P.pacificensis.fasta -------------------------------------------------- d.16.b.C.marismortui.fasta -------------------------------------------------- d.16.b.H.halodenitrificans.fas -------------------------------------------------- d.16.b.P.aeruginosa.fasta -------------------------------------------------- d.16.b.P.aeruginosa.GEN.fasta -------------------------------------------------- d.16.b.Pseudomonas.sp.fasta -------------------------------------------------- d.16.b.P.putida.fasta -------------------------------------------------- d.16.b.C.burnetii.fasta -------------------------------------------------- d.16.b.M.capsulatus.fasta -------------------------------------------------- d.16.b.L.pneumophila.1.fasta -------------------------------------------------- d.16.b.L.pneumophila.2.fasta -------------------------------------------------- d.16.b.A.vinosum.fasta -------------------------------------------------- d.16.b.Beggiatoa.sp.fasta -------------------------------------------------- d.16.b.A.hydrophila.fasta -------------------------------------------------- d.16.b.S.putrefaciens.fasta -------------------------------------------------- d.16.b.C.freundii.fasta -------------------------------------------------- d.16.b.S.dysenteriae.1.fasta -------------------------------------------------- d.16.b.K.pneumoniae.fasta -------------------------------------------------- d.16.b.P.shigelloides.fasta -------------------------------------------------- d.16.b.Y.pestis.fasta -------------------------------------------------- d.16.b.Y.pseudotuberculosis.fa -------------------------------------------------- d.16.b.S.dysenteriae.2.fasta -------------------------------------------------- d.16.b.E.coli.0157G.GEN.fasta -------------------------------------------------- d.16.b.E.coli.EDL.GEN.fasta -------------------------------------------------- d.16.b.E.coli.fasta -------------------------------------------------- d.16.b.E.coli.K12.GEN.fasta -------------------------------------------------- h.16.b.E.coli.hlxnum.fasta -------------------------------------------------- m.16.b.E.coli.mhg.fasta -------------------------------------------------- s.16.b.E.coli.schem.fasta -------------------------------------------------- d.16.b.S.typhimurium.fasta -------------------------------------------------- d.16.b.S.marcescens.fasta -------------------------------------------------- d.16.b.E.tarda.fasta -------------------------------------------------- d.16.b.P.vulgaris.fasta -------------------------------------------------- d.16.b.V.cholerae4.fasta -------------------------------------------------- d.16.b.V.cholerae5.fasta -------------------------------------------------- d.16.b.V.cholerae2.fasta -------------------------------------------------- d.16.b.V.cholerae6.fasta -------------------------------------------------- d.16.b.V.cholerae.fasta -------------------------------------------------- d.16.b.V.cholerae.GEN.fasta -------------------------------------------------- d.16.b.V.parahaemolyticus.fast -------------------------------------------------- d.16.b.H.influenzae7.fasta -------------------------------------------------- d.16.b.H.influenzae8.fasta -------------------------------------------------- d.16.b.H.influenzae6.fasta -------------------------------------------------- d.16.b.H.influenz.fasta -------------------------------------------------- d.16.b.H.influenzae.fasta -------------------------------------------------- d.16.b.P.multocida.fasta -------------------------------------------------- d.16.b.P.multocida.GEN.fasta -------------------------------------------------- d.16.b.X.albilineans.fasta -------------------------------------------------- d.16.b.X.campestris.fasta -------------------------------------------------- d.16.b.X.fastidiosa.GEN.fasta -------------------------------------------------- d.16.b.D.nodosus.fasta -------------------------------------------------- d.16.b.F.tularensis.fasta -------------------------------------------------- d.16.b.B.parapertussis.fasta -------------------------------------------------- d.16.b.B.pertussis.fasta -------------------------------------------------- d.16.b.B.bronchiseptica2.fasta -------------------------------------------------- d.16.b.u.proteobacterium.fasta -------------------------------------------------- d.16.b.B.mallei.fasta -------------------------------------------------- d.16.b.Burkholderia.sp.fasta -------------------------------------------------- d.16.b.N.meningitidis.MD58.GEN -------------------------------------------------- d.16.b.N.meningitidis.Z2491.GE -------------------------------------------------- d.16.b.N.gonorrhoeae.fasta -------------------------------------------------- d.16.b.C.testosteroni.fasta -------------------------------------------------- d.16.b.D.desulfuricans.fasta -------------------------------------------------- d.16.b.M.xanthus.fasta -------------------------------------------------- d.16.b.D.thermophilus.fasta -------------------------------------------------- d.16.b.B.burgdorferi.fasta -------------------------------------------------- d.16.b.B.burgdorferi.GEN.fasta -------------------------------------------------- d.16.b.B.hermsii.fasta -------------------------------------------------- d.16.b.S.aurantia.fasta -------------------------------------------------- d.16.b.T.pallidum.A.fasta -------------------------------------------------- d.16.b.L.illini.fasta -------------------------------------------------- d.16.b.L.interrogans.fasta -------------------------------------------------- d.16.b.C.trachomatis.GEN.fasta -------------------------------------------------- d.16.b.C.trachomatis.L2.fasta -------------------------------------------------- d.16.b.C.muridarum.fasta -------------------------------------------------- d.16.b.C.pneumoniae.AR39.fasta -------------------------------------------------- d.16.b.C.pneumoniae.fasta -------------------------------------------------- d.16.b.C.pneumoniae.J138.fasta -------------------------------------------------- d.16.b.C.pneumoniae.CWL029.fas -------------------------------------------------- d.16.b.C.psittaci.fasta -------------------------------------------------- d.16.b.D.radiodurans.1.fasta -------------------------------------------------- d.16.b.D.radiodurans.GEN.fasta -------------------------------------------------- d.16.b.B.fragilis.fasta -------------------------------------------------- d.16.b.P.gingivalis.fasta -------------------------------------------------- d.16.b.C.vibrioforme.fasta -------------------------------------------------- d.16.b.C.jejuni.fasta -------------------------------------------------- d.16.b.C.jejuni.GEN.fasta -------------------------------------------------- d.16.b.C.sputorum.fasta -------------------------------------------------- d.16.b.H.pylori.26695.GEN.fast -------------------------------------------------- d.16.b.H.pylori.J99.GEN.fasta -------------------------------------------------- d.16.b.H.pylori2.fasta -------------------------------------------------- d.16.b.A.capsulatum.fasta -------------------------------------------------- d.16.b.H.foetida.fasta -------------------------------------------------- d.16.b.A.globiformis.fasta -------------------------------------------------- d.16.b.M.luteus.fasta -------------------------------------------------- d.16.b.Frankia.sp.fasta -------------------------------------------------- d.16.b.S.bottropensis.fasta -------------------------------------------------- d.16.b.S.scabiei.fasta -------------------------------------------------- d.16.b.S.neyagawaensis.fasta -------------------------------------------------- d.16.b.S.diastatochromogenes.f -------------------------------------------------- d.16.b.Streptomyces.sp.fasta -------------------------------------------------- d.16.b.S.acidiscabies.fasta -------------------------------------------------- d.16.b.S.griseus.fasta -------------------------------------------------- d.16.b.S.ornatus.fasta -------------------------------------------------- d.16.b.S.subrutilus.fasta -------------------------------------------------- d.16.b.S.bikiniensis.fasta -------------------------------------------------- d.16.b.S.galbus.fasta -------------------------------------------------- d.16.b.S.hygroscopicus.fasta -------------------------------------------------- d.16.b.S.lincolnensis.fasta -------------------------------------------------- d.16.b.S.coelicolor.fasta -------------------------------------------------- d.16.b.S.tendae.fasta -------------------------------------------------- d.16.b.S.ambofaciens.fasta -------------------------------------------------- d.16.b.S.eurythermus.fasta -------------------------------------------------- d.16.b.S.nodosus.fasta -------------------------------------------------- d.16.b.S.sampsonii.fasta -------------------------------------------------- d.16.b.S.glaucescens.fasta -------------------------------------------------- d.16.b.S.pseudogriseolus.fasta -------------------------------------------------- d.16.b.S.caelestis.fasta -------------------------------------------------- d.16.b.S.bluensis.fasta -------------------------------------------------- d.16.b.S.espinosus.fasta -------------------------------------------------- d.16.b.S.mashuensis.fasta -------------------------------------------------- d.16.b.S.rimosus.fasta -------------------------------------------------- d.16.b.S.limosus.fasta -------------------------------------------------- d.16.b.S.odorifer.fasta -------------------------------------------------- d.16.b.S.felleus.fasta -------------------------------------------------- d.16.b.S.albidoflavus.fasta -------------------------------------------------- d.16.b.S.gougerotii.fasta -------------------------------------------------- d.16.b.S.rutgersensis.fasta -------------------------------------------------- d.16.b.S.intermedius.fasta -------------------------------------------------- d.16.b.S.thermodiastaticus.fas -------------------------------------------------- d.16.b.S.thermoviolaceus.fasta -------------------------------------------------- d.16.b.S.thermovulgaris.1.fast -------------------------------------------------- d.16.b.S.thermovulgaris.2.fast -------------------------------------------------- d.16.b.S.macrosporus.fasta -------------------------------------------------- d.16.b.S.megasporus.fasta -------------------------------------------------- d.16.b.S.thermolineatus.fasta -------------------------------------------------- d.16.b.M.tuberculosis.2.fasta -------------------------------------------------- d.16.b.M.tuberculosis.3.fasta -------------------------------------------------- d.16.b.M.avium.fasta -------------------------------------------------- d.16.b.M.leprae.fasta -------------------------------------------------- d.16.b.M.leprae.GEN.fasta -------------------------------------------------- d.16.b.M.tuberculosis.CDC1551. -------------------------------------------------- d.16.b.M.tuberculosis.GEN.fast -------------------------------------------------- d.16.b.N.asteroides.fasta -------------------------------------------------- d.16.b.R.erythropolis.fasta -------------------------------------------------- d.16.b.C.diphtheriae.fasta -------------------------------------------------- d.16.b.A.israelii.fasta -------------------------------------------------- d.16.b.B.hyodysenteriae.fasta -------------------------------------------------- d.16.b.G.subterranea.fasta -------------------------------------------------- d.16.b.P.miotherma.fasta -------------------------------------------------- d.16.b.B.andersonii.fasta -------------------------------------------------- d.16.b.H.aurantiacus.fasta -------------------------------------------------- d.16.b.Leptospirillium.sp.fast -------------------------------------------------- d.16.b.A.aeolicus.fasta -------------------------------------------------- d.16.b.A.pyrophilus.fasta -------------------------------------------------- d.16.b.T.maritima.fasta -------------------------------------------------- d.16.b.T.maritima.GEN.fasta -------------------------------------------------- n.16.b.T.thermophilus.2.num.fa -------------------------------------------------- s.16.b.T.thermophilus.2.schem. -------------------------------------------------- d.16.b.T.thermophilus.2.fasta -------------------------------------------------- s.16.b.T.thermophilus.1.schem. -------------------------------------------------- n.16.b.T.thermophilus.1.num.fa -------------------------------------------------- d.16.b.T.thermophilus.1.fasta -------------------------------------------------- d.16.b.T.aquaticus.fasta -------------------------------------------------- d.16.b.T.roseum.fasta -------------------------------------------------- d.16.b.P.marina.fasta -------------------------------------------------- d.16.b.P.staleyi.fasta -------------------------------------------------- d.16.b.P.Schlesner.fasta -------------------------------------------------- d.16.b.G.obscuriglobus.1.fasta -------------------------------------------------- d.16.b.I.pallida.fasta -------------------------------------------------- d.16.a.P.abyssi.fasta -------------------------------------------------- d.16.a.P.horikoshii.fasta -------------------------------------------------- d.16.a.P.furiosus.fasta -------------------------------------------------- d.16.a.T.celer.fasta -------------------------------------------------- d.16.a.A.fulgidus.fasta -------------------------------------------------- d.16.a.N.equitans.fasta -------------------------------------------------- d.16.a.A.pernix.K1.fasta -------------------------------------------------- d.16.a.P.occultum.fasta -------------------------------------------------- d.16.a.T.tenax.fasta -------------------------------------------------- d.16.a.S.acidocaldarius.fasta -------------------------------------------------- d.16.a.S.solfataricus.fasta -------------------------------------------------- d.16.a.S.solfataricus.2.fasta -------------------------------------------------- d.16.a.M.thermautotrophicus.1. -------------------------------------------------- d.16.a.M.thermautotrophicus.2. -------------------------------------------------- d.16.a.M.formicicum.fasta -------------------------------------------------- d.16.a.M.vannielii.fasta -------------------------------------------------- d.16.a.H.marismortui.rrnA.fast -------------------------------------------------- d.16.a.H.marismortui.rrnB.fast -------------------------------------------------- d.16.a.Halobacterium.sp.fasta -------------------------------------------------- d.16.a.N.bangense.fasta -------------------------------------------------- d.16.a.N.innermongoliae.fasta -------------------------------------------------- d.16.a.H.volcanii.fasta -------------------------------------------------- d.16.a.M.hungatei.fasta -------------------------------------------------- d.16.a.P.torridus.fasta -------------------------------------------------- d.16.a.T.acidophilum.fasta -------------------------------------------------- a.16.e.G.ardeae.fasta GGGGCGGACGGCUCAGU--ACACCGGUUGCA--CCCUGCGCGGCGGUCGG d.16.e.G.intestinalis.fasta GCGGCGGACGGCUCAGG--ACAACGGUUGCA--CCCCCCGCGGCGGUCCC a.16.e.G.muris.fasta GUGGCGGACGGCUCGGU--ACAACGGUACGA--GUCUGACCGGGGGUGAA d.16.e.A.bracteata.fasta 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ACUGCGAAUGGCUCGGU--AAAACAGCUAUA--GUUUCUUCGAUGGUACC d.16.e.B.gelatinosum.fasta ACUGCGAAUGGCUCGGU--AAAACAGCUAUA--GUUUCUUCGAUGGUACC d.16.e.N.tortuosa.fasta ACUGCGAAUGGCUCGGU--AAAACAGCUAUA--GUUUCUUCGAUGCUAAC d.16.e.T.hispida.fasta ACUGCGAAUGGCUCGGU--AAAACAGCUAUA--GUUUCUUCGAUGAUAAU d.16.e.T.violacea.4.fasta ACUGCGAAUGGCUCGGU--AAAACAGCUAUA--GUUUCUUCGAUGAUAGU d.16.e.T.violacea.1.fasta ACUGCGAAUGGCUCGGU--AAAACAGCUAUA--GUUUCUUCGAUGCUAAC d.16.e.T.violacea.2.fasta ACUGCGAAUGGCUCGGU--AAAACAGCUAUA--GUUUCUUCGAUGCUAAC d.16.e.N.shawii.fasta ACUGCGAAUGGCUCGGU--AAAACAGCUAUA--GUUUCUUCGAUGCUAAC d.16.e.B.investiens.fasta ACUGCGAAUGGCUCGGU--AAAACAGCUAUA--GUUUCUUCGAUGGUACC d.16.e.B.macrosporum.fasta ACUGCGAAUGGCUCGGU--AAAACAGUUAUA--GUUUCUUCGAUGUUACC d.16.e.A.plicata.fasta ACUGCGAAUGGCUCGGU--AAAACAGCUAUA--GUUUCUUCGAUGAUACC d.16.e.C.officinalis.fasta ACUGCGAAUGGCUCGGU--AAAACAGCAAUA--AUUUCUUCGGUGAUU-U d.16.e.R.carriebowensis.fasta ACUGCGAAUGGCUCGGU--AAAACAGCUAUA--AUUUCUUCGAUGGUAAC d.16.e.B.hamifera.fasta ACUGCGAAUGGCUCGGU--AAAACAGCUAUA--AUUUCUUCGAUGGUAA- d.16.e.G.vagum.fasta ACUGCGAAUGGCUCGGU--AAAACAGCUAUA--GUUUCUUCGAUGGUAA- d.16.e.C.crispus.fasta ACUGCGAAUGGCUCGGU--AAAACAGCUAUA--GUUUCUUCGAUGGUAA- d.16.e.H.plana.fasta ACUGCGAAUGGCUCGGU--AAAACAGCUAUA--GUUUCUUCGAUGGUA-- d.16.e.R.leptophylla.fasta ACUGCGAAUGGCUCGGU--AAAACAGCUAUA--GUUUCUUCGAUGAUA-- d.16.e.P.pulvinata.fasta ACUGCGAAUGGCUCGGU--AAAACAGCUAUA--GUUUCUUCGAUGUUA-- d.16.e.C.rubrum.fasta ACUGCGAAUGGCUCGGU--AAAACAGCUAUA--GUUUCUUCGAUGGUAAA d.16.e.Gracilariopsis.sp.fasta ACUGCGAAUGGCUCUGU--AAAACAGCUAUA--AUUUCUUCGGUGCUAA- d.16.e.B.moritziana.fasta ACUGCGAAUGGCUCGGU--AAAACAGUAAAA--AUUUUUUCGGAGAAAA- d.16.e.H.rubra.fasta ACUGCGAAUGGCUCGGU--AAAACAGCUAUA--GUUUCUUCGGGGGUAA- d.16.e.D.grisea.fasta ACUGUGGACAGCUCAUU--AAACCAGUUGUU--AUUUAUUUGAUAGUAAA d.16.e.N.fowleri.fasta UCUGUGGAAGGCUCAUU--AUAACAGUUAUAC-ACCUAGCCACUGGAAAG d.16.e.N.gruberi.fasta UCUGUGGAAGGCUCAUU--AUAACAGUUAUAC-UCCUAGCCACUGGAAAG a.16.e.Hexamita.sp.fasta ACUGCGAACGGCUCAUU--AAAUCAGUUGAA--AUGUCUCGUGCUUUAUU d.16.e.T.foetus.fasta ACUGCGAACAGCUCAUU--AACACGCUCAGA--AUCUACUUGGUGGCGAC d.16.e.A.khaliulini.fasta ACAGUGAACGGCUCAGU--AUAACACGUCU-------AUCUACCCAUCGU d.16.e.E.aedis.fasta ACAGUGUACGGCUCAGU--AUAACACCUAU-------AUCUACCCACUUU d.16.e.A.connecticus.fasta ACAGUGAACGGCUCAGU--AUAACACGUCU-------AUCUACCC-CAUA d.16.e.I.barri.fasta ACAGUGUACGGCUCAGU--AGAACACGUCU-------AUCUACCCAUUUA d.16.e.A.ferocious.fasta ACAGUGAACGGCUCAGU--AUAACACGUCU-------AUCUACCCACNAA d.16.e.Amblyospora.sp.fasta ACAGUGUACGGCUCAGU--AAAACACGUCA-------AUCUACCCACUUA d.16.e.C.lunata.fasta ACAGUGAACGGCUCAGU--AGAACACAUUUC------AUCUACCCA--AG d.16.e.P.anophelis.fasta GCAGCGAACGGCUCAGU--AAAACAGGGCAC------UCUAACGCACGGA d.16.e.Hazardia.sp.fasta GCGGCGAACGGCUCAGU--AGGACAGGGAU-------AUCUGACCACGGC d.16.e.H.milleri.fasta GCGGCGAACGGCUCAGU--AGGACAGGAAA-------AUCUGGCCACGUA d.16.e.P.simulii.fasta GCGGCGAACGGCUCAGU--AAUACAGUUAUG------AUCUAUUCAUGCA d.16.e.W.palustris.fasta GCGGCGAACGGCUCAGU--AAUACAGUUAUG------AUCUACUCACACA d.16.e.Nosema.sp.03.fasta AAGACGAACAGCUCAGU--AACUCUUAUUU------GAUUUGAUGUAU-- d.16.e.Nosema.sp.05.fasta AAGACGAACAGCUCAGU--AACUCUUAUUU------GAUUUGAUGUAU-- d.16.e.Endoreticulatus.sp.fast AAGACGAACAGCUCAGU--AACUCUUAUUU------GAUUUGAUGUAU-- d.16.e.Nosema.sp.02.fasta AAGACGAACAGCUCAGU--AACUCUUAUUU------GAUUUGAUGUAU-- d.16.e.N.spodopterae.fasta AAGACGAACAGCUCAGU--AACUCUUAUUU------GAUUUGAUGUAU-- d.16.e.N.trichoplusiae.fasta AAGACGAACAGCUCAGU--AACUCUUAUUU------GAUUUGAUGUAU-- d.16.e.N.bombycis.27.fasta AAGACGAACAGCUCAGU--AACUCUUAUUU------GAUUUGAUGUAU-- d.16.e.N.bombycis.02.fasta AAGACGAACAGCUCAGU--AACUCUUAUUU------GAUUUGAUGUAU-- d.16.e.V.imperfecta.fasta AAGACGAACAGCUCAGU--AACUCUUAUUU------GAUUUGAUGUAU-- d.16.e.N.furnacalis.fasta AAGACGAACAGCUCAGU--AACUCUUAUUU------CAUUUGAUGUAU-- d.16.e.Microsporidium57864.fas AAAAUGGACUGCUCAGU--AAUACUCACUU------UAUUUUAUGUAC-- d.16.e.Vairimorpha.sp.C21.fast AAAAUGGACUGCUCAGU--AAUACUUACUU------UAUUUAAUGUAC-- d.16.e.N.oulemae.fasta AAAAUGGACUGCUCAGU--AAUACUCACUU------UAUUUGAUGUAC-- d.16.e.N.necatrix.fasta AAAAUGGACUGCUCAGU--AAUACUCACUU------UAUUUAAUGUAUU- d.16.e.V.necatrix.fasta AAAAUGGACUGCUCAGU--AAUACUCACUU------UAUUUAAUGUAUU- d.16.e.N.apis.fasta AAGAUGGACUGCUCAGU--AAUACUCACUU------UAUUUGAUGUAC-- d.16.e.O.occidentalis.fasta AAGAUGGACUGCUCAGU--AAUACUCACUU------UAUUUUAUGUAU-- d.16.e.Microsporidium.sp.DP119 ACGGCGAACGGCUCAGU--AAUAUUGCGUU------AAUCUGGUCUAA-- d.16.e.V.corneae.fasta GGGACGAAUAGCUCAGU--AAAACUGCGAU------GAUUUAGUCUGG-- d.16.e.A.michaelis.fasta AUGGCUCAGUAUCGAGU--AUAGCUUUGCUCUCCAAGAUGUGAUACUUUC d.16.e.T.contejeani.fasta ACAGCGAAAAGCUCAGU--AAUACAAUCAU------UAUUUGGUCUACA- d.16.e.E.hellem.fasta UUGACGGACGGCUCAGU--GAUAGUACGAU------GAUUUGAUUGGGU- d.16.e.Encephalitozoon.sp.fast UUGACGGACGGCUCAGU--GAUAGUACGAU------GAUUUGGUUGGCG- d.16.e.E.cuniculi.fasta UUAGCGGACGGCUCAGU--GAUAGCACGAU------GAUUUGUUUGCGG- d.16.e.O.colligata.fasta ACUGCGGACGGCUCAGU--AAGACUACGAU------GAAAUGAUCUGCG- d.16.e.E.salmonis.fasta ACGGCGAACGGCUCAGU--AAUGUUGCGGU------GAUCUGCUCUGGU- d.16.e.N.salmonis.fasta ACGGCGAACGGCUCAGU--AAUGUUGCGGU------GAUCUGCUCUGGU- d.16.e.Enterocytozoonidae.sp.f ACGGCGAACGGCUCAGU--AAUGUUGCGAU------UAUCUGCUCUGGU- d.16.e.E.bieneusi.fasta ACGGCGAACGGCUCAGU--AAUGUUGCGGU------AAUUUGGUCUCUG- d.16.e.B.algerae.fasta GAGGCGGAUAGCUCAGU--AAUACAGUUAC------AACAUAAGCUGCG- d.16.e.T.solenopsae.fasta GUGGCGGAUAGCUCAGU--AAUACAGUUAU------AACAUAAUCUACA- d.16.e.V.acridophagus.fasta GUGGCGGACAGCUCAGU--AAUACAGUUAU------AAUAUACUCUCUA- d.16.e.Bacillidium.sp.fasta GCAACAGACAGCUCAGU--AAUAGAGUUAA------AAUUAACUCGUGAA d.16.e.P.cristatellae.fasta GCGGCGGACAGCUCAGU--AAUACAGUUAU------UAUUUACUCGUAGU d.16.e.Pleistophora.sp.fasta AGGACGAACAGCUCAGU--AAAACUGCGAU------GAUUCAGUCUGUC- d.16.e.O.operophterae.fasta ACGGCGAACGGCUCAGU--AAUACUGCGAU------GAUCUGCUCCGCG- d.16.e.F.magnivora.fasta ACUGCGAACGGCUCAGU--AGAACGGUGAU------UAUUUAAUCGUGU- d.16.e.G.atherinae.fasta GCGGCGCAAGGCUCAGU--AACGGGCGAGU-------AUUUGAUCUCCU- d.16.e.Ichthyosporidium.sp.fas GCGGCACA-GGCUCAGU--AACGGGCGAAU-------AUUUAAUCUCCU- d.16.e.L.acerinae.fasta GCGGCGCAAGGCUCAGU--AACGGGCGGAC-------AUUUGAUCUUCU- d.16.e.H.anguillarum.fasta GCGGCGGAAGGCUCAGU--AACGGGCGUCU-------AUUUGAUCUUCU- d.16.e.P.mirandellae.fasta GCGGCAUAAGGCUCAGU--AACGGGCGUCU-------AUUUGAUCUCCU- d.16.e.T.hominis.fasta GCGGCGCAAGGCUCAGU--AACGGGCGACUG------AUUUGAUCUCCC- d.16.e.V.culicis.fasta GCGGCGCAAGGCUCAGU--AACGGGCGACUG------AUUUGAUCUCCC- d.16.e.P.hippoglossoideos.fast GCGGCGCAAGGCUCAGU--AACGGGCGUCUG------AUUUGAUCUCUC- d.16.e.Microgemma.sp.fasta GCGGCGGAAGGCUCAGU--AACGGGCGAGUA------UUU-AAUCUCCA- d.16.e.S.lophii.fasta GCGGCGGAAGGCUCAGU--AACGGGCGAGUA------UUUUAAUCUCUA- d.16.e.Pleistophora.sp.LS.fast CCGGAGAAAGGCUCAGU--AACGGGUAUCUA------UUU-GCUCUCGG- d.16.e.D.gammarellum.fasta GCGGCGAAAGGCUCAGU--AACGGGCGAUUU------AUUUAUUCUUCU- d.16.e.M.prosopium.fasta GCUGCGGAAGGCUCAGU--AACGGGCGUCUA------AUUUGAUCUCUU- d.16.e.A.scoticae.fasta GCGGCGGACGGCUCAGU--AGGACGGCGAUA--AUUCACCCGCGGCAGAA d.16.e.P.whitei.fasta GCGGCGGACAGCUCAGU--AGGACAGCGAUA--AUCCACCCGCGGCACAG a.16.c.C.coccineum.fasta -------------------------------------------------- a.16.c.C.ruber.fasta -------------------------------------------------- d.16.c.N.tabacum.fasta -------------------------------------------------- d.16.c.S.oleracea.fasta -------------------------------------------------- d.16.c.Z.mays.fasta -------------------------------------------------- d.16.c.M.polymorpha.fasta -------------------------------------------------- d.16.c.R.communis.fasta -------------------------------------------------- d.16.c.C.vulgaris.fasta -------------------------------------------------- d.16.c.P.wickerhamii.fasta -------------------------------------------------- d.16.c.P.minor.fasta -------------------------------------------------- d.16.c.N.olivacea.fasta -------------------------------------------------- d.16.c.P.parkeae.fasta -------------------------------------------------- d.16.c.C.reinhardtii.fasta -------------------------------------------------- b.16.m.A.castellanii.fasta -------------------------------------------------- d.16.c.P.thurberi.fasta -------------------------------------------------- b.16.m.C.crispus.fasta -------------------------------------------------- d.16.c.T.gondii.fasta -------------------------------------------------- b.16.m.N.crassa.fasta -------------------------------------------------- b.16.m.P.anserina.fasta -------------------------------------------------- b.16.m.P.chrysogenum.fasta -------------------------------------------------- b.16.m.E.nidulans.fasta -------------------------------------------------- b.16.m.S.cerevisiae.fasta -------------------------------------------------- b.16.m.W.saturnus.m.fasta -------------------------------------------------- b.16.m.P.minor.fasta -------------------------------------------------- d.16.c.P.falciparum.fasta -------------------------------------------------- d.16.c.B.bovis.fasta -------------------------------------------------- b.16.m.T.pyriformis.fasta -------------------------------------------------- d.16.m.S.sinuspaulianus.fasta -------------------------------------------------- b.16.m.P.tetraurelia.fasta -------------------------------------------------- b.16.m.D.discoideum.fasta -------------------------------------------------- d.16.m.P.polycephalum.fasta -------------------------------------------------- b.16.m.P.littoralis.fasta -------------------------------------------------- b.16.m.P.wickerhamii.fasta -------------------------------------------------- d.16.c.H.africana.fasta -------------------------------------------------- d.16.c.C.fragile.fasta -------------------------------------------------- d.16.c.C.sertularioides.fasta -------------------------------------------------- d.16.c.C.humicola.fasta -------------------------------------------------- d.16.c.P.uvella.fasta -------------------------------------------------- a.16.c.G.nostochinearum.fasta -------------------------------------------------- a.16.c.G.wittrockiana.fasta -------------------------------------------------- d.16.c.C.paradoxa.fasta -------------------------------------------------- d.16.y.C.paradoxa.fasta -------------------------------------------------- d.16.c.Cryptomonas.sp.fasta -------------------------------------------------- d.16.c.P.palmata.fasta -------------------------------------------------- d.16.c.H.akashiwo.fasta -------------------------------------------------- d.16.c.S.pseudocostatum.fasta -------------------------------------------------- d.16.c.P.littoralis.fasta -------------------------------------------------- d.16.c.C.caldarium.fasta -------------------------------------------------- a.16.c.E.huxleyi.fasta -------------------------------------------------- d.16.c.E.gracilis.fasta -------------------------------------------------- d.16.b.Anabaena.sp.fasta -------------------------------------------------- d.16.b.Chlorogloeopsis.PCC7518 -------------------------------------------------- d.16.b.Synechococcus.sp.fasta -------------------------------------------------- d.16.b.Synechocystis.PCC6803.G -------------------------------------------------- d.16.b.O.agardhii.fasta -------------------------------------------------- d.16.b.Pleurocapsa.7516.fasta -------------------------------------------------- d.16.b.M.aeruginosa.fasta -------------------------------------------------- b.16.m.C.reinhardtii.fasta -------------------------------------------------- d.16.m.C.eugametos.fasta -------------------------------------------------- b.16.m.M.senile.fasta -------------------------------------------------- d.16.b.S.pneumoniae.fasta -------------------------------------------------- d.16.b.S.pyogenes.fasta -------------------------------------------------- d.16.b.B.anthracis.fasta -------------------------------------------------- d.16.b.B.cereus.1.fasta -------------------------------------------------- d.16.b.E.faecalis.fasta -------------------------------------------------- d.16.b.E.faecium2.fasta -------------------------------------------------- d.16.b.L.monocytogenes.fasta -------------------------------------------------- d.16.b.B.subtilis.fasta -------------------------------------------------- d.16.b.B.subtilis.GEN.fasta -------------------------------------------------- d.16.b.B.halodurans.fasta -------------------------------------------------- d.16.b.S.aureus.fasta -------------------------------------------------- d.16.b.S.aureus.GEN.fasta -------------------------------------------------- d.16.b.L.lactis.GEN.fasta -------------------------------------------------- d.16.b.S.pyogenes.GEN.fasta -------------------------------------------------- d.16.b.L.acidophilus.fasta -------------------------------------------------- d.16.b.M.capricolum.fasta -------------------------------------------------- d.16.b.M.mycoides.fasta -------------------------------------------------- d.16.b.E.rhusiopathiae.fasta -------------------------------------------------- d.16.b.C.innocuum.fasta -------------------------------------------------- d.16.b.M.genitalium.fasta -------------------------------------------------- d.16.b.M.pneumoniae.GEN.fasta -------------------------------------------------- d.16.b.M.pneumoniae.fasta -------------------------------------------------- d.16.b.M.gallisepticum.fasta -------------------------------------------------- d.16.b.U.urealyticum.fasta -------------------------------------------------- d.16.b.U.urealyticum.GEN.fasta -------------------------------------------------- d.16.b.M.hyopneumoniae.fasta -------------------------------------------------- d.16.b.F.necrophorum.fasta -------------------------------------------------- d.16.b.F.nucleatum.fasta -------------------------------------------------- d.16.b.S.moniliformis.fasta -------------------------------------------------- d.16.b.C.botulinum.F.fasta -------------------------------------------------- d.16.b.C.tetani.fasta -------------------------------------------------- d.16.b.C.perfringens.fasta -------------------------------------------------- d.16.b.C.difficile.fasta -------------------------------------------------- d.16.b.E.brachy.fasta -------------------------------------------------- d.16.b.Epulopiscium.sp.fasta -------------------------------------------------- d.16.b.H.chlorum.fasta -------------------------------------------------- b.16.m.G.max.fasta -------------------------------------------------- b.16.m.O.berteriana.fasta -------------------------------------------------- b.16.m.S.cereale.fasta -------------------------------------------------- b.16.m.T.aestivum.fasta -------------------------------------------------- d.16.m.Z.mays.fasta -------------------------------------------------- b.16.m.M.polymorpha.fasta -------------------------------------------------- b.16.m.N.olivacea.fasta -------------------------------------------------- d.16.b.G.liquefaciens.fasta -------------------------------------------------- d.16.b.B.japonicum.fasta -------------------------------------------------- d.16.b.R.acidophilus.fasta -------------------------------------------------- d.16.b.A.caulinodans.fasta -------------------------------------------------- d.16.b.B.quintana.fasta -------------------------------------------------- d.16.b.M.loti.fasta -------------------------------------------------- d.16.b.A.tumefaciens.fasta -------------------------------------------------- d.16.b.B.bacilliformis.fasta -------------------------------------------------- d.16.b.B.henselae.fasta -------------------------------------------------- d.16.b.B.melitensis.fasta -------------------------------------------------- d.16.b.R.orientis.fasta -------------------------------------------------- d.16.b.Methylobacterium.sp.fas -------------------------------------------------- d.16.b.R.bellii.fasta -------------------------------------------------- d.16.b.R.felis.URRWXCal2.fasta -------------------------------------------------- d.16.b.R.prowazekii.fasta -------------------------------------------------- d.16.b.R.prowazekii.GEN.fasta -------------------------------------------------- d.16.b.R.rickettsii.fasta -------------------------------------------------- d.16.b.A.calcoaceticus.fasta -------------------------------------------------- d.16.b.P.pacificensis.fasta -------------------------------------------------- d.16.b.C.marismortui.fasta -------------------------------------------------- d.16.b.H.halodenitrificans.fas -------------------------------------------------- d.16.b.P.aeruginosa.fasta -------------------------------------------------- d.16.b.P.aeruginosa.GEN.fasta -------------------------------------------------- d.16.b.Pseudomonas.sp.fasta -------------------------------------------------- d.16.b.P.putida.fasta -------------------------------------------------- d.16.b.C.burnetii.fasta -------------------------------------------------- d.16.b.M.capsulatus.fasta -------------------------------------------------- d.16.b.L.pneumophila.1.fasta -------------------------------------------------- d.16.b.L.pneumophila.2.fasta -------------------------------------------------- d.16.b.A.vinosum.fasta -------------------------------------------------- d.16.b.Beggiatoa.sp.fasta -------------------------------------------------- d.16.b.A.hydrophila.fasta -------------------------------------------------- d.16.b.S.putrefaciens.fasta -------------------------------------------------- d.16.b.C.freundii.fasta -------------------------------------------------- d.16.b.S.dysenteriae.1.fasta -------------------------------------------------- d.16.b.K.pneumoniae.fasta -------------------------------------------------- d.16.b.P.shigelloides.fasta -------------------------------------------------- d.16.b.Y.pestis.fasta -------------------------------------------------- d.16.b.Y.pseudotuberculosis.fa -------------------------------------------------- d.16.b.S.dysenteriae.2.fasta -------------------------------------------------- d.16.b.E.coli.0157G.GEN.fasta -------------------------------------------------- d.16.b.E.coli.EDL.GEN.fasta -------------------------------------------------- d.16.b.E.coli.fasta -------------------------------------------------- d.16.b.E.coli.K12.GEN.fasta -------------------------------------------------- h.16.b.E.coli.hlxnum.fasta -------------------------------------------------- m.16.b.E.coli.mhg.fasta -------------------------------------------------- s.16.b.E.coli.schem.fasta -------------------------------------------------- d.16.b.S.typhimurium.fasta -------------------------------------------------- d.16.b.S.marcescens.fasta -------------------------------------------------- d.16.b.E.tarda.fasta -------------------------------------------------- d.16.b.P.vulgaris.fasta -------------------------------------------------- d.16.b.V.cholerae4.fasta -------------------------------------------------- d.16.b.V.cholerae5.fasta -------------------------------------------------- d.16.b.V.cholerae2.fasta -------------------------------------------------- d.16.b.V.cholerae6.fasta -------------------------------------------------- d.16.b.V.cholerae.fasta -------------------------------------------------- d.16.b.V.cholerae.GEN.fasta -------------------------------------------------- d.16.b.V.parahaemolyticus.fast -------------------------------------------------- d.16.b.H.influenzae7.fasta -------------------------------------------------- d.16.b.H.influenzae8.fasta -------------------------------------------------- d.16.b.H.influenzae6.fasta -------------------------------------------------- d.16.b.H.influenz.fasta -------------------------------------------------- d.16.b.H.influenzae.fasta -------------------------------------------------- d.16.b.P.multocida.fasta -------------------------------------------------- d.16.b.P.multocida.GEN.fasta -------------------------------------------------- d.16.b.X.albilineans.fasta -------------------------------------------------- d.16.b.X.campestris.fasta -------------------------------------------------- d.16.b.X.fastidiosa.GEN.fasta -------------------------------------------------- d.16.b.D.nodosus.fasta -------------------------------------------------- d.16.b.F.tularensis.fasta -------------------------------------------------- d.16.b.B.parapertussis.fasta -------------------------------------------------- d.16.b.B.pertussis.fasta -------------------------------------------------- d.16.b.B.bronchiseptica2.fasta -------------------------------------------------- d.16.b.u.proteobacterium.fasta -------------------------------------------------- d.16.b.B.mallei.fasta -------------------------------------------------- d.16.b.Burkholderia.sp.fasta -------------------------------------------------- d.16.b.N.meningitidis.MD58.GEN -------------------------------------------------- d.16.b.N.meningitidis.Z2491.GE -------------------------------------------------- d.16.b.N.gonorrhoeae.fasta -------------------------------------------------- d.16.b.C.testosteroni.fasta -------------------------------------------------- d.16.b.D.desulfuricans.fasta -------------------------------------------------- d.16.b.M.xanthus.fasta -------------------------------------------------- d.16.b.D.thermophilus.fasta -------------------------------------------------- d.16.b.B.burgdorferi.fasta -------------------------------------------------- d.16.b.B.burgdorferi.GEN.fasta -------------------------------------------------- d.16.b.B.hermsii.fasta -------------------------------------------------- d.16.b.S.aurantia.fasta -------------------------------------------------- d.16.b.T.pallidum.A.fasta -------------------------------------------------- d.16.b.L.illini.fasta -------------------------------------------------- d.16.b.L.interrogans.fasta -------------------------------------------------- d.16.b.C.trachomatis.GEN.fasta -------------------------------------------------- d.16.b.C.trachomatis.L2.fasta -------------------------------------------------- d.16.b.C.muridarum.fasta -------------------------------------------------- d.16.b.C.pneumoniae.AR39.fasta -------------------------------------------------- d.16.b.C.pneumoniae.fasta -------------------------------------------------- d.16.b.C.pneumoniae.J138.fasta -------------------------------------------------- d.16.b.C.pneumoniae.CWL029.fas -------------------------------------------------- d.16.b.C.psittaci.fasta -------------------------------------------------- d.16.b.D.radiodurans.1.fasta -------------------------------------------------- d.16.b.D.radiodurans.GEN.fasta -------------------------------------------------- d.16.b.B.fragilis.fasta -------------------------------------------------- d.16.b.P.gingivalis.fasta -------------------------------------------------- d.16.b.C.vibrioforme.fasta -------------------------------------------------- d.16.b.C.jejuni.fasta -------------------------------------------------- d.16.b.C.jejuni.GEN.fasta -------------------------------------------------- d.16.b.C.sputorum.fasta -------------------------------------------------- d.16.b.H.pylori.26695.GEN.fast -------------------------------------------------- d.16.b.H.pylori.J99.GEN.fasta -------------------------------------------------- d.16.b.H.pylori2.fasta -------------------------------------------------- d.16.b.A.capsulatum.fasta -------------------------------------------------- d.16.b.H.foetida.fasta -------------------------------------------------- d.16.b.A.globiformis.fasta -------------------------------------------------- d.16.b.M.luteus.fasta -------------------------------------------------- d.16.b.Frankia.sp.fasta -------------------------------------------------- d.16.b.S.bottropensis.fasta -------------------------------------------------- d.16.b.S.scabiei.fasta -------------------------------------------------- d.16.b.S.neyagawaensis.fasta -------------------------------------------------- d.16.b.S.diastatochromogenes.f -------------------------------------------------- d.16.b.Streptomyces.sp.fasta -------------------------------------------------- d.16.b.S.acidiscabies.fasta -------------------------------------------------- d.16.b.S.griseus.fasta -------------------------------------------------- d.16.b.S.ornatus.fasta -------------------------------------------------- d.16.b.S.subrutilus.fasta -------------------------------------------------- d.16.b.S.bikiniensis.fasta -------------------------------------------------- d.16.b.S.galbus.fasta -------------------------------------------------- d.16.b.S.hygroscopicus.fasta -------------------------------------------------- d.16.b.S.lincolnensis.fasta -------------------------------------------------- d.16.b.S.coelicolor.fasta -------------------------------------------------- d.16.b.S.tendae.fasta -------------------------------------------------- d.16.b.S.ambofaciens.fasta -------------------------------------------------- d.16.b.S.eurythermus.fasta -------------------------------------------------- d.16.b.S.nodosus.fasta -------------------------------------------------- d.16.b.S.sampsonii.fasta -------------------------------------------------- d.16.b.S.glaucescens.fasta -------------------------------------------------- d.16.b.S.pseudogriseolus.fasta -------------------------------------------------- d.16.b.S.caelestis.fasta -------------------------------------------------- d.16.b.S.bluensis.fasta -------------------------------------------------- d.16.b.S.espinosus.fasta -------------------------------------------------- d.16.b.S.mashuensis.fasta -------------------------------------------------- d.16.b.S.rimosus.fasta -------------------------------------------------- d.16.b.S.limosus.fasta -------------------------------------------------- d.16.b.S.odorifer.fasta -------------------------------------------------- d.16.b.S.felleus.fasta -------------------------------------------------- d.16.b.S.albidoflavus.fasta -------------------------------------------------- d.16.b.S.gougerotii.fasta -------------------------------------------------- d.16.b.S.rutgersensis.fasta -------------------------------------------------- d.16.b.S.intermedius.fasta -------------------------------------------------- d.16.b.S.thermodiastaticus.fas -------------------------------------------------- d.16.b.S.thermoviolaceus.fasta -------------------------------------------------- d.16.b.S.thermovulgaris.1.fast -------------------------------------------------- d.16.b.S.thermovulgaris.2.fast -------------------------------------------------- d.16.b.S.macrosporus.fasta -------------------------------------------------- d.16.b.S.megasporus.fasta -------------------------------------------------- d.16.b.S.thermolineatus.fasta -------------------------------------------------- d.16.b.M.tuberculosis.2.fasta -------------------------------------------------- d.16.b.M.tuberculosis.3.fasta -------------------------------------------------- d.16.b.M.avium.fasta -------------------------------------------------- d.16.b.M.leprae.fasta -------------------------------------------------- d.16.b.M.leprae.GEN.fasta -------------------------------------------------- d.16.b.M.tuberculosis.CDC1551. -------------------------------------------------- d.16.b.M.tuberculosis.GEN.fast -------------------------------------------------- d.16.b.N.asteroides.fasta -------------------------------------------------- d.16.b.R.erythropolis.fasta -------------------------------------------------- d.16.b.C.diphtheriae.fasta -------------------------------------------------- d.16.b.A.israelii.fasta -------------------------------------------------- d.16.b.B.hyodysenteriae.fasta -------------------------------------------------- d.16.b.G.subterranea.fasta -------------------------------------------------- d.16.b.P.miotherma.fasta -------------------------------------------------- d.16.b.B.andersonii.fasta -------------------------------------------------- d.16.b.H.aurantiacus.fasta -------------------------------------------------- d.16.b.Leptospirillium.sp.fast -------------------------------------------------- d.16.b.A.aeolicus.fasta -------------------------------------------------- d.16.b.A.pyrophilus.fasta -------------------------------------------------- d.16.b.T.maritima.fasta -------------------------------------------------- d.16.b.T.maritima.GEN.fasta -------------------------------------------------- n.16.b.T.thermophilus.2.num.fa -------------------------------------------------- s.16.b.T.thermophilus.2.schem. -------------------------------------------------- d.16.b.T.thermophilus.2.fasta -------------------------------------------------- s.16.b.T.thermophilus.1.schem. -------------------------------------------------- n.16.b.T.thermophilus.1.num.fa -------------------------------------------------- d.16.b.T.thermophilus.1.fasta -------------------------------------------------- d.16.b.T.aquaticus.fasta -------------------------------------------------- d.16.b.T.roseum.fasta -------------------------------------------------- d.16.b.P.marina.fasta -------------------------------------------------- d.16.b.P.staleyi.fasta -------------------------------------------------- d.16.b.P.Schlesner.fasta -------------------------------------------------- d.16.b.G.obscuriglobus.1.fasta -------------------------------------------------- d.16.b.I.pallida.fasta -------------------------------------------------- d.16.a.P.abyssi.fasta -------------------------------------------------- d.16.a.P.horikoshii.fasta -------------------------------------------------- d.16.a.P.furiosus.fasta -------------------------------------------------- d.16.a.T.celer.fasta -------------------------------------------------- d.16.a.A.fulgidus.fasta -------------------------------------------------- d.16.a.N.equitans.fasta -------------------------------------------------- d.16.a.A.pernix.K1.fasta -------------------------------------------------- d.16.a.P.occultum.fasta -------------------------------------------------- d.16.a.T.tenax.fasta -------------------------------------------------- d.16.a.S.acidocaldarius.fasta -------------------------------------------------- d.16.a.S.solfataricus.fasta -------------------------------------------------- d.16.a.S.solfataricus.2.fasta -------------------------------------------------- d.16.a.M.thermautotrophicus.1. -------------------------------------------------- d.16.a.M.thermautotrophicus.2. -------------------------------------------------- d.16.a.M.formicicum.fasta -------------------------------------------------- d.16.a.M.vannielii.fasta -------------------------------------------------- d.16.a.H.marismortui.rrnA.fast -------------------------------------------------- d.16.a.H.marismortui.rrnB.fast -------------------------------------------------- d.16.a.Halobacterium.sp.fasta -------------------------------------------------- d.16.a.N.bangense.fasta -------------------------------------------------- d.16.a.N.innermongoliae.fasta -------------------------------------------------- d.16.a.H.volcanii.fasta -------------------------------------------------- d.16.a.M.hungatei.fasta -------------------------------------------------- d.16.a.P.torridus.fasta -------------------------------------------------- d.16.a.T.acidophilum.fasta -------------------------------------------------- a.16.e.G.ardeae.fasta GG---------------CUAGCCGGA-CACCGCU-GGCAAC-CCAGCGAC d.16.e.G.intestinalis.fasta UG---------------CUAGCCGGA-CACCGCU-GGCAAC-CCGGCGCC a.16.e.G.muris.fasta GG---------------CUAGACGGA-UACCGCU-GGCAAC-CCAGCGCC d.16.e.A.bracteata.fasta -----------------CGGGAGGGA-UAACCAC-GGGAAA-CUGUGGCU d.16.e.Glomus.sp.W3349.fasta --UUAC------------UACUUGGA-UAACCGU-GGUAAUUCUAGAGCU d.16.e.S.cerradensis.fasta A-UUAC------------UACUUGGA-UAACCGU-GGUAAUUCUAGAGCU a.16.e.G.intraradices.fasta --UUAC------------UACUUGGA-UAACCGU-GGUAAUUCUAGAGCU d.16.e.S.culisetae.fasta UUUUAC------------UACUUGGA-UAACCGU-GGUAAUUCUAGAGCU a.16.e.P.balamuthi.fasta --UUYA------------U-URUGGC-CUCUCGG-GGUUAUUUURAAUGU d.16.e.A.flavus.fasta --UUAC------------UACAUGGA-UACCUGU-GGUAAUUCUAGAGCU d.16.e.T.caries.fasta --UUGC------------UACAUGGA-UAACUGU-GGUAAAUCUAGAGCU d.16.e.M.circinelloides.fasta CUUUAC------------UACUUGGA-UAACCGU-GGUAAUUCUAGAGCU d.16.e.M.racemosus.fasta CUUUAC------------UACUUGGA-UAACCGU-GGUAAUUCUAGAGCU d.16.e.R.oryzae.fasta CUUUAC------------UACUUGGA-UAACCGU-GGUAAUUCUAGAGCU a.16.e.M.edulis.fasta ---CAAU---------CCUACUUGGA-UAACUGU-GGUAAUUCUAGAGCU a.16.e.P.magellanicus.fasta ---CGAU---------CCUACUUGGA-UAACUGU-GGCAAUUCUAGAGCU b.16.e.E.granulosus.fasta ---GCCC---------GUUAGAUGGA-UAACUGU-AAUAACUCUAGAGCU d.16.e.D.melanogaster.fasta ---AACA---------GUUACUUGGA-UAACUGU-GGUAAUUCUAGAGCU b.16.e.C.koreana.fasta ---ACUU---------ACUACUUGGA-UAACUGU-GGUAAUUCUAGAGCU b.16.e.A.australis.fasta ---CUUU---------CCUACUUGGA-UAACUGU-GGUAAUUCUAGAGCU b.16.e.O.utahensis.fasta ---ACCC---------GUUACUUGGA-UAACUGU-GGUAAUUCUAGAGCU b.16.e.A.salina.fasta --UAUAU---------CCUACUUGGA-UAACUGU-GGUAAUUCUAGAGCU d.16.e.M.musculus.fasta CUCCUCU---------CCUACUUGGA-UAACUGU-GGUAAUUCUAGAGCU d.16.e.R.norvegicus.fasta CUCCUCU---------CCUACUUGGA-UAACUGU-GGUAAUUCUAGAGCU d.16.e.H.sapiens.fasta CUCCUCU---------CCUACUUGGA-UAACUGU-GGUAAUUCUAGAGCU d.16.e.O.cuniculus.fasta CUCCUCU---------CCUACUUGGA-UAACUGU-GGUAAUUCUAGAGCU d.16.e.X.borealis.fasta --CAUCU---------GUUACUUGGA-UAACUGU-GGUAAUUCUAGAGCU d.16.e.X.laevis.fasta --CAUCU---------GUUACUUGGA-UAACUGU-GGUAAUUCUAGAGCU d.16.e.A.castellanii.fasta UUUUGUCUUUUUUU-ACCUACUUGGA-UAACCGU-GGUAAUUCUAGAGCU d.16.e.B.mandrillaris.fasta UUUA-----UUUUU-AC-UACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.P.falciparum.A.fasta AUU----------------AUAAGGA-UAACUAC-GGAAAAGCUGUAGCU d.16.e.P.falciparum.S.fasta AAU----------------AUAAGGA-UAACUAC-GGAAAAUCUGUAGCU d.16.e.P.vivax.A.fasta UCU----------------AUAAGGA-UAACUAC-GGAAAAGCUGUAGCU d.16.e.P.vivax.O.fasta UCCC---------------AUAAGGA-UGAUUAC-GGAAAAGCUGUAGCC d.16.e.P.vivax.S.fasta UUCU---------------AUAAGGA-UAACUAC-GGAAAAGCUGUAGCU d.16.e.E.histolytica.fasta AAU----------------ACAAGGA-UAGCUUU-GUGAAUGAUAAAGAU d.16.e.I.hoferi.fasta UACU---------------ACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.Dermocystidium.sp.fasta UUAC--------------UACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.S.destruens.fasta UUAC--------------UACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.A.unguiculata.fasta UACU---------------ACAUGGA-UAACCGU-GGUAAUUCUAGAGCU d.16.e.D.grandis.fasta UACU---------------ACUUGGA-UAACCGU-GGUAAUUCUAGAGCU d.16.e.A.macrogynus.fasta CUUUUAC-----------UACUUGGA-UAACCGU-GGUAAUUCUAGAGCU d.16.e.B.emersonii.fasta CCAUUAC-----------UACUUGGA-UAACCGU-GGUAAUUCUAGAGCU d.16.e.C.albicans.fasta GAUAGUACCUU----ACUACUUGG-A-UAACCGU-GGUAAUUCUAGAGCU d.16.e.S.cerevisiae.fasta GAUAGUUCCUUU---ACUACAUGGUA-UAACUGU-GGUAAUUCUAGAGCU d.16.e.N.crassa.fasta GAUAGUACCUU----ACUACAUGG-A-UAACCGU-GGUAAUUCUAGAGCU d.16.e.P.anserina.fasta GAUAUUACCUU----ACUACAUGG-A-UAACCGU-GGUAAUUCUAGAGCU d.16.e.C.immitis.fasta GAUAGUACCUU----ACUACAUGG-A-UACCCGU-GGUAAUUCUAGAGCU d.16.e.L.major.fasta UGCGGUUUCCG----CAAAAUUGG-A-UAACUUG-GCGAAACGCCAAGCU d.16.e.T.cruzi.fasta UGCGGUCUCCG----CAAAAUUGG-A-UAACUUG-GCGAAACGCCAAGCU d.16.e.T.brucei.fasta UGCGGUCUCCG----CAUUACUGG-A-UAACUUG-GCGAAACGCCAAGCU d.16.e.P.carinii.fasta GAUAGUAUCUU----ACUACUUGG-A-UAACCGU-GGUAAUUCUAGAGCU d.16.e.C.neoformans.fasta UUGC--------------UACAUGGA-UAACUGU-GGUAAUUCUAGAGCU d.16.e.Fungus.sp.QPX.fasta UUGC--------------UACAUGGA-UAACUGU-GGUAAUUCUAGAGCU d.16.e.U.maydis.fasta UUGC--------------UACAUGGA-UAACUGU-GGUAAUUCUAGAGCU d.16.e.M.leidyi.fasta CUUACU-------------ACAUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.T.cystophora.fasta CUUAC----------------AUGGA-UAACUGU-GGUAAUUCUAGAGCU d.16.e.M.prolifera.fasta CUUGCU-------------ACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.P.haeckeli.fasta CCUACUA--------------CUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.E.rotunda.fasta UUAC--------------UACAUGGA-UAACCGU-GGUAAUUCUAGAGCU d.16.e.P.chromatophora.fasta UUAC--------------UACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.A.majus.fasta -CUGCU-------------ACUCGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.S.indicum.fasta -CUGCU-------------ACUCGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.D.grandiflora.fasta -CUGCU-------------ACUCGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.Pla.lanceolata.fasta -CUGCU-------------ACUCGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.N.tabacum.fasta -CUACU-------------ACUCGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.A.thaliana.fasta -CUACU-------------ACUCGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.S.alba.fasta -CUACU-------------ACUCGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.S.tuberosum.fasta -CUACU-------------ACUCGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.F.x.ananassa.fasta -CUACU-------------ACUCGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.G.max.fasta -CUACU-------------ACUCGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.O.sativa.fasta -GUGCU-------------ACUCGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.Z.mays.fasta -GUGCU-------------ACUCGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.A.verticilliflorum.fast -UUUCU-------------ACUCGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.G.spirotaenia.fasta AUUACU-------------ACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.Staurastrum.sp.M752.fas -CUACU-------------ACUCGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.C.paradoxa.fasta CUUACU-------------ACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.G.nostochinearum.fasta CUUACU-------------ACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.G.wittrockiana.fasta CUC-CU-------------ACUUGGA-UACCUGU-AGUAAUUCUAGAGCU d.16.e.C.luteoviridis.fasta CUUGCU-------------ACUCGGA-UAGCCGU-AGUAACA-UAGAGCU d.16.e.O.longa.fasta ---------------AUUUACAUGGA-UAACCGU-GGUAAUUCUAGAGCU d.16.e.P.weissei.fasta ---------------AAUUACAUGGA-UAACCGU-GGUAAUUCUAGAGCU d.16.e.C.citrina.fasta ---------------AAUUACAUGGA-UAACCGU-GGUAAUUCUAGAGCU d.16.e.G.steinii.fasta ---------------AUUUACAUGGA-UAACCGU-GGUAAUUCUAGAGCU d.16.e.Ple.lanceolata.fasta ---------------AUUUACAUGGA-UAACCGU-GGUAAUUCUAGAGCU d.16.e.O.quadricornutus.fasta ---------------AUUUACAUGGA-UAACCGU-GGUAAUUCUAGAGCU d.16.e.S.lemnae.fasta ---------------AUUUACAUGGA-UAACCGU-GGUAAUUCUAGAGCU d.16.e.S.mytilus.fasta ---------------AUUUACAUGGA-UAACCGU-GGUAAUUCUAGAGCU d.16.e.E.mobilis.fasta ---------------AUUUACAUGGA-UAACCGU-GGUAAUUCUAGAGCU d.16.e.O.granulifera.1.fasta ---------------AUUUACAUGGA-UAACCGU-GGUAAUUCUAGAGCU d.16.e.O.granulifera.2.fasta ---------------ACUUACAUGGA-UAACCGU-GGUAAUUCUAGAGCU d.16.e.U.gallina.fasta ---------------AUUUACAUGGA-UAACCGU-GGUAAUUCUAGAGCU d.16.e.U.pisces.fasta ---------------AAUUACAUGGA-UAACCGU-GGUAAUUCUAGAGCU d.16.e.P.lepisma.fasta ---------------AAUUACAUGGA-UAACCGU-GGUAAUUCUAGAGCU d.16.e.U.grandis.fasta ---------------AUUUACAUGGA-UAACCGU-GGUAAUUCUAGAGCU d.16.e.B.coli.fasta ----------------AUUAAAUGGA-UAACUGU-AGAAAAACUAGAGCU d.16.e.E.aediculatus.fasta GCUAAUAUUCUUAUUAGUUAAAUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.T.thermophila.fasta A--------------GAUUACAUGGA-UAACCGA-GCUAAUUGUUGGGCU d.16.e.Bangia.sp.NWT.fasta CA---------------CUACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.Bangia.sp.VIS7.fasta CUUU-------------CUACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.E.carnea.fasta CCAU-------------UUACUUGGAAUAACCGU-AGUAAUUCUAGAGCU d.16.e.R.parvula.fasta CC---------------UUACUCGGA-UACCCCU-AGUAAUUCUAGAGCU d.16.e.C.coeruleus.fasta CCUU-------------UUACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.P.aerugineum.1.fasta CCUU-------------UUACUUGGA-UACCCCU-AGUAAUUCUAGAGCU d.16.e.R.maculata.fasta CUGA-------------UUACUCGGA-UAACCCA-AGUAAUUCUUGAGCU d.16.e.A.ambigua.fasta CUUACU-------------ACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.A.baicalensis.fasta CUUACU-------------ACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.S.nipponica.fasta CUUACU-------------ACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.C.radiatus.fasta UUUGCU-------------ACUUGGA-UAACUGU-AGUAAUUCUAGAGCU d.16.e.C.criophilum.fasta CCUACU-------------ACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.A.capitellata.fasta CUCACU-------------ACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.S.pupula.fasta CUUACU-------------ACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.T.antarctica.fasta CUUACU-------------ACUUGGA-UACCCGU-AGUAAUUCUAGAGCU d.16.e.E.triangulatum.fasta CUUACU-------------ACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.A.bongranii.fasta CUUACU-------------ACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.Pseudogomphonema.sp.fas CUUACU-------------ACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.D.tenue.fasta CUUACU-------------ACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.G.marina.fasta CUUACU-------------ACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.Thalassionema.sp.fasta CUUACU-------------AAUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.R.belgicae.fasta CUUACU-------------ACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.Undatella.sp.fasta CUUACU-------------ACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.C.belgica.fasta CUUACU-------------ACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.O.sinensis.fasta UUUACU-------------ACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.D.brightwellii.fasta CUUACU-------------ACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.L.undulatum.fasta CUUACU-------------ACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.T.eccentrica.fasta CUUACU-------------ACUUGGA-UACCCGU-AGUAAUUCUAGAGCU d.16.e.T.pseudonana.fasta CUUACU-------------ACUUGGA-UACCUGU-AGUAAUUCUAGAGCU d.16.e.S.costatum.fasta CUCACU-------------ACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.P.laevis.fasta CUUACU-------------ACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.L.borealis.fasta CUUACU-------------ACUUGGA-UACCCGU-AGUAAUUCUAGAGCU d.16.e.P.pseudodenticulata.fas CUUACU-------------ACUUGGA-UACCCGU-AGUAAUUCUAGAGCU d.16.e.B.mediterranea.fasta CUUACU-------------ACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.B.pacifica.fasta CUUACU-------------ACAUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.L.minuta.fasta UCUACU-------------ACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.L.danicus.fasta CUUGCU-------------ACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.Chaetoceros.sp.fasta CUUACU-------------ACUUGGA-UACCCGU-AGUAAUUCUAGAGCU d.16.e.A.invadans.fasta CUUACU-------------ACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.L.giganteum.fasta CUUACU-------------ACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.M.varians.fasta UUUACU-------------ACUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.B.hominis.fasta UGUACU-------------ACUUGGA-UAACCGU-AGUAAUUCUAGGGCU d.16.e.P.marinus.fasta UUAC--------------UAUUUGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.T.gondii.fasta UUAC--------------UACAUGGA-UAACCGU-GGUAAUUCUAUGGCU d.16.e.A.fundyense.fasta UU-C--------------UAAAUGGA-UAUCUGU-GGRAAUUCUAUAGUU d.16.e.B.bigemina.fasta UU----------------UCCAUGGA-UAACCGU-GCUAAUUGUAGGGCU d.16.e.B.canis.fasta UU----------------UCCAUGGA-UAACCGU-GCUAAUUGUAGGGCU d.16.e.Babesia.sp.OKD.fasta UU----------------UCCAUGGA-UAACCGU-GCUAAUUGUAGGGCU d.16.e.B.microti.1.fasta UU----------------UACAUGGA-UAACCGU-GGUAAUUCUAGGGCU d.16.e.B.microti.2.fasta UU----------------UACAUGGA-UAACCGU-GGUAAUUCUAGGGCU d.16.e.B.microti.3.fasta UU----------------UACAUGGA-UAACCGU-GGUAAUUCUAGGGCU d.16.e.B.microti.4.fasta UU----------------UACAUGGA-UAACCGU-GGUAAUUCUAGGGCU d.16.e.B.microti.5.fasta UU----------------UACAUGGA-UAACCGU-GGUAAUUCUAGGGCU d.16.e.B.rodhaini.fasta AU----------------UACAUGGA-UAACCGU-GGUAAUUCUAGGGCU d.16.e.B.gibsoni.fasta UUC---------------UACAUGGA-UAACCGU-GCUAAUUGUAGGGCU d.16.e.B.bovis.fasta UU-U--------------GCUAUGGA-UAACCGC-GCUAAUUGUGUGGCU d.16.e.J.libera.fasta AUCU--GAUCC-------UACAUGGA-UAACCGU-AGUAACUCCAGAGCU d.16.e.R.americana.fasta AUCUCUGAUCC-------UACAUGGA-UACCUGUCGGUAACACCAGAGCU d.16.e.B.ostreae.fasta CUGU--------------UACACGGA-UAACCGU-AGUAAC-CUAGGGCU d.16.e.A.dasyae.fasta -UAC--------------UACUCGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.A.hermannii.fasta -UAC--------------UACUCGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.N.helminthoides.fasta -UAC--------------UACUCGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.B.gelatinosum.fasta -UAC--------------UACUCGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.N.tortuosa.fasta -UAC--------------UACUCGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.T.hispida.fasta GUAC--------------UACUCGGA-UAACCGU-AGUAAAUCUAGAGCU d.16.e.T.violacea.4.fasta GUAC--------------UACUCGGA-UAACCGU-AGUAAAUCUAGAGCU d.16.e.T.violacea.1.fasta UUAC--------------UACUCGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.T.violacea.2.fasta UUAC--------------UACUCGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.N.shawii.fasta -UAC--------------UACUCGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.B.investiens.fasta -UAC--------------UACUCGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.B.macrosporum.fasta -UAC--------------UACUCGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.A.plicata.fasta -UAC--------------UACUCGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.C.officinalis.fasta UUAC--------------UACUCGGA-UAAUCGU-AGUAAUUCUAGAGCU d.16.e.R.carriebowensis.fasta UUAC--------------UAUUCGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.B.hamifera.fasta UA-C--------------UACUCGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.G.vagum.fasta CU-C--------------UACUCGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.C.crispus.fasta CUAC--------------UACUUGGA-UACCCGU-AGUAAUUCUAGAGCU d.16.e.H.plana.fasta -AAC--------------UACUCGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.R.leptophylla.fasta -UAC--------------UACUCGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.P.pulvinata.fasta -CAC--------------UAC-CGGA-UAACCGU-AGUAAAUCUAGAGCU d.16.e.C.rubrum.fasta CUAC--------------UACUCGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.Gracilariopsis.sp.fasta AUAC--------------UACUCGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.B.moritziana.fasta -UAC--------------UACUCGGA-UAACCGU-AGUAAAGCUAGAGCU d.16.e.H.rubra.fasta -UAC--------------UAC-CGGA-UAACCGU-AGUAAUUCUAGAGCU d.16.e.D.grisea.fasta AGUU--------------AAACGGAA-UAUCCGC-AGUAAUUCUGGGGUU d.16.e.N.fowleri.fasta UUU----------------ACAAGGA--UACCACCGUUAACUGCAGCGAU d.16.e.N.gruberi.fasta UUU----------------ACAAGGA--UACCACCGUUAACUGCAGCGAU a.16.e.Hexamita.sp.fasta CGUAGUCG-------GCUAAUACGGG-CAACUCU-CUUACUAAUCGUGCU d.16.e.T.foetus.fasta CUUUCAGG-------UCUUAUUUGGA-UAGCAGC-AGUAAUUCUGGUGCU d.16.e.A.khaliulini.fasta G-----------------UGAAC--A-UAACCAU-GGUAAA-CUAUGGCU d.16.e.E.aedis.fasta U-----------------UAAAU--A-UAACCAU-GGUAAA-CUAUGGCU d.16.e.A.connecticus.fasta U-----------------UAUUU--A-UAACCAC-GGGAAA-CUGUGGCU d.16.e.I.barri.fasta U-----------------U--UU--A-UAACCAC-GGGAAA-CUGUGGCU d.16.e.A.ferocious.fasta C-----------------C-CUA--A-UAACCAC-GGUAAA-CUGUGGCU d.16.e.Amblyospora.sp.fasta U-----------------CUAAU--A-UAACCAC-GGGAAA-CUGUGGCU d.16.e.C.lunata.fasta U-----------------UAAAA--A-UAACCAU-GGGAAA-CUAUGGCU d.16.e.P.anophelis.fasta -------------------AGAG--A-UAACCAC-GGGAAA-CUGUGGCU d.16.e.Hazardia.sp.fasta A------------------GGGG--A-UAACCGC-GGUAAG-CUGCGGCU d.16.e.H.milleri.fasta G------------------GAGG--A-UAACCGC-GGUAAG-CUGCGGCU d.16.e.P.simulii.fasta G-----------------CAAGGGGA-UAACCAC-GGUAAC-CUGUGGCU d.16.e.W.palustris.fasta G-----------------CCAAUGGA-UAACCAC-GGUAAC-CUGUGGCU d.16.e.Nosema.sp.03.fasta ------------------UAGGAUUC-UAGCUAU-GUUAAA-UUAUAG-- d.16.e.Nosema.sp.05.fasta ------------------UAGGAUUC-UAACUAU-GUUAAA-UUAUAG-- d.16.e.Endoreticulatus.sp.fast ------------------UAAGACUC-UAACUAU-GUUAAA-UUAUAG-- d.16.e.Nosema.sp.02.fasta ------------------UAGGAUUC-UAACUAU-GUUAAA-UUAUAG-- d.16.e.N.spodopterae.fasta ------------------UAGGAUUC-UAACUAU-GUUAAA-UUAUAG-- d.16.e.N.trichoplusiae.fasta ------------------UAGGAUUC-UAACUAU-GUUAAA-UUAUAG-- d.16.e.N.bombycis.27.fasta ------------------UAGGAUUC-UAACUAU-GUUAAA-UUAUAG-- d.16.e.N.bombycis.02.fasta ------------------UAGGAUUC-UAACUAU-GUUAAA-UUAUAG-- d.16.e.V.imperfecta.fasta ------------------UAGGACUC-UAACUAU-GUUAAA-UUAUAG-- d.16.e.N.furnacalis.fasta ------------------UAGGAUUA-UAACUAU-GUUAAA-UUAUAG-- d.16.e.Microsporidium57864.fas -----------------AUUUGAAAC-UAACUAC-GUUAAA-GUGUAG-- d.16.e.Vairimorpha.sp.C21.fast -----------------AUUUGAAAA-UAACUAC-GUUAAA-GUGUAG-- d.16.e.N.oulemae.fasta -----------------AUUUGAUGA-UAACUAC-GUUAAA-GUGUAG-- d.16.e.N.necatrix.fasta -----------------AAAUUAGUA-UAACUGC-GUUAAA-GUGUAGC- d.16.e.V.necatrix.fasta -----------------AAAUUAGUA-UAACUGC-GUUAAA-GUGUAGC- d.16.e.N.apis.fasta ------------------AUUAUACA-UAACUAC-GUUAAA-GUGUAG-- d.16.e.O.occidentalis.fasta ------------------ACAGCAUG-UAACUAC-GUUAAA-GUGUAG-- d.16.e.Microsporidium.sp.DP119 -----------------AUAUAAAAA-UAACUAC-GGUAAC-CUGUAG-- d.16.e.V.corneae.fasta -----------------CUGUGUAGA-UAAC-AC-GUGAAA-AUGUAGC- d.16.e.A.michaelis.fasta AGGA-------------AACAGAAAA-UAAAGCA-UCUAUC-UUCUAAA- d.16.e.T.contejeani.fasta ---A-------------GAUAUAGAA-UAACCUU-GAUAAA-UUAAGGC- d.16.e.E.hellem.fasta -----------------GCCUGGAUG-UAACUGU-GGGAAA-CUGCAG-- d.16.e.Encephalitozoon.sp.fast -----------------GGAGAGCUG-UAACUGC-GGGAAA-CUGCAG-- d.16.e.E.cuniculi.fasta -----------------GAUGAGCAG-UAGCUGC-GGGAAA-CUGCAG-- d.16.e.O.colligata.fasta -----------------AAGAAGAAG-UAACGGC-GGGAAA-CUGAAGAA d.16.e.E.salmonis.fasta -----------------UGAGAAAGA-UAACCAC-GGUAAA-CUGUGG-- d.16.e.N.salmonis.fasta -----------------UGAGAAAGA-UAACCAC-GGUAAA-CUGUGG-- d.16.e.Enterocytozoonidae.sp.f -----------------UGUUUAAGA-UAACCAC-GGAAAC-CUGUGG-- d.16.e.E.bieneusi.fasta -----------------UGUGUAAAC-UAACCAC-GGUAAC-CUGUGG-- d.16.e.B.algerae.fasta ------------------UGUGUGGA-UAACCUU-GUUAAG-AUAAGGCU d.16.e.T.solenopsae.fasta ------------------UAAAUGGA-UAACCUU-GUCAAG-AUAAGGCU d.16.e.V.acridophagus.fasta ------------------CUAAAGGA-UAACCGC-GGUAAG-CUGCGGGU d.16.e.Bacillidium.sp.fasta AU----------------UAAAUGG--UAACCUU-GGUAAG-CUAAGGCU d.16.e.P.cristatellae.fasta AUG---------------UAUACGGA-UAACCAU-GGUAAG-CUAUGGCU d.16.e.Pleistophora.sp.fasta ------------------UGUCAAGA-UAACCAC-GCGAAA-GUGUGGC- d.16.e.O.operophterae.fasta -------------------CGGACGA-UAACUAC-GGGAAA-CUGUGG-- d.16.e.F.magnivora.fasta ------------------AGGAAGGA-UAACCGC-GGGAAA-CUGUGG-- d.16.e.G.atherinae.fasta ------------------AGAGUGGA-UAUCCUC-UGUAAC-CGGAGGGC d.16.e.Ichthyosporidium.sp.fas ------------------CGAGUGGA-UAUCCUC-UGUAAC-CGGAGGGC d.16.e.L.acerinae.fasta ------------------CGUGUGGA-CAUCCUC-UGUAAG-CGGAGGGA d.16.e.H.anguillarum.fasta ------------------GAGACGGA-CAACCUC-UGUAAC-CGGAGGCC d.16.e.P.mirandellae.fasta ------------------GAUGUGGA-CAACCUC-UGUAAC-CGGAGGCC d.16.e.T.hominis.fasta ------------------GGUGUGGA-CAACCUC-UGUAAA-CGGAGGCC d.16.e.V.culicis.fasta ------------------GGUGUGGA-CAACCUC-UAUAAC-CGGAGGCC d.16.e.P.hippoglossoideos.fast ------------------GGAGUGGA-CAACCUC-UGUAAC-CGGAGGCC d.16.e.Microgemma.sp.fasta ------------------GAACCGGA-CAACCUC-AGGAAA-CAGAGGGG d.16.e.S.lophii.fasta ------------------GAACCGGA-CAACCUC-AGGAAA-CAGAGGGG d.16.e.Pleistophora.sp.LS.fast ------------------AUGGUGAA-UAACCUC-AGGAAA-CGGAGGC- d.16.e.D.gammarellum.fasta ------------------GUGACGGA-CAACACC-GGGAAA-CUGGUGGG d.16.e.M.prosopium.fasta ------------------AGAGCGGA-CAACCUC-UGUAAA-CGGAGGAC d.16.e.A.scoticae.fasta -------------------G-AGGGA-UAACCGC-GGCAAG-CUGCGGCU d.16.e.P.whitei.fasta -------------------ACAAGGA-UAACCGC-GGCAAG-CUGCGGCU a.16.c.C.coccineum.fasta -------------------------------------------------- a.16.c.C.ruber.fasta -------------------------------------------------- d.16.c.N.tabacum.fasta -------------------------------------------------- d.16.c.S.oleracea.fasta -------------------------------------------------- d.16.c.Z.mays.fasta -------------------------------------------------- d.16.c.M.polymorpha.fasta -------------------------------------------------- d.16.c.R.communis.fasta -------------------------------------------------- d.16.c.C.vulgaris.fasta -------------------------------------------------- d.16.c.P.wickerhamii.fasta -------------------------------------------------- d.16.c.P.minor.fasta -------------------------------------------------- d.16.c.N.olivacea.fasta -------------------------------------------------- d.16.c.P.parkeae.fasta -------------------------------------------------- d.16.c.C.reinhardtii.fasta -------------------------------------------------- b.16.m.A.castellanii.fasta -------------------------------------------------- d.16.c.P.thurberi.fasta -------------------------------------------------- b.16.m.C.crispus.fasta -------------------------------------------------- d.16.c.T.gondii.fasta -------------------------------------------------- b.16.m.N.crassa.fasta -------------------------------------------------- b.16.m.P.anserina.fasta -------------------------------------------------- b.16.m.P.chrysogenum.fasta -------------------------------------------------- b.16.m.E.nidulans.fasta -------------------------------------------------- b.16.m.S.cerevisiae.fasta -------------------------------------------------- b.16.m.W.saturnus.m.fasta -------------------------------------------------- b.16.m.P.minor.fasta -------------------------------------------------- d.16.c.P.falciparum.fasta -------------------------------------------------- d.16.c.B.bovis.fasta -------------------------------------------------- b.16.m.T.pyriformis.fasta -------------------------------------------------- d.16.m.S.sinuspaulianus.fasta -------------------------------------------------- b.16.m.P.tetraurelia.fasta -------------------------------------------------- b.16.m.D.discoideum.fasta -------------------------------------------------- d.16.m.P.polycephalum.fasta -------------------------------------------------- b.16.m.P.littoralis.fasta -------------------------------------------------- b.16.m.P.wickerhamii.fasta -------------------------------------------------- d.16.c.H.africana.fasta -------------------------------------------------- d.16.c.C.fragile.fasta -------------------------------------------------- d.16.c.C.sertularioides.fasta -------------------------------------------------- d.16.c.C.humicola.fasta -------------------------------------------------- d.16.c.P.uvella.fasta -------------------------------------------------- a.16.c.G.nostochinearum.fasta -------------------------------------------------- a.16.c.G.wittrockiana.fasta -------------------------------------------------- d.16.c.C.paradoxa.fasta -------------------------------------------------- d.16.y.C.paradoxa.fasta -------------------------------------------------- d.16.c.Cryptomonas.sp.fasta -------------------------------------------------- d.16.c.P.palmata.fasta -------------------------------------------------- d.16.c.H.akashiwo.fasta -------------------------------------------------- d.16.c.S.pseudocostatum.fasta -------------------------------------------------- d.16.c.P.littoralis.fasta -------------------------------------------------- d.16.c.C.caldarium.fasta -------------------------------------------------- a.16.c.E.huxleyi.fasta -------------------------------------------------- d.16.c.E.gracilis.fasta -------------------------------------------------- d.16.b.Anabaena.sp.fasta -------------------------------------------------- d.16.b.Chlorogloeopsis.PCC7518 -------------------------------------------------- d.16.b.Synechococcus.sp.fasta -------------------------------------------------- d.16.b.Synechocystis.PCC6803.G -------------------------------------------------- d.16.b.O.agardhii.fasta -------------------------------------------------- d.16.b.Pleurocapsa.7516.fasta -------------------------------------------------- d.16.b.M.aeruginosa.fasta -------------------------------------------------- b.16.m.C.reinhardtii.fasta -------------------------------------------------- d.16.m.C.eugametos.fasta -------------------------------------------------- b.16.m.M.senile.fasta -------------------------------------------------- d.16.b.S.pneumoniae.fasta -------------------------------------------------- d.16.b.S.pyogenes.fasta -------------------------------------------------- d.16.b.B.anthracis.fasta -------------------------------------------------- d.16.b.B.cereus.1.fasta -------------------------------------------------- d.16.b.E.faecalis.fasta -------------------------------------------------- d.16.b.E.faecium2.fasta -------------------------------------------------- d.16.b.L.monocytogenes.fasta -------------------------------------------------- d.16.b.B.subtilis.fasta -------------------------------------------------- d.16.b.B.subtilis.GEN.fasta -------------------------------------------------- d.16.b.B.halodurans.fasta -------------------------------------------------- d.16.b.S.aureus.fasta -------------------------------------------------- d.16.b.S.aureus.GEN.fasta -------------------------------------------------- d.16.b.L.lactis.GEN.fasta -------------------------------------------------- d.16.b.S.pyogenes.GEN.fasta -------------------------------------------------- d.16.b.L.acidophilus.fasta -------------------------------------------------- d.16.b.M.capricolum.fasta -------------------------------------------------- d.16.b.M.mycoides.fasta -------------------------------------------------- d.16.b.E.rhusiopathiae.fasta -------------------------------------------------- d.16.b.C.innocuum.fasta -------------------------------------------------- d.16.b.M.genitalium.fasta -------------------------------------------------- d.16.b.M.pneumoniae.GEN.fasta -------------------------------------------------- d.16.b.M.pneumoniae.fasta -------------------------------------------------- d.16.b.M.gallisepticum.fasta -------------------------------------------------- d.16.b.U.urealyticum.fasta -------------------------------------------------- d.16.b.U.urealyticum.GEN.fasta -------------------------------------------------- d.16.b.M.hyopneumoniae.fasta -------------------------------------------------- d.16.b.F.necrophorum.fasta -------------------------------------------------- d.16.b.F.nucleatum.fasta -------------------------------------------------- d.16.b.S.moniliformis.fasta -------------------------------------------------- d.16.b.C.botulinum.F.fasta -------------------------------------------------- d.16.b.C.tetani.fasta -------------------------------------------------- d.16.b.C.perfringens.fasta -------------------------------------------------- d.16.b.C.difficile.fasta -------------------------------------------------- d.16.b.E.brachy.fasta -------------------------------------------------- d.16.b.Epulopiscium.sp.fasta -------------------------------------------------- d.16.b.H.chlorum.fasta -------------------------------------------------- b.16.m.G.max.fasta -------------------------------------------------- b.16.m.O.berteriana.fasta -------------------------------------------------- b.16.m.S.cereale.fasta -------------------------------------------------- b.16.m.T.aestivum.fasta -------------------------------------------------- d.16.m.Z.mays.fasta -------------------------------------------------- b.16.m.M.polymorpha.fasta -------------------------------------------------- b.16.m.N.olivacea.fasta -------------------------------------------------- d.16.b.G.liquefaciens.fasta -------------------------------------------------- d.16.b.B.japonicum.fasta -------------------------------------------------- d.16.b.R.acidophilus.fasta -------------------------------------------------- d.16.b.A.caulinodans.fasta -------------------------------------------------- d.16.b.B.quintana.fasta -------------------------------------------------- d.16.b.M.loti.fasta -------------------------------------------------- d.16.b.A.tumefaciens.fasta -------------------------------------------------- d.16.b.B.bacilliformis.fasta -------------------------------------------------- d.16.b.B.henselae.fasta -------------------------------------------------- d.16.b.B.melitensis.fasta -------------------------------------------------- d.16.b.R.orientis.fasta -------------------------------------------------- d.16.b.Methylobacterium.sp.fas -------------------------------------------------- d.16.b.R.bellii.fasta -------------------------------------------------- d.16.b.R.felis.URRWXCal2.fasta -------------------------------------------------- d.16.b.R.prowazekii.fasta -------------------------------------------------- d.16.b.R.prowazekii.GEN.fasta -------------------------------------------------- d.16.b.R.rickettsii.fasta -------------------------------------------------- d.16.b.A.calcoaceticus.fasta -------------------------------------------------- d.16.b.P.pacificensis.fasta -------------------------------------------------- d.16.b.C.marismortui.fasta -------------------------------------------------- d.16.b.H.halodenitrificans.fas -------------------------------------------------- d.16.b.P.aeruginosa.fasta -------------------------------------------------- d.16.b.P.aeruginosa.GEN.fasta -------------------------------------------------- d.16.b.Pseudomonas.sp.fasta -------------------------------------------------- d.16.b.P.putida.fasta -------------------------------------------------- d.16.b.C.burnetii.fasta -------------------------------------------------- d.16.b.M.capsulatus.fasta -------------------------------------------------- d.16.b.L.pneumophila.1.fasta -------------------------------------------------- d.16.b.L.pneumophila.2.fasta -------------------------------------------------- d.16.b.A.vinosum.fasta -------------------------------------------------- d.16.b.Beggiatoa.sp.fasta -------------------------------------------------- d.16.b.A.hydrophila.fasta -------------------------------------------------- d.16.b.S.putrefaciens.fasta -------------------------------------------------- d.16.b.C.freundii.fasta -------------------------------------------------- d.16.b.S.dysenteriae.1.fasta -------------------------------------------------- d.16.b.K.pneumoniae.fasta -------------------------------------------------- d.16.b.P.shigelloides.fasta -------------------------------------------------- d.16.b.Y.pestis.fasta -------------------------------------------------- d.16.b.Y.pseudotuberculosis.fa -------------------------------------------------- d.16.b.S.dysenteriae.2.fasta -------------------------------------------------- d.16.b.E.coli.0157G.GEN.fasta -------------------------------------------------- d.16.b.E.coli.EDL.GEN.fasta -------------------------------------------------- d.16.b.E.coli.fasta -------------------------------------------------- d.16.b.E.coli.K12.GEN.fasta -------------------------------------------------- h.16.b.E.coli.hlxnum.fasta -------------------------------------------------- m.16.b.E.coli.mhg.fasta -------------------------------------------------- s.16.b.E.coli.schem.fasta -------------------------------------------------- d.16.b.S.typhimurium.fasta -------------------------------------------------- d.16.b.S.marcescens.fasta -------------------------------------------------- d.16.b.E.tarda.fasta -------------------------------------------------- d.16.b.P.vulgaris.fasta -------------------------------------------------- d.16.b.V.cholerae4.fasta -------------------------------------------------- d.16.b.V.cholerae5.fasta -------------------------------------------------- d.16.b.V.cholerae2.fasta -------------------------------------------------- d.16.b.V.cholerae6.fasta -------------------------------------------------- d.16.b.V.cholerae.fasta -------------------------------------------------- d.16.b.V.cholerae.GEN.fasta -------------------------------------------------- d.16.b.V.parahaemolyticus.fast -------------------------------------------------- d.16.b.H.influenzae7.fasta -------------------------------------------------- d.16.b.H.influenzae8.fasta -------------------------------------------------- d.16.b.H.influenzae6.fasta -------------------------------------------------- d.16.b.H.influenz.fasta -------------------------------------------------- d.16.b.H.influenzae.fasta -------------------------------------------------- d.16.b.P.multocida.fasta -------------------------------------------------- d.16.b.P.multocida.GEN.fasta -------------------------------------------------- d.16.b.X.albilineans.fasta -------------------------------------------------- d.16.b.X.campestris.fasta -------------------------------------------------- d.16.b.X.fastidiosa.GEN.fasta -------------------------------------------------- d.16.b.D.nodosus.fasta -------------------------------------------------- d.16.b.F.tularensis.fasta -------------------------------------------------- d.16.b.B.parapertussis.fasta -------------------------------------------------- d.16.b.B.pertussis.fasta -------------------------------------------------- d.16.b.B.bronchiseptica2.fasta -------------------------------------------------- d.16.b.u.proteobacterium.fasta -------------------------------------------------- d.16.b.B.mallei.fasta -------------------------------------------------- d.16.b.Burkholderia.sp.fasta -------------------------------------------------- d.16.b.N.meningitidis.MD58.GEN -------------------------------------------------- d.16.b.N.meningitidis.Z2491.GE -------------------------------------------------- d.16.b.N.gonorrhoeae.fasta -------------------------------------------------- d.16.b.C.testosteroni.fasta -------------------------------------------------- d.16.b.D.desulfuricans.fasta -------------------------------------------------- d.16.b.M.xanthus.fasta -------------------------------------------------- d.16.b.D.thermophilus.fasta -------------------------------------------------- d.16.b.B.burgdorferi.fasta -------------------------------------------------- d.16.b.B.burgdorferi.GEN.fasta -------------------------------------------------- d.16.b.B.hermsii.fasta -------------------------------------------------- d.16.b.S.aurantia.fasta -------------------------------------------------- d.16.b.T.pallidum.A.fasta -------------------------------------------------- d.16.b.L.illini.fasta -------------------------------------------------- d.16.b.L.interrogans.fasta -------------------------------------------------- d.16.b.C.trachomatis.GEN.fasta -------------------------------------------------- d.16.b.C.trachomatis.L2.fasta -------------------------------------------------- d.16.b.C.muridarum.fasta -------------------------------------------------- d.16.b.C.pneumoniae.AR39.fasta -------------------------------------------------- d.16.b.C.pneumoniae.fasta -------------------------------------------------- d.16.b.C.pneumoniae.J138.fasta -------------------------------------------------- d.16.b.C.pneumoniae.CWL029.fas -------------------------------------------------- d.16.b.C.psittaci.fasta -------------------------------------------------- d.16.b.D.radiodurans.1.fasta -------------------------------------------------- d.16.b.D.radiodurans.GEN.fasta -------------------------------------------------- d.16.b.B.fragilis.fasta -------------------------------------------------- d.16.b.P.gingivalis.fasta -------------------------------------------------- d.16.b.C.vibrioforme.fasta -------------------------------------------------- d.16.b.C.jejuni.fasta -------------------------------------------------- d.16.b.C.jejuni.GEN.fasta -------------------------------------------------- d.16.b.C.sputorum.fasta -------------------------------------------------- d.16.b.H.pylori.26695.GEN.fast -------------------------------------------------- d.16.b.H.pylori.J99.GEN.fasta -------------------------------------------------- d.16.b.H.pylori2.fasta -------------------------------------------------- d.16.b.A.capsulatum.fasta -------------------------------------------------- d.16.b.H.foetida.fasta -------------------------------------------------- d.16.b.A.globiformis.fasta -------------------------------------------------- d.16.b.M.luteus.fasta -------------------------------------------------- d.16.b.Frankia.sp.fasta -------------------------------------------------- d.16.b.S.bottropensis.fasta -------------------------------------------------- d.16.b.S.scabiei.fasta -------------------------------------------------- d.16.b.S.neyagawaensis.fasta -------------------------------------------------- d.16.b.S.diastatochromogenes.f -------------------------------------------------- d.16.b.Streptomyces.sp.fasta -------------------------------------------------- d.16.b.S.acidiscabies.fasta -------------------------------------------------- d.16.b.S.griseus.fasta -------------------------------------------------- d.16.b.S.ornatus.fasta -------------------------------------------------- d.16.b.S.subrutilus.fasta -------------------------------------------------- d.16.b.S.bikiniensis.fasta -------------------------------------------------- d.16.b.S.galbus.fasta -------------------------------------------------- d.16.b.S.hygroscopicus.fasta -------------------------------------------------- d.16.b.S.lincolnensis.fasta -------------------------------------------------- d.16.b.S.coelicolor.fasta -------------------------------------------------- d.16.b.S.tendae.fasta -------------------------------------------------- d.16.b.S.ambofaciens.fasta -------------------------------------------------- d.16.b.S.eurythermus.fasta -------------------------------------------------- d.16.b.S.nodosus.fasta -------------------------------------------------- d.16.b.S.sampsonii.fasta -------------------------------------------------- d.16.b.S.glaucescens.fasta -------------------------------------------------- d.16.b.S.pseudogriseolus.fasta -------------------------------------------------- d.16.b.S.caelestis.fasta -------------------------------------------------- d.16.b.S.bluensis.fasta -------------------------------------------------- d.16.b.S.espinosus.fasta -------------------------------------------------- d.16.b.S.mashuensis.fasta -------------------------------------------------- d.16.b.S.rimosus.fasta -------------------------------------------------- d.16.b.S.limosus.fasta -------------------------------------------------- d.16.b.S.odorifer.fasta -------------------------------------------------- d.16.b.S.felleus.fasta -------------------------------------------------- d.16.b.S.albidoflavus.fasta -------------------------------------------------- d.16.b.S.gougerotii.fasta -------------------------------------------------- d.16.b.S.rutgersensis.fasta -------------------------------------------------- d.16.b.S.intermedius.fasta -------------------------------------------------- d.16.b.S.thermodiastaticus.fas -------------------------------------------------- d.16.b.S.thermoviolaceus.fasta -------------------------------------------------- d.16.b.S.thermovulgaris.1.fast -------------------------------------------------- d.16.b.S.thermovulgaris.2.fast -------------------------------------------------- d.16.b.S.macrosporus.fasta -------------------------------------------------- d.16.b.S.megasporus.fasta -------------------------------------------------- d.16.b.S.thermolineatus.fasta -------------------------------------------------- d.16.b.M.tuberculosis.2.fasta -------------------------------------------------- d.16.b.M.tuberculosis.3.fasta -------------------------------------------------- d.16.b.M.avium.fasta -------------------------------------------------- d.16.b.M.leprae.fasta -------------------------------------------------- d.16.b.M.leprae.GEN.fasta -------------------------------------------------- d.16.b.M.tuberculosis.CDC1551. -------------------------------------------------- d.16.b.M.tuberculosis.GEN.fast -------------------------------------------------- d.16.b.N.asteroides.fasta -------------------------------------------------- d.16.b.R.erythropolis.fasta -------------------------------------------------- d.16.b.C.diphtheriae.fasta -------------------------------------------------- d.16.b.A.israelii.fasta -------------------------------------------------- d.16.b.B.hyodysenteriae.fasta -------------------------------------------------- d.16.b.G.subterranea.fasta -------------------------------------------------- d.16.b.P.miotherma.fasta -------------------------------------------------- d.16.b.B.andersonii.fasta -------------------------------------------------- d.16.b.H.aurantiacus.fasta -------------------------------------------------- d.16.b.Leptospirillium.sp.fast -------------------------------------------------- d.16.b.A.aeolicus.fasta -------------------------------------------------- d.16.b.A.pyrophilus.fasta -------------------------------------------------- d.16.b.T.maritima.fasta -------------------------------------------------- d.16.b.T.maritima.GEN.fasta -------------------------------------------------- n.16.b.T.thermophilus.2.num.fa -------------------------------------------------- s.16.b.T.thermophilus.2.schem. -------------------------------------------------- d.16.b.T.thermophilus.2.fasta -------------------------------------------------- s.16.b.T.thermophilus.1.schem. -------------------------------------------------- n.16.b.T.thermophilus.1.num.fa -------------------------------------------------- d.16.b.T.thermophilus.1.fasta -------------------------------------------------- d.16.b.T.aquaticus.fasta -------------------------------------------------- d.16.b.T.roseum.fasta -------------------------------------------------- d.16.b.P.marina.fasta -------------------------------------------------- d.16.b.P.staleyi.fasta -------------------------------------------------- d.16.b.P.Schlesner.fasta -------------------------------------------------- d.16.b.G.obscuriglobus.1.fasta -------------------------------------------------- d.16.b.I.pallida.fasta -------------------------------------------------- d.16.a.P.abyssi.fasta -------------------------------------------------- d.16.a.P.horikoshii.fasta -------------------------------------------------- d.16.a.P.furiosus.fasta -------------------------------------------------- d.16.a.T.celer.fasta -------------------------------------------------- d.16.a.A.fulgidus.fasta -------------------------------------------------- d.16.a.N.equitans.fasta -------------------------------------------------- d.16.a.A.pernix.K1.fasta -------------------------------------------------- d.16.a.P.occultum.fasta -------------------------------------------------- d.16.a.T.tenax.fasta -------------------------------------------------- d.16.a.S.acidocaldarius.fasta -------------------------------------------------- d.16.a.S.solfataricus.fasta -------------------------------------------------- d.16.a.S.solfataricus.2.fasta -------------------------------------------------- d.16.a.M.thermautotrophicus.1. -------------------------------------------------- d.16.a.M.thermautotrophicus.2. -------------------------------------------------- d.16.a.M.formicicum.fasta -------------------------------------------------- d.16.a.M.vannielii.fasta -------------------------------------------------- d.16.a.H.marismortui.rrnA.fast -------------------------------------------------- d.16.a.H.marismortui.rrnB.fast -------------------------------------------------- d.16.a.Halobacterium.sp.fasta -------------------------------------------------- d.16.a.N.bangense.fasta -------------------------------------------------- d.16.a.N.innermongoliae.fasta -------------------------------------------------- d.16.a.H.volcanii.fasta -------------------------------------------------- d.16.a.M.hungatei.fasta -------------------------------------------------- d.16.a.P.torridus.fasta -------------------------------------------------- d.16.a.T.acidophilum.fasta -------------------------------------------------- a.16.e.G.ardeae.fasta AAGACGAGCGCUC---------AAGCGCGGCCG----------------- d.16.e.G.intestinalis.fasta AAGACGUGCGCGC---------AAGGGCGGGCGCCC-------------- a.16.e.G.muris.fasta AAGACGAGUGCUC---------AAGAGCGGGGA----------------- d.16.e.A.bracteata.fasta AAGACCGG-GAUC---------UGCCGUGCCCU----------------- d.16.e.Glomus.sp.W3349.fasta A-AUA-CAUGCUA-----AAAA--UCCCGACU------------------ d.16.e.S.cerradensis.fasta A-AUA-CAUGCUA-----AAAA--UCCCGACU------------------ a.16.e.G.intraradices.fasta A-AUA-CAUGCUA-----AAAC--CUCCGACU------------------ d.16.e.S.culisetae.fasta A-AUA-CAUGCAA-----AAAAC-UCCCGACU------------------ a.16.e.P.balamuthi.fasta R-GUAAUAAACCG-----AAAGCAACUCUAUCAG---------------- d.16.e.A.flavus.fasta A-AUA-CAUGCUA-----AAAAC--CUCGAC------------------- d.16.e.T.caries.fasta A-AUACAUGCUUA-----CAAGC--CCCGACUU----------------- d.16.e.M.circinelloides.fasta A-AUA-CAUGCAA-----AAAAA--CCCAAAC------------------ d.16.e.M.racemosus.fasta A-AUA-CAUGCAA-----AAAAA--CCCAAAC------------------ d.16.e.R.oryzae.fasta A-AUA-CAUGCAA-----AAAAG--CCCUGAC------------------ a.16.e.M.edulis.fasta A-A-UACAUGA------AGCACGGCUCUGACCUCGC-------------- a.16.e.P.magellanicus.fasta A-A-UACAUGC------AAAAAGGCACCGAC-UCAC-------------- b.16.e.E.granulosus.fasta A-A-UACAUGC------CUCGAUGCCCUGACCCUGCUCAUGUUUGCCUUG d.16.e.D.melanogaster.fasta A-A-UACAUGC------AAUUAAAACAUGAACCUUAU------------- b.16.e.C.koreana.fasta A-A-UACAUGC------GUUG--GGCUCCAACUUUCG------------- b.16.e.A.australis.fasta A-A-UACAUGC------AUCAGAGCUCCGACCUUCG-------------- b.16.e.O.utahensis.fasta A-A-UACAUGC------AAACAAGUCCCGACCAGAGAU------------ b.16.e.A.salina.fasta A-A-UACAUGC------ACAAUAGCCCCAACUUCAC-------------- d.16.e.M.musculus.fasta A-A-UACAUGC------CGACGGGCGCUGACCCCCCUUCC---------- d.16.e.R.norvegicus.fasta A-A-UACAUGC------CGACGGGCGCUGACCCCCCUUCC---------- d.16.e.H.sapiens.fasta A-A-UACAUGC------CGACGGGCGCUGACCCCCUU------------- d.16.e.O.cuniculus.fasta A-A-UACAUGC------CGACGG-CGCUGACUCCCUUU------------ d.16.e.X.borealis.fasta A-A-UACAUGC------CGACGAGCGCUGACCCCC--------------- d.16.e.X.laevis.fasta A-A-UACAUGC------CGACGAGCGCUGACCCCC--------------- d.16.e.A.castellanii.fasta A-A-UACAUG-------CGCAAGGUCCCGAGCGCGGGGGGCGGGGCUUCA d.16.e.B.mandrillaris.fasta A-A-UACAUG-------CCCAAAGUCCCGACUGGGGGUCGCAAGGCUCUC d.16.e.P.falciparum.A.fasta A-A-UACUUG-------CUUUAUUAUCCUU-GAUUUUUAUCUUUG----- d.16.e.P.falciparum.S.fasta A-A-UACUUG-------UGAAAAUACCUUUUGAUAUAUACAUAUGUAUGU d.16.e.P.vivax.A.fasta A-A-UACUUG-------CCUUAGCACUCUU-GAUUCAUUUCUUGA----- d.16.e.P.vivax.O.fasta A-A-UAUUUG-------GCAUAGCACUUUU-GAUUAACUUCUUAA----- d.16.e.P.vivax.S.fasta A-A-UACUUG-------CUUUAAUGCUCUC-GACGAAUGUCUUGG----- d.16.e.E.histolytica.fasta A-A-UACUUG-------AGACGAUCCAGUU-------UGUAUUAG----- d.16.e.I.hoferi.fasta A-A-UACAUG-------CGAAAAAACCCGA-------CUUCUGGA----- d.16.e.Dermocystidium.sp.fasta A-A-UACAUG-------CUAAAAAUCCCGA-------CUUCU-GG----- d.16.e.S.destruens.fasta A-A-UACAUG-------CUAAAAGUCCCGA-------CUUUUCGG----- d.16.e.A.unguiculata.fasta A-A-UACAUG-------CGAAAAUGCCCGA------CU-UCUGGA----- d.16.e.D.grandis.fasta A-A-UACAUG-------CGAAAAGGCCCGA------CUGKUUGGG----- d.16.e.A.macrogynus.fasta A-A-UACAUG-------CACAAAAGUCCUG--ACC--UUUACGGA----- d.16.e.B.emersonii.fasta A-A-UACAUG-------CACUCAAGUCCUG--ACCGCUUGUCGGA----- d.16.e.C.albicans.fasta A-A-UACAUG-------CUUAAAAUCCCGACUGUUUGG------------ d.16.e.S.cerevisiae.fasta A-A-UACAUG-------CUUAAAAUCUCGACCCUUUGG------------ d.16.e.N.crassa.fasta A-A-UACAUG-------CUAAAAACCCCGACUUCGGA------------- d.16.e.P.anserina.fasta A-A-UACAUG-------CAAAAAAUCCCGACUUCGGA------------- d.16.e.C.immitis.fasta A-A-UACAUG-------CUAAAAACCUCGACUUCGGA------------- d.16.e.L.major.fasta A-A-UACAUGAACCAACCGGGUGUUCUCCACUCCAGACGGUGGGCA---- d.16.e.T.cruzi.fasta A-A-UACAUGAACCAACCGGAUGUUCUCUGUUCCGGCGGCAGGGCA---- d.16.e.T.brucei.fasta A-A-UACAUGAACCAAUCGGACGCUCUCUUUUUCUAUGUCGCGGCUUGUG d.16.e.P.carinii.fasta A-A-UACAUG-------CAAAAAAUCCCGACUUUAUGG------------ d.16.e.C.neoformans.fasta A-A-UACAUGC------UGAAAAGCCCCGACUUCUGGA------------ d.16.e.Fungus.sp.QPX.fasta A-A-UACAUGC------UGAAAAGCCCCGACUUCUGGG------------ d.16.e.U.maydis.fasta A-A-UACAUGCG-----UAAAAAGCCCCGACUUCUGGA------------ d.16.e.M.leidyi.fasta A-A-UACAUG-------CGAAAAGUCCCGACUUCUGGA------------ d.16.e.T.cystophora.fasta A-A-UACAUG-------CGAAAAGUCCCGACCUCUGGA------------ d.16.e.M.prolifera.fasta A-A-UACAUG-------CAGAAACUCCCGACCUCUGGA------------ d.16.e.P.haeckeli.fasta A-A-UACAUAUA---ACCCAUGAAGCCUGCUUUA---------------- d.16.e.E.rotunda.fasta A-A-UACAUG-------CACAAAGUCCCAACUCUUGCGGGG--------- d.16.e.P.chromatophora.fasta A-A-UACAUG-------CGCAAAACCUGGACUCUUGCGGGA--------- d.16.e.A.majus.fasta A-A-UACGUG-------CAACAAACCCCGACUUCUG-------------- d.16.e.S.indicum.fasta A-A-UACGUG-------CAACAAACCCCGACUUCUG-------------- d.16.e.D.grandiflora.fasta A-A-UACGUG-------CAACAAACCCCGACUUCUG-------------- d.16.e.Pla.lanceolata.fasta A-A-UACGUG-------CAACAAACCCCGACUUCUG-------------- d.16.e.N.tabacum.fasta A-A-UACGUG-------CAACAAACCCCGACUUCUG-------------- d.16.e.A.thaliana.fasta A-A-UACGUG-------CAACAAACCCCGACUUAUG-------------- d.16.e.S.alba.fasta A-A-UACGUG-------CAACAAACCCCGACUUCUG-------------- d.16.e.S.tuberosum.fasta A-A-UACGUG-------CAACAAACCCCGACUUCUG-------------- d.16.e.F.x.ananassa.fasta A-A-UACGUG-------CAACAAAUCCCGACUUCUGA------------- d.16.e.G.max.fasta A-A-UACGUG-------CAACAAACCCCGACUUCUG-------------- d.16.e.O.sativa.fasta A-A-UACGUG-------CAACAAACCCCGACUUCCG-------------- d.16.e.Z.mays.fasta A-A-UACGUG-------CAACAAACCCCGACUUCCG-------------- d.16.e.A.verticilliflorum.fast A-A-UACGUG-------CAAUAAAUCUUGACUUUUG-------------- d.16.e.G.spirotaenia.fasta A-A-UACAUG-------CAUUAAGUCCCGACCUUUG-------------- d.16.e.Staurastrum.sp.M752.fas A-A-UACGUG-------CACAAACUCCCGACUUCUG-------------- d.16.e.C.paradoxa.fasta A-A-UACAUG-------CAACAAAUCCCGACUUCUG-------------- d.16.e.G.nostochinearum.fasta A-A-UACAUG-------CAACAAGUCCCGACUUCUG-------------- d.16.e.G.wittrockiana.fasta A-A-UACAUG-------CACCGAGACCCGACUUCUG-------------- d.16.e.C.luteoviridis.fasta A-A-UACGUG-------CG-UAAACCCCGACUUCGCG------------- d.16.e.O.longa.fasta A-A-UACAUG-------CUGGUUAGCCUGACUUUU--------------- d.16.e.P.weissei.fasta A-A-UACAUG-------CUGGUUAGCCUGACUUUU--------------- d.16.e.C.citrina.fasta A-A-UACAUG-------CUGGUUAGCCUGACUUUUG-------------- d.16.e.G.steinii.fasta A-A-UACAUG-------CUGUUAAGCCUGACUUUU--------------- d.16.e.Ple.lanceolata.fasta A-A-UACAUG-------CUGUUAAGCCUGACUUUU--------------- d.16.e.O.quadricornutus.fasta A-A-UACAUG-------CUGUUAAGCCUGACUUUG--------------- d.16.e.S.lemnae.fasta A-A-UACAUG-------CUGUUAAGCCCGACUUUG--------------- d.16.e.S.mytilus.fasta A-A-UACAUG-------CUGUUAAGCCCAACUUUU--------------- d.16.e.E.mobilis.fasta A-A-UACAUG-------CUGGUUAGCCUGACUUUUA-------------- d.16.e.O.granulifera.1.fasta A-A-UACAUG-------CUGGUUAGCCUGACUUUUG-------------- d.16.e.O.granulifera.2.fasta A-A-UACAUG-------CUGUUUAGCCUGACUUUUA-------------- d.16.e.U.gallina.fasta A-A-UACAUG-------CUGGUUAGCCUGACUUUUG-------------- d.16.e.U.pisces.fasta A-A-UACAUG-------CUGGUUAGCCUGACUUUU--------------- d.16.e.P.lepisma.fasta A-A-UACAUG-------CUGGUUAGCCUGACUUUU--------------- d.16.e.U.grandis.fasta A-A-UACAUG-------CUGGUUAGCCUGACUUCA--------------- d.16.e.B.coli.fasta A-A-UACAUG-------CCG--AGGCC----------------------- d.16.e.E.aediculatus.fasta A-A-UACAUG-------C-GUUACGGGGAACUUUA--------------- d.16.e.T.thermophila.fasta A-A-UACAUG-------CUUAAAAUUCCGUGUCCUG-------------- d.16.e.Bangia.sp.NWT.fasta A-A-UACAUG-------CCUCAACGCCCGACUCACG-------------- d.16.e.Bangia.sp.VIS7.fasta A-A-UACAUG-------CAUUAAGGCCUGACUUUUGUG------------ d.16.e.E.carnea.fasta A-A-UACAUG-------CCUACACGCCCGACUCACG-------------- d.16.e.R.parvula.fasta A-A-UACGUG-------CCUACACGCCCGACUCACG-------------- d.16.e.C.coeruleus.fasta A-A-UACAUG-------CCUACAGACCCGACUUUGG-------------- d.16.e.P.aerugineum.1.fasta A-A-UACAUG-------CGCCAACAUCCGACUCRCG-------------- d.16.e.R.maculata.fasta A-A-UACGUG-------CCUCAACGCCCGACUCACG-------------- d.16.e.A.ambigua.fasta A-A-UACAUG-------CGUCAAGAUCCGACUUC---------------- d.16.e.A.baicalensis.fasta A-A-UACAUG-------CGUCAAGAUCCGACUUC---------------- d.16.e.S.nipponica.fasta A-A-UACAUG-------CAUCAAGGCCCGACUUC---------------- d.16.e.C.radiatus.fasta A-A-UACAUG-------CGCAAAGUCUUGACUAUCCU------------- d.16.e.C.criophilum.fasta A-A-UACAUG-------CAAAAAUACCUGACCUUUUA------------- d.16.e.A.capitellata.fasta A-A-UACAUG-------CGUCAAUACCC---------------------- d.16.e.S.pupula.fasta A-A-UACAUG-------CGUCAAUACUC---------------------- d.16.e.T.antarctica.fasta A-A-UACAUG-------CGUCAAUACCC---------------------- d.16.e.E.triangulatum.fasta A-A-UACAUG-------CGUCAAUACCC---------------------- d.16.e.A.bongranii.fasta A-A-UACAUG-------CGUCGAUACCC---------------------- d.16.e.Pseudogomphonema.sp.fas A-A-UACAUG-------CGUCAAUACCC---------------------- d.16.e.D.tenue.fasta A-A-UACAUG-------CGUCAAUACCC---------------------- d.16.e.G.marina.fasta A-A-UACAUG-------CGUCAAUACCC---------------------- d.16.e.Thalassionema.sp.fasta A-A-UACAUG-------CGUCAACACCC---------------------- d.16.e.R.belgicae.fasta A-A-CACAUG-------CAUCAAUACCCGAC------------------- d.16.e.Undatella.sp.fasta A-A-UACAUG-------CGUCAAUACUC---------------------- d.16.e.C.belgica.fasta A-A-UACAUG-------CAUCAAUACCCAACUG----------------- d.16.e.O.sinensis.fasta A-A-UACAUG-------CAUCAACACCCAACCG----------------- d.16.e.D.brightwellii.fasta A-A-UACAUG-------CAUCAAUACCCAACUG----------------- d.16.e.L.undulatum.fasta A-A-UACAUG-------CAUCAAUACCCAACUG----------------- d.16.e.T.eccentrica.fasta A-A-UACAUG-------CAUCAAUACCCAACUG----------------- d.16.e.T.pseudonana.fasta A-A-UACAUG-------CAUCAAUACCCGACUG----------------- d.16.e.S.costatum.fasta A-A-UAUAUG-------CAUCAAAGCGGAACU------------------ d.16.e.P.laevis.fasta A-A-UACAUG-------CAUCAAUACCCGACCG----------------- d.16.e.L.borealis.fasta A-A-UACAUG-------CAUCAUGACCCGACUUC---------------- d.16.e.P.pseudodenticulata.fas A-A-UACAUG-------CAUCAUAACCCGACU------------------ d.16.e.B.mediterranea.fasta A-A-UACAUG-------CGUAAACACCCAACCU----------------- d.16.e.B.pacifica.fasta A-A-UACAUG-------CGUAAACACCCAACUG----------------- d.16.e.L.minuta.fasta A-A-UACAUG-------CAACAAAGCCCAUUU------------------ d.16.e.L.danicus.fasta A-A-UACAUG-------CGUCAAUGCUCAACC------------------ d.16.e.Chaetoceros.sp.fasta A-A-UACAUG-------CGUAAACACUCGACC------------------ d.16.e.A.invadans.fasta A-A-UACAUG-------CAUAAAUACCCAACUGC---------------- d.16.e.L.giganteum.fasta A-A-UACAUG-------CGCAAAUACCCAACUGC---------------- d.16.e.M.varians.fasta A-A-UACAUG-------CAUAAAAAUCUGACUUC---------------- d.16.e.B.hominis.fasta A-A-UACAUG-------AGAAAGUCCUCU--------------------- d.16.e.P.marinus.fasta A-A-UACAUGCGU-------CAAGGCCCGACUUCGGA------------- d.16.e.T.gondii.fasta A-A-UACAUGCGCA------CAUGCCUCUUCCCCUGG------------- d.16.e.A.fundyense.fasta A-A-UACAUGCAC-------UAAAACUUAUCUUUGGGG------------ d.16.e.B.bigemina.fasta A-A-UACAAGUUC--------GAGGCCUUUU------------------- d.16.e.B.canis.fasta A-A-UACACGUUG--------GAGGCCUUUU------------------- d.16.e.Babesia.sp.OKD.fasta A-A-UACAAGUUC--------GAGGCCUUUUU------------------ d.16.e.B.microti.1.fasta A-A-UACAUGCUC--------GAGGCGCGUAUUUUAC------------- d.16.e.B.microti.2.fasta A-A-UACAUGCUC--------GAGGCGCGUUUUU--C------------- d.16.e.B.microti.3.fasta A-A-UACAUGCUC--------GAGGCGCGUUUUA--C------------- d.16.e.B.microti.4.fasta A-A-UACAUGCUC--------GAGGCGCGUUUU---C------------- d.16.e.B.microti.5.fasta A-A-UACAUGCUC--------GAGGCGCGUUUU---C------------- d.16.e.B.rodhaini.fasta A-A-UACAUGC-----------AUGUGCGUUU------------------ d.16.e.B.gibsoni.fasta A-A-UACAUGAUC--------GAGGUCCUUCU------------------ d.16.e.B.bovis.fasta A-A-UACACGUUU--------GAGGUUAUU-------------------- d.16.e.J.libera.fasta A-A-UACAUGCAC-------AAACUCCCGCGUUU--GA------------ d.16.e.R.americana.fasta A-A-UACAUGCAC-------AAACUCUCGGCCUUACGG------------ d.16.e.B.ostreae.fasta A-A-UACGUG---------ACAAACCCUGCCUC----------------- d.16.e.A.dasyae.fasta A-A-UACGUGCCA----CAA-----CGCGAGGUAAC-------------- d.16.e.A.hermannii.fasta A-A-UACGUGCCA----CAA-----CGCGGGGCAAC-------------- d.16.e.N.helminthoides.fasta A-A-UACGUGCCA----CAA-----CACGGCGUAAG-------------- d.16.e.B.gelatinosum.fasta A-A-UACGUGCCA----AAA-----CGCGGGGUAAC-------------- d.16.e.N.tortuosa.fasta A-A-UACGUGCCA----ACA-----CGCGGGGCAAC-------------- d.16.e.T.hispida.fasta A-A-UACGUGGGA----AAA-----CGCGGGGCAAC-------------- d.16.e.T.violacea.4.fasta A-A-UACGUGGGA----AAA-----CGCGGGGCAAC-------------- d.16.e.T.violacea.1.fasta A-A-UACGUGCCA----ACA-----CGCGGGGCAAC-------------- d.16.e.T.violacea.2.fasta A-A-UACGUGCCA----ACA-----CGCGGGGCAAC-------------- d.16.e.N.shawii.fasta A-A-UACGUGCCA----ACA-----CGCGGGGCAAC-------------- d.16.e.B.investiens.fasta A-A-UACGUGCCG----CAA-----CGCGGGGUAAC-------------- d.16.e.B.macrosporum.fasta A-A-UACGUGCCA----UCA-----CGCGGGGCAAC-------------- d.16.e.A.plicata.fasta A-A-UACGUGCCG----CAA-----CGCGGGGUAAC-------------- d.16.e.C.officinalis.fasta A-A-UACGUGCCA----CAA---UGCUUGGGUUUAC-------------- d.16.e.R.carriebowensis.fasta A-A-UACGUGCCA----CAAA--UGCGGGGUUUCGG-------------- d.16.e.B.hamifera.fasta A-A-UACGUGCCG----G-----AACGC---------------------- d.16.e.G.vagum.fasta A-A-UACGUGCCA----C-----AAGGCAACUUUU--------------- d.16.e.C.crispus.fasta A-A-UACAAGCCU----U-----AAAGCGACAUUUA-------------- d.16.e.H.plana.fasta A-A-UACGUGCCC----U-----AAGACGACGCAA--------------- d.16.e.R.leptophylla.fasta A-A-UACGUGCCA----C-----AAGACGACUCAA--------------- d.16.e.P.pulvinata.fasta A-A-UACGUGCCA----CU----AAAACGGUGAAA--------------- d.16.e.C.rubrum.fasta A-AAUACGUGCCA----U-----ACGGCGAGGUUUUA------------- d.16.e.Gracilariopsis.sp.fasta A-A-UACGUGCCU----AC----ACAGCGACGCAA--------------- d.16.e.B.moritziana.fasta A-A-UACGUGCUA----CAAAAUGAGGCGAGCAAUCGU------------ d.16.e.H.rubra.fasta A-A-UACGUGCCC----GAA-----AGCGAGUCUCU-------------- d.16.e.D.grisea.fasta A-A-UACGUGAUA----UGU---AGCCCGAAAUAAG-------------- d.16.e.N.fowleri.fasta A-A-UACUUGUUCCCUUCGGGGUGGUAGUAGUAUUUGUGCUGAAACCUAG d.16.e.N.gruberi.fasta A---UACUUGUUCCCUUCGGGGUGGUAAUAGUAUUUGUGCUGAAGCCUAG a.16.e.Hexamita.sp.fasta UCGUUACAUCGGU------------------------------------- d.16.e.T.foetus.fasta --AAUACAU----------------------------------------- d.16.e.A.khaliulini.fasta AA------------------------------------------------ d.16.e.E.aedis.fasta AA------------------------------------------------ d.16.e.A.connecticus.fasta AA------------------------------------------------ d.16.e.I.barri.fasta AA------------------------------------------------ d.16.e.A.ferocious.fasta AA------------------------------------------------ d.16.e.Amblyospora.sp.fasta AA------------------------------------------------ d.16.e.C.lunata.fasta AAAUA--------------------------------------------- d.16.e.P.anophelis.fasta GA------------------------------------------------ d.16.e.Hazardia.sp.fasta AAUAC--------------------------------------------- d.16.e.H.milleri.fasta AAGAC--------------------------------------------- d.16.e.P.simulii.fasta AAGACGACGGAGA----------UAUGCGGGCACUGA------------- d.16.e.W.palustris.fasta AACACAACGGAAA----------UAUGUCAUUGGUGA------------- d.16.e.Nosema.sp.03.fasta -------------------------------------------------- d.16.e.Nosema.sp.05.fasta -------------------------------------------------- d.16.e.Endoreticulatus.sp.fast -------------------------------------------------- d.16.e.Nosema.sp.02.fasta -------------------------------------------------- d.16.e.N.spodopterae.fasta -------------------------------------------------- d.16.e.N.trichoplusiae.fasta -------------------------------------------------- d.16.e.N.bombycis.27.fasta -------------------------------------------------- d.16.e.N.bombycis.02.fasta -------------------------------------------------- d.16.e.V.imperfecta.fasta -------------------------------------------------- d.16.e.N.furnacalis.fasta -------------------------------------------------- d.16.e.Microsporidium57864.fas -------------------------------------------------- d.16.e.Vairimorpha.sp.C21.fast -------------------------------------------------- d.16.e.N.oulemae.fasta -------------------------------------------------- d.16.e.N.necatrix.fasta -------------------------------------------------- d.16.e.V.necatrix.fasta -------------------------------------------------- d.16.e.N.apis.fasta -------------------------------------------------- d.16.e.O.occidentalis.fasta -------------------------------------------------- d.16.e.Microsporidium.sp.DP119 -------------------------------------------------- d.16.e.V.corneae.fasta -------------------------------------------------- d.16.e.A.michaelis.fasta -------------------------------------------------- d.16.e.T.contejeani.fasta -------------------------------------------------- d.16.e.E.hellem.fasta ------------------------------GUAAGUU------------- d.16.e.Encephalitozoon.sp.fast ------------------------------GUAGG--------------- d.16.e.E.cuniculi.fasta ------------------------------AUAGU--------------- d.16.e.O.colligata.fasta GAGAGUUUUUGAG----------AAUACUUGAAGGGA------------- d.16.e.E.salmonis.fasta -------------------------------------------------- d.16.e.N.salmonis.fasta -------------------------------------------------- d.16.e.Enterocytozoonidae.sp.f -------------------------------------------------- d.16.e.E.bieneusi.fasta -------------------------------------------------- d.16.e.B.algerae.fasta AAGACUUAGCGUG----------UCGCAC--------------------- d.16.e.T.solenopsae.fasta AAUACAGUAAAGA----------UGUUAG--------------------- d.16.e.V.acridophagus.fasta AAAACUUCAAGCU----------AUGUG---------------------- d.16.e.Bacillidium.sp.fasta AAUACAU-------------------------AUUAU------------- d.16.e.P.cristatellae.fasta AAUACGUGAACAG----------GU------UAUUGC------------- d.16.e.Pleistophora.sp.fasta -------------------------------------------------- d.16.e.O.operophterae.fasta -------------------------------------------------- d.16.e.F.magnivora.fasta -------------------------------------------------- d.16.e.G.atherinae.fasta AAAACACAAGAUG----------AGCGAUUG-A----------------- d.16.e.Ichthyosporidium.sp.fas AAAACACAGGACG----------UGCAGUUGUA----------------- d.16.e.L.acerinae.fasta AAAACACAGGACG----------CGCGG----A----------------- d.16.e.H.anguillarum.fasta AAUACGUCAGAGG----------CACGGUUACCCUGU------------- d.16.e.P.mirandellae.fasta AAUACACAUGAGG----------CACUGUUUCC--GU------------- d.16.e.T.hominis.fasta AAAACACAGGAGC----------GCCGUG-UAC----------------- d.16.e.V.culicis.fasta AAAACACAGGAGG----------CGCGUGACAC----------------- d.16.e.P.hippoglossoideos.fast AAAACACGGGAGG----------GGCAUGCAGU----------------- d.16.e.Microgemma.sp.fasta AAAACGGAGUAAA----------AGCAUGUUUU----------------- d.16.e.S.lophii.fasta AAAACGGAGUAAG----------AGCAUGUGUU----------------- d.16.e.Pleistophora.sp.LS.fast ---------UAAA----------AGCCGG--------------------- d.16.e.D.gammarellum.fasta AAAACGUCUAUAC----------UGCAGGAGUA----------------- d.16.e.M.prosopium.fasta AAAACGCAUUAUG----------GGCAUGUCCG----------------- d.16.e.A.scoticae.fasta AAGACAAGGG---------------------------------------- d.16.e.P.whitei.fasta AAGACAUGGAC--------------------------------------- a.16.c.C.coccineum.fasta -------------------------------------------------- a.16.c.C.ruber.fasta -------------------------------------------------- d.16.c.N.tabacum.fasta -------------------------------------------------- d.16.c.S.oleracea.fasta -------------------------------------------------- d.16.c.Z.mays.fasta -------------------------------------------------- d.16.c.M.polymorpha.fasta -------------------------------------------------- d.16.c.R.communis.fasta -------------------------------------------------- d.16.c.C.vulgaris.fasta -------------------------------------------------- d.16.c.P.wickerhamii.fasta -------------------------------------------------- d.16.c.P.minor.fasta -------------------------------------------------- d.16.c.N.olivacea.fasta -------------------------------------------------- d.16.c.P.parkeae.fasta -------------------------------------------------- d.16.c.C.reinhardtii.fasta -------------------------------------------------- b.16.m.A.castellanii.fasta -------------------------------------------------- d.16.c.P.thurberi.fasta -------------------------------------------------- b.16.m.C.crispus.fasta -------------------------------------------------- d.16.c.T.gondii.fasta -------------------------------------------------- b.16.m.N.crassa.fasta -------------------------------------------------- b.16.m.P.anserina.fasta -------------------------------------------------- b.16.m.P.chrysogenum.fasta -------------------------------------------------- b.16.m.E.nidulans.fasta -------------------------------------------------- b.16.m.S.cerevisiae.fasta -------------------------------------------------- b.16.m.W.saturnus.m.fasta -------------------------------------------------- b.16.m.P.minor.fasta -------------------------------------------------- d.16.c.P.falciparum.fasta -------------------------------------------------- d.16.c.B.bovis.fasta -------------------------------------------------- b.16.m.T.pyriformis.fasta -------------------------------------------------- d.16.m.S.sinuspaulianus.fasta -------------------------------------------------- b.16.m.P.tetraurelia.fasta -------------------------------------------------- b.16.m.D.discoideum.fasta -------------------------------------------------- d.16.m.P.polycephalum.fasta -------------------------------------------------- b.16.m.P.littoralis.fasta -------------------------------------------------- b.16.m.P.wickerhamii.fasta -------------------------------------------------- d.16.c.H.africana.fasta -------------------------------------------------- d.16.c.C.fragile.fasta -------------------------------------------------- d.16.c.C.sertularioides.fasta -------------------------------------------------- d.16.c.C.humicola.fasta -------------------------------------------------- d.16.c.P.uvella.fasta -------------------------------------------------- a.16.c.G.nostochinearum.fasta -------------------------------------------------- a.16.c.G.wittrockiana.fasta -------------------------------------------------- d.16.c.C.paradoxa.fasta -------------------------------------------------- d.16.y.C.paradoxa.fasta -------------------------------------------------- d.16.c.Cryptomonas.sp.fasta -------------------------------------------------- d.16.c.P.palmata.fasta -------------------------------------------------- d.16.c.H.akashiwo.fasta -------------------------------------------------- d.16.c.S.pseudocostatum.fasta -------------------------------------------------- d.16.c.P.littoralis.fasta -------------------------------------------------- d.16.c.C.caldarium.fasta -------------------------------------------------- a.16.c.E.huxleyi.fasta -------------------------------------------------- d.16.c.E.gracilis.fasta -------------------------------------------------- d.16.b.Anabaena.sp.fasta -------------------------------------------------- d.16.b.Chlorogloeopsis.PCC7518 -------------------------------------------------- d.16.b.Synechococcus.sp.fasta -------------------------------------------------- d.16.b.Synechocystis.PCC6803.G -------------------------------------------------- d.16.b.O.agardhii.fasta -------------------------------------------------- d.16.b.Pleurocapsa.7516.fasta -------------------------------------------------- d.16.b.M.aeruginosa.fasta -------------------------------------------------- b.16.m.C.reinhardtii.fasta -------------------------------------------------- d.16.m.C.eugametos.fasta -------------------------------------------------- b.16.m.M.senile.fasta -------------------------------------------------- d.16.b.S.pneumoniae.fasta -------------------------------------------------- d.16.b.S.pyogenes.fasta -------------------------------------------------- d.16.b.B.anthracis.fasta -------------------------------------------------- d.16.b.B.cereus.1.fasta -------------------------------------------------- d.16.b.E.faecalis.fasta -------------------------------------------------- d.16.b.E.faecium2.fasta -------------------------------------------------- d.16.b.L.monocytogenes.fasta -------------------------------------------------- d.16.b.B.subtilis.fasta -------------------------------------------------- d.16.b.B.subtilis.GEN.fasta -------------------------------------------------- d.16.b.B.halodurans.fasta -------------------------------------------------- d.16.b.S.aureus.fasta -------------------------------------------------- d.16.b.S.aureus.GEN.fasta -------------------------------------------------- d.16.b.L.lactis.GEN.fasta -------------------------------------------------- d.16.b.S.pyogenes.GEN.fasta -------------------------------------------------- d.16.b.L.acidophilus.fasta -------------------------------------------------- d.16.b.M.capricolum.fasta -------------------------------------------------- d.16.b.M.mycoides.fasta -------------------------------------------------- d.16.b.E.rhusiopathiae.fasta -------------------------------------------------- d.16.b.C.innocuum.fasta -------------------------------------------------- d.16.b.M.genitalium.fasta -------------------------------------------------- d.16.b.M.pneumoniae.GEN.fasta -------------------------------------------------- d.16.b.M.pneumoniae.fasta -------------------------------------------------- d.16.b.M.gallisepticum.fasta -------------------------------------------------- d.16.b.U.urealyticum.fasta -------------------------------------------------- d.16.b.U.urealyticum.GEN.fasta -------------------------------------------------- d.16.b.M.hyopneumoniae.fasta -------------------------------------------------- d.16.b.F.necrophorum.fasta -------------------------------------------------- d.16.b.F.nucleatum.fasta -------------------------------------------------- d.16.b.S.moniliformis.fasta -------------------------------------------------- d.16.b.C.botulinum.F.fasta -------------------------------------------------- d.16.b.C.tetani.fasta -------------------------------------------------- d.16.b.C.perfringens.fasta -------------------------------------------------- d.16.b.C.difficile.fasta -------------------------------------------------- d.16.b.E.brachy.fasta -------------------------------------------------- d.16.b.Epulopiscium.sp.fasta -------------------------------------------------- d.16.b.H.chlorum.fasta -------------------------------------------------- b.16.m.G.max.fasta -------------------------------------------------- b.16.m.O.berteriana.fasta -------------------------------------------------- b.16.m.S.cereale.fasta -------------------------------------------------- b.16.m.T.aestivum.fasta -------------------------------------------------- d.16.m.Z.mays.fasta -------------------------------------------------- b.16.m.M.polymorpha.fasta -------------------------------------------------- b.16.m.N.olivacea.fasta -------------------------------------------------- d.16.b.G.liquefaciens.fasta -------------------------------------------------- d.16.b.B.japonicum.fasta -------------------------------------------------- d.16.b.R.acidophilus.fasta -------------------------------------------------- d.16.b.A.caulinodans.fasta -------------------------------------------------- d.16.b.B.quintana.fasta -------------------------------------------------- d.16.b.M.loti.fasta -------------------------------------------------- d.16.b.A.tumefaciens.fasta -------------------------------------------------- d.16.b.B.bacilliformis.fasta -------------------------------------------------- d.16.b.B.henselae.fasta -------------------------------------------------- d.16.b.B.melitensis.fasta -------------------------------------------------- d.16.b.R.orientis.fasta -------------------------------------------------- d.16.b.Methylobacterium.sp.fas -------------------------------------------------- d.16.b.R.bellii.fasta -------------------------------------------------- d.16.b.R.felis.URRWXCal2.fasta -------------------------------------------------- d.16.b.R.prowazekii.fasta -------------------------------------------------- d.16.b.R.prowazekii.GEN.fasta -------------------------------------------------- d.16.b.R.rickettsii.fasta -------------------------------------------------- d.16.b.A.calcoaceticus.fasta -------------------------------------------------- d.16.b.P.pacificensis.fasta -------------------------------------------------- d.16.b.C.marismortui.fasta -------------------------------------------------- d.16.b.H.halodenitrificans.fas -------------------------------------------------- d.16.b.P.aeruginosa.fasta -------------------------------------------------- d.16.b.P.aeruginosa.GEN.fasta -------------------------------------------------- d.16.b.Pseudomonas.sp.fasta -------------------------------------------------- d.16.b.P.putida.fasta -------------------------------------------------- d.16.b.C.burnetii.fasta -------------------------------------------------- d.16.b.M.capsulatus.fasta -------------------------------------------------- d.16.b.L.pneumophila.1.fasta -------------------------------------------------- d.16.b.L.pneumophila.2.fasta -------------------------------------------------- d.16.b.A.vinosum.fasta -------------------------------------------------- d.16.b.Beggiatoa.sp.fasta -------------------------------------------------- d.16.b.A.hydrophila.fasta -------------------------------------------------- d.16.b.S.putrefaciens.fasta -------------------------------------------------- d.16.b.C.freundii.fasta -------------------------------------------------- d.16.b.S.dysenteriae.1.fasta -------------------------------------------------- d.16.b.K.pneumoniae.fasta -------------------------------------------------- d.16.b.P.shigelloides.fasta -------------------------------------------------- d.16.b.Y.pestis.fasta -------------------------------------------------- d.16.b.Y.pseudotuberculosis.fa -------------------------------------------------- d.16.b.S.dysenteriae.2.fasta -------------------------------------------------- d.16.b.E.coli.0157G.GEN.fasta -------------------------------------------------- d.16.b.E.coli.EDL.GEN.fasta -------------------------------------------------- d.16.b.E.coli.fasta -------------------------------------------------- d.16.b.E.coli.K12.GEN.fasta -------------------------------------------------- h.16.b.E.coli.hlxnum.fasta -------------------------------------------------- m.16.b.E.coli.mhg.fasta -------------------------------------------------- s.16.b.E.coli.schem.fasta -------------------------------------------------- d.16.b.S.typhimurium.fasta -------------------------------------------------- d.16.b.S.marcescens.fasta -------------------------------------------------- d.16.b.E.tarda.fasta -------------------------------------------------- d.16.b.P.vulgaris.fasta -------------------------------------------------- d.16.b.V.cholerae4.fasta -------------------------------------------------- d.16.b.V.cholerae5.fasta -------------------------------------------------- d.16.b.V.cholerae2.fasta -------------------------------------------------- d.16.b.V.cholerae6.fasta -------------------------------------------------- d.16.b.V.cholerae.fasta -------------------------------------------------- d.16.b.V.cholerae.GEN.fasta -------------------------------------------------- d.16.b.V.parahaemolyticus.fast -------------------------------------------------- d.16.b.H.influenzae7.fasta -------------------------------------------------- d.16.b.H.influenzae8.fasta -------------------------------------------------- d.16.b.H.influenzae6.fasta -------------------------------------------------- d.16.b.H.influenz.fasta -------------------------------------------------- d.16.b.H.influenzae.fasta -------------------------------------------------- d.16.b.P.multocida.fasta -------------------------------------------------- d.16.b.P.multocida.GEN.fasta -------------------------------------------------- d.16.b.X.albilineans.fasta -------------------------------------------------- d.16.b.X.campestris.fasta -------------------------------------------------- d.16.b.X.fastidiosa.GEN.fasta -------------------------------------------------- d.16.b.D.nodosus.fasta -------------------------------------------------- d.16.b.F.tularensis.fasta -------------------------------------------------- d.16.b.B.parapertussis.fasta -------------------------------------------------- d.16.b.B.pertussis.fasta -------------------------------------------------- d.16.b.B.bronchiseptica2.fasta -------------------------------------------------- d.16.b.u.proteobacterium.fasta -------------------------------------------------- d.16.b.B.mallei.fasta -------------------------------------------------- d.16.b.Burkholderia.sp.fasta -------------------------------------------------- d.16.b.N.meningitidis.MD58.GEN -------------------------------------------------- d.16.b.N.meningitidis.Z2491.GE -------------------------------------------------- d.16.b.N.gonorrhoeae.fasta -------------------------------------------------- d.16.b.C.testosteroni.fasta -------------------------------------------------- d.16.b.D.desulfuricans.fasta -------------------------------------------------- d.16.b.M.xanthus.fasta -------------------------------------------------- d.16.b.D.thermophilus.fasta -------------------------------------------------- d.16.b.B.burgdorferi.fasta -------------------------------------------------- d.16.b.B.burgdorferi.GEN.fasta -------------------------------------------------- d.16.b.B.hermsii.fasta -------------------------------------------------- d.16.b.S.aurantia.fasta -------------------------------------------------- d.16.b.T.pallidum.A.fasta -------------------------------------------------- d.16.b.L.illini.fasta -------------------------------------------------- d.16.b.L.interrogans.fasta -------------------------------------------------- d.16.b.C.trachomatis.GEN.fasta -------------------------------------------------- d.16.b.C.trachomatis.L2.fasta -------------------------------------------------- d.16.b.C.muridarum.fasta -------------------------------------------------- d.16.b.C.pneumoniae.AR39.fasta -------------------------------------------------- d.16.b.C.pneumoniae.fasta -------------------------------------------------- d.16.b.C.pneumoniae.J138.fasta -------------------------------------------------- d.16.b.C.pneumoniae.CWL029.fas -------------------------------------------------- d.16.b.C.psittaci.fasta -------------------------------------------------- d.16.b.D.radiodurans.1.fasta -------------------------------------------------- d.16.b.D.radiodurans.GEN.fasta -------------------------------------------------- d.16.b.B.fragilis.fasta -------------------------------------------------- d.16.b.P.gingivalis.fasta -------------------------------------------------- d.16.b.C.vibrioforme.fasta -------------------------------------------------- d.16.b.C.jejuni.fasta -------------------------------------------------- d.16.b.C.jejuni.GEN.fasta -------------------------------------------------- d.16.b.C.sputorum.fasta -------------------------------------------------- d.16.b.H.pylori.26695.GEN.fast -------------------------------------------------- d.16.b.H.pylori.J99.GEN.fasta -------------------------------------------------- d.16.b.H.pylori2.fasta -------------------------------------------------- d.16.b.A.capsulatum.fasta -------------------------------------------------- d.16.b.H.foetida.fasta -------------------------------------------------- d.16.b.A.globiformis.fasta -------------------------------------------------- d.16.b.M.luteus.fasta -------------------------------------------------- d.16.b.Frankia.sp.fasta -------------------------------------------------- d.16.b.S.bottropensis.fasta -------------------------------------------------- d.16.b.S.scabiei.fasta -------------------------------------------------- d.16.b.S.neyagawaensis.fasta -------------------------------------------------- d.16.b.S.diastatochromogenes.f -------------------------------------------------- d.16.b.Streptomyces.sp.fasta -------------------------------------------------- d.16.b.S.acidiscabies.fasta -------------------------------------------------- d.16.b.S.griseus.fasta -------------------------------------------------- d.16.b.S.ornatus.fasta -------------------------------------------------- d.16.b.S.subrutilus.fasta -------------------------------------------------- d.16.b.S.bikiniensis.fasta -------------------------------------------------- d.16.b.S.galbus.fasta -------------------------------------------------- d.16.b.S.hygroscopicus.fasta -------------------------------------------------- d.16.b.S.lincolnensis.fasta -------------------------------------------------- d.16.b.S.coelicolor.fasta -------------------------------------------------- d.16.b.S.tendae.fasta -------------------------------------------------- d.16.b.S.ambofaciens.fasta -------------------------------------------------- d.16.b.S.eurythermus.fasta -------------------------------------------------- d.16.b.S.nodosus.fasta -------------------------------------------------- d.16.b.S.sampsonii.fasta -------------------------------------------------- d.16.b.S.glaucescens.fasta -------------------------------------------------- d.16.b.S.pseudogriseolus.fasta -------------------------------------------------- d.16.b.S.caelestis.fasta -------------------------------------------------- d.16.b.S.bluensis.fasta -------------------------------------------------- d.16.b.S.espinosus.fasta -------------------------------------------------- d.16.b.S.mashuensis.fasta -------------------------------------------------- d.16.b.S.rimosus.fasta -------------------------------------------------- d.16.b.S.limosus.fasta -------------------------------------------------- d.16.b.S.odorifer.fasta -------------------------------------------------- d.16.b.S.felleus.fasta -------------------------------------------------- d.16.b.S.albidoflavus.fasta -------------------------------------------------- d.16.b.S.gougerotii.fasta -------------------------------------------------- d.16.b.S.rutgersensis.fasta -------------------------------------------------- d.16.b.S.intermedius.fasta -------------------------------------------------- d.16.b.S.thermodiastaticus.fas -------------------------------------------------- d.16.b.S.thermoviolaceus.fasta -------------------------------------------------- d.16.b.S.thermovulgaris.1.fast -------------------------------------------------- d.16.b.S.thermovulgaris.2.fast -------------------------------------------------- d.16.b.S.macrosporus.fasta -------------------------------------------------- d.16.b.S.megasporus.fasta -------------------------------------------------- d.16.b.S.thermolineatus.fasta -------------------------------------------------- d.16.b.M.tuberculosis.2.fasta -------------------------------------------------- d.16.b.M.tuberculosis.3.fasta -------------------------------------------------- d.16.b.M.avium.fasta -------------------------------------------------- d.16.b.M.leprae.fasta -------------------------------------------------- d.16.b.M.leprae.GEN.fasta -------------------------------------------------- d.16.b.M.tuberculosis.CDC1551. -------------------------------------------------- d.16.b.M.tuberculosis.GEN.fast -------------------------------------------------- d.16.b.N.asteroides.fasta -------------------------------------------------- d.16.b.R.erythropolis.fasta -------------------------------------------------- d.16.b.C.diphtheriae.fasta -------------------------------------------------- d.16.b.A.israelii.fasta -------------------------------------------------- d.16.b.B.hyodysenteriae.fasta -------------------------------------------------- d.16.b.G.subterranea.fasta -------------------------------------------------- d.16.b.P.miotherma.fasta -------------------------------------------------- d.16.b.B.andersonii.fasta -------------------------------------------------- d.16.b.H.aurantiacus.fasta -------------------------------------------------- d.16.b.Leptospirillium.sp.fast -------------------------------------------------- d.16.b.A.aeolicus.fasta -------------------------------------------------- d.16.b.A.pyrophilus.fasta -------------------------------------------------- d.16.b.T.maritima.fasta -------------------------------------------------- d.16.b.T.maritima.GEN.fasta -------------------------------------------------- n.16.b.T.thermophilus.2.num.fa -------------------------------------------------- s.16.b.T.thermophilus.2.schem. -------------------------------------------------- d.16.b.T.thermophilus.2.fasta -------------------------------------------------- s.16.b.T.thermophilus.1.schem. -------------------------------------------------- n.16.b.T.thermophilus.1.num.fa -------------------------------------------------- d.16.b.T.thermophilus.1.fasta -------------------------------------------------- d.16.b.T.aquaticus.fasta -------------------------------------------------- d.16.b.T.roseum.fasta -------------------------------------------------- d.16.b.P.marina.fasta -------------------------------------------------- d.16.b.P.staleyi.fasta -------------------------------------------------- d.16.b.P.Schlesner.fasta -------------------------------------------------- d.16.b.G.obscuriglobus.1.fasta -------------------------------------------------- d.16.b.I.pallida.fasta -------------------------------------------------- d.16.a.P.abyssi.fasta -------------------------------------------------- d.16.a.P.horikoshii.fasta -------------------------------------------------- d.16.a.P.furiosus.fasta -------------------------------------------------- d.16.a.T.celer.fasta -------------------------------------------------- d.16.a.A.fulgidus.fasta -------------------------------------------------- d.16.a.N.equitans.fasta -------------------------------------------------- d.16.a.A.pernix.K1.fasta -------------------------------------------------- d.16.a.P.occultum.fasta -------------------------------------------------- d.16.a.T.tenax.fasta -------------------------------------------------- d.16.a.S.acidocaldarius.fasta -------------------------------------------------- d.16.a.S.solfataricus.fasta -------------------------------------------------- d.16.a.S.solfataricus.2.fasta -------------------------------------------------- d.16.a.M.thermautotrophicus.1. -------------------------------------------------- d.16.a.M.thermautotrophicus.2. -------------------------------------------------- d.16.a.M.formicicum.fasta -------------------------------------------------- d.16.a.M.vannielii.fasta -------------------------------------------------- d.16.a.H.marismortui.rrnA.fast -------------------------------------------------- d.16.a.H.marismortui.rrnB.fast -------------------------------------------------- d.16.a.Halobacterium.sp.fasta -------------------------------------------------- d.16.a.N.bangense.fasta -------------------------------------------------- d.16.a.N.innermongoliae.fasta -------------------------------------------------- d.16.a.H.volcanii.fasta -------------------------------------------------- d.16.a.M.hungatei.fasta -------------------------------------------------- d.16.a.P.torridus.fasta -------------------------------------------------- d.16.a.T.acidophilum.fasta -------------------------------------------------- a.16.e.G.ardeae.fasta ------------------------------GGGAGCCGGCGCGAC----- d.16.e.G.intestinalis.fasta ---------------------------GCGGGCGAGCAGCGUGAC----- a.16.e.G.muris.fasta -----------------------------AGGAAAGCA-CGCGAU----- d.16.e.A.bracteata.fasta --------------------------------CGGGUGCUGAAGA----- d.16.e.Glomus.sp.W3349.fasta ----------------UCUG--GAAGGGA-UGUAUUUAUUAGAUAAAAAA d.16.e.S.cerradensis.fasta ----------------UCUG--GAAGGGA-UGUAUUUAUUAGAUAAAAA- a.16.e.G.intraradices.fasta ----------------UCUG--GAAGGGGGUGUAUUUAUUAGAUAAAAAA d.16.e.S.culisetae.fasta ----------------UCUG--GAAGGGG-GGCAUUUAUUAGAUAAAAAA a.16.e.P.balamuthi.fasta ----------------UUUG--GUUYGGA-UGUCCGUUAAUCCUGCGUGG d.16.e.A.flavus.fasta ----------------UUCG--GAAGGGG-UGUAUUUAUUAGAUAAAAAA d.16.e.T.caries.fasta ----------------CUUG--GAAGGGG-UGUAU-UUAUUAGAUAAAAA d.16.e.M.circinelloides.fasta ----------------UUAC--GAAUGGG-UGCACUUAUUAGAU--AAAG d.16.e.M.racemosus.fasta ----------------UUAC--GAAUGGG-UGCACUUAUUAGAU--AAAG d.16.e.R.oryzae.fasta ----------------UUAC--GAAGGGG-UGCACUUAUUAGAU--AAAA a.16.e.M.edulis.fasta ----------------------GGAAAGAGCGCGUUUAUUAGAUC-A-AA a.16.e.P.magellanicus.fasta ----------------------GGAG-GUGCGAUUUUAUCAGUCC-A-AA b.16.e.E.granulosus.fasta CUUGCA-------UGUGGGG--GGGAUGGGUGCACUUAUUAGAUC-AGAA d.16.e.D.melanogaster.fasta ----------------------GGGACGUGUGCUUUUAUUAGGCU-A-AA b.16.e.C.koreana.fasta ----------------------GGAAGGAGCGCUUUUAUUAGAUC-A-AA b.16.e.A.australis.fasta ----------------------GGGACGAGCGCAUUUAUUAGACC-A-AG b.16.e.O.utahensis.fasta ----------------------GGAAGGGACGCUUUUAUUAGAUC-A-AA b.16.e.A.salina.fasta ----------------------GGAAGGGGUGCUUUUAUUAGAUC-A-AG d.16.e.M.musculus.fasta -------------CG-GGGG--GGGAUGCGUGCAUUUAUCAGAUC-A-AA d.16.e.R.norvegicus.fasta -------------CGUGGGG--GGGACGCGUGCAUUUAUCAGAUC-A-AA d.16.e.H.sapiens.fasta -------------CGCGGGG--GGGAUGCGUGCAUUUAUCAGAUC-A-AA d.16.e.O.cuniculus.fasta ----------------GUGU--GGGAUGCGUGCAUUUAUCAGAUC-A-AA d.16.e.X.borealis.fasta -------------------A--GGGAUGCGUGCAUUUAUCAGAUC-A-AA d.16.e.X.laevis.fasta -------------------A--GGGAUGCGUGCAUUUAUCAGACC-A-AA d.16.e.A.castellanii.fasta CGGCCUCGUCCUCGCAUGCG--CAGAGGGAUGUAUUUAUUAGGUU-AAAA d.16.e.B.mandrillaris.fasta UGG---------------------AAGGGAUGUAUUUAUUAGAUA-AAAA d.16.e.P.falciparum.A.fasta --------------------------GAUAAGUAUUUGUUAGGCC-UUA- d.16.e.P.falciparum.S.fasta AUCAUU------------------AAGGUAUGUAUUUGUUAGA----UA- d.16.e.P.vivax.A.fasta ---------------------------GUGUGUACUUGUUAAGCC-UUU- d.16.e.P.vivax.O.fasta ---------------------------GUGCGUACUUGUUAAUUC-GUC- d.16.e.P.vivax.S.fasta ---------------------------GCAUGUACUUGUUAAGCC-UUUA d.16.e.E.histolytica.fasta ----------------------------UACAAAAUGGCCAAUUC-AUUC d.16.e.I.hoferi.fasta -------------------------AGGGUUGUAUUUAUUAGAUA-CAGA d.16.e.Dermocystidium.sp.fasta ------------------------AAGGGAUGUAUUUAUUAGAUA-AAAA d.16.e.S.destruens.fasta ------------------------AAGGGAUGUAUUUAUUAGAUA-AAAA d.16.e.A.unguiculata.fasta -------------------------AGGGCUGUAUUUAUUAGA------- d.16.e.D.grandis.fasta -------------------------AGGGUUGUAUUUAUUAGA------- d.16.e.A.macrogynus.fasta -------------------------AGGGAUGCAGUUAUUAGAUA-CAAA d.16.e.B.emersonii.fasta -------------------------AGGGAUGCAGUUAUUAGAUA-CAAA d.16.e.C.albicans.fasta ------------------------AAGGGAUGUAUUUAUUAGAUA-A--- d.16.e.S.cerevisiae.fasta ------------------------AAGAGAUGUAUUUAUUAGAUA-A--- d.16.e.N.crassa.fasta -------------------------AGGGGUGUAUUUAUUAGAUU-A--- d.16.e.P.anserina.fasta -------------------------AGGGAUGUGUUUAUUAGAUU-A--- d.16.e.C.immitis.fasta -------------------------AGGGGUGUAUUUAUUAGAUA-A--- d.16.e.L.major.fasta -------ACC-AUCG---UC--GUGAGACGCCCAGCGAAUGAAUG-ACAG d.16.e.T.cruzi.fasta -------ACCUGCUG---CC--AUGGGACGUCCAGCGAAUGAAUG-AAAG d.16.e.T.brucei.fasta UUUACGCACUUGUCGUGGCG--AUGAGACGUCCAGCGAAUGAAUG-AAAU d.16.e.P.carinii.fasta ------------------------AAGGGAUGUAUUUAUUAGAUA-A--- d.16.e.C.neoformans.fasta -------------------------AGGGGUGUAUUUAUUAGAUA-A--- d.16.e.Fungus.sp.QPX.fasta -------------------------AGGGGUGUAUUUAUUAGAUA-A--- d.16.e.U.maydis.fasta -------------------------AGGGGUGUAUUUAUUAGAUA-A--- d.16.e.M.leidyi.fasta -------------------------AGGGAUGUAUUUAUUAGAUU-AAAA d.16.e.T.cystophora.fasta -------------------------AGGGAUGUAUUUAUUAGACU-AAAA d.16.e.M.prolifera.fasta -------------------------AGGGAGGUAUUUAUUAGAUC-CAAA d.16.e.P.haeckeli.fasta -------------------------AGGGCCGUAUUUAUUAGAUA-CAAA d.16.e.E.rotunda.fasta -------------------------AGGGAUGUAUUUAUUAGAUA-C--- d.16.e.P.chromatophora.fasta -------------------------ACGGGUGUAUUUAUUAGAUA-A--- d.16.e.A.majus.fasta -----------------------GAAGGGACGCAUUUAUUAGAUA-AAAG d.16.e.S.indicum.fasta -----------------------GAAGGGAUGCAUUUAUUAGAUA-AAAG d.16.e.D.grandiflora.fasta -----------------------GAAGGGAUGCAUUUAUUAGAUA-AAAG d.16.e.Pla.lanceolata.fasta -----------------------GAAGGGAUGCAUUUAUUAGAUA-AAAG d.16.e.N.tabacum.fasta -----------------------GAAGGGAUGCAUUUAUUAGAUA-AAAG d.16.e.A.thaliana.fasta -----------------------GAAGGGACGCAUUUAUUAGAUA-AAAG d.16.e.S.alba.fasta -----------------------GAAGGGAUGCAUUUAUUAGAUA-AAAG d.16.e.S.tuberosum.fasta -----------------------GAAGGGAUGCAUUUAUUAGAUA-AAAG d.16.e.F.x.ananassa.fasta -----------------------GAAGGGAUGCAUUUAUUAGAUA-AAAG d.16.e.G.max.fasta -----------------------GAAGGGAUGCAUUUAUUAGAUA-AAAG d.16.e.O.sativa.fasta -----------------------GGAGGGGCGCAUUUAUUAGAUA-AAAG d.16.e.Z.mays.fasta -----------------------GGAGGGGCGCAUUUAUUAGAUA-AAAG d.16.e.A.verticilliflorum.fast -----------------------GAAGAGGAGCAUUUAUUAGAUA-AGAG d.16.e.G.spirotaenia.fasta -----------------------GAAGGGAUGCAUUUAUUAGAUA-AAAG d.16.e.Staurastrum.sp.M752.fas -----------------------GAAGGGACGCAUUUAUUAGAUA-AAAG d.16.e.C.paradoxa.fasta -----------------------GAAGGGAUGUAUUUAUUAGAUA-AAAA d.16.e.G.nostochinearum.fasta -----------------------GAAGGGAUGUAUUUAUUAGACA-AAAA d.16.e.G.wittrockiana.fasta -----------------------GAAGGGUUGUAUUUAUUAGAGC-AAAA d.16.e.C.luteoviridis.fasta -----------------------GAAGGGGCGUAUUUAUUAGAUA-AAAG d.16.e.O.longa.fasta -------------------A--GGAAGGGCUGUAUUUAUUAGAUA-ACAA d.16.e.P.weissei.fasta -------------------A--GGAAGGGCUGUAUUUAUUAGAUA-ACAA d.16.e.C.citrina.fasta -------------------A--GGAAGGGCUGUAUUUAUUAGAUA-ACAA d.16.e.G.steinii.fasta -------------------A--GGAAGGGCUGUAUUUAUUAGAUA-ACAA d.16.e.Ple.lanceolata.fasta -------------------A--GGAAGGGCUGUAUUUAUUAGAUA-ACAA d.16.e.O.quadricornutus.fasta -------------------A--GGAAGGGCUGUAUUUAUUAGAUA-ACAA d.16.e.S.lemnae.fasta -------------------A--GGAAGGGCUGUAUUUAUUAGAUA-ACAA d.16.e.S.mytilus.fasta -------------------A--GGAAGGGCUGUAUUUAUUAGAUA-ACAA d.16.e.E.mobilis.fasta ----------------------GGAAGGGCUGUAUUUAUUAGAUA-ACAA d.16.e.O.granulifera.1.fasta -------------------U--GGAAGGGCUGUAUUUAUUAGAUA-ACAA d.16.e.O.granulifera.2.fasta ----------------------GGAAGGGCUGUAUUUAUUAGAUA-ACAA d.16.e.U.gallina.fasta -------------------A--GGAAGGGCUGUAUUUAUUAGAUA-ACAA d.16.e.U.pisces.fasta -------------------A--GGAAGGGCUGUAUUUAUUAGAUA-ACAA d.16.e.P.lepisma.fasta -------------------A--GGAAGGGCUGUAUUUAUUAGAUA-ACAA d.16.e.U.grandis.fasta -------------------A--GGAAAGGCUGUAUUUAUUAGAUA-ACAA d.16.e.B.coli.fasta -----------------------GUAAGGUCGUAUUUAUUAGAUA----- d.16.e.E.aediculatus.fasta -------------------C--GGGACCCCAGCGUUUAUUAGAUU--UAA d.16.e.T.thermophila.fasta -------------------C--GACCGGAACGUAUUUAUUAGAUA-UUAG d.16.e.Bangia.sp.NWT.fasta ------------------------AAGGGUGGUAUUUAUUGGAUA-AAAA d.16.e.Bangia.sp.VIS7.fasta -----------------------GAAGGGCUGUAUUUAUUAGAUA-CAAA d.16.e.E.carnea.fasta ------------------------AAGGGUGGCAUUUACUGGACU-CAAA d.16.e.R.parvula.fasta ------------------------AAGGGUGGCAUUUACUGGACU-AAAA d.16.e.C.coeruleus.fasta ------------------------AAGGGUGGUAUUUAUUAGAAU-CAAA d.16.e.P.aerugineum.1.fasta ------------------------RAGGAUGGUAUUUAUUAG--C-CGCA d.16.e.R.maculata.fasta ------------------------AAGGGUGGUAUUUAUUAG-UU-UUAA d.16.e.A.ambigua.fasta ----------------------GGGAGGAUUGUAUUUAUUAGGUUACAAA d.16.e.A.baicalensis.fasta ----------------------GGGAGGAUCGUAUUUAUUAGGUUACAAA d.16.e.S.nipponica.fasta ----------------------GGAAGGGUUGUAUUUAUUAGAUUACAAA d.16.e.C.radiatus.fasta ---------------UGGAU--AGAAGAGAUGCAUUUAUCAGAAC-UAAA d.16.e.C.criophilum.fasta ----------------------GGAAGGGUAGUAUUUAUUAGAUU--GAA d.16.e.A.capitellata.fasta ----------------UUCU--G---GGGUAGUAUUUAUUAGAUG--GAA d.16.e.S.pupula.fasta ----------------CUAU--G---GGGUAGUAUUUAUUAGAUG--GAA d.16.e.T.antarctica.fasta ----------------UUCU--G---GGGUAGUAUUUAUUAGAUU--GAA d.16.e.E.triangulatum.fasta ----------------UUCU--G---GGGUAGUAUUUAUUAGAUU--GAA d.16.e.A.bongranii.fasta ----------------UUCU--G---GGGUAGUAUUUAUUAGAUA--GAA d.16.e.Pseudogomphonema.sp.fas ----------------UUCU--G---GGGUAGUAUUUAUUAGAUG--GAA d.16.e.D.tenue.fasta ----------------UUCU--G---GGGUAGUAUUUAUUAGAUU--GAA d.16.e.G.marina.fasta ----------------UCCU--G---GGGUAGUAUUUAUUAGAUA--GAA d.16.e.Thalassionema.sp.fasta ----------------UU--------GGGUGGCAAUUAUUAGAAA--UAA d.16.e.R.belgicae.fasta ----------------UUUC--GGAAGGGUAGUAUUUAUUAGAUU--GAG d.16.e.Undatella.sp.fasta ----------------AUUC--AUUUGGGUAGUAUUUAUUAGAUU--GAA d.16.e.C.belgica.fasta ---------------UUCGC--GGACGGGUAGUAUUUAUUAGAUA--GAA d.16.e.O.sinensis.fasta ---------------UU-GC--GAAAGGGUUGUAUUUAUUAGAUA--GAA d.16.e.D.brightwellii.fasta ---------------UUCGC--GGAAGGGUAGUAUUUAUUAGAUA--GAA d.16.e.L.undulatum.fasta ---------------CUCGC--GGAAGGGUAGUAUUUAUUAGAUA--GAA d.16.e.T.eccentrica.fasta ---------------UUCGC--GGAAGGGUAGUAUUUAUUAGGUA--UAG d.16.e.T.pseudonana.fasta ---------------UUCGC--GGAAGGGUAGUAUUUAUUAGGUA--UAG d.16.e.S.costatum.fasta ---------------CUCG---GGAACCGCCGUGUUUAUUAGUAU--UAA d.16.e.P.laevis.fasta ---------------UUCGC--GGAAGGGUAGCUUUUAUUAGAUA--GAA d.16.e.L.borealis.fasta ---------------GCUUU--GGAAGGGUUGUAUUUAUUAGGUA--AAA d.16.e.P.pseudodenticulata.fas ---------------AUUUU--GGAAGGGUUGUAUUUAUUAGGUA--AAA d.16.e.B.mediterranea.fasta ---------------CU-----GGACGGGUGGUAUUUAUUAGAUU--GAA d.16.e.B.pacifica.fasta ---------------UUCGC--GGACGGGUGGUAUUUAUUAGAUU--GAA d.16.e.L.minuta.fasta --------------------------GGGCUGUAUUUAUUAGAUA--GAA d.16.e.L.danicus.fasta ----------------UCUG--GGAAGAGCAGUAUUUAUUAGAUU--GAA d.16.e.Chaetoceros.sp.fasta -----------------UUU--GGAAGAGUGGUAUUUAUUAGAUU--GAA d.16.e.A.invadans.fasta ---------------UUGUC--GGACGGGUAGCAUUUAUUAGAUU--GAA d.16.e.L.giganteum.fasta ---------------UUGUC--GGGCGGGUAGCAUUUAUUAGAUU--GAA d.16.e.M.varians.fasta -----------------------GGAAGAUUGUAUUUAUUAGGUA-UCAA d.16.e.B.hominis.fasta -----------------------GGUGAGGUGUGUUUAUUAGAAU--GAA d.16.e.P.marinus.fasta -------------------------AGGGCUGCGUUUAUUAGAUA-CAGA d.16.e.T.gondii.fasta -------------------------AAGGCAGUGUUUAUUAGAUA-CAGA d.16.e.A.fundyense.fasta ------------------------AAAGGUUGUGGUCGUUAGUUA-CAGA d.16.e.B.bigemina.fasta ---------------------------GGCGGCGUUUAUUAGUUC-GUUA d.16.e.B.canis.fasta ---------------------------GGCCGCGUUUAUUAGUU--GUAA d.16.e.Babesia.sp.OKD.fasta ---------------------------GGCGGCGUUUAUUAGUU--CUAA d.16.e.B.microti.1.fasta --------------------------GCGUGGCGUUUAUUAGACU-UU-A d.16.e.B.microti.2.fasta --------------------------GCGUGGCGUUUAUUAGACU-UU-A d.16.e.B.microti.3.fasta --------------------------GCGUGGCGUUUAUUAGACU-UU-A d.16.e.B.microti.4.fasta --------------------------GCGUGGCGUUUAUUAGACU-UU-A d.16.e.B.microti.5.fasta --------------------------GCGUGGCGUUUAUUAGACU-UU-A d.16.e.B.rodhaini.fasta --------------------------ACGCAGCGUUUAUUAGACU-A--A d.16.e.B.gibsoni.fasta --------------------------GGACUGCGUUUAUUAGACU-CGAA d.16.e.B.bovis.fasta ----------------------------ACCGCGUUUACUGGUCU-U--- d.16.e.J.libera.fasta ------------------------UGG-GAGGCGUUUAUUAGAUU-CA-- d.16.e.R.americana.fasta ------------------------UGGAGAGGCAUUUAUUAGAUA-CU-- d.16.e.B.ostreae.fasta ------------------------GGCGGGAGUGCAUAUUAGCUG--AAA d.16.e.A.dasyae.fasta ------------------------UC--GUGGUACCAAUCAGAUAUCAA- d.16.e.A.hermannii.fasta ------------------------CC--GUGGUACCAAUCAGAUAUCAA- d.16.e.N.helminthoides.fasta ------------------------CC--GUGGUACAAAUCAGAUAUCAA- d.16.e.B.gelatinosum.fasta ------------------------CC--GUGGUACCAAUCAGAUAUCAA- d.16.e.N.tortuosa.fasta ------------------------CC--GUGGUACCAAUUAGAUAUCAA- d.16.e.T.hispida.fasta ------------------------CC--GUGGUACCAAUUAGAUAUCAA- d.16.e.T.violacea.4.fasta ------------------------CC--GUGGUACCAAUUAGAUAUCAA- d.16.e.T.violacea.1.fasta ------------------------CC--GUGGUACCAAUUAGAUAUCAA- d.16.e.T.violacea.2.fasta ------------------------CC--GUGGUACCAAUUAGAUAUCAA- d.16.e.N.shawii.fasta ------------------------CC--GUGGUACCAAUUAGAUAUCAA- d.16.e.B.investiens.fasta ------------------------CC--GUGGUACAAAUCAGAUAUCAA- d.16.e.B.macrosporum.fasta ------------------------CC--GUGGUACGAAUCAGAUAUCAA- d.16.e.A.plicata.fasta ------------------------CC--GUGGUACAAGUUAGAUAACAG- d.16.e.C.officinalis.fasta ------------------------UCAGGCAGUGCCGUUUAGAUAACAAC d.16.e.R.carriebowensis.fasta ------------------------CUCCGUGGUGCCAAUUAGAUAACAAC d.16.e.B.hamifera.fasta ---------------------------CGUGGUACAAAUUGGAUAUACAA d.16.e.G.vagum.fasta -------------------------GUCGUGGUAUAAAUUGGAGAUACAA d.16.e.C.crispus.fasta ------------------------UGUCGUGGUAUAAAUUGGAGAUACAA d.16.e.H.plana.fasta -------------------------GUCGUGGUAUAAAUUGGAGAUACAA d.16.e.R.leptophylla.fasta -------------------------GUCGUGGUAUAAAUUGGAGAUACAA d.16.e.P.pulvinata.fasta -------------------------ACCGUGGUAUAAAUUGGAGAUACAA d.16.e.C.rubrum.fasta ------------------------CCUCGUGGUACUAAUUGGAGAUACAA d.16.e.Gracilariopsis.sp.fasta -------------------------GUCGUGGUACAAAUUAGAUACACAA d.16.e.B.moritziana.fasta ------------------------UCUCGUGGUACAAAAUAGAGAUACAA d.16.e.H.rubra.fasta ---------------------------CGCGGUACAAAUUGGAGACACAA d.16.e.D.grisea.fasta ------------------------UAGGGUGGUAUUUGUUUGAUGUAAAC d.16.e.N.fowleri.fasta CUAUUGUAACUCAGUUUCUCUGGGUAUAGCAAUAUAUUCAGGGGAGCUGG d.16.e.N.gruberi.fasta CUAUUGUAACCUAGUUUUUC-GGGUGUGGCAACAUAUUCGGGGGA-UUAG a.16.e.Hexamita.sp.fasta ------------------------AGUGAGAGCGAUCUCGGGUU------ d.16.e.T.foetus.fasta -------------------------GCGAUUGUUUCACUGAGUU------ d.16.e.A.khaliulini.fasta ------------------------------------AUUGAUGG------ d.16.e.E.aedis.fasta ------------------------------------UAUAGUGG------ d.16.e.A.connecticus.fasta ------------------------------------GUAUUAGG------ d.16.e.I.barri.fasta ------------------------------------GAGAGUGG------ d.16.e.A.ferocious.fasta ------------------------------------GGUAGUGG------ d.16.e.Amblyospora.sp.fasta ------------------------------------UAUUGUGG------ d.16.e.C.lunata.fasta ------------------------------------UAAUUUGG------ d.16.e.P.anophelis.fasta ------------------------------------GAAGUGCG------ d.16.e.Hazardia.sp.fasta ------------------------------------GAGCGUGG------ d.16.e.H.milleri.fasta ------------------------------------GAUCGUGG------ d.16.e.P.simulii.fasta -------------------------GGUGUAGCAUUGCUUGUGA------ d.16.e.W.palustris.fasta -------------------------AACAGGACAUUGAUGGUGA------ d.16.e.Nosema.sp.03.fasta -------------------------------GUAACAAUAAUAC------ d.16.e.Nosema.sp.05.fasta -------------------------------GUAACAAUAAUAC------ d.16.e.Endoreticulatus.sp.fast -------------------------------GUAACAAUAAUAC------ d.16.e.Nosema.sp.02.fasta -------------------------------GUAACAAUAAUAC------ d.16.e.N.spodopterae.fasta -------------------------------GUAACAAUAAUAC------ d.16.e.N.trichoplusiae.fasta -------------------------------GUAACAAUAAUAC------ d.16.e.N.bombycis.27.fasta -------------------------------GUAACAAUAAUAC------ d.16.e.N.bombycis.02.fasta -------------------------------GUAACAAUAAUAC------ d.16.e.V.imperfecta.fasta -------------------------------GUAACAAUAAUAC------ d.16.e.N.furnacalis.fasta -------------------------------AUAACAAUAAUAC------ d.16.e.Microsporidium57864.fas -------------------------------AUAAGAUGUGUAC------ d.16.e.Vairimorpha.sp.C21.fast -------------------------------AUAAGAUGUGUAC------ d.16.e.N.oulemae.fasta -------------------------------AUAAAAUGUGUAC------ d.16.e.N.necatrix.fasta -------------------------------AUAAGACAUAUAC------ d.16.e.V.necatrix.fasta -------------------------------AUAAGACAUAUAC------ d.16.e.N.apis.fasta -------------------------------CUAACAUAUGUAC------ d.16.e.O.occidentalis.fasta -------------------------------AUAAUACGUGUAC------ d.16.e.Microsporidium.sp.DP119 -------------------------------CUAAUAAUU-UAG------ d.16.e.V.corneae.fasta -------------------------------UAAGGGAAGGCAG------ d.16.e.A.michaelis.fasta -------------------------------GUUUUUUAGAGGA------ d.16.e.T.contejeani.fasta ------------------------------UAAAGCUAUUGUAG------ d.16.e.E.hellem.fasta -------------------------CUGGGUGUGGUAGUUUUUA------ d.16.e.Encephalitozoon.sp.fast ----------------------------GGGCUAGGAGUGUUU------- d.16.e.E.cuniculi.fasta ----------------------------GGUCUGCCCCUGUGGG------ d.16.e.O.colligata.fasta -------------------------UGCGGAGAAGUGAUUUUUGA----- d.16.e.E.salmonis.fasta -------------------------------CUAAGAGACCAGA------ d.16.e.N.salmonis.fasta -------------------------------CUAAGAGACCAGA------ d.16.e.Enterocytozoonidae.sp.f -------------------------------CUAAGAGACCAGA------ d.16.e.E.bieneusi.fasta -------------------------------CUAAAAGCGGAGA------ d.16.e.B.algerae.fasta ------------------------------UUUUGUGAAGAAAGG----- d.16.e.T.solenopsae.fasta ------------------------------AAGCAUGAAAGCGGA----- d.16.e.V.acridophagus.fasta ------------------------------UUUCAUGAAAGAAUU----- d.16.e.Bacillidium.sp.fasta -------------------------GAAAAUUAGAGGGGGGCACC----- d.16.e.P.cristatellae.fasta -------------------------AUAGAUGAAACAGCGAUAAC----- d.16.e.Pleistophora.sp.fasta -------------------------------UAAGAGGGGACAG------ d.16.e.O.operophterae.fasta -------------------------------CUAAGAGCGCGGA------ d.16.e.F.magnivora.fasta -------------------------------CUAAUAACACGAG------ d.16.e.G.atherinae.fasta -------------------------CGAGG-UCGUUCGUUUAACG----- d.16.e.Ichthyosporidium.sp.fas -------------------------UAAGGAUUGUUCGUUUAAC------ d.16.e.L.acerinae.fasta -------------------------CGCAGCCCGUGGGUGUAAC------ d.16.e.H.anguillarum.fasta -------------------------GUGGUGGUGUGCCGAAAGC------ d.16.e.P.mirandellae.fasta -------------------------UUGGUGGGGUGUCAAUAGCU----- d.16.e.T.hominis.fasta ---------------------------AGAGACGGUGCGAGAACC----- d.16.e.V.culicis.fasta ---------------------------GGGCACGGGCGUGCAACC----- d.16.e.P.hippoglossoideos.fast ---------------------------GGAGAUGCCCCGAGAAC------ d.16.e.Microgemma.sp.fasta -------------------------AU--GCAUGUGAUGAUAACG----- d.16.e.S.lophii.fasta -------------------------GUUAGCAUGUGAUGAGAACA----- d.16.e.Pleistophora.sp.LS.fast -------------------------------------------------- d.16.e.D.gammarellum.fasta --------------------------GAAUUCUGUGGUAGAAAGA----- d.16.e.M.prosopium.fasta ---------------------------AAAGAUGCCUAGACAACC----- d.16.e.A.scoticae.fasta --------------------------AGGCUGUGUUGCGGGGAGG----- d.16.e.P.whitei.fasta --------------------------AGGCUGCAGCGCGGGGAGG----- a.16.c.C.coccineum.fasta -------------------------------------------------- a.16.c.C.ruber.fasta -------------------------------------------------- d.16.c.N.tabacum.fasta -------------------------------------------------- d.16.c.S.oleracea.fasta -------------------------------------------------- d.16.c.Z.mays.fasta -------------------------------------------------- d.16.c.M.polymorpha.fasta -------------------------------------------------- d.16.c.R.communis.fasta -------------------------------------------------- d.16.c.C.vulgaris.fasta -------------------------------------------------- d.16.c.P.wickerhamii.fasta -------------------------------------------------- d.16.c.P.minor.fasta -------------------------------------------------- d.16.c.N.olivacea.fasta -------------------------------------------------- d.16.c.P.parkeae.fasta -------------------------------------------------- d.16.c.C.reinhardtii.fasta -------------------------------------------------- b.16.m.A.castellanii.fasta -------------------------------------------------- d.16.c.P.thurberi.fasta -------------------------------------------------- b.16.m.C.crispus.fasta -------------------------------------------------- d.16.c.T.gondii.fasta -------------------------------------------------- b.16.m.N.crassa.fasta -------------------------------------------------- b.16.m.P.anserina.fasta -------------------------------------------------- b.16.m.P.chrysogenum.fasta -------------------------------------------------- b.16.m.E.nidulans.fasta -------------------------------------------------- b.16.m.S.cerevisiae.fasta -------------------------------------------------- b.16.m.W.saturnus.m.fasta -------------------------------------------------- b.16.m.P.minor.fasta -------------------------------------------------- d.16.c.P.falciparum.fasta -------------------------------------------------- d.16.c.B.bovis.fasta -------------------------------------------------- b.16.m.T.pyriformis.fasta -------------------------------------------------- d.16.m.S.sinuspaulianus.fasta -------------------------------------------------- b.16.m.P.tetraurelia.fasta -------------------------------------------------- b.16.m.D.discoideum.fasta -------------------------------------------------- d.16.m.P.polycephalum.fasta -------------------------------------------------- b.16.m.P.littoralis.fasta -------------------------------------------------- b.16.m.P.wickerhamii.fasta -------------------------------------------------- d.16.c.H.africana.fasta -------------------------------------------------- d.16.c.C.fragile.fasta -------------------------------------------------- d.16.c.C.sertularioides.fasta -------------------------------------------------- d.16.c.C.humicola.fasta -------------------------------------------------- d.16.c.P.uvella.fasta -------------------------------------------------- a.16.c.G.nostochinearum.fasta -------------------------------------------------- a.16.c.G.wittrockiana.fasta -------------------------------------------------- d.16.c.C.paradoxa.fasta -------------------------------------------------- d.16.y.C.paradoxa.fasta -------------------------------------------------- d.16.c.Cryptomonas.sp.fasta -------------------------------------------------- d.16.c.P.palmata.fasta -------------------------------------------------- d.16.c.H.akashiwo.fasta -------------------------------------------------- d.16.c.S.pseudocostatum.fasta -------------------------------------------------- d.16.c.P.littoralis.fasta -------------------------------------------------- d.16.c.C.caldarium.fasta -------------------------------------------------- a.16.c.E.huxleyi.fasta -------------------------------------------------- d.16.c.E.gracilis.fasta -------------------------------------------------- d.16.b.Anabaena.sp.fasta -------------------------------------------------- d.16.b.Chlorogloeopsis.PCC7518 -------------------------------------------------- d.16.b.Synechococcus.sp.fasta -------------------------------------------------- d.16.b.Synechocystis.PCC6803.G -------------------------------------------------- d.16.b.O.agardhii.fasta -------------------------------------------------- d.16.b.Pleurocapsa.7516.fasta -------------------------------------------------- d.16.b.M.aeruginosa.fasta -------------------------------------------------- b.16.m.C.reinhardtii.fasta -------------------------------------------------- d.16.m.C.eugametos.fasta -------------------------------------------------- b.16.m.M.senile.fasta -------------------------------------------------- d.16.b.S.pneumoniae.fasta -------------------------------------------------- d.16.b.S.pyogenes.fasta -------------------------------------------------- d.16.b.B.anthracis.fasta -------------------------------------------------- d.16.b.B.cereus.1.fasta -------------------------------------------------- d.16.b.E.faecalis.fasta -------------------------------------------------- d.16.b.E.faecium2.fasta -------------------------------------------------- d.16.b.L.monocytogenes.fasta -------------------------------------------------- d.16.b.B.subtilis.fasta -------------------------------------------------- d.16.b.B.subtilis.GEN.fasta -------------------------------------------------- d.16.b.B.halodurans.fasta -------------------------------------------------- d.16.b.S.aureus.fasta -------------------------------------------------- d.16.b.S.aureus.GEN.fasta -------------------------------------------------- d.16.b.L.lactis.GEN.fasta -------------------------------------------------- d.16.b.S.pyogenes.GEN.fasta -------------------------------------------------- d.16.b.L.acidophilus.fasta -------------------------------------------------- d.16.b.M.capricolum.fasta -------------------------------------------------- d.16.b.M.mycoides.fasta -------------------------------------------------- d.16.b.E.rhusiopathiae.fasta -------------------------------------------------- d.16.b.C.innocuum.fasta -------------------------------------------------- d.16.b.M.genitalium.fasta -------------------------------------------------- d.16.b.M.pneumoniae.GEN.fasta -------------------------------------------------- d.16.b.M.pneumoniae.fasta -------------------------------------------------- d.16.b.M.gallisepticum.fasta -------------------------------------------------- d.16.b.U.urealyticum.fasta -------------------------------------------------- d.16.b.U.urealyticum.GEN.fasta -------------------------------------------------- d.16.b.M.hyopneumoniae.fasta -------------------------------------------------- d.16.b.F.necrophorum.fasta -------------------------------------------------- d.16.b.F.nucleatum.fasta -------------------------------------------------- d.16.b.S.moniliformis.fasta -------------------------------------------------- d.16.b.C.botulinum.F.fasta -------------------------------------------------- d.16.b.C.tetani.fasta -------------------------------------------------- d.16.b.C.perfringens.fasta -------------------------------------------------- d.16.b.C.difficile.fasta -------------------------------------------------- d.16.b.E.brachy.fasta -------------------------------------------------- d.16.b.Epulopiscium.sp.fasta -------------------------------------------------- d.16.b.H.chlorum.fasta -------------------------------------------------- b.16.m.G.max.fasta -------------------------------------------------- b.16.m.O.berteriana.fasta -------------------------------------------------- b.16.m.S.cereale.fasta -------------------------------------------------- b.16.m.T.aestivum.fasta -------------------------------------------------- d.16.m.Z.mays.fasta -------------------------------------------------- b.16.m.M.polymorpha.fasta -------------------------------------------------- b.16.m.N.olivacea.fasta -------------------------------------------------- d.16.b.G.liquefaciens.fasta -------------------------------------------------- d.16.b.B.japonicum.fasta -------------------------------------------------- d.16.b.R.acidophilus.fasta -------------------------------------------------- d.16.b.A.caulinodans.fasta -------------------------------------------------- d.16.b.B.quintana.fasta -------------------------------------------------- d.16.b.M.loti.fasta -------------------------------------------------- d.16.b.A.tumefaciens.fasta -------------------------------------------------- d.16.b.B.bacilliformis.fasta -------------------------------------------------- d.16.b.B.henselae.fasta -------------------------------------------------- d.16.b.B.melitensis.fasta -------------------------------------------------- d.16.b.R.orientis.fasta -------------------------------------------------- d.16.b.Methylobacterium.sp.fas -------------------------------------------------- d.16.b.R.bellii.fasta -------------------------------------------------- d.16.b.R.felis.URRWXCal2.fasta -------------------------------------------------- d.16.b.R.prowazekii.fasta -------------------------------------------------- d.16.b.R.prowazekii.GEN.fasta -------------------------------------------------- d.16.b.R.rickettsii.fasta -------------------------------------------------- d.16.b.A.calcoaceticus.fasta -------------------------------------------------- d.16.b.P.pacificensis.fasta -------------------------------------------------- d.16.b.C.marismortui.fasta -------------------------------------------------- d.16.b.H.halodenitrificans.fas -------------------------------------------------- d.16.b.P.aeruginosa.fasta -------------------------------------------------- d.16.b.P.aeruginosa.GEN.fasta -------------------------------------------------- d.16.b.Pseudomonas.sp.fasta -------------------------------------------------- d.16.b.P.putida.fasta -------------------------------------------------- d.16.b.C.burnetii.fasta -------------------------------------------------- d.16.b.M.capsulatus.fasta -------------------------------------------------- d.16.b.L.pneumophila.1.fasta -------------------------------------------------- d.16.b.L.pneumophila.2.fasta -------------------------------------------------- d.16.b.A.vinosum.fasta -------------------------------------------------- d.16.b.Beggiatoa.sp.fasta -------------------------------------------------- d.16.b.A.hydrophila.fasta -------------------------------------------------- d.16.b.S.putrefaciens.fasta -------------------------------------------------- d.16.b.C.freundii.fasta -------------------------------------------------- d.16.b.S.dysenteriae.1.fasta -------------------------------------------------- d.16.b.K.pneumoniae.fasta -------------------------------------------------- d.16.b.P.shigelloides.fasta -------------------------------------------------- d.16.b.Y.pestis.fasta -------------------------------------------------- d.16.b.Y.pseudotuberculosis.fa -------------------------------------------------- d.16.b.S.dysenteriae.2.fasta -------------------------------------------------- d.16.b.E.coli.0157G.GEN.fasta -------------------------------------------------- d.16.b.E.coli.EDL.GEN.fasta -------------------------------------------------- d.16.b.E.coli.fasta -------------------------------------------------- d.16.b.E.coli.K12.GEN.fasta -------------------------------------------------- h.16.b.E.coli.hlxnum.fasta -------------------------------------------------- m.16.b.E.coli.mhg.fasta -------------------------------------------------- s.16.b.E.coli.schem.fasta -------------------------------------------------- d.16.b.S.typhimurium.fasta -------------------------------------------------- d.16.b.S.marcescens.fasta -------------------------------------------------- d.16.b.E.tarda.fasta -------------------------------------------------- d.16.b.P.vulgaris.fasta -------------------------------------------------- d.16.b.V.cholerae4.fasta -------------------------------------------------- d.16.b.V.cholerae5.fasta -------------------------------------------------- d.16.b.V.cholerae2.fasta -------------------------------------------------- d.16.b.V.cholerae6.fasta -------------------------------------------------- d.16.b.V.cholerae.fasta -------------------------------------------------- d.16.b.V.cholerae.GEN.fasta -------------------------------------------------- d.16.b.V.parahaemolyticus.fast -------------------------------------------------- d.16.b.H.influenzae7.fasta -------------------------------------------------- d.16.b.H.influenzae8.fasta -------------------------------------------------- d.16.b.H.influenzae6.fasta -------------------------------------------------- d.16.b.H.influenz.fasta -------------------------------------------------- d.16.b.H.influenzae.fasta -------------------------------------------------- d.16.b.P.multocida.fasta -------------------------------------------------- d.16.b.P.multocida.GEN.fasta -------------------------------------------------- d.16.b.X.albilineans.fasta -------------------------------------------------- d.16.b.X.campestris.fasta -------------------------------------------------- d.16.b.X.fastidiosa.GEN.fasta -------------------------------------------------- d.16.b.D.nodosus.fasta -------------------------------------------------- d.16.b.F.tularensis.fasta -------------------------------------------------- d.16.b.B.parapertussis.fasta -------------------------------------------------- d.16.b.B.pertussis.fasta -------------------------------------------------- d.16.b.B.bronchiseptica2.fasta -------------------------------------------------- d.16.b.u.proteobacterium.fasta -------------------------------------------------- d.16.b.B.mallei.fasta -------------------------------------------------- d.16.b.Burkholderia.sp.fasta -------------------------------------------------- d.16.b.N.meningitidis.MD58.GEN -------------------------------------------------- d.16.b.N.meningitidis.Z2491.GE -------------------------------------------------- d.16.b.N.gonorrhoeae.fasta -------------------------------------------------- d.16.b.C.testosteroni.fasta -------------------------------------------------- d.16.b.D.desulfuricans.fasta -------------------------------------------------- d.16.b.M.xanthus.fasta -------------------------------------------------- d.16.b.D.thermophilus.fasta -------------------------------------------------- d.16.b.B.burgdorferi.fasta -------------------------------------------------- d.16.b.B.burgdorferi.GEN.fasta -------------------------------------------------- d.16.b.B.hermsii.fasta -------------------------------------------------- d.16.b.S.aurantia.fasta -------------------------------------------------- d.16.b.T.pallidum.A.fasta -------------------------------------------------- d.16.b.L.illini.fasta -------------------------------------------------- d.16.b.L.interrogans.fasta -------------------------------------------------- d.16.b.C.trachomatis.GEN.fasta -------------------------------------------------- d.16.b.C.trachomatis.L2.fasta -------------------------------------------------- d.16.b.C.muridarum.fasta -------------------------------------------------- d.16.b.C.pneumoniae.AR39.fasta -------------------------------------------------- d.16.b.C.pneumoniae.fasta -------------------------------------------------- d.16.b.C.pneumoniae.J138.fasta -------------------------------------------------- d.16.b.C.pneumoniae.CWL029.fas -------------------------------------------------- d.16.b.C.psittaci.fasta -------------------------------------------------- d.16.b.D.radiodurans.1.fasta -------------------------------------------------- d.16.b.D.radiodurans.GEN.fasta -------------------------------------------------- d.16.b.B.fragilis.fasta -------------------------------------------------- d.16.b.P.gingivalis.fasta -------------------------------------------------- d.16.b.C.vibrioforme.fasta -------------------------------------------------- d.16.b.C.jejuni.fasta -------------------------------------------------- d.16.b.C.jejuni.GEN.fasta -------------------------------------------------- d.16.b.C.sputorum.fasta -------NNNNNNNNNNNNNNNNNNNNNNNNNNNAGUGAACNCUGGCGGC d.16.b.H.pylori.26695.GEN.fast -------------------------------------------------- d.16.b.H.pylori.J99.GEN.fasta -------------------------------------------------- d.16.b.H.pylori2.fasta -------------------------------------------------- d.16.b.A.capsulatum.fasta -------------------------------------------------- d.16.b.H.foetida.fasta -------------------------------------------------- d.16.b.A.globiformis.fasta -------------------------------------------------- d.16.b.M.luteus.fasta -------------------------------------------------- d.16.b.Frankia.sp.fasta -------------------------------------------------- d.16.b.S.bottropensis.fasta -------------------------------------------------- d.16.b.S.scabiei.fasta -------------------------------------------------- d.16.b.S.neyagawaensis.fasta -------------------------------------------------- d.16.b.S.diastatochromogenes.f -------------------------------------------------- d.16.b.Streptomyces.sp.fasta -------------------------------------------------- d.16.b.S.acidiscabies.fasta -------------------------------------------------- d.16.b.S.griseus.fasta -------------------------------------------------- d.16.b.S.ornatus.fasta -------------------------------------------------- d.16.b.S.subrutilus.fasta -------------------------------------------------- d.16.b.S.bikiniensis.fasta -------------------------------------------------- d.16.b.S.galbus.fasta -------------------------------------------------- d.16.b.S.hygroscopicus.fasta -------------------------------------------------- d.16.b.S.lincolnensis.fasta -------------------------------------------------- d.16.b.S.coelicolor.fasta -------------------------------------------------- d.16.b.S.tendae.fasta -------------------------------------------------- d.16.b.S.ambofaciens.fasta -------------------------------------------------- d.16.b.S.eurythermus.fasta -------------------------------------------------- d.16.b.S.nodosus.fasta -------------------------------------------------- d.16.b.S.sampsonii.fasta -------------------------------------------------- d.16.b.S.glaucescens.fasta -------------------------------------------------- d.16.b.S.pseudogriseolus.fasta -------------------------------------------------- d.16.b.S.caelestis.fasta -------------------------------------------------- d.16.b.S.bluensis.fasta -------------------------------------------------- d.16.b.S.espinosus.fasta -------------------------------------------------- d.16.b.S.mashuensis.fasta -------------------------------------------------- d.16.b.S.rimosus.fasta -------------------------------------------------- d.16.b.S.limosus.fasta -------------------------------------------------- d.16.b.S.odorifer.fasta -------------------------------------------------- d.16.b.S.felleus.fasta -------------------------------------------------- d.16.b.S.albidoflavus.fasta -------------------------------------------------- d.16.b.S.gougerotii.fasta -------------------------------------------------- d.16.b.S.rutgersensis.fasta -------------------------------------------------- d.16.b.S.intermedius.fasta -------------------------------------------------- d.16.b.S.thermodiastaticus.fas -------------------------------------------------- d.16.b.S.thermoviolaceus.fasta -------------------------------------------------- d.16.b.S.thermovulgaris.1.fast -------------------------------------------------- d.16.b.S.thermovulgaris.2.fast -------------------------------------------------- d.16.b.S.macrosporus.fasta -------------------------------------------------- d.16.b.S.megasporus.fasta -------------------------------------------------- d.16.b.S.thermolineatus.fasta -------------------------------------------------- d.16.b.M.tuberculosis.2.fasta -------------------------------------------------- d.16.b.M.tuberculosis.3.fasta -------------------------------------------------- d.16.b.M.avium.fasta -------------------------------------------------- d.16.b.M.leprae.fasta -------------------------------------------------- d.16.b.M.leprae.GEN.fasta -------------------------------------------------- d.16.b.M.tuberculosis.CDC1551. -------------------------------------------------- d.16.b.M.tuberculosis.GEN.fast -------------------------------------------------- d.16.b.N.asteroides.fasta -------------------------------------------------- d.16.b.R.erythropolis.fasta -------------------------------------------------- d.16.b.C.diphtheriae.fasta -------------------------------------------------- d.16.b.A.israelii.fasta -------------------------------------------------- d.16.b.B.hyodysenteriae.fasta -------------------------------------------------- d.16.b.G.subterranea.fasta -------------------------------------------------- d.16.b.P.miotherma.fasta -------------------------------------------------- d.16.b.B.andersonii.fasta -------------------------------------------------- d.16.b.H.aurantiacus.fasta -------------------------------------------------- d.16.b.Leptospirillium.sp.fast -------------------------------------------------- d.16.b.A.aeolicus.fasta -------------------------------------------------- d.16.b.A.pyrophilus.fasta -------------------------------------------------- d.16.b.T.maritima.fasta -------------------------------------------------- d.16.b.T.maritima.GEN.fasta -------------------------------------------------- n.16.b.T.thermophilus.2.num.fa -------------------------------------------------- s.16.b.T.thermophilus.2.schem. -------------------------------------------------- d.16.b.T.thermophilus.2.fasta -------------------------------------------------- s.16.b.T.thermophilus.1.schem. -------------------------------------------------- n.16.b.T.thermophilus.1.num.fa -------------------------------------------------- d.16.b.T.thermophilus.1.fasta -------------------------------------------------- d.16.b.T.aquaticus.fasta -------------------------------------------------- d.16.b.T.roseum.fasta -------------------------------------------------- d.16.b.P.marina.fasta -------------------------------------------------- d.16.b.P.staleyi.fasta -------------------------------------------------- d.16.b.P.Schlesner.fasta -------------------------------------------------- d.16.b.G.obscuriglobus.1.fasta -------------------------------------------------- d.16.b.I.pallida.fasta -------------------------------------------------- d.16.a.P.abyssi.fasta -------------------------------------------------- d.16.a.P.horikoshii.fasta -------------------------------------------------- d.16.a.P.furiosus.fasta -------------------------------------------------- d.16.a.T.celer.fasta -------------------------------------------------- d.16.a.A.fulgidus.fasta -------------------------------------------------- d.16.a.N.equitans.fasta -------------------------------------------------- d.16.a.A.pernix.K1.fasta -------------------------------------------------- d.16.a.P.occultum.fasta -------------------------------------------------- d.16.a.T.tenax.fasta -------------------------------------------------- d.16.a.S.acidocaldarius.fasta -------------------------------------------------- d.16.a.S.solfataricus.fasta -------------------------------------------------- d.16.a.S.solfataricus.2.fasta -------------------------------------------------- d.16.a.M.thermautotrophicus.1. -------------------------------------------------- d.16.a.M.thermautotrophicus.2. -------------------------------------------------- d.16.a.M.formicicum.fasta -------------------------------------------------- d.16.a.M.vannielii.fasta -------------------------------------------------- d.16.a.H.marismortui.rrnA.fast -------------------------------------------------- d.16.a.H.marismortui.rrnB.fast -------------------------------------------------- d.16.a.Halobacterium.sp.fasta -------------------------------------------------- d.16.a.N.bangense.fasta -------------------------------------------------- d.16.a.N.innermongoliae.fasta -------------------------------------------------- d.16.a.H.volcanii.fasta -------------------------------------------------- d.16.a.M.hungatei.fasta -------------------------------------------------- d.16.a.P.torridus.fasta -------------------------------------------------- d.16.a.T.acidophilum.fasta -------------------------------------------------- a.16.e.G.ardeae.fasta -------------------------------------------------- d.16.e.G.intestinalis.fasta -------------------------------------------------- a.16.e.G.muris.fasta -------------------------------------------------- d.16.e.A.bracteata.fasta -------------------------------------------------- d.16.e.Glomus.sp.W3349.fasta ---CCAACAGCUGGGAAACCGAC---------------------UAAACC d.16.e.S.cerradensis.fasta ---CCAAUAACC-----UUCGGG---------------------UUUCAC a.16.e.G.intraradices.fasta ---CCAAUAUCGGGCA-ACCGAU---------------------U--CCC d.16.e.S.culisetae.fasta ---CCAAUGGGG-----GCAACC---------------------UCUUAC a.16.e.P.balamuthi.fasta ---CCAGCGGCUU----U-GGGA---------------------CUCCAG d.16.e.A.flavus.fasta ---CCAAUGCCCU----UCGGGG---------------------CUCCUU d.16.e.T.caries.fasta ---CCAAC--CCU----UCGGGU---------------------CCCUUG d.16.e.M.circinelloides.fasta ---CCAACGCUGGGUAAAACCAG---------------------UUUCCC d.16.e.M.racemosus.fasta ---CCAACGCUGGGUAAAACCAG---------------------UUUCCC d.16.e.R.oryzae.fasta ---CCAACGCGGGGUAAAACCUG---------------------UUUC-- a.16.e.M.edulis.fasta --ACCAGUCGGGUCCG------------------CAAGGGC-CCGUCGGA a.16.e.P.magellanicus.fasta --ACCAAUCGG--UCG------------------CAAGG---CCGUCACU b.16.e.E.granulosus.fasta --GCCAACCAACUGUGCGGGUGCA--GCUCACUGCGAGGUGGACGUCGCG d.16.e.D.melanogaster.fasta --ACCAAGCGAUCG--------------------CAAGAU---CGUUAUA b.16.e.C.koreana.fasta --GCCAAUCGAACUCU------------------CGGGUU---CGUUUAA b.16.e.A.australis.fasta --ACCAAUCGGACUU---------------------AGGU--CCGCAAAC b.16.e.O.utahensis.fasta --ACCGAUCGGCGUCCGGUUCGC-----------CGGCGC---CGUCUCU b.16.e.A.salina.fasta --ACCAAUCGG-------------------------GGCU--UCGGCUCG d.16.e.M.musculus.fasta --ACCAACCCGGUGAGCUCCCUCCCGGCUCCGGCCGGGGGUCGGGCGCCG d.16.e.R.norvegicus.fasta --ACCAACCCGGUCAGCCCCCUCCCGGCUCCGGCCGGGGGUCGGGCGCCG d.16.e.H.sapiens.fasta --ACCAACCCGGUCAGCCCCUCUCCGGCCCCGGCCGGGGGGCGGGCGCCG d.16.e.O.cuniculus.fasta --ACCAACCCGGUCAGCCUCCC-----CGCCGGCCGGGGGGGUGGGGC-G d.16.e.X.borealis.fasta --ACCAACCCGG--GGCCCCC---------------------GCGCCCCG d.16.e.X.laevis.fasta --ACCAAUCCGG--GGCCCCC---------------------GCGCCCCG d.16.e.A.castellanii.fasta --ACCAGCAGCCGGCAAC---------------------GGCUUCAACUC d.16.e.B.mandrillaris.fasta --ACCGAUGCAGGGUGGCUUGCU----------------GCCCUGACCCA d.16.e.P.falciparum.A.fasta ---UAAGAAAAAAGUUAU--------------------------UAACU- d.16.e.P.falciparum.S.fasta ---UAAGAAUAAAAUAAA--------------------------UA--U- d.16.e.P.vivax.A.fasta ---UAAGAAAAAAGUUAU--------------------------UAACU- d.16.e.P.vivax.O.fasta ---UAAGAAGAAAGUUUUA------------------------AUAGCU- d.16.e.P.vivax.S.fasta ---UAAGAAAAAAGUUAA--------------------------UAACU- d.16.e.E.histolytica.fasta ---AAUGAAUUGAGAAAUG------------------------ACAUUC- d.16.e.I.hoferi.fasta --ACCACUGCAGGGCAACC----------------------UGGUUACU- d.16.e.Dermocystidium.sp.fasta --ACCAAUGCGGGCUCUUGU-------------------GGUCCGGUUCU d.16.e.S.destruens.fasta --ACCAAUGCGAG---UUAA-------------------CCCUCGGUUUC d.16.e.A.unguiculata.fasta ---UAAAAAACCAAUAUU--------------------------UGUGU- d.16.e.D.grandis.fasta ---UAAAAAACCAACAUU--------------------------UUUCU- d.16.e.A.macrogynus.fasta --ACCAACCC-GGGCAACCGG---------------------UUUUU--- d.16.e.B.emersonii.fasta --ACCAGCCCCGGGCAACCGG---------------------GUUUUCUG d.16.e.C.albicans.fasta ----AAAAUCAAUGCCUUC------------------------------- d.16.e.S.cerevisiae.fasta ----AAAAUCAAUGUCUUC------------------------------- d.16.e.N.crassa.fasta ----AAAACCAAUGCCCUU-----------------------------CG d.16.e.P.anserina.fasta ----AAAACCAAUGCCCUC-----------------------------CG d.16.e.C.immitis.fasta ----AAAACCAAUGCCCUU-----------------------------CG d.16.e.L.major.fasta ---UAAAACCAAUGCCUUCACU--------------------GG-CAGUA d.16.e.T.cruzi.fasta ---UAAAACCAAUGCCUUCACC--------------------GGGCAGUA d.16.e.T.brucei.fasta ---UAGAACCAACGCCUCCACCC----------------G-GGGGCAGUA d.16.e.P.carinii.fasta ----AAAACCAAUGCCUUC------------------------------- d.16.e.C.neoformans.fasta ----AAAACCAAUGGGUUUCG----------------------GCCCUCU d.16.e.Fungus.sp.QPX.fasta ----AAAACCAAUGGGUGCAA----------------------GCCCUCU d.16.e.U.maydis.fasta ----AAACC--AUCCUCCUCG----------------------GAGUU-- d.16.e.M.leidyi.fasta --ACCAAUGC--GUU--UAACGA----------------C----GCUUU- d.16.e.T.cystophora.fasta --GCCAAUACCGGUU--UCGCGA----------------CC--GGUUCUA d.16.e.M.prolifera.fasta --ACCGGCGCGGGUCCCUCGGGG----------------CC--CGGUUGC d.16.e.P.haeckeli.fasta --GCCAAUCGGGGCAACCCGU----------------------------- d.16.e.E.rotunda.fasta ----AAAACCAAUACCACCUCG-----------------GUGGCUAUU-- d.16.e.P.chromatophora.fasta ----AAAACCAACGCGUCCUCU-----------------GGGGCGGUUGU d.16.e.A.majus.fasta --GUCGACACGG-------GCUC----------------UGCCCGUUGCU d.16.e.S.indicum.fasta --GUCGACACGG-------GCUC----------------CGCCCGUUGCU d.16.e.D.grandiflora.fasta --GUCGACACGG-------GCUC----------------UGCCUGUUGCU d.16.e.Pla.lanceolata.fasta --GUCGACACGG-------GCUC----------------UGCCUGUUGCU d.16.e.N.tabacum.fasta --GUCGACGCGG-------GCUC----------------UGCCCGUUGCU d.16.e.A.thaliana.fasta --GUCGACGCGG-------GCUC----------------UGCCCGUUGCU d.16.e.S.alba.fasta --GUCGACGCGG-------GCUC----------------UG--UGCUGCU d.16.e.S.tuberosum.fasta --GUCGACGCGG-------GCUC----------------UGCCCGUUGCU d.16.e.F.x.ananassa.fasta --GUCAACGCGG-------GCUC----------------UGC---UCGCA d.16.e.G.max.fasta --GUCAACACAG-------GCUC----------------UGCCUGUUGCU d.16.e.O.sativa.fasta --GCUGACGCGG-------GCUC----------------CGCCCGCUGAU d.16.e.Z.mays.fasta --GCUGACGCGG-------GCUC----------------UGCCCGCCGAU d.16.e.A.verticilliflorum.fast --GUCAAUGCAA-------GCUU----------------UGCUUGUUGCA d.16.e.G.spirotaenia.fasta --GCCGACCUGG-------GCUC-----------------GCCCAGUUCU d.16.e.Staurastrum.sp.M752.fas --GCCAAUCCGA-------GCUU-----------------GCUCGGCAUU d.16.e.C.paradoxa.fasta --ACCAACAC--------CGGGC----------------AACCGGAUCCC d.16.e.G.nostochinearum.fasta --ACCAACACGGUGGGUUCACGC----------------CCUCCGAUCCC d.16.e.G.wittrockiana.fasta --ACCAACUC--------UGGGC----------------AACCCGGAUCC d.16.e.C.luteoviridis.fasta --ACCGACCGGG---------CU----------------UGCCCGAU-CC d.16.e.O.longa.fasta --AUCAAUAUUCCUCG--------------------------UGUCUAUU d.16.e.P.weissei.fasta --AUCAAUAUUCCCCG--------------------------UGUCUAUU d.16.e.C.citrina.fasta --AUCAAUAUUCCCCG--------------------------UGUCUAUU d.16.e.G.steinii.fasta --AUCAAUAUUCCUCG--------------------------UGUCUAUU d.16.e.Ple.lanceolata.fasta --AUCAAUAUUCCUUG--------------------------UGUCUAUU d.16.e.O.quadricornutus.fasta --AUCAAUAUUCCUUG--------------------------UGUCUAUU d.16.e.S.lemnae.fasta --AUCAAUAUUCCUUG--------------------------UGUCUAUU d.16.e.S.mytilus.fasta --ACCAAUAUUCCUUG--------------------------UGUCUAUU d.16.e.E.mobilis.fasta --ACCAAUAUUCCUCG--------------------------UGUCUAUU d.16.e.O.granulifera.1.fasta --ACCAAUAUUCCCCG--------------------------UGUCUAUU d.16.e.O.granulifera.2.fasta --ACCAAUAUUCCUUG--------------------------UGUCUAUU d.16.e.U.gallina.fasta --ACCAAUAUUCCCCG--------------------------UGUCUAUU d.16.e.U.pisces.fasta --ACCAAUAUUCCUUG--------------------------UGUCUAUU d.16.e.P.lepisma.fasta --ACCAAUAUUCCUUG--------------------------UGUCUAUU d.16.e.U.grandis.fasta --ACCAAUAUUCCUCG--------------------------UGUCUAUU d.16.e.B.coli.fasta ------------------------------------------UUCCAAUU d.16.e.E.aediculatus.fasta --ACCAAUAUUCCGCAA-------------------------GGUCUACU d.16.e.T.thermophila.fasta --ACCAAU-CGCAGCAA-------------------------UGU-GAUU d.16.e.Bangia.sp.NWT.fasta --ACCAUCGUGCUUCU---------------------UCGGGAGCACUUU d.16.e.Bangia.sp.VIS7.fasta --CCAAUGCGGUGCUU---------------------GCACCGGUA--UU d.16.e.E.carnea.fasta --ACCAAUCGG--------------------------GCUUGCCCG-UUU d.16.e.R.parvula.fasta --ACCC-UCCG--------------------------GCUUUGCCG-UUC d.16.e.C.coeruleus.fasta --ACCCCUCGGCAAG----------------------GAAUUGCCG-CUU d.16.e.P.aerugineum.1.fasta --ACCAGCCGG--------------------------GCUUGCCCG-UUU d.16.e.R.maculata.fasta --ACCAAUCGG----------------------------CUUGCCG-UUU d.16.e.A.ambigua.fasta --ACCAACCCU--CUCUCGGGAGG---------------------UUCUU d.16.e.A.baicalensis.fasta --ACCAACCCU--CUUUCGGGAGG---------------------UUCUC d.16.e.S.nipponica.fasta --ACCAUCCCU--CUUUUAG-AGG---------------------CUAGU d.16.e.C.radiatus.fasta --GCCAACCCU--CCUU--GGAGG---------------------AAAUA d.16.e.C.criophilum.fasta --ACCAACCUU--UUUC--GGAAG---------------------UGUUU d.16.e.A.capitellata.fasta --ACCAACCC-----CUUCGGGG-----------------------UGAU d.16.e.S.pupula.fasta --ACCAACCC-----CUCCGGGG-----------------------UGAU d.16.e.T.antarctica.fasta --ACCAACCC-----CUUCGGGG-----------------------UGAU d.16.e.E.triangulatum.fasta --ACCAACCC-----CUCACGGG-----------------------UGAU d.16.e.A.bongranii.fasta --ACCAACCC-----CUUCGGGG-----------------------UGAU d.16.e.Pseudogomphonema.sp.fas --ACCAACCC-----CUUCGGGG-----------------------UGAU d.16.e.D.tenue.fasta --ACCAACCG-----CUUCGGCG-----------------------UGAU d.16.e.G.marina.fasta --ACCAACUC-----CUUCGGGA-----------------------UGAU d.16.e.Thalassionema.sp.fasta --ACCAACUC-----CUUCGGGA-----------------------UGUU d.16.e.R.belgicae.fasta --ACCAACCC-----CUUCGGGG-----------------------UGAU d.16.e.Undatella.sp.fasta --ACCAACCC-----CUUCGGGG-----------------------UGAU d.16.e.C.belgica.fasta --ACCAACCCU----CUUCGGAG----------------------GCGUC d.16.e.O.sinensis.fasta --ACCAACCCU----CUUCCGAG----------------------GUGCU d.16.e.D.brightwellii.fasta --ACCAACCCU----CCUCGGAG----------------------GUGAU d.16.e.L.undulatum.fasta --ACCAACCCU----CCUCGGAG----------------------GUGAU d.16.e.T.eccentrica.fasta --ACCAACCCU----CUUCGGAG----------------------GUGCU d.16.e.T.pseudonana.fasta --ACCAACCGU----CUUCGGGAC---------------------GUGCU d.16.e.S.costatum.fasta --ACCUUCACU----CUUCGGAG----------------------UUGAU d.16.e.P.laevis.fasta --GCCAACCA-----CUUCGGUG----------------------GUUCU d.16.e.L.borealis.fasta --ACCAACUCC----CCUCGGGA----------------------GUGCU d.16.e.P.pseudodenticulata.fas --ACCAACUCC----UUUCGAGG----------------------AUGCU d.16.e.B.mediterranea.fasta --ACCAAUAUG----CUUCGGCA----------------------UUUUU d.16.e.B.pacifica.fasta --ACCAAUAAG----CUUCGGCU----------------------UUUUU d.16.e.L.minuta.fasta --ACCAAUGCAGGGUUUUCCCUG----------------------GUGUU d.16.e.L.danicus.fasta --ACCUUCCCU--GCUUGCGGUG------------------------AUU d.16.e.Chaetoceros.sp.fasta --ACCAACCCG----UUUCGGCG----------------------GUGUC d.16.e.A.invadans.fasta --ACCAAUUCA----CUUCGG--UG--------------------AUUUU d.16.e.L.giganteum.fasta --ACCAAUGCAG--UCUUCGGGCUG--------------------GUAUU d.16.e.M.varians.fasta --ACCAUCCUC----GUUUGAGU-------------------------AU d.16.e.B.hominis.fasta --AACCAUAUG----CUUCGGCA-------------------------UG d.16.e.P.marinus.fasta --ACCAACCUAGGCUCCGCCUAG--------------------UC-CUUG d.16.e.T.gondii.fasta --ACCAACCCACCUUCCGG-UGG--------------------UC-CUCA d.16.e.A.fundyense.fasta --ACCAAUUCAAGCUAUGCUUGG--------------------ACACUUG d.16.e.B.bigemina.fasta --ACC---AC----------UU----------------------UUUC-- d.16.e.B.canis.fasta --ACCUCCGC----------UUG--------------------GUUUU-- d.16.e.Babesia.sp.OKD.fasta --ACCUC-CC----------UUG--------------------GUUUU-- d.16.e.B.microti.1.fasta --ACCAACCCC-------UUUGG--------------------GUAAU-- d.16.e.B.microti.2.fasta --ACCAACCCC-------UUUGG--------------------G-AAU-- d.16.e.B.microti.3.fasta --ACCAGCCCC-------UUUGG--------------------GUAAU-- d.16.e.B.microti.4.fasta --ACCAACCC--------UUUGG--------------------GUAAU-- d.16.e.B.microti.5.fasta --ACCAACCC--------UUCGG--------------------GUAAU-- d.16.e.B.rodhaini.fasta --ACCAUCCCC-------UUUGG--------------------GUA-C-- d.16.e.B.gibsoni.fasta --ACCUUCCCG-------CUUCG--------------------GCGGUUC d.16.e.B.bovis.fasta -------------------------------------------------- d.16.e.J.libera.fasta --ACCAAUCGGCUUU---GCCGA--------------------CCG---- d.16.e.R.americana.fasta --ACCACCCUGCGUCCGCGCAGG--------------------UCG---- d.16.e.B.ostreae.fasta --ACCAACUU---------------------------------------- d.16.e.A.dasyae.fasta --ACCAA--UGU-------------------------------------- d.16.e.A.hermannii.fasta --ACCAA--UGU-------------------------------------- d.16.e.N.helminthoides.fasta --ACCAA--UAC-------------------------------------- d.16.e.B.gelatinosum.fasta --ACCAA--UGU-------------------------------------- d.16.e.N.tortuosa.fasta --GCCAA--CAU-------------------------------------- d.16.e.T.hispida.fasta --GCCAA--CGA-------------------------------------- d.16.e.T.violacea.4.fasta --GCCAA--CGA-------------------------------------- d.16.e.T.violacea.1.fasta --GCCAA--CAU-------------------------------------- d.16.e.T.violacea.2.fasta --GCCAA--CAU-------------------------------------- d.16.e.N.shawii.fasta --GCCAA--CAU-------------------------------------- d.16.e.B.investiens.fasta --ACCAA--UGU-------------------------------------- d.16.e.B.macrosporum.fasta --ACCAA--UGU-------------------------------------- d.16.e.A.plicata.fasta --GCCGA--CGC-------------------------------------- d.16.e.C.officinalis.fasta --ACCAA--CAU-------------------------------------- d.16.e.R.carriebowensis.fasta --ACCAA--CAU-------------------------------------- d.16.e.B.hamifera.fasta --ACCAA--UGU-------------------------------------- d.16.e.G.vagum.fasta --ACCAA--UAU-------------------------------------- d.16.e.C.crispus.fasta --ACCAA--UGU-------------------------------------- d.16.e.H.plana.fasta --ACCAA--UGU-------------------------------------- d.16.e.R.leptophylla.fasta --ACCAA--UAU-------------------------------------- d.16.e.P.pulvinata.fasta --ACCAA--UGU-------------------------------------- d.16.e.C.rubrum.fasta --ACCAA--UGU-------------------------------------- d.16.e.Gracilariopsis.sp.fasta --GCCAGCUUUU-------------------------------------- d.16.e.B.moritziana.fasta --CCCAGUUUUUA------------------------------------- d.16.e.H.rubra.fasta --GCCAA--UAUU------------------------------------- d.16.e.D.grisea.fasta CGAUGGGCUUGCCC----------------------------------UU d.16.e.N.fowleri.fasta GCAUCGACCGCUAGCAGGUGCCCGCA--------------AGGGCGCGGG d.16.e.N.gruberi.fasta GAAUCGACCGCUAGCAGGUGCCUUC----------------GGGCGCGGG a.16.e.Hexamita.sp.fasta -------------------------------------------------- d.16.e.T.foetus.fasta -------------------------------------------------- d.16.e.A.khaliulini.fasta -------------------------------------------------- d.16.e.E.aedis.fasta -------------------------------------------------- d.16.e.A.connecticus.fasta -------------------------------------------------- d.16.e.I.barri.fasta -------------------------------------------------- d.16.e.A.ferocious.fasta -------------------------------------------------- d.16.e.Amblyospora.sp.fasta -------------------------------------------------- d.16.e.C.lunata.fasta -------------------------------------------------- d.16.e.P.anophelis.fasta -------------------------------------------------- d.16.e.Hazardia.sp.fasta -------------------------------------------------- d.16.e.H.milleri.fasta -------------------------------------------------- d.16.e.P.simulii.fasta -------------------------------------------------- d.16.e.W.palustris.fasta -------------------------------------------------- d.16.e.Nosema.sp.03.fasta -------------------------------------------------- d.16.e.Nosema.sp.05.fasta -------------------------------------------------- d.16.e.Endoreticulatus.sp.fast -------------------------------------------------- d.16.e.Nosema.sp.02.fasta -------------------------------------------------- d.16.e.N.spodopterae.fasta -------------------------------------------------- d.16.e.N.trichoplusiae.fasta -------------------------------------------------- d.16.e.N.bombycis.27.fasta -------------------------------------------------- d.16.e.N.bombycis.02.fasta -------------------------------------------------- d.16.e.V.imperfecta.fasta -------------------------------------------------- d.16.e.N.furnacalis.fasta -------------------------------------------------- d.16.e.Microsporidium57864.fas -------------------------------------------------- d.16.e.Vairimorpha.sp.C21.fast -------------------------------------------------- d.16.e.N.oulemae.fasta -------------------------------------------------- d.16.e.N.necatrix.fasta -------------------------------------------------- d.16.e.V.necatrix.fasta -------------------------------------------------- d.16.e.N.apis.fasta -------------------------------------------------- d.16.e.O.occidentalis.fasta -------------------------------------------------- d.16.e.Microsporidium.sp.DP119 -------------------------------------------------- d.16.e.V.corneae.fasta -------------------------------------------------- d.16.e.A.michaelis.fasta -------------------------------------------------- d.16.e.T.contejeani.fasta -------------------------------------------------- d.16.e.E.hellem.fasta -------------------------------------------------- d.16.e.Encephalitozoon.sp.fast -------------------------------------------------- d.16.e.E.cuniculi.fasta -------------------------------------------------- d.16.e.O.colligata.fasta -------------------------------------------------- d.16.e.E.salmonis.fasta -------------------------------------------------- d.16.e.N.salmonis.fasta -------------------------------------------------- d.16.e.Enterocytozoonidae.sp.f -------------------------------------------------- d.16.e.E.bieneusi.fasta -------------------------------------------------- d.16.e.B.algerae.fasta -------------------------------------------------- d.16.e.T.solenopsae.fasta -------------------------------------------------- d.16.e.V.acridophagus.fasta -------------------------------------------------- d.16.e.Bacillidium.sp.fasta -------------------------------------------------- d.16.e.P.cristatellae.fasta -------------------------------------------------- d.16.e.Pleistophora.sp.fasta -------------------------------------------------- d.16.e.O.operophterae.fasta -------------------------------------------------- d.16.e.F.magnivora.fasta -------------------------------------------------- d.16.e.G.atherinae.fasta -------------------------------------------------- d.16.e.Ichthyosporidium.sp.fas -------------------------------------------------- d.16.e.L.acerinae.fasta -------------------------------------------------- d.16.e.H.anguillarum.fasta -------------------------------------------------- d.16.e.P.mirandellae.fasta -------------------------------------------------- d.16.e.T.hominis.fasta -------------------------------------------------- d.16.e.V.culicis.fasta -------------------------------------------------- d.16.e.P.hippoglossoideos.fast -------------------------------------------------- d.16.e.Microgemma.sp.fasta -------------------------------------------------- d.16.e.S.lophii.fasta -------------------------------------------------- d.16.e.Pleistophora.sp.LS.fast -------------------------------------------------- d.16.e.D.gammarellum.fasta -------------------------------------------------- d.16.e.M.prosopium.fasta -------------------------------------------------- d.16.e.A.scoticae.fasta -------------------------------------------------- d.16.e.P.whitei.fasta -------------------------------------------------- a.16.c.C.coccineum.fasta -------------------------------------------------- a.16.c.C.ruber.fasta -------------------------------------------------- d.16.c.N.tabacum.fasta -------------------------------------------------- d.16.c.S.oleracea.fasta -------------------------------------------------- d.16.c.Z.mays.fasta -------------------------------------------------- d.16.c.M.polymorpha.fasta -------------------------------------------------- d.16.c.R.communis.fasta -------------------------------------------------- d.16.c.C.vulgaris.fasta -------------------------------------------------- d.16.c.P.wickerhamii.fasta -------------------------------------------------- d.16.c.P.minor.fasta -------------------------------------------------- d.16.c.N.olivacea.fasta -------------------------------------------------- d.16.c.P.parkeae.fasta -------------------------------------------------- d.16.c.C.reinhardtii.fasta -------------------------------------------------- b.16.m.A.castellanii.fasta -------------------------------------------------- d.16.c.P.thurberi.fasta -------------------------------------------------- b.16.m.C.crispus.fasta -------------------------------------------------- d.16.c.T.gondii.fasta -------------------------------------------------- b.16.m.N.crassa.fasta -------------------------------------------------- b.16.m.P.anserina.fasta -------------------------------------------------- b.16.m.P.chrysogenum.fasta -------------------------------------------------- b.16.m.E.nidulans.fasta -------------------------------------------------- b.16.m.S.cerevisiae.fasta -------------------------------------------------- b.16.m.W.saturnus.m.fasta -------------------------------------------------- b.16.m.P.minor.fasta -------------------------------------------------- d.16.c.P.falciparum.fasta -------------------------------------------------- d.16.c.B.bovis.fasta -------------------------------------------------- b.16.m.T.pyriformis.fasta -------------------------------------------------- d.16.m.S.sinuspaulianus.fasta -------------------------------------------------- b.16.m.P.tetraurelia.fasta -------------------------------------------------- b.16.m.D.discoideum.fasta -------------------------------------------------- d.16.m.P.polycephalum.fasta -------------------------------------------------- b.16.m.P.littoralis.fasta -------------------------------------------------- b.16.m.P.wickerhamii.fasta -------------------------------------------------- d.16.c.H.africana.fasta -------------------------------------------------- d.16.c.C.fragile.fasta -------------------------------------------------- d.16.c.C.sertularioides.fasta -------------------------------------------------- d.16.c.C.humicola.fasta -------------------------------------------------- d.16.c.P.uvella.fasta -------------------------------------------------- a.16.c.G.nostochinearum.fasta -------------------------------------------------- a.16.c.G.wittrockiana.fasta -------------------------------------------------- d.16.c.C.paradoxa.fasta -------------------------------------------------- d.16.y.C.paradoxa.fasta -------------------------------------------------- d.16.c.Cryptomonas.sp.fasta -------------------------------------------------- d.16.c.P.palmata.fasta -------------------------------------------------- d.16.c.H.akashiwo.fasta -------------------------------------------------- d.16.c.S.pseudocostatum.fasta -------------------------------------------------- d.16.c.P.littoralis.fasta -------------------------------------------------- d.16.c.C.caldarium.fasta -------------------------------------------------- a.16.c.E.huxleyi.fasta -------------------------------------------------- d.16.c.E.gracilis.fasta -------------------------------------------------- d.16.b.Anabaena.sp.fasta -------------------------------------------------- d.16.b.Chlorogloeopsis.PCC7518 -------------------------------------------------- d.16.b.Synechococcus.sp.fasta -------------------------------------------------- d.16.b.Synechocystis.PCC6803.G -------------------------------------------------- d.16.b.O.agardhii.fasta -------------------------------------------------- d.16.b.Pleurocapsa.7516.fasta -------------------------------------------------- d.16.b.M.aeruginosa.fasta -------------------------------------------------- b.16.m.C.reinhardtii.fasta -------------------------------------------------- d.16.m.C.eugametos.fasta -------------------------------------------------- b.16.m.M.senile.fasta -------------------------------------------------- d.16.b.S.pneumoniae.fasta -------------------------------------------------- d.16.b.S.pyogenes.fasta -------------------------------------------------- d.16.b.B.anthracis.fasta -------------------------------------------------- d.16.b.B.cereus.1.fasta -------------------------------------------------- d.16.b.E.faecalis.fasta -------------------------------------------------- d.16.b.E.faecium2.fasta -------------------------------------------------- d.16.b.L.monocytogenes.fasta -------------------------------------------------- d.16.b.B.subtilis.fasta -------------------------------------------------- d.16.b.B.subtilis.GEN.fasta -------------------------------------------------- d.16.b.B.halodurans.fasta -------------------------------------------------- d.16.b.S.aureus.fasta -------------------------------------------------- d.16.b.S.aureus.GEN.fasta -------------------------------------------------- d.16.b.L.lactis.GEN.fasta -------------------------------------------------- d.16.b.S.pyogenes.GEN.fasta -------------------------------------------------- d.16.b.L.acidophilus.fasta -------------------------------------------------- d.16.b.M.capricolum.fasta -------------------------------------------------- d.16.b.M.mycoides.fasta -------------------------------------------------- d.16.b.E.rhusiopathiae.fasta -------------------------------------------------- d.16.b.C.innocuum.fasta -------------------------------------------------- d.16.b.M.genitalium.fasta -------------------------------------------------- d.16.b.M.pneumoniae.GEN.fasta -------------------------------------------------- d.16.b.M.pneumoniae.fasta -------------------------------------------------- d.16.b.M.gallisepticum.fasta -------------------------------------------------- d.16.b.U.urealyticum.fasta -------------------------------------------------- d.16.b.U.urealyticum.GEN.fasta -------------------------------------------------- d.16.b.M.hyopneumoniae.fasta -------------------------------------------------- d.16.b.F.necrophorum.fasta -------------------------------------------------- d.16.b.F.nucleatum.fasta -------------------------------------------------- d.16.b.S.moniliformis.fasta -------------------------------------------------- d.16.b.C.botulinum.F.fasta -------------------------------------------------- d.16.b.C.tetani.fasta -------------------------------------------------- d.16.b.C.perfringens.fasta -------------------------------------------------- d.16.b.C.difficile.fasta -------------------------------------------------- d.16.b.E.brachy.fasta -------------------------------------------------- d.16.b.Epulopiscium.sp.fasta -------------------------------------------------- d.16.b.H.chlorum.fasta -------------------------------------------------- b.16.m.G.max.fasta -------------------------------------------------- b.16.m.O.berteriana.fasta -------------------------------------------------- b.16.m.S.cereale.fasta -------------------------------------------------- b.16.m.T.aestivum.fasta -------------------------------------------------- d.16.m.Z.mays.fasta -------------------------------------------------- b.16.m.M.polymorpha.fasta -------------------------------------------------- b.16.m.N.olivacea.fasta -------------------------------------------------- d.16.b.G.liquefaciens.fasta -------------------------------------------------- d.16.b.B.japonicum.fasta -------------------------------------------------- d.16.b.R.acidophilus.fasta -------------------------------------------------- d.16.b.A.caulinodans.fasta -------------------------------------------------- d.16.b.B.quintana.fasta -------------------------------------------------- d.16.b.M.loti.fasta -------------------------------------------------- d.16.b.A.tumefaciens.fasta -------------------------------------------------- d.16.b.B.bacilliformis.fasta -------------------------------------------------- d.16.b.B.henselae.fasta -------------------------------------------------- d.16.b.B.melitensis.fasta -------------------------------------------------- d.16.b.R.orientis.fasta -------------------------------------------------- d.16.b.Methylobacterium.sp.fas -------------------------------------------------- d.16.b.R.bellii.fasta -------------------------------------------------- d.16.b.R.felis.URRWXCal2.fasta -------------------------------------------------- d.16.b.R.prowazekii.fasta -------------------------------------------------- d.16.b.R.prowazekii.GEN.fasta -------------------------------------------------- d.16.b.R.rickettsii.fasta -------------------------------------------------- d.16.b.A.calcoaceticus.fasta -------------------------------------------------- d.16.b.P.pacificensis.fasta -------------------------------------------------- d.16.b.C.marismortui.fasta -------------------------------------------------- d.16.b.H.halodenitrificans.fas -------------------------------------------------- d.16.b.P.aeruginosa.fasta -------------------------------------------------- d.16.b.P.aeruginosa.GEN.fasta -------------------------------------------------- d.16.b.Pseudomonas.sp.fasta -------------------------------------------------- d.16.b.P.putida.fasta -------------------------------------------------- d.16.b.C.burnetii.fasta -------------------------------------------------- d.16.b.M.capsulatus.fasta -------------------------------------------------- d.16.b.L.pneumophila.1.fasta -------------------------------------------------- d.16.b.L.pneumophila.2.fasta -------------------------------------------------- d.16.b.A.vinosum.fasta -------------------------------------------------- d.16.b.Beggiatoa.sp.fasta -------------------------------------------------- d.16.b.A.hydrophila.fasta -------------------------------------------------- d.16.b.S.putrefaciens.fasta -------------------------------------------------- d.16.b.C.freundii.fasta -------------------------------------------------- d.16.b.S.dysenteriae.1.fasta -------------------------------------------------- d.16.b.K.pneumoniae.fasta -------------------------------------------------- d.16.b.P.shigelloides.fasta -------------------------------------------------- d.16.b.Y.pestis.fasta -------------------------------------------------- d.16.b.Y.pseudotuberculosis.fa -------------------------------------------------- d.16.b.S.dysenteriae.2.fasta -------------------------------------------------- d.16.b.E.coli.0157G.GEN.fasta -------------------------------------------------- d.16.b.E.coli.EDL.GEN.fasta -------------------------------------------------- d.16.b.E.coli.fasta -------------------------------------------------- d.16.b.E.coli.K12.GEN.fasta -------------------------------------------------- h.16.b.E.coli.hlxnum.fasta -------------------------------------------------- m.16.b.E.coli.mhg.fasta -------------------------------------------------- s.16.b.E.coli.schem.fasta -------------------------------------------------- d.16.b.S.typhimurium.fasta -------------------------------------------------- d.16.b.S.marcescens.fasta -------------------------------------------------- d.16.b.E.tarda.fasta -------------------------------------------------- d.16.b.P.vulgaris.fasta -------------------------------------------------- d.16.b.V.cholerae4.fasta -------------------------------------------------- d.16.b.V.cholerae5.fasta -------------------------------------------------- d.16.b.V.cholerae2.fasta -------------------------------------------------- d.16.b.V.cholerae6.fasta -------------------------------------------------- d.16.b.V.cholerae.fasta -------------------------------------------------- d.16.b.V.cholerae.GEN.fasta -------------------------------------------------- d.16.b.V.parahaemolyticus.fast -------------------------------------------------- d.16.b.H.influenzae7.fasta -------------------------------------------------- d.16.b.H.influenzae8.fasta -------------------------------------------------- d.16.b.H.influenzae6.fasta -------------------------------------------------- d.16.b.H.influenz.fasta -------------------------------------------------- d.16.b.H.influenzae.fasta -------------------------------------------------- d.16.b.P.multocida.fasta -------------------------------------------------- d.16.b.P.multocida.GEN.fasta -------------------------------------------------- d.16.b.X.albilineans.fasta -------------------------------------------------- d.16.b.X.campestris.fasta -------------------------------------------------- d.16.b.X.fastidiosa.GEN.fasta -------------------------------------------------- d.16.b.D.nodosus.fasta -------------------------------------------------- d.16.b.F.tularensis.fasta -------------------------------------------------- d.16.b.B.parapertussis.fasta -------------------------------------------------- d.16.b.B.pertussis.fasta -------------------------------------------------- d.16.b.B.bronchiseptica2.fasta -------------------------------------------------- d.16.b.u.proteobacterium.fasta -------------------------------------------------- d.16.b.B.mallei.fasta -------------------------------------------------- d.16.b.Burkholderia.sp.fasta -------------------------------------------------- d.16.b.N.meningitidis.MD58.GEN -------------------------------------------------- d.16.b.N.meningitidis.Z2491.GE -------------------------------------------------- d.16.b.N.gonorrhoeae.fasta -------------------------------------------------- d.16.b.C.testosteroni.fasta -------------------------------------------------- d.16.b.D.desulfuricans.fasta -------------------------------------------------- d.16.b.M.xanthus.fasta -------------------------------------------------- d.16.b.D.thermophilus.fasta -------------------------------------------------- d.16.b.B.burgdorferi.fasta -------------------------------------------------- d.16.b.B.burgdorferi.GEN.fasta -------------------------------------------------- d.16.b.B.hermsii.fasta -------------------------------------------------- d.16.b.S.aurantia.fasta -------------------------------------------------- d.16.b.T.pallidum.A.fasta -------------------------------------------------- d.16.b.L.illini.fasta -------------------------------------------------- d.16.b.L.interrogans.fasta -------------------------------------------------- d.16.b.C.trachomatis.GEN.fasta -------------------------------------------------- d.16.b.C.trachomatis.L2.fasta -------------------------------------------------- d.16.b.C.muridarum.fasta -------------------------------------------------- d.16.b.C.pneumoniae.AR39.fasta -------------------------------------------------- d.16.b.C.pneumoniae.fasta -------------------------------------------------- d.16.b.C.pneumoniae.J138.fasta -------------------------------------------------- d.16.b.C.pneumoniae.CWL029.fas -------------------------------------------------- d.16.b.C.psittaci.fasta -------------------------------------------------- d.16.b.D.radiodurans.1.fasta -------------------------------------------------- d.16.b.D.radiodurans.GEN.fasta -------------------------------------------------- d.16.b.B.fragilis.fasta -------------------------------------------------- d.16.b.P.gingivalis.fasta -------------------------------------------------- d.16.b.C.vibrioforme.fasta -------------------------------------------------- d.16.b.C.jejuni.fasta -------------------------------------------------- d.16.b.C.jejuni.GEN.fasta -------------------------------------------------- d.16.b.C.sputorum.fasta GUGCCUAAUACAUGCAAGUCGAACGAUGAAGUCCUAGCUUGCUAGGAUGG d.16.b.H.pylori.26695.GEN.fast -------------------------------------------------- d.16.b.H.pylori.J99.GEN.fasta -------------------------------------------------- d.16.b.H.pylori2.fasta -------------------------------------------------- d.16.b.A.capsulatum.fasta -------------------------------------------------- d.16.b.H.foetida.fasta -------------------------------------------------- d.16.b.A.globiformis.fasta -------------------------------------------------- d.16.b.M.luteus.fasta -------------------------------------------------- d.16.b.Frankia.sp.fasta -------------------------------------------------- d.16.b.S.bottropensis.fasta -------------------------------------------------- d.16.b.S.scabiei.fasta -------------------------------------------------- d.16.b.S.neyagawaensis.fasta -------------------------------------------------- d.16.b.S.diastatochromogenes.f -------------------------------------------------- d.16.b.Streptomyces.sp.fasta -------------------------------------------------- d.16.b.S.acidiscabies.fasta -------------------------------------------------- d.16.b.S.griseus.fasta -------------------------------------------------- d.16.b.S.ornatus.fasta -------------------------------------------------- d.16.b.S.subrutilus.fasta -------------------------------------------------- d.16.b.S.bikiniensis.fasta -------------------------------------------------- d.16.b.S.galbus.fasta -------------------------------------------------- d.16.b.S.hygroscopicus.fasta -------------------------------------------------- d.16.b.S.lincolnensis.fasta -------------------------------------------------- d.16.b.S.coelicolor.fasta -------------------------------------------------- d.16.b.S.tendae.fasta -------------------------------------------------- d.16.b.S.ambofaciens.fasta -------------------------------------------------- d.16.b.S.eurythermus.fasta -------------------------------------------------- d.16.b.S.nodosus.fasta -------------------------------------------------- d.16.b.S.sampsonii.fasta -------------------------------------------------- d.16.b.S.glaucescens.fasta -------------------------------------------------- d.16.b.S.pseudogriseolus.fasta -------------------------------------------------- d.16.b.S.caelestis.fasta -------------------------------------------------- d.16.b.S.bluensis.fasta -------------------------------------------------- d.16.b.S.espinosus.fasta -------------------------------------------------- d.16.b.S.mashuensis.fasta -------------------------------------------------- d.16.b.S.rimosus.fasta -------------------------------------------------- d.16.b.S.limosus.fasta -------------------------------------------------- d.16.b.S.odorifer.fasta -------------------------------------------------- d.16.b.S.felleus.fasta -------------------------------------------------- d.16.b.S.albidoflavus.fasta -------------------------------------------------- d.16.b.S.gougerotii.fasta -------------------------------------------------- d.16.b.S.rutgersensis.fasta -------------------------------------------------- d.16.b.S.intermedius.fasta -------------------------------------------------- d.16.b.S.thermodiastaticus.fas -------------------------------------------------- d.16.b.S.thermoviolaceus.fasta -------------------------------------------------- d.16.b.S.thermovulgaris.1.fast -------------------------------------------------- d.16.b.S.thermovulgaris.2.fast -------------------------------------------------- d.16.b.S.macrosporus.fasta -------------------------------------------------- d.16.b.S.megasporus.fasta -------------------------------------------------- d.16.b.S.thermolineatus.fasta -------------------------------------------------- d.16.b.M.tuberculosis.2.fasta -------------------------------------------------- d.16.b.M.tuberculosis.3.fasta -------------------------------------------------- d.16.b.M.avium.fasta -------------------------------------------------- d.16.b.M.leprae.fasta -------------------------------------------------- d.16.b.M.leprae.GEN.fasta -------------------------------------------------- d.16.b.M.tuberculosis.CDC1551. -------------------------------------------------- d.16.b.M.tuberculosis.GEN.fast -------------------------------------------------- d.16.b.N.asteroides.fasta -------------------------------------------------- d.16.b.R.erythropolis.fasta -------------------------------------------------- d.16.b.C.diphtheriae.fasta -------------------------------------------------- d.16.b.A.israelii.fasta -------------------------------------------------- d.16.b.B.hyodysenteriae.fasta -------------------------------------------------- d.16.b.G.subterranea.fasta -------------------------------------------------- d.16.b.P.miotherma.fasta -------------------------------------------------- d.16.b.B.andersonii.fasta -------------------------------------------------- d.16.b.H.aurantiacus.fasta -------------------------------------------------- d.16.b.Leptospirillium.sp.fast -------------------------------------------------- d.16.b.A.aeolicus.fasta -------------------------------------------------- d.16.b.A.pyrophilus.fasta -------------------------------------------------- d.16.b.T.maritima.fasta -------------------------------------------------- d.16.b.T.maritima.GEN.fasta -------------------------------------------------- n.16.b.T.thermophilus.2.num.fa -------------------------------------------------- s.16.b.T.thermophilus.2.schem. -------------------------------------------------- d.16.b.T.thermophilus.2.fasta -------------------------------------------------- s.16.b.T.thermophilus.1.schem. -------------------------------------------------- n.16.b.T.thermophilus.1.num.fa -------------------------------------------------- d.16.b.T.thermophilus.1.fasta -------------------------------------------------- d.16.b.T.aquaticus.fasta -------------------------------------------------- d.16.b.T.roseum.fasta -------------------------------------------------- d.16.b.P.marina.fasta -------------------------------------------------- d.16.b.P.staleyi.fasta -------------------------------------------------- d.16.b.P.Schlesner.fasta -------------------------------------------------- d.16.b.G.obscuriglobus.1.fasta -------------------------------------------------- d.16.b.I.pallida.fasta -------------------------------------------------- d.16.a.P.abyssi.fasta -------------------------------------------------- d.16.a.P.horikoshii.fasta -------------------------------------------------- d.16.a.P.furiosus.fasta -------------------------------------------------- d.16.a.T.celer.fasta -------------------------------------------------- d.16.a.A.fulgidus.fasta -------------------------------------------------- d.16.a.N.equitans.fasta -------------------------------------------------- d.16.a.A.pernix.K1.fasta -------------------------------------------------- d.16.a.P.occultum.fasta -------------------------------------------------- d.16.a.T.tenax.fasta -------------------------------------------------- d.16.a.S.acidocaldarius.fasta -------------------------------------------------- d.16.a.S.solfataricus.fasta -------------------------------------------------- d.16.a.S.solfataricus.2.fasta -------------------------------------------------- d.16.a.M.thermautotrophicus.1. -------------------------------------------------- d.16.a.M.thermautotrophicus.2. -------------------------------------------------- d.16.a.M.formicicum.fasta -------------------------------------------------- d.16.a.M.vannielii.fasta -------------------------------------------------- d.16.a.H.marismortui.rrnA.fast -------------------------------------------------- d.16.a.H.marismortui.rrnB.fast -------------------------------------------------- d.16.a.Halobacterium.sp.fasta -------------------------------------------------- d.16.a.N.bangense.fasta -------------------------------------------------- d.16.a.N.innermongoliae.fasta -------------------------------------------------- d.16.a.H.volcanii.fasta -------------------------------------------------- d.16.a.M.hungatei.fasta -------------------------------------------------- d.16.a.P.torridus.fasta -------------------------------------------------- d.16.a.T.acidophilum.fasta -------------------------------------------------- a.16.e.G.ardeae.fasta -----------------------------GCAGCGAA------------- d.16.e.G.intestinalis.fasta -----------------------------GCAGCGAC------------- a.16.e.G.muris.fasta -----------------------------GGAGCGAA------------- d.16.e.A.bracteata.fasta -----------------------------GCGGCGGU------------- d.16.e.Glomus.sp.W3349.fasta UUGGU-------------------GAAUCAUGAUAA--CUUUUCG--AAU d.16.e.S.cerradensis.fasta UUGGU-------------------GAUUCAUGAUAA--CUUUUCG--AAU a.16.e.G.intraradices.fasta UUGGU-------------------GAUUCAUAAUAA--CUUUUCG--AAU d.16.e.S.culisetae.fasta UUGGU-------------------GAGUCAUAAUAA--CUAAGCA--UAU a.16.e.P.balamuthi.fasta GGGAC-------------------AGGGCGAAACGAGGCAAUUCA--AAG d.16.e.A.flavus.fasta GG--U-------------------GAUUCAUAAUAACUUAA--CG--AAU d.16.e.T.caries.fasta G---U-------------------GAAUCAUAAUAA--CUUUUCU--AAU d.16.e.M.circinelloides.fasta UUGGU-------------------GAUUCAUAAUAA--UUUAGCG--GAU d.16.e.M.racemosus.fasta UUGGU-------------------GAUUCAUAAUAA--UUUAGCG--GAU d.16.e.R.oryzae.fasta UUGGU-------------------GAAUCAUAAUAA--UUAAGCG--GAU a.16.e.M.edulis.fasta UUGGU-------------------GAGACUGGAUAA--CUUUGUGCUGAU a.16.e.P.magellanicus.fasta CUGGU-------------------GAAUCUGGAUAA--CUUUGUGCUGAU b.16.e.E.granulosus.fasta UGCGUUGAGACACUUACUUCUGGAGACUCUGGAUAA--UUGU-UACAGAU d.16.e.D.melanogaster.fasta UUGGUUGA-----------------ACUCUAGAUAA--CA---UGCAGAU b.16.e.C.koreana.fasta UUGGU-------------------GACUCUGAAUAA--CA-U-UGCUGAU b.16.e.A.australis.fasta UGUGGUG------------------ACUCUGGAUAA--CUUUGAGCUGAU b.16.e.O.utahensis.fasta UUUGGUG------------------ACUCUGGAUAA--CUUUUAGCCGAU b.16.e.A.salina.fasta UCUCUUGGU---------------GACUCUGAAUAA--CUAU-AGCCGAU d.16.e.M.musculus.fasta GCGGCUU-G-------------GUGACUCUAGAUAA--CCUCGGGCCGAU d.16.e.R.norvegicus.fasta GCGGCUUUG-------------GUGACUCUAGAUAA--CCUCGGGCCGAU d.16.e.H.sapiens.fasta GCGGCUUUG-------------GUGACUCUAGAUAA--CCUCGGGCCGAU d.16.e.O.cuniculus.fasta GCGGCUUUG-------------GUGACUCUAGAUAA--CCUCGGGCCGAU d.16.e.X.borealis.fasta GCCGCUUUG-------------GUGACUCUAGAUAA--CCUCGGGCCGAU d.16.e.X.laevis.fasta GCCGCUUUG-------------GUGACUCUAGAUAA--CCUCGGGCCGAU d.16.e.A.castellanii.fasta CUGGU-------------------GAUUCAUAGUAA--CUCUUUC-GGAU d.16.e.B.mandrillaris.fasta ACGGU-------------------GAUUCAUAAUAA--CUCUAUC-GAAU d.16.e.P.falciparum.A.fasta -UAAG-------------------GAAUUAUAACAA--AGAAGUA--ACA d.16.e.P.falciparum.S.fasta -AAUU-------------------GAAUUAUAACAA--AGAAGAA--ACA d.16.e.P.vivax.A.fasta -UAAG-------------------GAAUUAUAACAA--AGAAGCG--ACA d.16.e.P.vivax.O.fasta -UUAU-------------------GAAUGAUAACAA--CGAAGUGUGACA d.16.e.P.vivax.S.fasta -UAAG-------------------GAAUGAUAACAA--AGAAGUG--ACA d.16.e.E.histolytica.fasta -UAAG-------------------UGA--GUUAGGA--UGCCACGACAAU d.16.e.I.hoferi.fasta -UGGU-------------------GAUUCAUAAUAA--CUUCGCG--AAU d.16.e.Dermocystidium.sp.fasta UUGGU-------------------GAUUCAUAAUAA--CUUUGCG--AAU d.16.e.S.destruens.fasta UUGGU-------------------GAUUCAUAAUAA--CUUUGCG--AAU d.16.e.A.unguiculata.fasta -UG----------------------AAUCAUAAUAA--CUUCUCG--AAU d.16.e.D.grandis.fasta -UGGU-------------------GAAUCAUAAUAA--CUUGGCG--AAU d.16.e.A.macrogynus.fasta -UGGU-------------------GAUUCAUGAUAA--CUUUGCG--GAC d.16.e.B.emersonii.fasta UUGGU-------------------GAUUCAUGCUAA--CUUUGCG--GAU d.16.e.C.albicans.fasta GGGCU-------------------CUU---UGAUGA--UUCAUAAUAACU d.16.e.S.cerevisiae.fasta GGACU-------------------CUU---UGAUGA--UUCAUAAUAACU d.16.e.N.crassa.fasta GGGCU-------------------AAC---UGGUGA--UUCAUAAUAACU d.16.e.P.anserina.fasta GGGCU-------------------CAC---UGGUGA--UUCAUAAUAACC d.16.e.C.immitis.fasta GGGCU-------------------CUU---UGGUGA--UUCAUAAUAACU d.16.e.L.major.fasta ACACC-------------------CAGCAGUGUUGA--CUCAAUUCAUUC d.16.e.T.cruzi.fasta ACACU-------------------CAGAAGUGUUGA--UUCAAUUCAUUC d.16.e.T.brucei.fasta ACACU-------------------CAGACGUGUUGA--CUCAAUUCAUUC d.16.e.P.carinii.fasta GGGCU-------------------UUU---UGGUGA--UUCAUGAUAACU d.16.e.C.neoformans.fasta AUGGU-------------------GAAUCAUAAUAA--CUUCUCG--AAU d.16.e.Fungus.sp.QPX.fasta AUGGU-------------------GAUUCAUAAUAA--CUUCUCG--AAU d.16.e.U.maydis.fasta -UGGU-------------------GAUUCAUAAUAA--CUUCUCG--AAU d.16.e.M.leidyi.fasta UCGGU-------------------GAUUCAUAAUAA--CUGUUYG--AAU d.16.e.T.cystophora.fasta UUGGU-------------------GAUUCAUGAUAA--CUUCUCG--AAU d.16.e.M.prolifera.fasta UAGGU-------------------GAUUCAUGGUAA--CUUUUCG--AAC d.16.e.P.haeckeli.fasta UAGGU-------------------GAUUCAUAAUAA--CUGGCAA--AAU d.16.e.E.rotunda.fasta CUGGU-------------------GACUCAUAAUAA--CUGAUCG--AAU d.16.e.P.chromatophora.fasta UUGGU-------------------GAUUCAUAAUAA--CUUUUCG--GAU d.16.e.A.majus.fasta GCGAU-------------------GAUUCAUGAUAA--CUUGACG--GAU d.16.e.S.indicum.fasta GCGAU-------------------GAUUCAUGAUAA--CUCGACG--GAU d.16.e.D.grandiflora.fasta UCGAU-------------------GAUUCAUGAUAA--CUCGACG--GAU d.16.e.Pla.lanceolata.fasta UCGAU-------------------GAUUCAUGAUAA--CUCGACG--GAU d.16.e.N.tabacum.fasta GCGAU-------------------GAUUCAUGAUAA--CUCGACG--GAU d.16.e.A.thaliana.fasta CUGAU-------------------GAUUCAUGAUAA--CUCGACG--GAU d.16.e.S.alba.fasta CUGAU-------------------GAUUCAUGAUAA--CUCGACG--GAU d.16.e.S.tuberosum.fasta GCGAU-------------------GAUUCAUGAUAA--CUCGACG--GAU d.16.e.F.x.ananassa.fasta UUGAU-------------------GAUUCAUGAUAA--CUCGACG--GAU d.16.e.G.max.fasta UUGAU-------------------GAUUCAUGAUAA--CUCGUCG--GAU d.16.e.O.sativa.fasta CCGAU-------------------GAUUCAUGAUAA--CUCGACG--GAU d.16.e.Z.mays.fasta CCGAU-------------------GAUUCAUGAUAA--CUUGACG--GAU d.16.e.A.verticilliflorum.fast CUGAU-------------------GAUUCAUGAUAA---UAGACG--GAU d.16.e.G.spirotaenia.fasta UCGGU-------------------GAUUCAUAAUAA--CUCCACG--AAU d.16.e.Staurastrum.sp.M752.fas GCGGU-------------------GAUUCAUAAUAA--CUCCACG--AAU d.16.e.C.paradoxa.fasta UUGGU-------------------GAUUCAUAAUAA--CUUCUCG--AAU d.16.e.G.nostochinearum.fasta UUGGU-------------------GAUUCAUAAUAA--CUUCUCG--AAU d.16.e.G.wittrockiana.fasta UUGGU-------------------GAUUCAUGAUAA--CUUGUCG--GAU d.16.e.C.luteoviridis.fasta GCGGU-------------------GAUUCAUGAUAA--CUCGACG--AAU d.16.e.O.longa.fasta GUGAU-------------------GACUCAUAAUAA--CUGAUCG--AAU d.16.e.P.weissei.fasta GUGAC-------------------GACUCAUAAUAA--CUGAUCG--AAU d.16.e.C.citrina.fasta GUGAU-------------------GACUCAUAAUAA--CUGAUCG--AAU d.16.e.G.steinii.fasta GUGAU-------------------GACUCAUAAUAA--CUGAUCG--AAU d.16.e.Ple.lanceolata.fasta GUGAU-------------------GAUUCAUAAUAA--CUGAUCG--AAU d.16.e.O.quadricornutus.fasta GUGAC-------------------GAUUCAUAAUAA--CUGAUCG--AAU d.16.e.S.lemnae.fasta GUGAU-------------------GACUCAUAAUAA--CUGAUCG--AAU d.16.e.S.mytilus.fasta GUGAU-------------------GACUCAUAAUAA--CUGAUCG--AAU d.16.e.E.mobilis.fasta GUGAC-------------------GACUCAUAAUAA--CUGAUCG--AAU d.16.e.O.granulifera.1.fasta GUGAC-------------------GACUCAUAAUAA--CUGAUCG--AAU d.16.e.O.granulifera.2.fasta GUGAU-------------------GACUCAUAAUAA--CUGAUCG--AAU d.16.e.U.gallina.fasta GUGAC-------------------GACUCAUAAUAA--CUGAUCG--AAU d.16.e.U.pisces.fasta GUGAC-------------------GACUCAUAAUAA--CUGAUCG--AAU d.16.e.P.lepisma.fasta GUGAC-------------------GACUCAUAAUAA--CUGAUCG--AAU d.16.e.U.grandis.fasta GUGAU-------------------GAUUCAUAAUAA--CUGAUCG--AAU d.16.e.B.coli.fasta AAGGU-------------------GAAUCAUAAUAA--CUUCGCA--AAU d.16.e.E.aediculatus.fasta GAGAU-------------------GAUUCAUGAUAA--CUGAUCG--AAU d.16.e.T.thermophila.fasta GAGAU-------------------GAAUCAAAGUAA--CUGAUCG--GAU d.16.e.Bangia.sp.NWT.fasta GAGAU-------------------GAUUCACAAUAA--CUUGUCG--GAU d.16.e.Bangia.sp.VIS7.fasta GUGGU-------------------GAGUCAUAGUAA--CUAAGCG--AAU d.16.e.E.carnea.fasta UUGGU-------------------GAAUCACGGUAA--CUUCU-G--GAU d.16.e.R.parvula.fasta UGGGU-------------------GAAUCACGGUAA--CUUUU-U--GAU d.16.e.C.coeruleus.fasta GUGGU-------------------GAAUCAUGGUAA--CUUUUCG--GAU d.16.e.P.aerugineum.1.fasta -UGGU-------------------GAGUCAUAAUAA--CUUUUCG--GAU d.16.e.R.maculata.fasta UUGGU-------------------GAAUCAUAGUAA--CUUUUCG--GAU d.16.e.A.ambigua.fasta UGGGU-------------------GAGUCAUGAUAA--GCAUGCG--GAU d.16.e.A.baicalensis.fasta UGGGU-------------------GAGUCAUGAUAA--GCAUGCG--GAU d.16.e.S.nipponica.fasta GUGGU-------------------GAAUCAUGAUAA--GUUUGCG--GAU d.16.e.C.radiatus.fasta UUGGU-------------------GAUUCAUGAUAA--SUUAGUG--GAU d.16.e.C.criophilum.fasta UUGGU-------------------GAUUCAUAAUAA--CUUUUCG--GAC d.16.e.A.capitellata.fasta GUGGU-------------------GAAUCAUAAUAA--GCUUGCG--GAG d.16.e.S.pupula.fasta GUGGU-------------------GAUUCAUGAUAA--GCUUGCG--GAU d.16.e.T.antarctica.fasta GUGGU-------------------GAUUCAUAAUAA--GCUUGCG--GAU d.16.e.E.triangulatum.fasta GUGGU-------------------GAUUCAUAAUAA--G-UUGCG--AAU d.16.e.A.bongranii.fasta GUGGU-------------------GAUUCAUAAUAA--GUUUACG--AAU d.16.e.Pseudogomphonema.sp.fas GUGGU-------------------GAAUCAUAAUAA--GCUUGCG---AU d.16.e.D.tenue.fasta GUGGU-------------------GAUUCAUAAUAA--AUUUGCG--AAU d.16.e.G.marina.fasta GUGGU-------------------GAUUCAUAAUAA--UCUUGCG--AAU d.16.e.Thalassionema.sp.fasta UUGGU-------------------GAAUCAUAAUAA--CCUUGUG--AAU d.16.e.R.belgicae.fasta GUGGU-------------------GAGUCAUAAUAA--CUUUGCG--AAU d.16.e.Undatella.sp.fasta GUGGU-------------------GAUUCAUAAUAAU-GUUUGCG--GAU d.16.e.C.belgica.fasta CAGGU-------------------GAUUCAUGAUAA--CUCUGCG--AAU d.16.e.O.sinensis.fasta CUGGU-------------------GAUUCAUAAUAA--CUUUGCG--AAU d.16.e.D.brightwellii.fasta GUGGU-------------------GAUUCAUAAUAA--CUCUGCG--AAU d.16.e.L.undulatum.fasta GUGGU-------------------GAUUCAUAAUAA--CUCUGCG--AAU d.16.e.T.eccentrica.fasta UUGGU-------------------GAUUCAUAAUAA--CUUUUCG--AAU d.16.e.T.pseudonana.fasta UUGGU-------------------GAUUCAUAAUAA--CUUAUCG--GAU d.16.e.S.costatum.fasta UUGGU-------------------GAGUCAUAAUAA--CCUUUCG--AAU d.16.e.P.laevis.fasta UUGGU-------------------GAUUCACAAUAA--CCUUGCG--AAU d.16.e.L.borealis.fasta GUGGU-------------------GAUUCAUAAUAA--CUUUGCG--AAU d.16.e.P.pseudodenticulata.fas GUGGU-------------------GAUUCAUAAUAA--CUUUGCG--AAU d.16.e.B.mediterranea.fasta GUGGU-------------------GAUUCAUAAUAA--CUUUGCG--GAU d.16.e.B.pacifica.fasta GUGGU-------------------GAUUCAUAAUAA--CUUUGCG--GAU d.16.e.L.minuta.fasta GUGGU-------------------GAGUCAUAAUAA--CUAAGCG--AAU d.16.e.L.danicus.fasta UAGGC-------------------GAGUCAUAAUAA--CUUUUCG--AAU d.16.e.Chaetoceros.sp.fasta CUGGU-------------------GAUUCAUAAUAA--CUUUUCG--GAU d.16.e.A.invadans.fasta GUGUU-------------------GAAUCAUAAUAA--CUGUGCU--GAU d.16.e.L.giganteum.fasta GUGUU-------------------GAGUCAUAAUAA--CUGUGCG--GAC d.16.e.M.varians.fasta AUGGU-------------------GAUUCAUGAUAU--UGGAAUG--GAU d.16.e.B.hominis.fasta AUAGU-------------------GAGUAAUAGUAA--CCUAUCG--UAU d.16.e.P.marinus.fasta UUGGU-------------------GAUUCAUAAUAA--CCCGGCG--AAU d.16.e.T.gondii.fasta --GGU-------------------GAUUCAUAGUAA--CCGAACG--GAU d.16.e.A.fundyense.fasta --AAU-------------------GAUUCACAAUGA--C-AAAUG--AAU d.16.e.B.bigemina.fasta -UGGU-------------------GAUUCAUAAUAA--ACUUGCG--AAU d.16.e.B.canis.fasta -CGGU-------------------GAUUCAUAAUAA--ACUUGCG--AAU d.16.e.Babesia.sp.OKD.fasta -CGGU-------------------GAUUCAUAAUAA--ACUCGCG--AAU d.16.e.B.microti.1.fasta -CGGU-------------------GAUUCAUAAUAA--AUUAGCG--AAU d.16.e.B.microti.2.fasta -CGGU-------------------GAUUCAUAAUAA--AUUAGCG--AAU d.16.e.B.microti.3.fasta -CGGU-------------------GAUUCAUAAUAA--AUUAGCG--AAU d.16.e.B.microti.4.fasta -CGGU-------------------GAUUCAUAAUAA--AUUAGCG--AAU d.16.e.B.microti.5.fasta -CGGU-------------------GAUUCAUAAUAA--AUUAGCG--AAU d.16.e.B.rodhaini.fasta -CGGU-------------------GAUUCAUAAUAA--AUUAGCG--AAU d.16.e.B.gibsoni.fasta CCGGU-------------------GAUUCAUAAUAA--AC-AGCG--AAU d.16.e.B.bovis.fasta ---GU-------------------GAUUUACAGUAA--CCU-GCG--ACU d.16.e.J.libera.fasta --GGU-------------------GAUUCAUAGUAA--CCGAGCG--AAU d.16.e.R.americana.fasta --GGU-------------------GAUUCAUAGUAA--CCUUGCG--AAC d.16.e.B.ostreae.fasta -UGGUU------------------GAAUAAUAAUAU---UUGUCG--GAU d.16.e.A.dasyae.fasta GUGGU-------------------GAUUCAUGAUUUU-UUUUCUG---AU d.16.e.A.hermannii.fasta GUGGU-------------------GAUUCAUGAUUUU-UUUUCUG---AU d.16.e.N.helminthoides.fasta GUGGU-------------------GAUUCAUGAUUUU-UUUUCUG---AU d.16.e.B.gelatinosum.fasta GUGGU-------------------GAUUCAUGAUUUU-UUUUCUG---AU d.16.e.N.tortuosa.fasta AUGGU-------------------GAUUCAUAAUUGU-UUUUCUG---AU d.16.e.T.hispida.fasta AUGGU-------------------GAGUCAUGAUUGU-UUUUCUG---AU d.16.e.T.violacea.4.fasta AUGGU-------------------GAGUCAUGAUUGU-UUUUCUG---AU d.16.e.T.violacea.1.fasta AUGGU-------------------GAUUCAUGAUUGU-UUUUCUG---AU d.16.e.T.violacea.2.fasta AUGGU-------------------GAUUCAUGAUUGU-UUUUCUG---AU d.16.e.N.shawii.fasta AUGGU-------------------GAUUCAUAAUUGU-UUUUCUG---AU d.16.e.B.investiens.fasta GUGGU-------------------GAUUCAUGAUUUU-UUUUCUG---AU d.16.e.B.macrosporum.fasta AUGGU-------------------GAUUCAUGAAUAU-UUUUCGG---AU d.16.e.A.plicata.fasta UUGAC-------------------GAUUCAUAACUUU-UUUUCUG---AU d.16.e.C.officinalis.fasta AUGGU-------------------GAUUCAUAAUCGU-CUUUCGG---AU d.16.e.R.carriebowensis.fasta UUGGU-------------------GAUUCAUAAUUUU-CUUUCUG---AU d.16.e.B.hamifera.fasta UUGGU-------------------GAUUCACAAUUUA-UUUUCUG---AU d.16.e.G.vagum.fasta UUGGU-------------------GAUUCACGAUUUC-UUUUCUG---AU d.16.e.C.crispus.fasta UUGGU-------------------GAUUCACAAUUUC-UUUUCUG---AU d.16.e.H.plana.fasta UUGGU-------------------GAUUCACGAUUUC-UUUUCUG---AU d.16.e.R.leptophylla.fasta UUGGU-------------------GAUUCACAAUUUC-UUUUCUG---AU d.16.e.P.pulvinata.fasta UUGGU-------------------GAUUCACAAUUUC-UUUUCUG---AU d.16.e.C.rubrum.fasta UUGGU-------------------GAUUCACACUUAU-UUUUCUG---AU d.16.e.Gracilariopsis.sp.fasta UUGGU-------------------GAUUCUAGAUUUU-UUUUCUG---AU d.16.e.B.moritziana.fasta CUGGU-------------------GAUUCAUACUU---UUUUCUG---AU d.16.e.H.rubra.fasta UUGGU-------------------GAUUCACAAUUUU-UUUUCUG---AU d.16.e.D.grisea.fasta GUGGU-------------------GAAUCAUGACAAC-UUUACGG---AU d.16.e.N.fowleri.fasta AAAGU-------------------GAGC--UAACAAGGUUUUCAUAAGGC d.16.e.N.gruberi.fasta AAAGU-------------------GAAU--UAACAAGGUUUUCAUAAGGC a.16.e.Hexamita.sp.fasta ------------------------GAUUUAUGUUGU----AAAAAU-GAC d.16.e.T.foetus.fasta ------------------------GAGAAACAGUGG----AAAAGUUGAC d.16.e.A.khaliulini.fasta --------------------------------AUGA-------------- d.16.e.E.aedis.fasta --------------------------------AUGA-------------- d.16.e.A.connecticus.fasta --------------------------------AUGA-------------- d.16.e.I.barri.fasta --------------------------------AUGA-------------- d.16.e.A.ferocious.fasta --------------------------------AUGA-------------- d.16.e.Amblyospora.sp.fasta --------------------------------AUGA-------------- d.16.e.C.lunata.fasta --------------------------------AUGA-------------- d.16.e.P.anophelis.fasta --------------------------------AUGA-------------- d.16.e.Hazardia.sp.fasta --------------------------------GUGA-------------- d.16.e.H.milleri.fasta --------------------------------GUGA-------------- d.16.e.P.simulii.fasta --------------------------------CUGA-------------- d.16.e.W.palustris.fasta --------------------------------UUGA-------------- d.16.e.Nosema.sp.03.fasta -------------------------------AAUAA-------------- d.16.e.Nosema.sp.05.fasta -------------------------------AAUAA-------------- d.16.e.Endoreticulatus.sp.fast -------------------------------AAUAA-------------- d.16.e.Nosema.sp.02.fasta -------------------------------AAUAA-------------- d.16.e.N.spodopterae.fasta -------------------------------AAUAA-------------- d.16.e.N.trichoplusiae.fasta -------------------------------AAUAA-------------- d.16.e.N.bombycis.27.fasta -------------------------------AAUAA-------------- d.16.e.N.bombycis.02.fasta -------------------------------AAUAA-------------- d.16.e.V.imperfecta.fasta -------------------------------AAUAA-------------- d.16.e.N.furnacalis.fasta -------------------------------AAUAA-------------- d.16.e.Microsporidium57864.fas -------------------------------AGUAA-------------- d.16.e.Vairimorpha.sp.C21.fast -------------------------------AGUAA-------------- d.16.e.N.oulemae.fasta -------------------------------AGUAA-------------- d.16.e.N.necatrix.fasta -------------------------------AGUAA-------------- d.16.e.V.necatrix.fasta -------------------------------AGUAA-------------- d.16.e.N.apis.fasta -------------------------------AGUAA-------------- d.16.e.O.occidentalis.fasta -------------------------------AGUAA-------------- d.16.e.Microsporidium.sp.DP119 -------------------------------AAUGA-------------- d.16.e.V.corneae.fasta -------------------------------AAUAA-------------- d.16.e.A.michaelis.fasta -------------------------------GAGGA-------------- d.16.e.T.contejeani.fasta -------------------------------AAUAA-------------- d.16.e.E.hellem.fasta -------------------------------GCUAC--------UGCGUA d.16.e.Encephalitozoon.sp.fast --------------------------------UUGA--------CACGAG d.16.e.E.cuniculi.fasta -------------------------------GUUGG-------------- d.16.e.O.colligata.fasta -------------------------AGUGAUGUUGAG-----UAUUUGAG d.16.e.E.salmonis.fasta --------------------------------AUGA-------------- d.16.e.N.salmonis.fasta --------------------------------AUGA-------------- d.16.e.Enterocytozoonidae.sp.f --------------------------------AUGA-------------- d.16.e.E.bieneusi.fasta --------------------------------AUAA-------------- d.16.e.B.algerae.fasta -------------------------CGACUUGAGCA-------------- d.16.e.T.solenopsae.fasta -------------------------GCAUCAUUGUA-------------- d.16.e.V.acridophagus.fasta -------------------------UAUAGUUCAGA-------------- d.16.e.Bacillidium.sp.fasta -------------------------UUAAUUUUUUUU-----U-----UU d.16.e.P.cristatellae.fasta -------------------------UGAGAGAGCAAU-----CG---ACU d.16.e.Pleistophora.sp.fasta -------------------------------AACAA-------------- d.16.e.O.operophterae.fasta --------------------------------UUGA-------------- d.16.e.F.magnivora.fasta ---------------------------------UAA-------------- d.16.e.G.atherinae.fasta -------------------------AA---------------UAGUGUAG d.16.e.Ichthyosporidium.sp.fas -------------------------AU---------------UAGUGGGG d.16.e.L.acerinae.fasta -------------------------GG---------------CGGUGGAG d.16.e.H.anguillarum.fasta ------------------------------------A-----UUGCGCGG d.16.e.P.mirandellae.fasta -------------------------AUUUAAUUUUUA-----UAGCGCGG d.16.e.T.hominis.fasta -------------------------GG---------------AGGUGCGG d.16.e.V.culicis.fasta -------------------------GGC--------------AGGUGCGG d.16.e.P.hippoglossoideos.fast -------------------------AUU--------------UAGUGAGA d.16.e.Microgemma.sp.fasta -------------------------AU----------------AGUGCAG d.16.e.S.lophii.fasta -------------------------AC----------------AGUGCAG d.16.e.Pleistophora.sp.LS.fast -------------------------------------------------G d.16.e.D.gammarellum.fasta -------------------------UUU--------------AUCUGUGG d.16.e.M.prosopium.fasta -------------------------GAA--------------AGGUGUGA d.16.e.A.scoticae.fasta ------------------------CGCACGCAGCGG--------ACACGG d.16.e.P.whitei.fasta ------------------------CGCGCGCAGCGG--------ACAGGG a.16.c.C.coccineum.fasta -------------------------------------------------- a.16.c.C.ruber.fasta -------------------------------------------------- d.16.c.N.tabacum.fasta -------------------------------------------------- d.16.c.S.oleracea.fasta -------------------------------------------------- d.16.c.Z.mays.fasta -------------------------------------------------- d.16.c.M.polymorpha.fasta -------------------------------------------------- d.16.c.R.communis.fasta -------------------------------------------------- d.16.c.C.vulgaris.fasta -------------------------------------------------- d.16.c.P.wickerhamii.fasta -------------------------------------------------- d.16.c.P.minor.fasta -------------------------------------------------- d.16.c.N.olivacea.fasta -------------------------------------------------- d.16.c.P.parkeae.fasta -------------------------------------------------- d.16.c.C.reinhardtii.fasta -------------------------------------------------- b.16.m.A.castellanii.fasta -------------------------------------------------- d.16.c.P.thurberi.fasta -------------------------------------------------- b.16.m.C.crispus.fasta -------------------------------------------------- d.16.c.T.gondii.fasta -------------------------------------------------- b.16.m.N.crassa.fasta -------------------------------------------------- b.16.m.P.anserina.fasta -------------------------------------------------- b.16.m.P.chrysogenum.fasta -------------------------------------------------- b.16.m.E.nidulans.fasta -------------------------------------------------- b.16.m.S.cerevisiae.fasta -------------------------------------------------- b.16.m.W.saturnus.m.fasta -------------------------------------------------- b.16.m.P.minor.fasta -------------------------------------------------- d.16.c.P.falciparum.fasta -------------------------------------------------- d.16.c.B.bovis.fasta -------------------------------------------------- b.16.m.T.pyriformis.fasta -------------------------------------------------- d.16.m.S.sinuspaulianus.fasta ----------AAAAGAAAGAAUUUAAUUUUGGUUCCGAUUGAACGUUUUU b.16.m.P.tetraurelia.fasta -------------------------------------------------- b.16.m.D.discoideum.fasta -------------------------------------------------- d.16.m.P.polycephalum.fasta -------------------------------------------------- b.16.m.P.littoralis.fasta -------------------------------------------------- b.16.m.P.wickerhamii.fasta -------------------------------------------------- d.16.c.H.africana.fasta -------------------------------------------------- d.16.c.C.fragile.fasta -------------------------------------------------- d.16.c.C.sertularioides.fasta -------------------------------------------------- d.16.c.C.humicola.fasta -------------------------------------------------- d.16.c.P.uvella.fasta -------------------------------------------------- a.16.c.G.nostochinearum.fasta -------------------------------------------------- a.16.c.G.wittrockiana.fasta -------------------------------------------------- d.16.c.C.paradoxa.fasta -------------------------------------------------- d.16.y.C.paradoxa.fasta -------------------------------------------------- d.16.c.Cryptomonas.sp.fasta -------------------------------------------------- d.16.c.P.palmata.fasta -------------------------------------------------- d.16.c.H.akashiwo.fasta -------------------------------------------------- d.16.c.S.pseudocostatum.fasta -------------------------------------------------- d.16.c.P.littoralis.fasta -------------------------------------------------- d.16.c.C.caldarium.fasta -------------------------------------------------- a.16.c.E.huxleyi.fasta -------------------------------------------------- d.16.c.E.gracilis.fasta -------------------------------------------------- d.16.b.Anabaena.sp.fasta -------------------------------------------------- d.16.b.Chlorogloeopsis.PCC7518 -------------------------------------------------- d.16.b.Synechococcus.sp.fasta -------------------------------------------------- d.16.b.Synechocystis.PCC6803.G -------------------------------------------------- d.16.b.O.agardhii.fasta -------------------------------------------------- d.16.b.Pleurocapsa.7516.fasta -------------------------------------------------- d.16.b.M.aeruginosa.fasta -------------------------------------------------- b.16.m.C.reinhardtii.fasta -------------------------------------------------- d.16.m.C.eugametos.fasta -------------------------------------------------- b.16.m.M.senile.fasta -------------------------------------------------- d.16.b.S.pneumoniae.fasta -------------------------------------------------- d.16.b.S.pyogenes.fasta -------------------------------------------------- d.16.b.B.anthracis.fasta -------------------------------------------------- d.16.b.B.cereus.1.fasta -------------------------------------------------- d.16.b.E.faecalis.fasta -------------------------------------------------- d.16.b.E.faecium2.fasta -------------------------------------------------- d.16.b.L.monocytogenes.fasta -------------------------------------------------- d.16.b.B.subtilis.fasta -------------------------------------------------- d.16.b.B.subtilis.GEN.fasta -------------------------------------------------- d.16.b.B.halodurans.fasta -------------------------------------------------- d.16.b.S.aureus.fasta -------------------------------------------------- d.16.b.S.aureus.GEN.fasta -------------------------------------------------- d.16.b.L.lactis.GEN.fasta -------------------------------------------------- d.16.b.S.pyogenes.GEN.fasta -------------------------------------------------- d.16.b.L.acidophilus.fasta -------------------------------------------------- d.16.b.M.capricolum.fasta -------------------------------------------------- d.16.b.M.mycoides.fasta -------------------------------------------------- d.16.b.E.rhusiopathiae.fasta -------------------------------------------------- d.16.b.C.innocuum.fasta -------------------------------------------------- d.16.b.M.genitalium.fasta -------------------------------------------------- d.16.b.M.pneumoniae.GEN.fasta -------------------------------------------------- d.16.b.M.pneumoniae.fasta -------------------------------------------------- d.16.b.M.gallisepticum.fasta -------------------------------------------------- d.16.b.U.urealyticum.fasta -------------------------------------------------- d.16.b.U.urealyticum.GEN.fasta -------------------------------------------------- d.16.b.M.hyopneumoniae.fasta -------------------------------------------------- d.16.b.F.necrophorum.fasta -------------------------------------------------- d.16.b.F.nucleatum.fasta -------------------------------------------------- d.16.b.S.moniliformis.fasta -------------------------------------------------- d.16.b.C.botulinum.F.fasta -------------------------------------------------- d.16.b.C.tetani.fasta -------------------------------------------------- d.16.b.C.perfringens.fasta -------------------------------------------------- d.16.b.C.difficile.fasta -------------------------------------------------- d.16.b.E.brachy.fasta -------------------------------------------------- d.16.b.Epulopiscium.sp.fasta -------------------------------------------------- d.16.b.H.chlorum.fasta -------------------------------------------------- b.16.m.G.max.fasta -------------------------------------------------- b.16.m.O.berteriana.fasta -------------------------------------------------- b.16.m.S.cereale.fasta -------------------------------------------------- b.16.m.T.aestivum.fasta -------------------------------------------------- d.16.m.Z.mays.fasta -------------------------------------------------- b.16.m.M.polymorpha.fasta -------------------------------------------------- b.16.m.N.olivacea.fasta -------------------------------------------------- d.16.b.G.liquefaciens.fasta -------------------------------------------------- d.16.b.B.japonicum.fasta -------------------------------------------------- d.16.b.R.acidophilus.fasta -------------------------------------------------- d.16.b.A.caulinodans.fasta -------------------------------------------------- d.16.b.B.quintana.fasta -------------------------------------------------- d.16.b.M.loti.fasta -------------------------------------------------- d.16.b.A.tumefaciens.fasta -------------------------------------------------- d.16.b.B.bacilliformis.fasta -------------------------------------------------- d.16.b.B.henselae.fasta -------------------------------------------------- d.16.b.B.melitensis.fasta -------------------------------------------------- d.16.b.R.orientis.fasta -------------------------------------------------- d.16.b.Methylobacterium.sp.fas -------------------------------------------------- d.16.b.R.bellii.fasta -------------------------------------------------- d.16.b.R.felis.URRWXCal2.fasta -------------------------------------------------- d.16.b.R.prowazekii.fasta -------------------------------------------------- d.16.b.R.prowazekii.GEN.fasta -------------------------------------------------- d.16.b.R.rickettsii.fasta -------------------------------------------------- d.16.b.A.calcoaceticus.fasta -------------------------------------------------- d.16.b.P.pacificensis.fasta -------------------------------------------------- d.16.b.C.marismortui.fasta -------------------------------------------------- d.16.b.H.halodenitrificans.fas -------------------------------------------------- d.16.b.P.aeruginosa.fasta -------------------------------------------------- d.16.b.P.aeruginosa.GEN.fasta -------------------------------------------------- d.16.b.Pseudomonas.sp.fasta -------------------------------------------------- d.16.b.P.putida.fasta -------------------------------------------------- d.16.b.C.burnetii.fasta -------------------------------------------------- d.16.b.M.capsulatus.fasta -------------------------------------------------- d.16.b.L.pneumophila.1.fasta -------------------------------------------------- d.16.b.L.pneumophila.2.fasta -------------------------------------------------- d.16.b.A.vinosum.fasta -------------------------------------------------- d.16.b.Beggiatoa.sp.fasta -------------------------------------------------- d.16.b.A.hydrophila.fasta -------------------------------------------------- d.16.b.S.putrefaciens.fasta -------------------------------------------------- d.16.b.C.freundii.fasta -------------------------------------------------- d.16.b.S.dysenteriae.1.fasta -------------------------------------------------- d.16.b.K.pneumoniae.fasta -------------------------------------------------- d.16.b.P.shigelloides.fasta -------------------------------------------------- d.16.b.Y.pestis.fasta -------------------------------------------------- d.16.b.Y.pseudotuberculosis.fa -------------------------------------------------- d.16.b.S.dysenteriae.2.fasta -------------------------------------------------- d.16.b.E.coli.0157G.GEN.fasta -------------------------------------------------- d.16.b.E.coli.EDL.GEN.fasta -------------------------------------------------- d.16.b.E.coli.fasta -------------------------------------------------- d.16.b.E.coli.K12.GEN.fasta -------------------------------------------------- h.16.b.E.coli.hlxnum.fasta -------------------------------------------------- m.16.b.E.coli.mhg.fasta -------------------------------------------------- s.16.b.E.coli.schem.fasta -------------------------------------------------- d.16.b.S.typhimurium.fasta -------------------------------------------------- d.16.b.S.marcescens.fasta -------------------------------------------------- d.16.b.E.tarda.fasta -------------------------------------------------- d.16.b.P.vulgaris.fasta -------------------------------------------------- d.16.b.V.cholerae4.fasta -------------------------------------------------- d.16.b.V.cholerae5.fasta -------------------------------------------------- d.16.b.V.cholerae2.fasta -------------------------------------------------- d.16.b.V.cholerae6.fasta -------------------------------------------------- d.16.b.V.cholerae.fasta -------------------------------------------------- d.16.b.V.cholerae.GEN.fasta -------------------------------------------------- d.16.b.V.parahaemolyticus.fast -------------------------------------------------- d.16.b.H.influenzae7.fasta -------------------------------------------------- d.16.b.H.influenzae8.fasta -------------------------------------------------- d.16.b.H.influenzae6.fasta -------------------------------------------------- d.16.b.H.influenz.fasta -------------------------------------------------- d.16.b.H.influenzae.fasta -------------------------------------------------- d.16.b.P.multocida.fasta -------------------------------------------------- d.16.b.P.multocida.GEN.fasta -------------------------------------------------- d.16.b.X.albilineans.fasta -------------------------------------------------- d.16.b.X.campestris.fasta -------------------------------------------------- d.16.b.X.fastidiosa.GEN.fasta -------------------------------------------------- d.16.b.D.nodosus.fasta -------------------------------------------------- d.16.b.F.tularensis.fasta -------------------------------------------------- d.16.b.B.parapertussis.fasta -------------------------------------------------- d.16.b.B.pertussis.fasta -------------------------------------------------- d.16.b.B.bronchiseptica2.fasta -------------------------------------------------- d.16.b.u.proteobacterium.fasta -------------------------------------------------- d.16.b.B.mallei.fasta -------------------------------------------------- d.16.b.Burkholderia.sp.fasta -------------------------------------------------- d.16.b.N.meningitidis.MD58.GEN -------------------------------------------------- d.16.b.N.meningitidis.Z2491.GE -------------------------------------------------- d.16.b.N.gonorrhoeae.fasta -------------------------------------------------- d.16.b.C.testosteroni.fasta -------------------------------------------------- d.16.b.D.desulfuricans.fasta -------------------------------------------------- d.16.b.M.xanthus.fasta -------------------------------------------------- d.16.b.D.thermophilus.fasta -------------------------------------------------- d.16.b.B.burgdorferi.fasta -------------------------------------------------- d.16.b.B.burgdorferi.GEN.fasta -------------------------------------------------- d.16.b.B.hermsii.fasta -------------------------------------------------- d.16.b.S.aurantia.fasta -------------------------------------------------- d.16.b.T.pallidum.A.fasta -------------------------------------------------- d.16.b.L.illini.fasta -------------------------------------------------- d.16.b.L.interrogans.fasta -------------------------------------------------- d.16.b.C.trachomatis.GEN.fasta -------------------------------------------------- d.16.b.C.trachomatis.L2.fasta -------------------------------------------------- d.16.b.C.muridarum.fasta -------------------------------------------------- d.16.b.C.pneumoniae.AR39.fasta -------------------------------------------------- d.16.b.C.pneumoniae.fasta -------------------------------------------------- d.16.b.C.pneumoniae.J138.fasta -------------------------------------------------- d.16.b.C.pneumoniae.CWL029.fas -------------------------------------------------- d.16.b.C.psittaci.fasta -------------------------------------------------- d.16.b.D.radiodurans.1.fasta -------------------------------------------------- d.16.b.D.radiodurans.GEN.fasta -------------------------------------------------- d.16.b.B.fragilis.fasta -------------------------------------------------- d.16.b.P.gingivalis.fasta -------------------------------------------------- d.16.b.C.vibrioforme.fasta -------------------------------------------------- d.16.b.C.jejuni.fasta -------------------------------------------------- d.16.b.C.jejuni.GEN.fasta -------------------------------------------------- d.16.b.C.sputorum.fasta AUUAGUGGCGCACGGGUGAGUAAUGUAUAGCUAAUCUGCCCCAUAGAGAG d.16.b.H.pylori.26695.GEN.fast -------------------------------------------------- d.16.b.H.pylori.J99.GEN.fasta -------------------------------------------------- d.16.b.H.pylori2.fasta -------------------------------------------------- d.16.b.A.capsulatum.fasta -------------------------------------------------- d.16.b.H.foetida.fasta -------------------------------------------------- d.16.b.A.globiformis.fasta -------------------------------------------------- d.16.b.M.luteus.fasta -------------------------------------------------- d.16.b.Frankia.sp.fasta -------------------------------------------------- d.16.b.S.bottropensis.fasta -------------------------------------------------- d.16.b.S.scabiei.fasta -------------------------------------------------- d.16.b.S.neyagawaensis.fasta -------------------------------------------------- d.16.b.S.diastatochromogenes.f -------------------------------------------------- d.16.b.Streptomyces.sp.fasta -------------------------------------------------- d.16.b.S.acidiscabies.fasta -------------------------------------------------- d.16.b.S.griseus.fasta -------------------------------------------------- d.16.b.S.ornatus.fasta -------------------------------------------------- d.16.b.S.subrutilus.fasta -------------------------------------------------- d.16.b.S.bikiniensis.fasta -------------------------------------------------- d.16.b.S.galbus.fasta -------------------------------------------------- d.16.b.S.hygroscopicus.fasta -------------------------------------------------- d.16.b.S.lincolnensis.fasta -------------------------------------------------- d.16.b.S.coelicolor.fasta -------------------------------------------------- d.16.b.S.tendae.fasta -------------------------------------------------- d.16.b.S.ambofaciens.fasta -------------------------------------------------- d.16.b.S.eurythermus.fasta -------------------------------------------------- d.16.b.S.nodosus.fasta -------------------------------------------------- d.16.b.S.sampsonii.fasta -------------------------------------------------- d.16.b.S.glaucescens.fasta -------------------------------------------------- d.16.b.S.pseudogriseolus.fasta -------------------------------------------------- d.16.b.S.caelestis.fasta -------------------------------------------------- d.16.b.S.bluensis.fasta -------------------------------------------------- d.16.b.S.espinosus.fasta -------------------------------------------------- d.16.b.S.mashuensis.fasta -------------------------------------------------- d.16.b.S.rimosus.fasta -------------------------------------------------- d.16.b.S.limosus.fasta -------------------------------------------------- d.16.b.S.odorifer.fasta -------------------------------------------------- d.16.b.S.felleus.fasta -------------------------------------------------- d.16.b.S.albidoflavus.fasta -------------------------------------------------- d.16.b.S.gougerotii.fasta -------------------------------------------------- d.16.b.S.rutgersensis.fasta -------------------------------------------------- d.16.b.S.intermedius.fasta -------------------------------------------------- d.16.b.S.thermodiastaticus.fas -------------------------------------------------- d.16.b.S.thermoviolaceus.fasta -------------------------------------------------- d.16.b.S.thermovulgaris.1.fast -------------------------------------------------- d.16.b.S.thermovulgaris.2.fast -------------------------------------------------- d.16.b.S.macrosporus.fasta -------------------------------------------------- d.16.b.S.megasporus.fasta -------------------------------------------------- d.16.b.S.thermolineatus.fasta -------------------------------------------------- d.16.b.M.tuberculosis.2.fasta -------------------------------------------------- d.16.b.M.tuberculosis.3.fasta -------------------------------------------------- d.16.b.M.avium.fasta -------------------------------------------------- d.16.b.M.leprae.fasta -------------------------------------------------- d.16.b.M.leprae.GEN.fasta -------------------------------------------------- d.16.b.M.tuberculosis.CDC1551. -------------------------------------------------- d.16.b.M.tuberculosis.GEN.fast -------------------------------------------------- d.16.b.N.asteroides.fasta -------------------------------------------------- d.16.b.R.erythropolis.fasta -------------------------------------------------- d.16.b.C.diphtheriae.fasta -------------------------------------------------- d.16.b.A.israelii.fasta -------------------------------------------------- d.16.b.B.hyodysenteriae.fasta -------------------------------------------------- d.16.b.G.subterranea.fasta -------------------------------------------------- d.16.b.P.miotherma.fasta -------------------------------------------------- d.16.b.B.andersonii.fasta -------------------------------------------------- d.16.b.H.aurantiacus.fasta -------------------------------------------------- d.16.b.Leptospirillium.sp.fast -------------------------------------------------- d.16.b.A.aeolicus.fasta -------------------------------------------------- d.16.b.A.pyrophilus.fasta -------------------------------------------------- d.16.b.T.maritima.fasta -------------------------------------------------- d.16.b.T.maritima.GEN.fasta -------------------------------------------------- n.16.b.T.thermophilus.2.num.fa -------------------------------------------------- s.16.b.T.thermophilus.2.schem. -------------------------------------------------- d.16.b.T.thermophilus.2.fasta -------------------------------------------------- s.16.b.T.thermophilus.1.schem. -------------------------------------------------- n.16.b.T.thermophilus.1.num.fa -------------------------------------------------- d.16.b.T.thermophilus.1.fasta -------------------------------------------------- d.16.b.T.aquaticus.fasta -------------------------------------------------- d.16.b.T.roseum.fasta -------------------------------------------------- d.16.b.P.marina.fasta -------------------------------------------------- d.16.b.P.staleyi.fasta -------------------------------------------------- d.16.b.P.Schlesner.fasta -------------------------------------------------- d.16.b.G.obscuriglobus.1.fasta -------------------------------------------------- d.16.b.I.pallida.fasta -------------------------------------------------- d.16.a.P.abyssi.fasta -------------------------------------------------- d.16.a.P.horikoshii.fasta -------------------------------------------------- d.16.a.P.furiosus.fasta -------------------------------------------------- d.16.a.T.celer.fasta -------------------------------------------------- d.16.a.A.fulgidus.fasta -------------------------------------------------- d.16.a.N.equitans.fasta -------------------------------------------------- d.16.a.A.pernix.K1.fasta -------------------------------------------------- d.16.a.P.occultum.fasta -------------------------------------------------- d.16.a.T.tenax.fasta -------------------------------------------------- d.16.a.S.acidocaldarius.fasta -------------------------------------------------- d.16.a.S.solfataricus.fasta -------------------------------------------------- d.16.a.S.solfataricus.2.fasta -------------------------------------------------- d.16.a.M.thermautotrophicus.1. -------------------------------------------------- d.16.a.M.thermautotrophicus.2. -------------------------------------------------- d.16.a.M.formicicum.fasta -------------------------------------------------- d.16.a.M.vannielii.fasta -------------------------------------------------- d.16.a.H.marismortui.rrnA.fast -------------------------------------------------- d.16.a.H.marismortui.rrnB.fast -------------------------------------------------- d.16.a.Halobacterium.sp.fasta -------------------------------------------------- d.16.a.N.bangense.fasta -------------------------------------------------- d.16.a.N.innermongoliae.fasta -------------------------------------------------- d.16.a.H.volcanii.fasta -------------------------------------------------- d.16.a.M.hungatei.fasta -------------------------------------------------- d.16.a.P.torridus.fasta -------------------------------------------------- d.16.a.T.acidophilum.fasta -------------------------------------------------- a.16.e.G.ardeae.fasta ---------------------------------UGGCCGCCUGGGCUUCC d.16.e.G.intestinalis.fasta ---------------------------------GGCCCGCCCGGGCUUCC a.16.e.G.muris.fasta ---------------------------------UGCCCGGAUGAGGUUCC d.16.e.A.bracteata.fasta ---------------------------------GUGCUGGGCGAGAGUCU d.16.e.Glomus.sp.W3349.fasta CGUAUGGCCUC---GUGCCGAC-GAU-------GAAUCAUUCAAAUUUCU d.16.e.S.cerradensis.fasta CGUAUGGCCUU---GCGCUGAC-GAU-------GUAUCAUUCAAAUUUCU a.16.e.G.intraradices.fasta CGUAUGACUUU---ACGUCGAC-GAU-------GAAUCAUUCAAAUUUCU d.16.e.S.culisetae.fasta CGCAUGGCCUU---GUGCCGGC-GAA-------GGAUCAUUCAAAUUUCU a.16.e.P.balamuthi.fasta CUGAUCGCUUUCUAACGAGGGC-GAC-------ACACUGUUCGAAUUCCU d.16.e.A.flavus.fasta CGCAUGGCCUU---GCGCCGGC-GAU-------GGUUCAUUCAAAUUUCU d.16.e.T.caries.fasta CGCAUGGCCUU---GUGCCGGC-GAU-------GCUUCAUUCAAAUAUCU d.16.e.M.circinelloides.fasta CGCAUGGCCUU---GUGCUAGC-GAC-------AGUCCACUCGAUUUUCU d.16.e.M.racemosus.fasta CGCAUGGCCUU---GUGCUAGC-GAC-------AGUCCACUCGAUUUUCU d.16.e.R.oryzae.fasta CGCAUGGCCUU---GUGCCGGC-GAC-------GGUCCACUCGAUUUUCU a.16.e.M.edulis.fasta CGCA--CGGCCUC-GCGCCGGC-GAC-------GUAUCUUUCAAAUGUCU a.16.e.P.magellanicus.fasta CGCA--CGGCCCUAGUGCCGGC-GAC-------GUAUCUUUCAAAUGUCU b.16.e.E.granulosus.fasta CGCAGUCGGCGUU-GAGUCGGC-GAC-------GGGUCUU-CAAAUGUCU d.16.e.D.melanogaster.fasta CGUA--UGGUCUU-GUACCGAC-GAC-------AGAUCUUUCAAAUGUCU b.16.e.C.koreana.fasta CGCA--CGGUCUU-GCACCGGC-GAC-------GUAUCUUUCAAGUGUCU b.16.e.A.australis.fasta CGCA--CGGUCUA-GCACCGGC-GAC-------GUAUCUUUCAAGUGUCU b.16.e.O.utahensis.fasta CGCA--CGGUCCAAGUACCGGC-GAC-------GCAUCUUUCAAAUGUCU b.16.e.A.salina.fasta CGCA--CGGUCUC-GCACCGGC-GAC-------GUGUCUUUCAAAUGUCU d.16.e.M.musculus.fasta CGCA--CGCCCCCCGUGGCGGC-GAC-------GACCCAUUCGAACGUCU d.16.e.R.norvegicus.fasta CGCA--CGCCCUCCGUGGCGGC-GAC-------GACCCAUUCGAACGUCU d.16.e.H.sapiens.fasta CGCA--CGCCCCCCGUGGCGGC-GAC-------GACCCAUUCGAACGUCU d.16.e.O.cuniculus.fasta CGCA---GCCCUCCGUGGCGGC-GAC-------GACCCAUUCGAACGUCU d.16.e.X.borealis.fasta CGCA--CGUCC-CCGUGACGGC-GAC-------GAUACAUUCGGAUGUCU d.16.e.X.laevis.fasta CGCA--CGUCC-CCGUGACGGC-GAC-------GAUACAUUCGGAUGUCU d.16.e.A.castellanii.fasta CGCAUUCAUGCCCUCCUUGUGG-GGGCGGCGACGAUUCAUUCAAAUUUCU d.16.e.B.mandrillaris.fasta CGCAC-CAUGGUCCCCUCGUGG-GAUCGGCGAUGCUUCAUUCAAAUUUCU d.16.e.P.falciparum.A.fasta CGUAA-UA-AAUUUAU---UUU-AUUUAGUGUGUAUCAAUC-GAGUUUCU d.16.e.P.falciparum.S.fasta CAUAA-AA-UAUGUGU---AUU-AU-----------CAAUC-GAGUAUCU d.16.e.P.vivax.A.fasta CGUAA-UG-GAUCCGUCCAUUU-UU--AGUGUGUAUCAAUC-GAGUUUCU d.16.e.P.vivax.O.fasta CGUAA-AAAGAUUCGCCCAUUU-UUUUAGUGUGUGUCCAUC-GAGUUUCU d.16.e.P.vivax.S.fasta CAUAG-AAGGACCUGCGUCCAU-UUAUAGUGUGUAUCAAUC-GAGUUUCU d.16.e.E.histolytica.fasta UGUAG-AACACACAGU--GUUU-AACAAGUA---ACCAAUGAGAAUUUCU d.16.e.I.hoferi.fasta CGAAU----GGCUUGUGCCGUC-GAU-------GAUUCAUUCAAAUCUCU d.16.e.Dermocystidium.sp.fasta CGUAU-GGCUUCGUGCCGACGA-UG---------AUUCAUUCAAAUUUCU d.16.e.S.destruens.fasta CGUAU-GACAUUUUGUCGACGA-UG---------AUUCAUUCAAAUUUCU d.16.e.A.unguiculata.fasta CGU-U---GAGCUUGUCUCGUC-GAU-------GAAUCAUUCAAAUUUCU d.16.e.D.grandis.fasta CGCAU---GGUCUUGUGCCGGC-GAU-------GAAUCAUUCAAAUUUCU d.16.e.A.macrogynus.fasta CGCAU----GGCCCU---GCCG-GCGGCG-----GGUCAUUCAAAUUUCU d.16.e.B.emersonii.fasta CGCAU----AGCCUUUGUGCUG-GCGACG-----GGUCAUUCAAAUUUCU d.16.e.C.albicans.fasta UUU-CGAAUCGCAUGGCCUUGU-G-CUGGCGAUGGUUCAUUCAAAUUUCU d.16.e.S.cerevisiae.fasta UUU-CGAAUCGCAUGGCCUUGU-G-CUGGCGAUGGUUCAUUCAAAUUUCU d.16.e.N.crassa.fasta UCU-CGAAUCGCAUGGCCUUGC-G-CUGGCGAUGGUUCAUUCAAAUUUCU d.16.e.P.anserina.fasta UCU-CGAAUCGCACGGCCUUGC-G-CCGGCGAUGGUUCAUUCAAAUUUCU d.16.e.C.immitis.fasta UGU-CGAAUCGCAUGGCCUUGC-G-CUGGCGAUGGUUCAUUCAAAUUUCU d.16.e.L.major.fasta CGUGCGAAAGCCG-GCUUGUU----CCGGCGUCUUUUGA--CGAACAACU d.16.e.T.cruzi.fasta CGUGCGAAAGCCG-GGUUUUUU-AUCCGGCGUCUUUUGA--CGAACAACU d.16.e.T.brucei.fasta CGUGCGAAAGCCGAGCCUUUUU-GCUCGGCGUCUACUGA--CGAACAACU d.16.e.P.carinii.fasta U-CGCGGAUCGCAUGGCCUUGU-G-CUGGCGAUGAUUCAUUCAAAUUUCU d.16.e.C.neoformans.fasta CGCAU---GGCCUUGUGCCGGC-GAU-------GCUUCAUUCAAAUAUCU d.16.e.Fungus.sp.QPX.fasta CGCAU---GGCCUUGCGCCGGC-GAU-------GCUUCAUUCAAAUAUCU d.16.e.U.maydis.fasta CGCAC---GGCCUUGUGCUGGC-GAU-------GCUUCAUUCAAAUAUCU d.16.e.M.leidyi.fasta CGCAU--GGCCCUCGUGCCGGC-GAU-------GUUUCAUUCGAGUUUCU d.16.e.T.cystophora.fasta CGCAC--GGGC-UUGUACCGGC-GAU-------GUUUCAUUCAAAUAUCU d.16.e.M.prolifera.fasta CGCAU--GGCCCUCGAGCCGGC-GGU-------GCUUCAUUCAAAUUUCU d.16.e.P.haeckeli.fasta CGCAU----GCUUUCAAGCGAC-GAU-------GAUUCACUCAAAUUUCU d.16.e.E.rotunda.fasta CGCAU---GGCCUCGUGCUGGC-GAU-------AGUUCAUUCAAAUUUCU d.16.e.P.chromatophora.fasta CGCAC---GGCCUCGCGCUGGC-GAC-------AGUUCAUUCAAAUUUCU d.16.e.A.majus.fasta CGCAC--GGCCUUCGUGCCGGC-GAC-------GCAUCAUUCAAAUUUCU d.16.e.S.indicum.fasta CGCAC--GGCCCUCGUGCCGGC-GAC-------GCAUCAUUCAAAUUUCU d.16.e.D.grandiflora.fasta CGCAA--GGCCCUCGUGCCGGC-GAC-------ACAUCAUUCAAAUUUCU d.16.e.Pla.lanceolata.fasta CGCAC--GGCCUUCGUGCCGGC-GAC-------GCAUCAUUCAAAUUUCU d.16.e.N.tabacum.fasta CGCAC--GGCCAUCGUGCCGGC-GAC-------GCAUCAUUCAAAUUUCU d.16.e.A.thaliana.fasta CGCAU--GGCCUCUGUGCUGGC-GAC-------GCAUCAUUCAAAUUUCU d.16.e.S.alba.fasta CGCAU--GGCCUUUGUGCUGGC-GAC-------GCAUCAUUCAAAUUUCU d.16.e.S.tuberosum.fasta CGCAC--GGCCAUCGUGCCGGC-GAC-------GCAUCAUUCAAAUUUCU d.16.e.F.x.ananassa.fasta CGCAC--AGCCUUUGUGCUGGC-GAC-------GCAUCAUUCAAAUAUCU d.16.e.G.max.fasta CGCAC--GGCCUUUGUGCCGGC-GAC-------GCAUCAUUCAAAUUUCU d.16.e.O.sativa.fasta CGCAC--GGCCCUCGUGCCGGC-GAC-------GCAUCAUUCAAAUUUCU d.16.e.Z.mays.fasta CGCAC--GGCCUUCGUGCCGGC-GAC-------GCAUCAUUCAAAUUUCU d.16.e.A.verticilliflorum.fast CGCAU--GGCCCCUGUGUCGGC-GAU-------GCAUCAUUCAAGUUUCU d.16.e.G.spirotaenia.fasta CGCAC--AGCCUU-GCGCUGGC-GAU-------GUACCAUUCAAAUUUCU d.16.e.Staurastrum.sp.M752.fas CGCAU--GGCCUU-GCGCCGGC-GAU-------GUUUCAUUCAAAUUUCU d.16.e.C.paradoxa.fasta CGCAU--GGCUUU-ACGCCGGC-GAU-------GCUUCAUUCAAAUUUCU d.16.e.G.nostochinearum.fasta CGCAU--GGCUUC-AUGCCGGC-GAU-------GCUUCAUUCAAAUUUCU d.16.e.G.wittrockiana.fasta -GCAU--GGCUUU-AUGCCGGC-GAC-------GCUUCAUUCAAAUUUCU d.16.e.C.luteoviridis.fasta CGUAC--GGCCUC-GAGCCGAC-GAU-------GUUUCAUUCAAAUUUCU d.16.e.O.longa.fasta CGCAU--GGGCUUUGC--CCGC-GAU-------AAAUCAUUCAAGUUUCU d.16.e.P.weissei.fasta CGCAU--GGGCUUUGC--CCGC-GAU-------ACAUCAUUCAAGUUUCU d.16.e.C.citrina.fasta CGCAU--GGGCUUUGC--CCGC-GAU-------ACAUCAUUCAAGUUUCU d.16.e.G.steinii.fasta CGCAU--GGGCUUUGC--CCGC-GAU-------ACAUCAUUCAAGUUUCU d.16.e.Ple.lanceolata.fasta CGCUU--CGGCUUUGC--CAGC-GAU-------ACAUCAUUCAAGUUUCU d.16.e.O.quadricornutus.fasta CGCAU--GGGCUUUGC--UCGC-GAU-------ACAUCAUUCAAGUUUCU d.16.e.S.lemnae.fasta CGCAU--GGGCUUUGC--CCGC-GAU-------ACAUCAUUCAAGUUUCU d.16.e.S.mytilus.fasta CGCAU--GGGCUUUGC--CCGC-GAU-------ACAUCAUUCAAGUUUCU d.16.e.E.mobilis.fasta CGCAU--GGACUUUGU--CCGC-GAU-------ACAUCAUUCAAGUUUCU d.16.e.O.granulifera.1.fasta CGCAU--GGACUUUGU--CCGC-GAU-------ACAUCAUUCAAGUUUCU d.16.e.O.granulifera.2.fasta CGCAU--GGACUUUGU--CCGC-GAU-------ACAUCAUUCAAGUUUCU d.16.e.U.gallina.fasta CGCAU--GGACUUUGU--CCGC-GAU-------ACAUCAUUCAAGUUUCU d.16.e.U.pisces.fasta CGCAU--GGACUUUGU--CCGC-GAU-------ACAUCAUUCAAGUUUCU d.16.e.P.lepisma.fasta CGCAU--GGACUUUGU--CCGC-GAU-------AAAUCAUUCAAGUUUCU d.16.e.U.grandis.fasta CGCAU--AGUCUUUGG--CUGC-GAU-------ACAUCAUUCAAGUUUCU d.16.e.B.coli.fasta CGC-----GAUUUUGU--C-GC-GAU-------AAAUCAUCCAAGUUUCU d.16.e.E.aediculatus.fasta UGCUG--GAACUCUA-----GC-AAU-------AAAUCAUGUAGGUUUCU d.16.e.T.thermophila.fasta CG------AGGUUUAC--CU-C-GAU-------AAAUCAUCUAAGUUUCU d.16.e.Bangia.sp.NWT.fasta CGCAU--GGCCUC-GUGCUGGC-GAC-------CCCUCAUUCAAAUUUCU d.16.e.Bangia.sp.VIS7.fasta CGUAU--GGCCUUUGCGCUGAC-GAU-------GAAUCAUUCAAGUUUCU d.16.e.E.carnea.fasta CGCAU--GGCCUU-GCGCCGGC-GAC-------AGAUCAUUCAAAUUUCU d.16.e.R.parvula.fasta CGCAU--GGCUUU-G--CCGGC-GAC-------AGAUCAUUCAAAUUUCU d.16.e.C.coeruleus.fasta CGCAU--GGCGUC-A-GCCGGC-GAC-------GGUUCAUUCAAAUUUCU d.16.e.P.aerugineum.1.fasta CGCA----GCAAU-G------C-GAC-------GUUUCAUUCAAAUUUCU d.16.e.R.maculata.fasta CGCAU--GGCUUCGG--CCGGC-GAC-------AAAUCAUUCAAAUAUCU d.16.e.A.ambigua.fasta CGCAG---GGCUUUACGCC-GGCGAC-------GGAUCAUGUAAGUUCCU d.16.e.A.baicalensis.fasta CGCAC---GGCUUUAUGCC-GGCGUC-------GGAUCAGGUAAGUUCCU d.16.e.S.nipponica.fasta CGCAU---GGCUCCAUGCC-GGCGAC-------AGAUCAUAUAAGUUUCU d.16.e.C.radiatus.fasta UGUAU---GGUUUCAUACUUGAUGAC-------ACAUCAUCCAAGUUUCC d.16.e.C.criophilum.fasta CGCAU---GACCUUGUGUU-GGCGGU-------AGAUCAUUCGAGUUUCU d.16.e.A.capitellata.fasta Y------------CC-GGUGGC-GAU-------GGAUCAUUCAAGUUUCU d.16.e.S.pupula.fasta CGCAU---GGCAACU-GCCGGC-GAU-------GGAUCAUUCAAGUUUCU d.16.e.T.antarctica.fasta CGCAU---G-CCUUU-GGCGGC-GAU-------GGAUCAUUCAAGUUUCU d.16.e.E.triangulatum.fasta CGCAC---GGCC-UU-GCUGGC-GAU-------GGAUCAUUCAAGUUUCU d.16.e.A.bongranii.fasta CGCAU---GCCUUCG-GGCGGC-GAU-------GGAUCUUUCAAGUUUCU d.16.e.Pseudogomphonema.sp.fas CGCAU---GCCUUCG-GGCGGC-GAU-------GGAUCAUUCAAGUUUCU d.16.e.D.tenue.fasta CGCAU---GGCUUUACGCCGGC-GAU-------GGAUCAUUCAAGUUUCU d.16.e.G.marina.fasta CGCAU---GGCUUUGCGCCGGC-GAU-------GGAUCAUUCAAGUUUCU d.16.e.Thalassionema.sp.fasta CGCAC---AGCGUCA-GCUGGC-GAU-------GGAUCAUUCAAGUUUCU d.16.e.R.belgicae.fasta UGCAU---GGCGU-AUGCCGGC-AAU-------GGAUCAUUCAAGUUUCU d.16.e.Undatella.sp.fasta CGCAU---GGCUUUUUGCCGGCAGAU-------GGAUCAUUCAAGUUUCU d.16.e.C.belgica.fasta CGCAU---GGCCUUGUGCUGGC-GAU-------GGAUCAUUCAAGUUUCU d.16.e.O.sinensis.fasta CGCAU---GCUCUACGGCCGGC-GAU-------GCAUCAUUCAAGUUUCU d.16.e.D.brightwellii.fasta GCACU---GGCUCCAUGCCGGC-GAU-------GGAUCAUUCAAGUUUCU d.16.e.L.undulatum.fasta CGCAU---GGCUCUAUGCCGGC-GAU-------GGAUCAUUCAAGUUUCU d.16.e.T.eccentrica.fasta CGCAU---GGCUCCAUGCCGGC-GAU-------GGAUCAUUCAAGUUUCU d.16.e.T.pseudonana.fasta CGCAU---GGCUCCAUGCCGGC-GAU-------GGAUCAUUCAAGUUUCU d.16.e.S.costatum.fasta UGCAU---GCACAUGUUGCGGC-AAU-------GGAUCAUUCAAGUUUCU d.16.e.P.laevis.fasta CGCAU---GGCCUCGUGCCGGC-GAU-------GGAUCAUUCAAGUUUCU d.16.e.L.borealis.fasta CGCAU---GGCUCUAUGCCGGC-GAU-------GGAUCAUUGAAGUUUCU d.16.e.P.pseudodenticulata.fas CGCAU---GGAUCUAUUCCGGC-GAU-------GGAUCAUUCAAGUUUCU d.16.e.B.mediterranea.fasta CGCAU---GGCCUUGAGCCGGC-GAC-------AGAUCAUUCAAGUUUCU d.16.e.B.pacifica.fasta CGCAU---GGCCUCGAGCCGGC-GAC-------AGAUCAUUCAAGUUUCU d.16.e.L.minuta.fasta CGCAG---UGGCUUCGGCCGGC-GAU-------GAAUCAUUCAAGUUUCU d.16.e.L.danicus.fasta CGCAU---CGACUUGUUCGGGC-GAU-------GGAUCAUUCGGGAUUCU d.16.e.Chaetoceros.sp.fasta UGCAU---UGC------------AAC-------AUUUCAUUCAAGUUUCU d.16.e.A.invadans.fasta CGCUC---UAA---------GC-GAU-------AAGUCGAUUGAGUUUCU d.16.e.L.giganteum.fasta CGCAC---UUGU--------GC-GGU-------AAAUCGAUUGAGUUUCU d.16.e.M.varians.fasta CAUAC---AGCUUUAAGCUGUU-GAC-------AAGUCAUAUAAGUUUCU d.16.e.B.hominis.fasta CGCAU---G--CUUAAUGUAGC-GAU-------GAGUCUUUCAAGUUUCU d.16.e.P.marinus.fasta CGCAC--GG--CUUG-UCCGGC-GAU-------GGACCAUUCAAGUUUCU d.16.e.T.gondii.fasta CGCGU--UGACUUCG-GUCUGC-GAC-------GGAUCAUUCAAGUUUCU d.16.e.A.fundyense.fasta UACAU--GG-CAACA-GCUGGU-GAU-------AAUUCAUUCCAGUUUCU d.16.e.B.bigemina.fasta CGC-------UUUU------GC-GAU-------GUUCCAUUCAAGUUUCU d.16.e.B.canis.fasta CGC-------UUUU-----AGC-GAU-------GGACCAUUCAAGUUUCU d.16.e.Babesia.sp.OKD.fasta CGC-------UUUU-----AGC-GAU-------GGACCAUUCAAGUUUCU d.16.e.B.microti.1.fasta CGCAU--GG-CUUU--GCCGGC-GAU-------GUAUCAUUCAAGUUUCU d.16.e.B.microti.2.fasta CGCAU--GG-CUUU--GCCGGC-GAU-------GUAUCAUUCAAGUUUCU d.16.e.B.microti.3.fasta CGCAU--GG-CUUU--GCCGGC-GAU-------GUAUCAUUCAAGUUUCU d.16.e.B.microti.4.fasta CGCAU--GG-CUUU--GCCGGC-GAU-------GUAUCAUUCAAGUUUCU d.16.e.B.microti.5.fasta CGCAU--GG-CUUU--GCCGGC-GAU-------GUAUCAUUCAAGUUUCU d.16.e.B.rodhaini.fasta CGCAU--GG-CUUU--GCCGGC-GAU-------GUAUCAUUCAAGUUUCU d.16.e.B.gibsoni.fasta CGCAU--GG-CUUUU-GCCGGC-GAU-------AAUUCAUUCAAGUUUCU d.16.e.B.bovis.fasta CGC-------UUUU-----UGC-GAU-------AUUCCAUUCAAGUUUCU d.16.e.J.libera.fasta CGCAU--GGCCCCAGUGCCGGC-GAU-------GAACCAAUCAAGUUUCU d.16.e.R.americana.fasta CGCUC--AA-------GCGAGU-GGU-------GAACCAAUCGAGUUUCU d.16.e.B.ostreae.fasta CGCGU--UGGCUUCG--CCAGC-GAC-------AUGUCAUUCAAGUUUCU d.16.e.A.dasyae.fasta CGCUC---GUA------AGAGC-GAC-------GCAUCGUUCAAAUUUCU d.16.e.A.hermannii.fasta CGCAC---GCA------AGUGC-GAC-------GCAUCGUUCAAAUUUCU d.16.e.N.helminthoides.fasta CGCAC---UCU-------GUGC-GAC-------GCAUCGUUCAAGUUUCU d.16.e.B.gelatinosum.fasta CGCAC---GCA------AGUGC-GAC-------GCAUCGUUCAAAUUUCU d.16.e.N.tortuosa.fasta CGCAC---GCA------AGUGC-GAC-------GCAUCGUUCAAGUUUCU d.16.e.T.hispida.fasta CGCGC---GAAAUUGAUUGCGC-GAC-------GCAUCGUUCAAGUUUCU d.16.e.T.violacea.4.fasta CGCGC---GAAAUUGAUUGCGC-GAC-------GCAUCGUUCAAGUUUCU d.16.e.T.violacea.1.fasta CGCAC---GCG-----CAGUGC-GAC-------GCAUCGUUCAAGUUUCU d.16.e.T.violacea.2.fasta CGCAC---GCG-----CAGUGC-GAC-------GCAUCGUUCAAGUUUCU d.16.e.N.shawii.fasta CGCAC---GCA------AGUGC-GAC-------GCAUCGUUCAAGUUUCU d.16.e.B.investiens.fasta CGAAC---GCA------AGUUC-GAC-------GCAUCGUUCAAAUUUCU d.16.e.B.macrosporum.fasta CGCAC---UGUA----UGGUGC-GAC-------ACAUCGUUCAAAUUUCU d.16.e.A.plicata.fasta CGCGC---CUUG-----UGCGC-GAC-------GCAUCGUUCAAAUUUCU d.16.e.C.officinalis.fasta CGC-U---G-GCGAAAGCCGGC-GAC-------GCACCGUUCAAAUUUCU d.16.e.R.carriebowensis.fasta CGC-U---GCAUGCAUUGCGGC-GAC-------GCAUCGUUCAAAUUUCU d.16.e.B.hamifera.fasta CGCAC---UUAUGU------GC-GAC-------GCAUCGUUCAAAUUUCC d.16.e.G.vagum.fasta CGCAC---U-AUGU------GC-GAC-------GCAUCGUUCAAAUUUCU d.16.e.C.crispus.fasta CGCAC---GUUAGU------GC-GAC-------GCAUCGUUCAAAUUUCU d.16.e.H.plana.fasta UGCAC---UUUUGU------GC-GAC-------GCAUCGUUCAAAUUUCU d.16.e.R.leptophylla.fasta UGCAC---UUUCGU------GC-GAC-------GCAUCGUUCAAAUUUCU d.16.e.P.pulvinata.fasta UGCAA---UCAUGUU--U-UGC-GAC-------ACAUCGUUCAAAUUUCU d.16.e.C.rubrum.fasta UGCAC---AUUUUUU--G-UGC-GAC-------GCAUCGUUCAAAUUUCU d.16.e.Gracilariopsis.sp.fasta CGCAC---AUUGUU------GC-GAC-------GCACCGUUCAAAUUUCU d.16.e.B.moritziana.fasta CACAC---UUUUAUG--UGUGU-GAC-------GCUCCGAUCAAAUUUCU d.16.e.H.rubra.fasta UGCAC---UUUUU----AGUGC-GAC-------ACCCCGUUCAAAUUUCU d.16.e.D.grisea.fasta CGCAU---GCAAUAU--GCGGC-GAC-------GUUUCAUUCAAAUUUCU d.16.e.N.fowleri.fasta CUUUCAGGUUUGCUUUUUCUAGUGGC-------CAGGCAGAGGUGUUUCU d.16.e.N.gruberi.fasta CUUUCAGGUUUGCUUUUUCUAGUGGC-------CAGGCAGAGGAGUUUCU a.16.e.Hexamita.sp.fasta UGUUA--------------GGC----------AGGCACGAUCAGCUUC-U d.16.e.T.foetus.fasta CCUCC--------------GGG----------CACACCAAUCGAUUGAGC d.16.e.A.khaliulini.fasta --------------------------------------GGAUGUG----- d.16.e.E.aedis.fasta --------------------------------------GUGGGUG----- d.16.e.A.connecticus.fasta --------------------------------------GGAUGUG----- d.16.e.I.barri.fasta --------------------------------------GGAUGUG----- d.16.e.A.ferocious.fasta --------------------------------------GGAUGUG----- d.16.e.Amblyospora.sp.fasta --------------------------------------GGGCGUG----- d.16.e.C.lunata.fasta --------------------------------------GAGUGUG----- d.16.e.P.anophelis.fasta --------------------------------------GGCUCUG----- d.16.e.Hazardia.sp.fasta --------------------------------------GUUCCUG----- d.16.e.H.milleri.fasta --------------------------------------GUUCCUG----- d.16.e.P.simulii.fasta --------------------------------------GUUUCUG----- d.16.e.W.palustris.fasta --------------------------------------GUUUCUG----- d.16.e.Nosema.sp.03.fasta --------------------------------------GAAUAAG----- d.16.e.Nosema.sp.05.fasta --------------------------------------GAAUAAG----- d.16.e.Endoreticulatus.sp.fast --------------------------------------GAAUAAG----- d.16.e.Nosema.sp.02.fasta --------------------------------------GAAUAAG----- d.16.e.N.spodopterae.fasta --------------------------------------GAAUAAG----- d.16.e.N.trichoplusiae.fasta --------------------------------------GAAUAAG----- d.16.e.N.bombycis.27.fasta --------------------------------------GAAUAAG----- d.16.e.N.bombycis.02.fasta --------------------------------------GAAUAAG----- d.16.e.V.imperfecta.fasta --------------------------------------GAAUAAG----- d.16.e.N.furnacalis.fasta --------------------------------------GAAUAAG----- d.16.e.Microsporidium57864.fas --------------------------------------GAGUGAG----- d.16.e.Vairimorpha.sp.C21.fast --------------------------------------GAGUAAG----- d.16.e.N.oulemae.fasta --------------------------------------GAGUGAG----- d.16.e.N.necatrix.fasta --------------------------------------GAGUGAG----- d.16.e.V.necatrix.fasta --------------------------------------GAGUGAG----- d.16.e.N.apis.fasta --------------------------------------GAGUGAG----- d.16.e.O.occidentalis.fasta --------------------------------------GAGUGAG----- d.16.e.Microsporidium.sp.DP119 --------------------------------------GACGCAA----- d.16.e.V.corneae.fasta --------------------------------------GACGCAG----- d.16.e.A.michaelis.fasta --------------------------------------GAAGAAGCACUC d.16.e.T.contejeani.fasta --------------------------------------GAGAUUG----- d.16.e.E.hellem.fasta ------------------------------------CCGAGUAAGUUGUA d.16.e.Encephalitozoon.sp.fast ------------------------------------CCAAGUAAGCUGUA d.16.e.E.cuniculi.fasta -------------------------------------CAAGUAAGUUGUG d.16.e.O.colligata.fasta ------------------------------------CGGAGUGUGUUGUA d.16.e.E.salmonis.fasta --------------------------------------GCUGCAA----- d.16.e.N.salmonis.fasta --------------------------------------GCUGCAA----- d.16.e.Enterocytozoonidae.sp.f --------------------------------------GACGCAA----- d.16.e.E.bieneusi.fasta --------------------------------------GGCGCAA----- d.16.e.B.algerae.fasta --------------------------------------GCAUUGGUUUCU d.16.e.T.solenopsae.fasta --------------------------------------GGAUUGGUUUCU d.16.e.V.acridophagus.fasta --------------------------------------GUGUUAGUUUCU d.16.e.Bacillidium.sp.fasta ------------------------------------ACGAUUAAGUUUCU d.16.e.P.cristatellae.fasta ------------------------------------ACGACUAAGUUUCU d.16.e.Pleistophora.sp.fasta --------------------------------------GACGCAG----- d.16.e.O.operophterae.fasta --------------------------------------GACGCAG----- d.16.e.F.magnivora.fasta --------------------------------------GACGCCG----- d.16.e.G.atherinae.fasta ------------------------------------GAGAGUAAGAAGCC d.16.e.Ichthyosporidium.sp.fas ------------------------------------GAGAGUAAGACGCC d.16.e.L.acerinae.fasta ------------------------------------AAGAGUAAGACGCC d.16.e.H.anguillarum.fasta ------------------------------------AAGAGUAAGGAGCC d.16.e.P.mirandellae.fasta ------------------------------------GAGAGUAAGGAGCC d.16.e.T.hominis.fasta ------------------------------------GAGAGUAAGGAGCC d.16.e.V.culicis.fasta ------------------------------------GAGAGUAAGGAGCC d.16.e.P.hippoglossoideos.fast ------------------------------------GAGAGUAAGGAGCC d.16.e.Microgemma.sp.fasta ------------------------------------GAGAGUAAGAAGCC d.16.e.S.lophii.fasta ------------------------------------GAGAGUAAGAAGCC d.16.e.Pleistophora.sp.LS.fast ------------------------------------GAGAUUAAGGGACC d.16.e.D.gammarellum.fasta ------------------------------------AAGAGUAAGAUGCC d.16.e.M.prosopium.fasta ------------------------------------GAGAAUAAGGGGCC d.16.e.A.scoticae.fasta CG-------------------------------------GCGAAGAUGCC d.16.e.P.whitei.fasta CGC-----------------------------GGCCGCGGCGGAGUCGCU a.16.c.C.coccineum.fasta -------------------------------------------------- a.16.c.C.ruber.fasta -------------------------------------------------- d.16.c.N.tabacum.fasta -------------------------------------------------- d.16.c.S.oleracea.fasta -------------------------------------------------- d.16.c.Z.mays.fasta -------------------------------------------------- d.16.c.M.polymorpha.fasta -------------------------------------------------- d.16.c.R.communis.fasta -------------------------------------------------- d.16.c.C.vulgaris.fasta -------------------------------------------------- d.16.c.P.wickerhamii.fasta -------------------------------------------------- d.16.c.P.minor.fasta -------------------------------------------------- d.16.c.N.olivacea.fasta -------------------------------------------------- d.16.c.P.parkeae.fasta -------------------------------------------------- d.16.c.C.reinhardtii.fasta -------------------------------------------------- b.16.m.A.castellanii.fasta ----------------------------------AAUUCCAUUACUUGUA d.16.c.P.thurberi.fasta -------------------------------------------------- b.16.m.C.crispus.fasta -------------------------------------------------- d.16.c.T.gondii.fasta -------------------------------------------------- b.16.m.N.crassa.fasta ---------GAUGUAAUAAAAAAAAUUUUUUUUAAUUUUAUAUUACAUCA b.16.m.P.anserina.fasta ------------------------------------UUUAC-UCACUUUA b.16.m.P.chrysogenum.fasta -------------------------------------------------- b.16.m.E.nidulans.fasta -------------------------------------------------- b.16.m.S.cerevisiae.fasta ----------------------------------------------AGUA b.16.m.W.saturnus.m.fasta -----------AAAUAUAAUAAUAAUUAAAUUAUUAUUUUAGAGGAAUUA b.16.m.P.minor.fasta -------------------------------------------------- d.16.c.P.falciparum.fasta -------------------------------------------------- d.16.c.B.bovis.fasta -------------------------------------------------- b.16.m.T.pyriformis.fasta -------------------------------------------------- d.16.m.S.sinuspaulianus.fasta CAGUAGUUUUAAGACAUGCAAAUCGUUAUUUCUGAAAGUAAAUUUUUAUU b.16.m.P.tetraurelia.fasta --------------UUUAGUUGCAGCCANGCUGCAUACUUGGAUGUAAGA b.16.m.D.discoideum.fasta -------------------------------------------------- d.16.m.P.polycephalum.fasta ----------------------------------------------GUUU b.16.m.P.littoralis.fasta -------------------------------------------------- b.16.m.P.wickerhamii.fasta -------------------------------------------------- d.16.c.H.africana.fasta -------------------------------------------------- d.16.c.C.fragile.fasta -------------------------------------------------- d.16.c.C.sertularioides.fasta -------------------------------------------------- d.16.c.C.humicola.fasta -------------------------------------------------- d.16.c.P.uvella.fasta -------------------------------------------------- a.16.c.G.nostochinearum.fasta -------------------------------------------------- a.16.c.G.wittrockiana.fasta -------------------------------------------------- d.16.c.C.paradoxa.fasta -------------------------------------------------- d.16.y.C.paradoxa.fasta -------------------------------------------------- d.16.c.Cryptomonas.sp.fasta -------------------------------------------------- d.16.c.P.palmata.fasta -------------------------------------------------- d.16.c.H.akashiwo.fasta ---------------------------------------------UUUUA d.16.c.S.pseudocostatum.fasta -------------------------------------------------- d.16.c.P.littoralis.fasta -------------------------------------------------- d.16.c.C.caldarium.fasta -------------------------------------------------- a.16.c.E.huxleyi.fasta -------------------------------------------------- d.16.c.E.gracilis.fasta -------------------------------------------------- d.16.b.Anabaena.sp.fasta -------------------------------------------------- d.16.b.Chlorogloeopsis.PCC7518 -------------------------------------------------- d.16.b.Synechococcus.sp.fasta -------------------------------------------------- d.16.b.Synechocystis.PCC6803.G -------------------------------------------------- d.16.b.O.agardhii.fasta -------------------------------------------------- d.16.b.Pleurocapsa.7516.fasta -------------------------------------------------- d.16.b.M.aeruginosa.fasta -------------------------------------------------- b.16.m.C.reinhardtii.fasta -------------------------------------------------- d.16.m.C.eugametos.fasta -----------------------------------------------AAA b.16.m.M.senile.fasta -------------------------------------------------- d.16.b.S.pneumoniae.fasta ---------------------------------------------NNNNN d.16.b.S.pyogenes.fasta ---------------------------------------------NNNNN d.16.b.B.anthracis.fasta -------------------------------------------------- d.16.b.B.cereus.1.fasta -------------------------------------------------- d.16.b.E.faecalis.fasta -------------------------------------------------- d.16.b.E.faecium2.fasta -------------------------------------------------- d.16.b.L.monocytogenes.fasta -------------------------------------------------- d.16.b.B.subtilis.fasta -------------------------------------------------- d.16.b.B.subtilis.GEN.fasta -------------------------------------------------- d.16.b.B.halodurans.fasta -------------------------------------------------- d.16.b.S.aureus.fasta -------------------------------------------------- d.16.b.S.aureus.GEN.fasta -------------------------------------------------- d.16.b.L.lactis.GEN.fasta -------------------------------------------------- d.16.b.S.pyogenes.GEN.fasta -------------------------------------------------- d.16.b.L.acidophilus.fasta -------------------------------------------------- d.16.b.M.capricolum.fasta -------------------------------------------------- d.16.b.M.mycoides.fasta -------------------------------------------------- d.16.b.E.rhusiopathiae.fasta -------------------------------------------------- d.16.b.C.innocuum.fasta -------------------------------------------------- d.16.b.M.genitalium.fasta -------------------------------------------------C d.16.b.M.pneumoniae.GEN.fasta -------------------------------------------------- d.16.b.M.pneumoniae.fasta -------------------------------------------------- d.16.b.M.gallisepticum.fasta -------------------------------------------------- d.16.b.U.urealyticum.fasta -------------------------------------------------- d.16.b.U.urealyticum.GEN.fasta -------------------------------------------------- d.16.b.M.hyopneumoniae.fasta -------------------------------------------------- d.16.b.F.necrophorum.fasta -------------------------------------------------- d.16.b.F.nucleatum.fasta -------------------------------------------------- d.16.b.S.moniliformis.fasta -------------------------------------------------- d.16.b.C.botulinum.F.fasta -------------------------------------------------- d.16.b.C.tetani.fasta -------------------------------------------------- d.16.b.C.perfringens.fasta -------------------------------------------------- d.16.b.C.difficile.fasta -------------------------------------------------- d.16.b.E.brachy.fasta -------------------------------------------------G d.16.b.Epulopiscium.sp.fasta -------------------------------------------------- d.16.b.H.chlorum.fasta -------------------------------------------------- b.16.m.G.max.fasta ---------------------------------------------AUCAU b.16.m.O.berteriana.fasta ---------------------------------------------AUCAU b.16.m.S.cereale.fasta ---------------------------------------------AUCAU b.16.m.T.aestivum.fasta ---------------------------------------------AUCAU d.16.m.Z.mays.fasta -------------------------------------------------- b.16.m.M.polymorpha.fasta ---------------------------------------------AUCAU b.16.m.N.olivacea.fasta -------------------------------------------------- d.16.b.G.liquefaciens.fasta -------------------------------------------------- d.16.b.B.japonicum.fasta -------------------------------------------------- d.16.b.R.acidophilus.fasta -------------------------------------------------- d.16.b.A.caulinodans.fasta -------------------------------------------------- d.16.b.B.quintana.fasta -------------------------------------------------- d.16.b.M.loti.fasta -------------------------------------------------- d.16.b.A.tumefaciens.fasta -------------------------------------------------- d.16.b.B.bacilliformis.fasta -------------------------------------------------- d.16.b.B.henselae.fasta -------------------------------------------------- d.16.b.B.melitensis.fasta -------------------------------------------------- d.16.b.R.orientis.fasta -------------------------------------------------- d.16.b.Methylobacterium.sp.fas -------------------------------------------------- d.16.b.R.bellii.fasta -------------------------------------------------- d.16.b.R.felis.URRWXCal2.fasta ---------------------------------------------GACAG d.16.b.R.prowazekii.fasta -------------------------------------------------- d.16.b.R.prowazekii.GEN.fasta -------------------------------------------------- d.16.b.R.rickettsii.fasta -------------------------------------------------- d.16.b.A.calcoaceticus.fasta -------------------------------------------------- d.16.b.P.pacificensis.fasta -------------------------------------------------- d.16.b.C.marismortui.fasta -------------------------------------------------- d.16.b.H.halodenitrificans.fas -------------------------------------------------- d.16.b.P.aeruginosa.fasta -------------------------------------------------- d.16.b.P.aeruginosa.GEN.fasta -------------------------------------------------- d.16.b.Pseudomonas.sp.fasta -------------------------------------------------- d.16.b.P.putida.fasta -------------------------------------------------- d.16.b.C.burnetii.fasta -------------------------------------------------- d.16.b.M.capsulatus.fasta -------------------------------------------------- d.16.b.L.pneumophila.1.fasta -------------------------------------------------- d.16.b.L.pneumophila.2.fasta -------------------------------------------------- d.16.b.A.vinosum.fasta -------------------------------------------------- d.16.b.Beggiatoa.sp.fasta -------------------------------------------------- d.16.b.A.hydrophila.fasta -------------------------------------------------- d.16.b.S.putrefaciens.fasta -------------------------------------------------- d.16.b.C.freundii.fasta -------------------------------------------------- d.16.b.S.dysenteriae.1.fasta -------------------------------------------------- d.16.b.K.pneumoniae.fasta -------------------------------------------------- d.16.b.P.shigelloides.fasta -------------------------------------------------- d.16.b.Y.pestis.fasta -------------------------------------------------- d.16.b.Y.pseudotuberculosis.fa -------------------------------------------------- d.16.b.S.dysenteriae.2.fasta -------------------------------------------------- d.16.b.E.coli.0157G.GEN.fasta -------------------------------------------------- d.16.b.E.coli.EDL.GEN.fasta -------------------------------------------------- d.16.b.E.coli.fasta -------------------------------------------------- d.16.b.E.coli.K12.GEN.fasta -------------------------------------------------- h.16.b.E.coli.hlxnum.fasta -------------------------------------------------- m.16.b.E.coli.mhg.fasta -------------------------------------------------- s.16.b.E.coli.schem.fasta -------------------------------------------------- d.16.b.S.typhimurium.fasta -------------------------------------------------- d.16.b.S.marcescens.fasta -------------------------------------------------- d.16.b.E.tarda.fasta -------------------------------------------------- d.16.b.P.vulgaris.fasta -------------------------------------------------- d.16.b.V.cholerae4.fasta -------------------------------------------------- d.16.b.V.cholerae5.fasta -------------------------------------------------- d.16.b.V.cholerae2.fasta -------------------------------------------------- d.16.b.V.cholerae6.fasta -------------------------------------------------- d.16.b.V.cholerae.fasta -------------------------------------------------- d.16.b.V.cholerae.GEN.fasta -------------------------------------------------- d.16.b.V.parahaemolyticus.fast -------------------------------------------------- d.16.b.H.influenzae7.fasta -------------------------------------------------- d.16.b.H.influenzae8.fasta -------------------------------------------------- d.16.b.H.influenzae6.fasta -------------------------------------------------- d.16.b.H.influenz.fasta -------------------------------------------------- d.16.b.H.influenzae.fasta -------------------------------------------------- d.16.b.P.multocida.fasta -------------------------------------------------- d.16.b.P.multocida.GEN.fasta -------------------------------------------------- d.16.b.X.albilineans.fasta -------------------------------------------------- d.16.b.X.campestris.fasta -------------------------------------------------- d.16.b.X.fastidiosa.GEN.fasta -------------------------------------------------- d.16.b.D.nodosus.fasta -------------------------------------------------- d.16.b.F.tularensis.fasta -------------------------------------------------- d.16.b.B.parapertussis.fasta -------------------------------------------------- d.16.b.B.pertussis.fasta -------------------------------------------------- d.16.b.B.bronchiseptica2.fasta -------------------------------------------------- d.16.b.u.proteobacterium.fasta -------------------------------------------------- d.16.b.B.mallei.fasta -------------------------------------------------- d.16.b.Burkholderia.sp.fasta -------------------------------------------------- d.16.b.N.meningitidis.MD58.GEN -------------------------------------------------- d.16.b.N.meningitidis.Z2491.GE -------------------------------------------------- d.16.b.N.gonorrhoeae.fasta -------------------------------------------------- d.16.b.C.testosteroni.fasta -------------------------------------------------- d.16.b.D.desulfuricans.fasta -------------------------------------------------- d.16.b.M.xanthus.fasta -------------------------------------------------- d.16.b.D.thermophilus.fasta -------------------------------------------------- d.16.b.B.burgdorferi.fasta -------------------------------------------------- d.16.b.B.burgdorferi.GEN.fasta -------------------------------------------------- d.16.b.B.hermsii.fasta -------------------------------------------------- d.16.b.S.aurantia.fasta -------------------------------CCUUGGAGCAAUCCAAGGU d.16.b.T.pallidum.A.fasta -------------------------------------------------- d.16.b.L.illini.fasta --------------------------------UAAUCUAUCGCAAGAUAG d.16.b.L.interrogans.fasta -------------------------------------------------- d.16.b.C.trachomatis.GEN.fasta -------------------------------------------------- d.16.b.C.trachomatis.L2.fasta -------------------------------------------------- d.16.b.C.muridarum.fasta -------------------------------------------------- d.16.b.C.pneumoniae.AR39.fasta -------------------------------------------------- d.16.b.C.pneumoniae.fasta -------------------------------------------------- d.16.b.C.pneumoniae.J138.fasta -------------------------------------------------- d.16.b.C.pneumoniae.CWL029.fas -------------------------------------------------- d.16.b.C.psittaci.fasta -------------------------------------------------- d.16.b.D.radiodurans.1.fasta -------------------------------------------------- d.16.b.D.radiodurans.GEN.fasta -------------------------------------------------- d.16.b.B.fragilis.fasta ------------------------------------------------AC d.16.b.P.gingivalis.fasta -------------------------------------------------- d.16.b.C.vibrioforme.fasta -------------------------------------------------- d.16.b.C.jejuni.fasta -------------------------------------------------- d.16.b.C.jejuni.GEN.fasta -------------------------------------------------- d.16.b.C.sputorum.fasta GAACAACACUUAGAAAUGAGUGCUAAUACCUCAUACUCCAAUUAUACAUA d.16.b.H.pylori.26695.GEN.fast -------------------------------------------------- d.16.b.H.pylori.J99.GEN.fasta -------------------------------------------------- d.16.b.H.pylori2.fasta -------------------------------------------------- d.16.b.A.capsulatum.fasta -------------------------------------------------- d.16.b.H.foetida.fasta -------------------------------------------------- d.16.b.A.globiformis.fasta -------------------------------------------------- d.16.b.M.luteus.fasta -------------------------------------------------- d.16.b.Frankia.sp.fasta -------------------------------------------------- d.16.b.S.bottropensis.fasta -------------------------------------------------- d.16.b.S.scabiei.fasta -------------------------------------------------- d.16.b.S.neyagawaensis.fasta -------------------------------------------------- d.16.b.S.diastatochromogenes.f -------------------------------------------------- d.16.b.Streptomyces.sp.fasta -------------------------------------------------- d.16.b.S.acidiscabies.fasta -------------------------------------------------- d.16.b.S.griseus.fasta -------------------------------------------------- d.16.b.S.ornatus.fasta -------------------------------------------------- d.16.b.S.subrutilus.fasta -------------------------------------------------- d.16.b.S.bikiniensis.fasta -------------------------------------------------- d.16.b.S.galbus.fasta -------------------------------------------------- d.16.b.S.hygroscopicus.fasta -------------------------------------------------- d.16.b.S.lincolnensis.fasta -------------------------------------------------- d.16.b.S.coelicolor.fasta -------------------------------------------------- d.16.b.S.tendae.fasta -------------------------------------------------- d.16.b.S.ambofaciens.fasta -------------------------------------------------- d.16.b.S.eurythermus.fasta -------------------------------------------------- d.16.b.S.nodosus.fasta -------------------------------------------------- d.16.b.S.sampsonii.fasta -------------------------------------------------- d.16.b.S.glaucescens.fasta -------------------------------------------------- d.16.b.S.pseudogriseolus.fasta -------------------------------------------------- d.16.b.S.caelestis.fasta -------------------------------------------------- d.16.b.S.bluensis.fasta -------------------------------------------------- d.16.b.S.espinosus.fasta -------------------------------------------------- d.16.b.S.mashuensis.fasta -------------------------------------------------- d.16.b.S.rimosus.fasta -------------------------------------------------- d.16.b.S.limosus.fasta -------------------------------------------------- d.16.b.S.odorifer.fasta -------------------------------------------------- d.16.b.S.felleus.fasta -------------------------------------------------- d.16.b.S.albidoflavus.fasta -------------------------------------------------- d.16.b.S.gougerotii.fasta -------------------------------------------------- d.16.b.S.rutgersensis.fasta -------------------------------------------------- d.16.b.S.intermedius.fasta -------------------------------------------------- d.16.b.S.thermodiastaticus.fas -------------------------------------------------- d.16.b.S.thermoviolaceus.fasta -------------------------------------------------- d.16.b.S.thermovulgaris.1.fast -------------------------------------------------- d.16.b.S.thermovulgaris.2.fast -------------------------------------------------- d.16.b.S.macrosporus.fasta -------------------------------------------------- d.16.b.S.megasporus.fasta -------------------------------------------------- d.16.b.S.thermolineatus.fasta -------------------------------------------------- d.16.b.M.tuberculosis.2.fasta -------------------------------------------------- d.16.b.M.tuberculosis.3.fasta -------------------------------------------------- d.16.b.M.avium.fasta -------------------------------------------------- d.16.b.M.leprae.fasta -------------------------------------------------- d.16.b.M.leprae.GEN.fasta -------------------------------------------------- d.16.b.M.tuberculosis.CDC1551. -------------------------------------------------- d.16.b.M.tuberculosis.GEN.fast -------------------------------------------------- d.16.b.N.asteroides.fasta -------------------------------------------------- d.16.b.R.erythropolis.fasta -------------------------------------------------- d.16.b.C.diphtheriae.fasta -------------------------------------------------- d.16.b.A.israelii.fasta -------------------------------------------------- d.16.b.B.hyodysenteriae.fasta -------------------------------------------------- d.16.b.G.subterranea.fasta -------------------------------------------------- d.16.b.P.miotherma.fasta -------------------------------------------------- d.16.b.B.andersonii.fasta -------------------------------------------------- d.16.b.H.aurantiacus.fasta -------------------------------------------------- d.16.b.Leptospirillium.sp.fast -------------------------------------------------- d.16.b.A.aeolicus.fasta -------------------------------------------------- d.16.b.A.pyrophilus.fasta -------------------------------------------------- d.16.b.T.maritima.fasta -------------------------------------------------- d.16.b.T.maritima.GEN.fasta -------------------------------------------------- n.16.b.T.thermophilus.2.num.fa -------------------------------------------------- s.16.b.T.thermophilus.2.schem. -------------------------------------------------- d.16.b.T.thermophilus.2.fasta -------------------------------------------------- s.16.b.T.thermophilus.1.schem. -------------------------------------------------- n.16.b.T.thermophilus.1.num.fa -------------------------------------------------- d.16.b.T.thermophilus.1.fasta -------------------------------------------------- d.16.b.T.aquaticus.fasta -------------------------------------------------- d.16.b.T.roseum.fasta -------------------------------------------------- d.16.b.P.marina.fasta -------------------------------------------------- d.16.b.P.staleyi.fasta -------------------------------------------------- d.16.b.P.Schlesner.fasta -------------------------------------------------- d.16.b.G.obscuriglobus.1.fasta -------------------------------------------------- d.16.b.I.pallida.fasta -------------------------------------------------- d.16.a.P.abyssi.fasta -----------------------------------------------CGU d.16.a.P.horikoshii.fasta -------------------------------------------------- d.16.a.P.furiosus.fasta -------------------------------------------------- d.16.a.T.celer.fasta -------------------------------------------------- d.16.a.A.fulgidus.fasta -------------------------------------------------- d.16.a.N.equitans.fasta -------------------------------------------------- d.16.a.A.pernix.K1.fasta -------------------------------------------------- d.16.a.P.occultum.fasta -------------------------------------------------- d.16.a.T.tenax.fasta -------------------------------------------------- d.16.a.S.acidocaldarius.fasta -------------------------------------------------- d.16.a.S.solfataricus.fasta -------------------------------------------------- d.16.a.S.solfataricus.2.fasta -------------------------------------------------- d.16.a.M.thermautotrophicus.1. -------------------------------------------------- d.16.a.M.thermautotrophicus.2. -------------------------------------------------- d.16.a.M.formicicum.fasta -------------------------------------------------- d.16.a.M.vannielii.fasta -------------------------------------------------- d.16.a.H.marismortui.rrnA.fast -------------------------------------------------- d.16.a.H.marismortui.rrnB.fast -------------------------------------------------- d.16.a.Halobacterium.sp.fasta -------------------------------------------------- d.16.a.N.bangense.fasta -------------------------------------------------- d.16.a.N.innermongoliae.fasta -------------------------------------------------- d.16.a.H.volcanii.fasta -------------------------------------------------- d.16.a.M.hungatei.fasta -------------------------------------------------- d.16.a.P.torridus.fasta -------------------------------------------------- d.16.a.T.acidophilum.fasta -------------------------------------------------- a.16.e.G.ardeae.fasta GC--GGCAUCA---CCCCGCGGGCACGGUCGCGGCGUGCCCGGGGUCUCA d.16.e.G.intestinalis.fasta GG--GGCAUCA---CCCGGUCGGCGCGGUCGCGGCGCGCCGAGGGCCCGA a.16.e.G.muris.fasta GA--GGUAUUA---CCUAGUCGGUAGAGUAGUGGUCUACGGAGGGGAUGA d.16.e.A.bracteata.fasta GA--CCUAUUA---GCUUGAUGGCGCGGUAAGGGCGGGCCAUGGCGACGA d.16.e.Glomus.sp.W3349.fasta GC--CCUAUCA-ACUUUCGAUGGUAGGAUAGAGGCCUACCAUGGUGGUAA d.16.e.S.cerradensis.fasta GC--CCUAUCA-ACUUUCGAUGGUAGGAUAGAGGCCUACCAUGGUUUUAA a.16.e.G.intraradices.fasta GC--CCUAUCA-ACUUUCGAUGGUAGGAUAGAGGCCUACCAUGGUGGUAA d.16.e.S.culisetae.fasta GC--CCUAUCA-ACUUUCGAUGGUAGUAUAGAGGACUACCAUGGUGGUAA a.16.e.P.balamuthi.fasta GA--CCUAUCA-ACU--CGAUGGUAGGAUAGUGGCCUACCAUGGUUAUAA d.16.e.A.flavus.fasta GC--CCUAUCA-ACUUUCGAUGGUAGGAUAGUGGCCUACCAUGGUGGCAA d.16.e.T.caries.fasta GC--CCUAUCA-ACUGUCGAUGGUAGGAUAGAGGCCUACCAUGGUUGCAA d.16.e.M.circinelloides.fasta GC--CCUAUCAUGGUUGAGAUUGUAAGAUAGAGGCUUACAAUGCCUACAA d.16.e.M.racemosus.fasta GC--CCUAUCAUGGUUGAGAUUGUAAGAUAGAGGCUUACAAUGCCUACAA d.16.e.R.oryzae.fasta GC--CCUAUCAUGGUUGAGAUUGUAAGAUAGAGGCUUACAAUGCCUACAA a.16.e.M.edulis.fasta GC--CCUAUCA-ACUUUCGAUGGUACGUGAUAUGCCUACCAUGGUUGUAA a.16.e.P.magellanicus.fasta GA--CCUAUCA-ACUUUCGAUGGUACGUGCUAUGCCUACCAUGGUUGUAA b.16.e.E.granulosus.fasta GC--CCUAUCA-ACUUUCGAUGGUAGGUGACCUGCCUACCAUGGUGGUAA d.16.e.D.melanogaster.fasta GC--CCUAUCA-ACUUUUGAUGGUAGUAUCUAGGACUACCAUGGUUGCAA b.16.e.C.koreana.fasta GC--CUUAUCA-ACUGUCGAUGGUAGGUUAUGCGCCUACCAUGGUUGUAA b.16.e.A.australis.fasta GC--CUUAUCA-ACUUUCGAUGGUAGGUUAUGCGCCUACCAUGGUCGUUA b.16.e.O.utahensis.fasta GA--CUUAUCA-ACUGUCGAUGGUAGGCUCUGCGCCUACCAUGGUUGUAA b.16.e.A.salina.fasta GC--CUUAUCA-ACUUUCGAUGGUAGGCUAUGCGCCUACCAUGGUUGCAA d.16.e.M.musculus.fasta GC--CCUAUCA-ACUUUCGAUGGUAGUCGCCGUGCCUACCAUGGUGACCA d.16.e.R.norvegicus.fasta GC--CCUAUCA-ACUUUCGAUGGUAGUCGCCGUGCCUACCAUGGUGACCA d.16.e.H.sapiens.fasta GC--CCUAUCA-ACUUUCGAUGGUAGUCGCCGUGCCUACCAUGGUGACCA d.16.e.O.cuniculus.fasta GC--CCUAUCA-ACUUUCGAUGGUAGUCGCCGUGCCUACCAUGGUGACCA d.16.e.X.borealis.fasta GC--CCUAUCA-ACUUUCGAUGGUACUUUCUGCGCCUACCAUGGUGACCA d.16.e.X.laevis.fasta GC--CCUAUCA-ACUUUCGAUGGUACUUUCUGCGCCUACCAUGGUGACCA d.16.e.A.castellanii.fasta GC--CCUAUCA-ACUUUCGAUGGUAGGAUAGAGGCCUACCAUGGUCGUAA d.16.e.B.mandrillaris.fasta GC--CCUAUCA-ACUUUCGAUGGUAGUCGCCGUGCCUACCAUGGUCGUAA d.16.e.P.falciparum.A.fasta GA--CCUAUCA-GCUUUUGAUGUUAGGGUAUUGGCCUAACAUGGCUAUGA d.16.e.P.falciparum.S.fasta GA--CCUAUCA-GCUUUUGAUGUUAGGGUAUUGACCUAACAUGGCUAUGA d.16.e.P.vivax.A.fasta GA--CCUAUCA-GCUUUUGAUGUUAGGGUAUUGGCCUAACAUGGCUAUGA d.16.e.P.vivax.O.fasta GA--CCUAUCA-GCUUUUGAUGUUAGGGUAUUGGCCUAACAUGGCUAUGA d.16.e.P.vivax.S.fasta GA--CCUAUCA-GCUUUUGAUGUUAGGGUAUUGGCCUAACAUUGCUAUGA d.16.e.E.histolytica.fasta GA--UCUAUCA-A--UCAGUUGGUAGUAUCGAGGACUACCAAGAUUAUAA d.16.e.I.hoferi.fasta GC--CCUAUCA-ACUUUCGGUGGUAAGGUAUUGGCUUACCAUGGUUCCAA d.16.e.Dermocystidium.sp.fasta GC--CCUAUCA-ACUUUCGAUGGUAAGGUAUUGGCUUACCAUGGUCCCAA d.16.e.S.destruens.fasta GC--CCUAUCA-ACUUUCGAUGGUAAGGUAGUGGCUUACCAUGGUUGCAA d.16.e.A.unguiculata.fasta GC--CCUAUCA-ACUUUCGACGGUAGGGUAUUGGCCUACCGUGGUUGCAA d.16.e.D.grandis.fasta GC--CCUAUCA-ACUUUCGAUGGUAAGGUAGUGGCUUACCAUGGUUGCAA d.16.e.A.macrogynus.fasta GC--CCUAUCA-ACUGUCGAUGGUAGGAUAGAGGCCUACCAUGGUGAUAA d.16.e.B.emersonii.fasta GC--CCUAUCA-ACUUUCGACGGUAGGAUAGAGGCCUACCGUGGUGAUAA d.16.e.C.albicans.fasta GC--CCUAUCA-ACUUUCGAUGGUAGGAUAGUGGCCUACCAUGGUUUCAA d.16.e.S.cerevisiae.fasta GC--CCUAUCA-ACUUUCGAUGGUAGGAUAGUGGCCUACCAUGGUUUCAA d.16.e.N.crassa.fasta GC--CCUAUCA-ACUUUCGACGGCUGGGUCUUGGCCAGCCAUGGUGACAA d.16.e.P.anserina.fasta GC--CCUAUCA-ACUUUCGACGGCUGGGUCUUGGCCAGCCAUGGUGACAA d.16.e.C.immitis.fasta GC--CCUAUCA-ACUUUCGAUGGUAGGAUAGUGGCCUACCAUGGUGGCAA d.16.e.L.major.fasta GC--CCUAUCA-GCUGGUGAUGGCCGUGUAGUGGACUGCCAUGGCGUUGA d.16.e.T.cruzi.fasta GC--CCUAUCA-GCCAGCGAUGGCCGUGUAGUGGACUGCCAUGGCGUUGA d.16.e.T.brucei.fasta GC--CCUAUCA-GCCAGUGAUGGCCGUGUAGUGGACUGCCAUGGCGUUGA d.16.e.P.carinii.fasta GC--CCUAUCA-ACUUUCGAUGGUAGGAUAGAGGCCUACCAUGGUUUCGA d.16.e.C.neoformans.fasta GC--CCUAUCA-ACUUUCGAUGGUAGGAUAGAGGCCUACCAUGGUAUCAA d.16.e.Fungus.sp.QPX.fasta GC--CCUAUCA-ACUUUCGAUGGUAGAGUAGUGGUCUACCAUGGUAUCAA d.16.e.U.maydis.fasta GC--CCUAUCA-ACUGUCGAUGGUAGGAUAGAGGCCUACCAUGGUUGCAA d.16.e.M.leidyi.fasta GC--CCUAUCA-ACUUUCGAUGGUAAGGUAUUGGCUUACCAUGGUGACAA d.16.e.T.cystophora.fasta GC--CCUAUCA-ACUGUCGAUGGUAAGGUAGUGGCUUACCAUGGUUGCAA d.16.e.M.prolifera.fasta GC--CCUAUCA-ACUUUCGAUGGUACGGUAGUGGCCUACCAUGGUUGCAA d.16.e.P.haeckeli.fasta GC--CCUAUCA-ACUUUCGAUGGUAAGGUAUUGGCUUACCAUGGUUAUAA d.16.e.E.rotunda.fasta GC--CCUAUCA-GCUUUCGAUGGUAGUGUAAAGGACUACCAUGGCUAUAA d.16.e.P.chromatophora.fasta GC--CCUAUCA-GCUUUCGACGGUAGUGUAGAGGACUACCGUGGCGUUAA d.16.e.A.majus.fasta GC--CCUAUCA-ACUUUCGAUGGUAGGAUAGUGGCCUACUAUGGUGGUGA d.16.e.S.indicum.fasta GC--CCUAUCA-ACUUUCGAUGGUAGGAUAGUGGCCUACUAUGGUGGUGA d.16.e.D.grandiflora.fasta GC--CCUAUCA-ACUUUCGAUGGUAGGAUAGUGGCCUACUAUGGUGGUGA d.16.e.Pla.lanceolata.fasta GC--CCUAUCA-ACUUUCGAUGGUAGGAUAGUGGCCUACUAUGGUGGUGA d.16.e.N.tabacum.fasta GC--CCUAUCA-ACUUUCGAUGGUAGGAUAGUGGCCUACCAUGGUGGUGA d.16.e.A.thaliana.fasta GC--CCUAUCA-ACUUUCGAUGGUAGGAUAGUGGCCUACCAUGGUGGUAA d.16.e.S.alba.fasta GC--CCUAUCA-ACUUUCGAUGGUAGGAUAGUGGCCUACCAUGGUGGUAA d.16.e.S.tuberosum.fasta GC--CCUAUCA-ACUUUCGAUGGUAGGAUAGUGGCCUACCAUGGUGGUGA d.16.e.F.x.ananassa.fasta GC--CCUAUCA-ACUUUCGAUGGUAGGAUAGUGGCCUACCAUGGUGGUGA d.16.e.G.max.fasta GC--CCUAUCA-ACUUUCGAUGGUAGGAUAGUGGCCUACCAUGGUGGUGA d.16.e.O.sativa.fasta GC--CCUAUCA-ACUUUCGAUGGUAGGAUAGGGGCCUACCAUGGUGGUGA d.16.e.Z.mays.fasta GC--CCUAUCA-ACUUUCGAUGGUAGGAUAGGGGCCUACCAUGGUGGUGA d.16.e.A.verticilliflorum.fast GC--CCUAUNA-ACUUUCGAUGGUAAGAUAUUGGCCUACUAUGGUGUUGA d.16.e.G.spirotaenia.fasta GC--CCUAUCA-ACUUUCGAUGGUAGGAUAGAGGCCUACCAUGGUGGUUA d.16.e.Staurastrum.sp.M752.fas GC--CCUAUCA-ACUUUCGAUGGUAGGAUAGAGGCCUACCAUGGUGGUAA d.16.e.C.paradoxa.fasta GC--CCUAUCA-ACUUUCGAUGGUAGGAUAGAGGCCUACCAUGGUAGUAA d.16.e.G.nostochinearum.fasta GC--CCUAUCA-ACUUUCGAUGGUAGGAUAGAGGCCUACCAUGGUGUUAA d.16.e.G.wittrockiana.fasta GC--CCUAUCA-ACUUUCGAUGGUAGGAUAGGGGCCUACCAUGGUGGCAA d.16.e.C.luteoviridis.fasta GC--CCUAUCA-ACUUUCGAUGGUAGGAUAGAGGCCUACCAUGGUUUUGA d.16.e.O.longa.fasta GC--CCCAUCA-GCUUUCGAUGGUAGUGUAUUGGACUACCAUGGCUUUCA d.16.e.P.weissei.fasta GC--CCCAUCA-GCUUUCGAUGGUAGUGUAUUGGACUACCAUGGCUUUCA d.16.e.C.citrina.fasta GC--CCCAUCA-GCUUUCGAUGGUAGUGUAUUGGACUACCAUGGCUUUCA d.16.e.G.steinii.fasta GC--CCCAUCA-GCUUUCGAUGGUAGUGUAUUGGACUACCAUGGCUUUCA d.16.e.Ple.lanceolata.fasta GC--CCCAUCA-GCUUUCGAUGGUAGUGUAUUGGACUACCAUGGCUUUCA d.16.e.O.quadricornutus.fasta GC--CCCAUCA-GCUUUCGAUGGUAGUGUAUUGGACUACCAUGGCGUUCA d.16.e.S.lemnae.fasta GC--CCCAUCA-GCUUUCGAUGGUAGUGUAUUGGACUACCAUGGCUUUCA d.16.e.S.mytilus.fasta GC--CCCAUCA-GCUUUCGAUGGUAGUGUAUUGGACUACCAUGGCUUUCA d.16.e.E.mobilis.fasta GC--CCCAUCA-GCUUUCGAUGGUAGUGUAUUGGACUACCAUGGCUUUAA d.16.e.O.granulifera.1.fasta GC--CCCAUCA-GCUUUCGAUGGUAGUGUAUUGGACUACCAUGGCUUUAA d.16.e.O.granulifera.2.fasta GC--CCCAUCA-GCUUUCGAUGGUAGUGUAUUGGACUACCAUGGCUCUUA d.16.e.U.gallina.fasta GC--CCCAUCA-GCUUUCGAUGGUAGUGUAUUGGACUACCAUGGCUUUCA d.16.e.U.pisces.fasta GC--CCCAUCA-GCUUUCGAUGGUAGUGUAUUGGACUACCAUGGCUUUCA d.16.e.P.lepisma.fasta GC--CCCAUCA-GCUUUCGAUGGUAGUGUAUUGGACUACCAUGGCUUUCA d.16.e.U.grandis.fasta GC--CCCAUCA-GCUUUCGAUGGUAGUGUAUUGGACUACCAUGGCUUUAA d.16.e.B.coli.fasta GC--CCUAUCAUGCUUUCGAUGGUAGUGUAUUGGACUACCAUGGCUUUCA d.16.e.E.aediculatus.fasta GCUUCCCAUCA-GCUU--GAUGGUAGUGUAUUGGACAACCAUGGCAUUCA d.16.e.T.thermophila.fasta GC--CCUAUCA-GCUCUCGAUGGUAGUGUAUUGGACUACCAUGGCAGUCA d.16.e.Bangia.sp.NWT.fasta GC--CCUAUCA-ACUUUCGAUGGUAGAGUAUUGGUCUACCAUGGUGUCGA d.16.e.Bangia.sp.VIS7.fasta GC--CCUAUCA-GCUGUCGAUGGUAGGGUAUUGGCCUACCAUGGCGUUAA d.16.e.E.carnea.fasta GC--CCUAUCA-ACUUUCGAUGGUAGGGUAGUGGCCUACCAUGGUGUUAA d.16.e.R.parvula.fasta GC--CCUAUCA-ACUUUCGAUGGUAGGGUAGUGGCCUACCAUGGUGUUAA d.16.e.C.coeruleus.fasta GC--CCUAUCA-ACUUUCGAUGGUAGGGUAGUGGCCUACCAUGGUGGUAA d.16.e.P.aerugineum.1.fasta GC--CCUAUCA-ACUUUCGACGGUAGGGUAGUGGCCUACCGUGGUGUUUA d.16.e.R.maculata.fasta GC--CCUAUCA-ACUUUGGAUGGUAAGGUAGUGGCUUACCAUGGUGGUAA d.16.e.A.ambigua.fasta GC--CCUAUCA-GCUUCGGAUGGUAGGGUAUUGGCCUACCAUGGCAUUAA d.16.e.A.baicalensis.fasta GC--CCCAUCA-GCUUCGGAUGGUAGAGUAUUGGCCUACCAUGGCGUUAA d.16.e.S.nipponica.fasta GC--CCUAUCA-GCUUUGGAUGGUAGGGUAUUGGCCUACCAUGGCAUUAA d.16.e.C.radiatus.fasta GC--CCUAUCA-GCUUUGGAUGGUAGGGUAUUGGCCUACCAUGGCUUUAA d.16.e.C.criophilum.fasta GC--CCUAUCA-GCUUUGGAUGGUAGGGUAUUGGCCUACCAUGGCUUUAA d.16.e.A.capitellata.fasta GC--CCUAUCA-GCUUUGGACGGUAAGGUAUUGGCUUACCGUGGCUUUAA d.16.e.S.pupula.fasta GC--CCUAUCA-GCUUUGGAAGGUAGGUUCUUGGCCUACCUUGGCUUUAA d.16.e.T.antarctica.fasta GC--CCUAUCA-GCUUUGGAUGGUAGGGUAUUGGCCUACCAUGGCUUUAA d.16.e.E.triangulatum.fasta GC--CCUAUCA-GCUUUGGAUGGUAGGGUAUUGGCCUACCAUGGCUUUAA d.16.e.A.bongranii.fasta GC--CCUAUCA-GCUUUGGAUGGUAGGGUAUUGGCCUACCAUGGCUUUAA d.16.e.Pseudogomphonema.sp.fas GC--CCUAUCA-GCUUUGGAUGGUAGGGUAUUGGCCUACCAUGGCUUUAA d.16.e.D.tenue.fasta GC--CCUAUCA-GCUUUGGAUGGUAGGGUAUUGGCCUACCAUGGCUUUAA d.16.e.G.marina.fasta GC--CCUAUCA-GCUUUGAAUCGUAUGGUAUUGGCUUACGAUGGCUUUAA d.16.e.Thalassionema.sp.fasta GC--CCUAUCA-GCUUUGGAUGGUAGGGUAUUGGCCUACCAUGGCUUUAA d.16.e.R.belgicae.fasta GC--CCUAUCA-GCUUUGGAUGGUAGGGUAUUGGCCUACCAUGGCUUUAA d.16.e.Undatella.sp.fasta GC--CCUAUCA-GCUUUGGAUGGUAGGAUAUUUGCCUACCAUGGCUUUAA d.16.e.C.belgica.fasta GC--CCUAUCA-GCUUUGGAUGGUAGGGUAUUGGCCUACCAUGGCUUUAA d.16.e.O.sinensis.fasta GC--CCUAUCA-GCUUUGGAUGGUAGGGUAUUGGCCUACCAUGGCUUUAA d.16.e.D.brightwellii.fasta GC--CCUAUCA-GCUUUGGAUGGUAGGGUAUUGGCCUACCAUGGCUUUAA d.16.e.L.undulatum.fasta GC--CCUAUCA-GCUUUGGAUGGUAGGGUAUUGGCCUACCAUGGCUUUAA d.16.e.T.eccentrica.fasta GC--CCUAUCA-GCUUUGGAUGGUAGUGUAUUGGACUACCAUGGCUUUAA d.16.e.T.pseudonana.fasta GC--CCUAUCA-GCUUUGGAUGGUAGUGUAUUGGACUACCAUGGCUUUAA d.16.e.S.costatum.fasta GC--CCUAUCA-GCUUGGGAUGGUAGUGUAUUGGACUACCAUGGCUUUAA d.16.e.P.laevis.fasta GC--CCUAUCA-GCUUUGGAUGGUAGGGUAUUGGCCUACCAUGGCUUUAA d.16.e.L.borealis.fasta GC--CCUAUUA-ACUCCGGACGGUAUGGUAUUGGCUUACCGUGGUCGUAA d.16.e.P.pseudodenticulata.fas GC--CCUAUUA-ACUUCGGACGGUAUGGUAUUGGCUUACCGUGGUCAUAA d.16.e.B.mediterranea.fasta GC--CCUAUCA-GCUUUGGAUGGUAGGGUAUUGGCCUACCAUGGCUUUAA d.16.e.B.pacifica.fasta GC--CCUAUCA-GCUUUGGAUGGUAGGGUAUUGGCCUACCAUGGCUUUAA d.16.e.L.minuta.fasta 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GA--CCUAUCA-ACUUUCGAUGGUAAGGUAUUGUCUUACCAUGGUUGUGA d.16.e.B.gelatinosum.fasta GA--CCUAUCA-ACUUUCGAUGGUAAGGUAUUGUCUUACCAUGGUUGUGA d.16.e.N.tortuosa.fasta GA--CCUAUCA-ACUUUCGAUGGUAAGGUAUUGUCUUACCAUGGUUGUGA d.16.e.T.hispida.fasta GA--CCUAUCA-ACUUUCGAUGGUAAGGUAUUGUCUUACCAUGGUUGUGA d.16.e.T.violacea.4.fasta GA--CCUAUCA-ACUUUCGAUGGUAAGGUAUUGUCUUACCAUGGUUGUGA d.16.e.T.violacea.1.fasta GA--CCUAUCA-ACUUUCGAUGGUAAGGUAUUGUCUUACCAUGGUUGUGA d.16.e.T.violacea.2.fasta GA--CCUAUCA-ACUUUCGAUGGUAAGGUAUUGUCUUACCAUGGUUGUGA d.16.e.N.shawii.fasta GA--CCUAUCA-ACUUUCGAUGGUAAGGUAUUGUCUUACCAUGGUUGUGA d.16.e.B.investiens.fasta GA--CCUAUCA-ACUUUCGAUGGUAAGGUAUUGUCUUACCAUGGUUGUGA d.16.e.B.macrosporum.fasta GA--CCUAUCA-ACUUUCGAUGGUAAGGUAUUGUCUUAUCAUGGUUGUGA d.16.e.A.plicata.fasta GA--CCUAUCA-ACUUU-GACGUGAAGGUAUUGUCUUCACGUGGUUGUGA d.16.e.C.officinalis.fasta GA--CCUAUCA-ACUUUCGAUGGUAAGGUAGUGUCUUACCAUGGUGGCAA d.16.e.R.carriebowensis.fasta GA--CCUAUCA-ACUUUCGAUGGUAAGGUAGUGUCUUACCAUGGUGGUGA d.16.e.B.hamifera.fasta GA--CCUAUCA-ACUUUGGAUGGUAAGGUAUUGUCUUACCAUGGUUGUGA d.16.e.G.vagum.fasta GA--CCUAUCA-ACUUUGGAUGGUAAGGUAUUGUCUUACCAUGGUUGUGA d.16.e.C.crispus.fasta GA--CCUAUCA-ACUUUGGAUGGUAAGGUAUUGUCUUACCAUGGUUGUGA d.16.e.H.plana.fasta GA--CCUAUCA-ACUUUGGAUGGUAAGGUAGUGUCUUACCAUGGUUGUGA d.16.e.R.leptophylla.fasta GA--CCUAUCA-ACUUUGGAUGGUAAGGUAUUGUCUUACCAUGGUUUUGA d.16.e.P.pulvinata.fasta GA--CCUAUCA-ACUUUGGAUGGUAAGGUAUUGUCUUAUCAUGGUCGUGA d.16.e.C.rubrum.fasta GA--CCUAUCA-ACUUUGGAUGGUAAGGUAUUGUCUUACCAUGGUUUUGA d.16.e.Gracilariopsis.sp.fasta GA--CCUAUCA-ACUUUGGAUGGUAAGGUAAUGGCUUACCAUGGUUGUGA d.16.e.B.moritziana.fasta GA--CCUAUCA-ACUAUG-AUGGUAAGGUAGUGGCUUACCAUAGUUGUGA d.16.e.H.rubra.fasta GA--CCUAUCA-ACUUUGGAUGGUAAGGUAUUGUCUUACCAUGGUUGUGA d.16.e.D.grisea.fasta GC--CCUAUCA-ACUUUGGAUUGUAGGGUAGUGGCCUACAAUGGUGAUUA d.16.e.N.fowleri.fasta UA--CCUAUCA---GCUCGUUGCUUGUUUAAAGGACAAACAAGGCUUUGA d.16.e.N.gruberi.fasta UA--CCUAUCA---GCUCGUUGUUUGUUUAAAGGACAAACCAGGCUUUGA a.16.e.Hexamita.sp.fasta GA--CGCAUCA--U-UAAGUAGGAGAAGUAAAGGUUAUCCUAUGAGUUCA d.16.e.T.foetus.fasta GA--CCUAUCA--UGCUAGUACUUAGGGUCUUUACCUAGGUAGGCUAUCA d.16.e.A.khaliulini.fasta -A--CCUAUCA-GCUU--GACGGUACGGUAAGUGCGUACCGAGGCGAUAA d.16.e.E.aedis.fasta -A--CCUAUCA-GCUU--GACGGUACGGUAAGUGCGUACCGAGGCUAUAA d.16.e.A.connecticus.fasta -A--CCUAUCA-GCUU--GACGGUACGGUAAGUGCGUACCGUGGCUAUAA d.16.e.I.barri.fasta -A--CCUAUCA-GCUU--GACGGUACGGUAAGUGCGUACGGUGGCGAUGA d.16.e.A.ferocious.fasta -A--CCUAUCA-GCUUU-GUCGGUACGAUAAGUGCGUACCGUGGCUAUAA d.16.e.Amblyospora.sp.fasta -A--CCUAUCA-GCUA--GUCGGUACGGUAAAGGCGUACGGAGGCGAUGA d.16.e.C.lunata.fasta -A--CCUAUCA-GCUA--GUAGGUACGGUAAGAGCGUACCUAGGCUAUGA d.16.e.P.anophelis.fasta -A--CCUAUUA-GUUU--GUCGGUACGGUAAGUGCGUACGGAGACGAUGA d.16.e.Hazardia.sp.fasta -G--CCUAUCA-GCUA--GGCGGUACGGUAAGUGCGUACCGCGGCGACGA d.16.e.H.milleri.fasta -G--CCUAUCA-GCUA--GGCGGUACGGUAAGUGCGUACCGCGGCGACGA d.16.e.P.simulii.fasta -G--CCUAUCA-GCUAGUGAAGGUAGGGUAAGGGCCUACCUUGGCGAUGA d.16.e.W.palustris.fasta -G--CCUAUCA-GCUAGUGAAGGUAGGGUAAGGGCCUACCUUGGCGAUGA d.16.e.Nosema.sp.03.fasta -A--UCUAUCA-GUUA--GUUGUUAAGGUAAUGGCUUAACAAGACAAUGA d.16.e.Nosema.sp.05.fasta -A--UCUAUCA-GUUA--GUUGUUAAGGUAAUGGCUUAACAAGACUAUGA d.16.e.Endoreticulatus.sp.fast -A--UCUAUCA-GUUA--GUUGUUAAGGUAAUGGCUUAACAAGACUAUGA d.16.e.Nosema.sp.02.fasta -A--UCUAUCA-GUUA--GUUGUUAAGGUAAUGGCUUAACAAGACUAUGA d.16.e.N.spodopterae.fasta -A--UCUAUCA-GUUA--GUUGUUAAGGUAAUGGCUUAACAAGACUAUGA d.16.e.N.trichoplusiae.fasta -A--UCUAUCA-GUUA--GUUGUUAAGGUAAUGGCUUAACAAGACUAUGA d.16.e.N.bombycis.27.fasta -A--UCUAUCA-GUUA--GUUGUUAAGGUAAUGGCUUAACAAGACUAUGA d.16.e.N.bombycis.02.fasta -A--UCUAUCA-GUUA--GUUGUUAAGGUAAUGGCUUAACAAGACUAUGA d.16.e.V.imperfecta.fasta -A--UCUAUCA-GUUA--GUUGUUAAGGUAAUGGCUUAACAAGACUAUGA d.16.e.N.furnacalis.fasta -A--UCUAUCA-GUUA--GUUGUUAAGGUAAUGGCUUAACAAGACUAUGA d.16.e.Microsporidium57864.fas -A--CCUAUCA-GCUA--GUUGUUAAGGUAAUGGCUUAACAAGGCAGUGA d.16.e.Vairimorpha.sp.C21.fast -A--CCUAUCA-GCUA--GUUGUUAAGGUAAUGGCUUAACAAGGCAGUGA d.16.e.N.oulemae.fasta -A--CCUAUCA-GCUA--GUUGUUAAGGUAAUGGCUUAACAAGGCAGUGA d.16.e.N.necatrix.fasta -A--CCUAUCA-GCUA--GUUGUUAAGGUAAUGGCUUAACAAGGCAAUGA d.16.e.V.necatrix.fasta -A--CCUAUCA-GCUA--GUUGUUAAGGUAAUGGCUUAACAAGGCAAUGA d.16.e.N.apis.fasta -A--CCUAUCA-GCUA--GUUGUUAAGGUAAUGGCUUAACAAGGCAAUAA d.16.e.O.occidentalis.fasta -A--CCUAUCA-GCUA--GUUGUUAAGGUAAUGGCUUAACAAGGCAGUAA d.16.e.Microsporidium.sp.DP119 -A--UUUAUCA-GUUU--GUUGGUAGUGUAAUGGACUACCAAGACUAUGA d.16.e.V.corneae.fasta -G--ACUAUCA-GUUA--GUUGGUAGUGUAAUGGACUACCAAGACAGUGA d.16.e.A.michaelis.fasta -A--CCUAUCA-GUUA--GUAGGUAUGGUAAGGGCAUACCUAGACGAAGA d.16.e.T.contejeani.fasta -A--CCUAUCA-GCUA--GUAUGUAGGGUAAGGGCCUACGUAGGCGAUGA d.16.e.E.hellem.fasta GG--CCUAUCA-GCUG--GUAGUUAGGGUAAUGGCCUAACUAGGCGGAGA d.16.e.Encephalitozoon.sp.fast GG--CCUAUCA-GCUG--GUAGUUAGGGUAAUGGCCUAACUAGGCGGAGA d.16.e.E.cuniculi.fasta GG--CCUAUCA-GCUG--GUAGUUAGGGUAAUGGCCUAACUAGGCGCAGA d.16.e.O.colligata.fasta GA--CCUAUCA-GCUG--GUAGCUAGGGUAAUGGCCUAGGUAGGCGACGA d.16.e.E.salmonis.fasta -C--CCUAUCA-GUUU--GUUGGAAGUGUAAAAGACUCCCAAGACGUCGA d.16.e.N.salmonis.fasta -C--CCUAUCA-GUUU--GUUGGAAGUGUAAAAGACUCCCAAGACGUCGA d.16.e.Enterocytozoonidae.sp.f -G--CCUAUCA-GUUU--GUUGGUAGUGUAAUGGACUACCAAGACGAUGA d.16.e.E.bieneusi.fasta -C--CCUAUCA-GCUU--GUUGGUAGUGUAAAGGACUACCAAGGCCAUGA d.16.e.B.algerae.fasta GA--CCUAUCA-GUUA--GUAUGUUCUGUAAGGGAGAACAUAGACUAUGA d.16.e.T.solenopsae.fasta GA--CCUAUCA-GUUA--GUAUGUUUUGUAAGGGAGAACAUAGACUAUGA d.16.e.V.acridophagus.fasta GG--CCUAUUA-GUUA--GUAGGUAAUGUAAGGGAUUACCUAGACUAUUA d.16.e.Bacillidium.sp.fasta GA--CCUAUCA-GCUA--GAUGGUAAGGUAAAGGCUUACGAUUGCUAUAA d.16.e.P.cristatellae.fasta GG--CCUAUCA-GCUA--GAUGGUAAGGUAAUGGCUUACCAUGGCUAUAA d.16.e.Pleistophora.sp.fasta -G--ACUAUCA-GUUA--GUUGGUAGUGUAAUGGACUACCAAGACGGUGA d.16.e.O.operophterae.fasta -C--CCUAUCA-GCAA--GUUGGUAGUGUAACGGACUACCAAGGCGGCGA d.16.e.F.magnivora.fasta -A--CCCAUCA-GUUU--UAUCGUACGGUAAGGGCGUACGAUGGCUUUAA d.16.e.G.atherinae.fasta AU--CCCAUCA-GUUA--GUAAGUAGGGUAAGGGCCUACUUAGACGAAGA d.16.e.Ichthyosporidium.sp.fas AG--UCCAUCA-GUUA--GUAAGUAGGGUAAGGGCCUACUUAGACGAAUA d.16.e.L.acerinae.fasta AU--CCCAUCA-GUUA--GUAAGUAGGGUAAGGGCCUACUUAGACGAAGA d.16.e.H.anguillarum.fasta AU--CCCAUCA-GUUA--GUAAGUAGGGUAAGGGCCUACUUAGACGAAGA d.16.e.P.mirandellae.fasta AU--CCCAUCA-GUUA--GUAAGUAGGGUAAGGGCCUACUUAGACGAAGA d.16.e.T.hominis.fasta AU--CCCAUCA-GUUA--GUAAGUAGGGUAAGGGCCUACUUAGACGAAGA d.16.e.V.culicis.fasta AU--CCCAUCA-GUUA--GUAAGUAGGGUAAGGGCCUACUUAGACGAAGA d.16.e.P.hippoglossoideos.fast AU--CCCAUCA-GUUA--GUAAGUAGGGUAAGGGCCUACUUAGACGAGGA d.16.e.Microgemma.sp.fasta AU--CCCAUCA-AUUA--GUGAGUAGGGUAAGGGCCUAUUUAGACGAAGA d.16.e.S.lophii.fasta AU--CCCAUCA-GUUA--GUAAGUAGGGUAAGGGCCUAUUUAGACGUAGA d.16.e.Pleistophora.sp.LS.fast AG--GUCAUCA-GUUA--GUAGGUAGGGUAAGGGCCUACCUAGACGWAGA d.16.e.D.gammarellum.fasta AU--CCUAUCA-GUUA--GUAAGUAGGGUAAGGGCCUACUUAGACGAAGA d.16.e.M.prosopium.fasta AU--CCCAUCA-GUUA--GUAAGUAAGGUAAAGGCCUACUUAGACGAAGA d.16.e.A.scoticae.fasta GA--CCUAUCA-GCUA--GUAGGUAGGGUAAGGGCCUACCUAGGCGACGA d.16.e.P.whitei.fasta GG--CCCAUCA-GCUG--GUAGGUAGGGUAAGGGCCUACCUAGGCGACGA a.16.c.C.coccineum.fasta ---UCUCAUGGAGAGUUCG--AUCCUGGCU--CAGGAUGAACGCUGG-CG a.16.c.C.ruber.fasta ---UCUCAUGGAGAGUUCG--AUCCUGGCU--CAGGAUGAACGCUGG-UG d.16.c.N.tabacum.fasta ---UCUCAUGGAGAGUUCG--AUCCUGGCU--CAGGAUGAACGCUGG-CG d.16.c.S.oleracea.fasta ---UCUCAUGGAGAGUUCG--AUCCUGGCU--CAGGAUGAACGCUGG-CG d.16.c.Z.mays.fasta ----CUCAUGGAGAGUUCG--AUCCUGGCU--CAGGAUGAACGCUGG-CG d.16.c.M.polymorpha.fasta ---UCUCAUGGAGAGUUUG--AUCCUGGCU--CAGGAUGAACGCUGG-CG d.16.c.R.communis.fasta ---NNNNNNNNNNNNNNNN--NNNNNNNCU--CAGGAUGAACGCUGG-CG d.16.c.C.vulgaris.fasta --UGCCUGCAGAGAGUUYG--AUCCUGGCU--CAGGAUGAACGCUGG-CG d.16.c.P.wickerhamii.fasta UGUGAAAACGAAGAGUUUG--AUCCUGGCU--CAGGAUAAACGCUGG-CG d.16.c.P.minor.fasta ---AUUUUUGGAGAGUUUG--AUCCUGGCU--CAGGAUGAACGCUGG-CG d.16.c.N.olivacea.fasta ---UGCUAUGGAGAGUUUG--AUCCUGGCU--CAGGAUGAACGCUGG-CG d.16.c.P.parkeae.fasta ---NNNNNNNNNNNNNNNN--NNNNNNNNN--NNNNNNGAACGCUGG-CG d.16.c.C.reinhardtii.fasta ---AUCCAUGGAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG b.16.m.A.castellanii.fasta UAAACAAUCGUUGGGUUUU--AUUCUGGCU--CCGAGUGAACGCUGG-UA d.16.c.P.thurberi.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNNNNNNNNNNNNN-NN b.16.m.C.crispus.fasta -AUAUAAUAAAAGAGUUUG--AUCCUGGCU--CAGAAUGAACGCUAG-UG d.16.c.T.gondii.fasta --AAAUUAUUACGAGUUUG--AUCCUGGCU--CCGGAAGAACGCAAG-AG b.16.m.N.crassa.fasta AUAAAAAUAGAUGAGUUUG--GUGAUGGCU--CUGAUUGAACACUGU-UC b.16.m.P.anserina.fasta ACCAAAGU---UGAGUUUG--GUGAUGGCU--CUGAUUGAACACUGU-CC b.16.m.P.chrysogenum.fasta ---AAAAUAG-AGAGUUUG--AUGAUGGCU--CUAACUGAACACUGU-CC b.16.m.E.nidulans.fasta ---AAAAUUU-UGAGUUUG--AUGAUGGCU--CUGAUUGAACGCUGU-CC b.16.m.S.cerevisiae.fasta AAAAAUUUAUAAGAAUAUG--AUGUUGGUU--CAGAUUAAGCGCUAA-AU b.16.m.W.saturnus.m.fasta UAAAAUAUA-GAGAAUAUG--AUGUUAGUU--CAGACUUAAUACUAU-AU b.16.m.P.minor.fasta -------------------------------------------------- d.16.c.P.falciparum.fasta -------------------------------------------------- d.16.c.B.bovis.fasta ---NNNNNNNNNGAGUUUG--AUCCUGGCU--CAGAAUGAACGCUUA-AG b.16.m.T.pyriformis.fasta -AAAAAAAAUUAGGUUGUA--AUCAAA--A--AAUUUAUUGAGUGUG-AU d.16.m.S.sinuspaulianus.fasta UAAAAUUAUAUAAAUAAUA--ACUAAAUAA--AAAUGAUAAUAUGAA-AU b.16.m.P.tetraurelia.fasta AUUCUUUUUUAGGAGUGUG--AUCUUAGCU--UUGAUUUAACGCUAA-UC b.16.m.D.discoideum.fasta -AAGAAAAAAAUGAGUUUG--AUUCUGGCU--CCGAAUGAAUGCUAU-CA d.16.m.P.polycephalum.fasta UAAUAUAAUAAUGAGUUUG--AUCCUGGCU--CCGAGAGAAUGCUAG-CA b.16.m.P.littoralis.fasta --UAAUAAAAAUGAGUUUG--AUCCUGGCU--CAGAGUGAAGGCUAU-AA b.16.m.P.wickerhamii.fasta ---AAUUAUAUUGAGUUUG--AUCCUGGCU--CAGAAUGAACGCUAG-CC d.16.c.H.africana.fasta ---UCUCAUGGAGAGUUCG--AUCCUGGCU--CAGGAUGAACGCUGG-CG d.16.c.C.fragile.fasta -UUGAAAUGGAGAGGUUUG--AUCCUGGCU--CAGGAUGAACGCUGG-CG d.16.c.C.sertularioides.fasta --NNNNNNGGAGAG-UUUG--AUCCUGGCU--CAGGAUGAACGCUGG-CG d.16.c.C.humicola.fasta ---NNNNNNNNNNNNNNNN--NNNNNNGCU--CAGGAUGAACGCUGG-CG d.16.c.P.uvella.fasta ---ACUUCGAAAAGAGUUG--AUCCUGGCU--CAAGGUGAUCGCUGG-CU a.16.c.G.nostochinearum.fasta --GUGCUGCAGAGAGUUUG--AUCCUGGCU--CAGGAUGAACGCUGG-CG a.16.c.G.wittrockiana.fasta --GUGCUGCAGAGAGUUUG--AUCCUGGCU--CAGGAUGAACGCUGG-CG d.16.c.C.paradoxa.fasta --GUGCUGCAGAGAGUUUG--AUCCUGGCU--CAGGAUGAACGCUGG-CG d.16.y.C.paradoxa.fasta ---UACCAUGGAGAGUUUG--AUCCUGGCU--CAGGAUGAACGCUGG-CG d.16.c.Cryptomonas.sp.fasta --AAAUCAUGGAGAGUUUG--AUCCUGGCU--CAGGAUGAACGCUGG-CG d.16.c.P.palmata.fasta --ACACCAUGGAGAGUUUG--AUCCUGGCU--CAGGAUGAACGCUGG-CG d.16.c.H.akashiwo.fasta GGAUAUAAUUGAGAGUUUG--AUCCUGGCU--CAGGAUGAACGCUGG-CG d.16.c.S.pseudocostatum.fasta ---NNNNNUUUAAAGUUUG--AUCMUGGCU--CAGGAUGAACGCUGG-CG d.16.c.P.littoralis.fasta --AAACUAUCGAGAGUUUG--AUCCUGGCU--CAGGAUGAACGCUGG-CG d.16.c.C.caldarium.fasta ---UAUAAUGGAGAGUUUG--AUCCUGGCU--CAGGAUUAACGCUGG-CG a.16.c.E.huxleyi.fasta ----CAAGCUUAGAGUUUG--AUCCUGGCU--CAGGAUGAACGCUGG-CG d.16.c.E.gracilis.fasta --UGGAAAUGACGAGUUUG--AUCCUUGCU--CAGGGUGAACGCUGG-CG d.16.b.Anabaena.sp.fasta ----GAAACGGAGAGUUUG--AUCCUGGCU--CAGGAUGAACGCUGG-CG d.16.b.Chlorogloeopsis.PCC7518 ----NNNNNNNAGAGUUUG--AUCCUGGCU--CAGGAUGAACGCUGG-CG d.16.b.Synechococcus.sp.fasta ---CAAAAUGGAGAGUUUG--AUCCUGGCU--CAGGAUGAACGCUGG-CG d.16.b.Synechocystis.PCC6803.G ----ACAAUGGAGAGUUUG--AUCCUGGCU--CAGGAUGAACGCUGG-CG d.16.b.O.agardhii.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNGAUGAACGCUGG-CG d.16.b.Pleurocapsa.7516.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNGAUGAACGCUGG-CG d.16.b.M.aeruginosa.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNGAUGAACGCUGG-CG b.16.m.C.reinhardtii.fasta ----AAAUUA--GAGUUUG--GUGCUGGCU--CAGCUUUCAUGC-GC-CG d.16.m.C.eugametos.fasta UGAAAAAGUAAUGGGUUUG--AUAGUGGCU--CUGCAAGAACGC-UU-UA b.16.m.M.senile.fasta ---------------------------GUC--CUUUGAUUUUGG-GG-AA d.16.b.S.pneumoniae.fasta NNNNNNNNNNNNNNNNNNN--NNNNNNNNN--NNNNNNNNNNNN-NN-NN d.16.b.S.pyogenes.fasta NNNNNNNNNNNNNNNNNNN--NNNNNNNNN--NNNNNNNNNNNN-NN-NN d.16.b.B.anthracis.fasta ----NUAUUGGAGAGUUUG--AUCCUGGCU--CAGGAUGAACGCUGG-CG d.16.b.B.cereus.1.fasta ----UUAUUGGAGAGUUUG--AUCCUGGCU--CAGGAUGAACGCUGG-CG d.16.b.E.faecalis.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNNNCGAACGCUGG-CG d.16.b.E.faecium2.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNNACGAACGCUGG-CG d.16.b.L.monocytogenes.fasta ----UUUAAAGAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.B.subtilis.fasta ---UUUAUCGGAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.B.subtilis.GEN.fasta ---UUUAUCGGAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.B.halodurans.fasta ---NUUUAUGGAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.S.aureus.fasta ---UUUUAUGGAGAGUUUG--AUCCUGGCU--CAGGAUGAACGCUGG-CG d.16.b.S.aureus.GEN.fasta ---UUUUAUGGAGAGUUUG--AUCCUGGCU--CAGGAUGAACGCUGG-CG d.16.b.L.lactis.GEN.fasta ---UUUAUUUGAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.S.pyogenes.GEN.fasta --AAUUAAA-GAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.L.acidophilus.fasta ---NNAAAACGAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.M.capricolum.fasta ----NAAAAUGAGAGUUUG--AUCCUGGCU--CAGGAUAAACGCUGG-CG d.16.b.M.mycoides.fasta ---UUAAAAUGAGAGUUUG--AUCCUGGCU--CAGGAUNAACGCUGG-CG d.16.b.E.rhusiopathiae.fasta ----NAAAUGGAGAGUUUG--AUCCUGGCU--CAGGAUNAACGCUGG-CG d.16.b.C.innocuum.fasta ---CANNAUGGAGAGUUUG--AUCCUGGCU--CAGGAUGAACGCUGG-CG d.16.b.M.genitalium.fasta AAUUUUUUCUGAGAGUUUG--AUCCUGGCU--CAGGAUUAACGCUGG-CG d.16.b.M.pneumoniae.GEN.fasta ---NUUUUCUGAGAGUUUG--AUCCUGGCU--CAGGAUUAACGCUGG-CG d.16.b.M.pneumoniae.fasta ----UUUUCUGAGAGUUUG--AUCCUGGCU--CAGGAUUAACGCUGG-CG d.16.b.M.gallisepticum.fasta ----UUUUCUGAGAGUUUG--AUCCUGGCU--CAGGAUUAACGCUGG-CG d.16.b.U.urealyticum.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNNAUUAACGCUGG-CG d.16.b.U.urealyticum.GEN.fasta GUCAAUUUUAAAGAGUUUG--AUCCUGGCU--CAGGAUUAACGCUGG-CG d.16.b.M.hyopneumoniae.fasta -CGCAAUCAUGAGAGUUUG--AUCCUGGCU--CAGGAUAAACGCUAG-CU d.16.b.F.necrophorum.fasta ----NNNNNNNAAGGUUUG--AUCAUGGCU--CAG-AUGAACGCUGA-CA d.16.b.F.nucleatum.fasta --AUUGAACGAAGAGUUUG--AUCCUGGCU--CAGGAUGAACGCUGA-CA d.16.b.S.moniliformis.fasta ----NNNNNNNAGAGUUUG--AUCCUGGCU--CAGGAUGAACGCUGA-CA d.16.b.C.botulinum.F.fasta ----NNNNNNNNNNNNNNN--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.C.tetani.fasta ----NNNNNNGAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.C.perfringens.fasta ----NAAAUUGAGAGUUUG--AUCCUGGCU--CAGGAUGAACGCUGG-CG d.16.b.C.difficile.fasta ----NNNNNNGAGAGUUUG--AUCCUGGCU--CAGGAUGAACGCUGG-CG d.16.b.E.brachy.fasta UGCUGCAGAGAAGAGUUUG--AUCCUGGCU--CAGGAUGAACGCUGG-CG d.16.b.Epulopiscium.sp.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNGAUGAACGCUGG-CG d.16.b.H.chlorum.fasta ----NNNNNNNNNNNNNNG--AUCCUGGCU--CAGGACGAACGCUGG-CG b.16.m.G.max.fasta ACUCAAAAUAA-GAGUUUG--AUCCUGGCU--CAGAAGGAACGCUAG-CU b.16.m.O.berteriana.fasta AGUCAAAAGAA-GAGUUUG--AUCCUGGCU--CAGAAGGAACGCUAG-CU b.16.m.S.cereale.fasta AGUCAAAAUCU-GAGUUUG--AUCCUGGCU--CAGAAGGAACGCUAG-CU b.16.m.T.aestivum.fasta AGUCAAAAUCU-GAGUUUG--AUCCUGGCU--CAGAAGGAACGCUAG-CU d.16.m.Z.mays.fasta ----AAAAUCU-GAGUUUG--AUCCUGGCU--CAGAAGGAACGCUAG-CU b.16.m.M.polymorpha.fasta ACUCAAAAAAAAGAGUUUG--AUCCUGGCU--CAGAAUGAACGCUAG-CG b.16.m.N.olivacea.fasta ----AAACGUAAGAGUUUG--AUCCUGGCU--CAGAAUGAACGCUAG-CC d.16.b.G.liquefaciens.fasta ----NNNNNNNNGAGUUUG--AUCAUGGCU--CAGAGCGAACGCUGG-CG d.16.b.B.japonicum.fasta ---CCAACUUGAGAGUUUG--AUCCUGGCU--CAGAGCGAACGCUGG-CG d.16.b.R.acidophilus.fasta --UACAACUUGAGAGUUUG--AUCCUGGCU--CAGAACGAACGCUGG-CG d.16.b.A.caulinodans.fasta ----NNNNNNNNNNGUUUG--AUCCUGGCU--CAGAGCGAACGCUGG-CG d.16.b.B.quintana.fasta --UUCAAUAUGAGAGUUUG--AUCCUGGCU--CAGAACGAACGCUGG-CG d.16.b.M.loti.fasta --NNAAACUUGAGAGUUUG--AUCCUGGCU--CAGAACGAACGCUGG-CG d.16.b.A.tumefaciens.fasta --CUCAACUUGAGAGUUUG--AUCCUGGCU--CAGAACGAACGCUGG-CG d.16.b.B.bacilliformis.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNAACGAACGCUGG-CG d.16.b.B.henselae.fasta ----NNNNNNNNNNNNNNN--NNNNNNNCU--CAGAACGAACGCUGG-CG d.16.b.B.melitensis.fasta --NNNNNNNNNNNNNNNNN--NNNNNNNNN--NNNNNCGNACGCUGG-CG d.16.b.R.orientis.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNGACGAACGCUGG-CG d.16.b.Methylobacterium.sp.fas ----NNNNNNNNNNNNNUG--AUCCUGGCU--CAGAGCGAACGCUGG-CG d.16.b.R.bellii.fasta -NUCAAACUUGAGAGUUUG--AUCCUGGCU--CAGAACGAACGCUAU-CG d.16.b.R.felis.URRWXCal2.fasta AAUCAAACUUGAGAGUUUG--AUCCUGGCU--CAGAACGAACGCUAU-CG d.16.b.R.prowazekii.fasta -AUCAAACUUGAGAGUUUG--AUCCUGGCU--CAGAACGAACGCUAU-CG d.16.b.R.prowazekii.GEN.fasta -AUCAAACUUGAGAGUUUG--AUCCUGGCU--CAGAACGAACGCUAU-CG d.16.b.R.rickettsii.fasta ----NNNNNNNNNNNNNNN--NNCCUGGCU--CAAACGGAACGCUAU-CG d.16.b.A.calcoaceticus.fasta ---UUAACUGAAGAGUUUG--AUCAUGGCU--CAGAUUGAACGCUGG-CG d.16.b.P.pacificensis.fasta -----------AGAGUUUG--AUCAUGGCU--CAGAUUGAUCGCUGG-CG d.16.b.C.marismortui.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNAUUGAACGCUGG-CG d.16.b.H.halodenitrificans.fas ----NNNNNNNAGAGUUUG--AUCCUGGCU--CAGCUUNAACGCUGG-CG d.16.b.P.aeruginosa.fasta ----NUACUGAAGAGUUUG--AUCAUGGCU--CAGAUUGAACGCUGG-CG d.16.b.P.aeruginosa.GEN.fasta ----GAACUGAAGAGUUUG--AUCAUGGCU--CAGAUUGAACGCUGG-CG d.16.b.Pseudomonas.sp.fasta ----NNNNNNNNNNNNNNG--AUCAUGGCU--CAGAUUGAACGCUGG-CG d.16.b.P.putida.fasta ----NNNNNNNNNAGUUUG--AUCCUGGCU--CAGAUUGAACGCUGG-CG d.16.b.C.burnetii.fasta -----NAUUGAAGAGUUUG--AUUCUGGCU--CAGAUUGAACGCUAG-CG d.16.b.M.capsulatus.fasta ----NAACUGAAGAGUUUG--AUCAUGGCU--CAGAUUGAACGCUGG-CG d.16.b.L.pneumophila.1.fasta -----AACUGAAGAGUUUG--AUCCUGGCU--CAGAUUGAACGCUGG-CG d.16.b.L.pneumophila.2.fasta -----NNNNNNNNNNNNNN--NNNNNNNNN--NNGAUUGAACGCUGG-CG d.16.b.A.vinosum.fasta ----NNACUGAAGAGUUUG--AUCCUGGCU--CAGAUUGAACGCUGG-CG d.16.b.Beggiatoa.sp.fasta ----NNNNNNNNNNNUUUG--AUCNUGGCU--CAGAUUGAACGCUGG-CG d.16.b.A.hydrophila.fasta ----NNNNNNNNGAGUUUG--AUCAUGGCU--CAGAUUGAACGCUGG-CG d.16.b.S.putrefaciens.fasta ----NNNNNNNAGAGUUUG--AUNNUGGCU--CAGAUUGAACGCUGG-CG d.16.b.C.freundii.fasta ----NAAUUGAAGAGUUUG--AUCAUGGCU--CAGAUUGAACGCUGG-CG d.16.b.S.dysenteriae.1.fasta -----NAUUGAAGAGUUUG--AUCAUGGCU--CAGAUUGAACGCUGG-CG d.16.b.K.pneumoniae.fasta ----NAANUGAAGAGUUUG--AUCAUGGCU--CAGAUUGAACGCUGG-CG d.16.b.P.shigelloides.fasta ----NNAUUGAAGAGUUUG--AUCAUGGCU--CAGAUUGAACGCUGG-CG d.16.b.Y.pestis.fasta -----NNNNNNNNNNNNNN--NNNNNGGCU--CAGAUUGAACGCUGG-CG d.16.b.Y.pseudotuberculosis.fa ----NNNNNNNNNNNUUUG--AUCCUGGCU--CAGAUUGAACGCUGG-CG d.16.b.S.dysenteriae.2.fasta -----NNNNNNNNNNNNNN--NNNNUGGCU--CAGAUUGAACGCUGG-CG d.16.b.E.coli.0157G.GEN.fasta ----AAAUUGAAGAGUUUG--AUCAUGGCU--CAGAUUGAACGCUGG-CG d.16.b.E.coli.EDL.GEN.fasta ----AAAUUGAAGAGUUUG--AUCAUGGCU--CAGAUUGAACGCUGG-CG d.16.b.E.coli.fasta ----AAAUUGAAGAGUUUG--AUCAUGGCU--CAGAUUGAACGCUGG-CG d.16.b.E.coli.K12.GEN.fasta ----AAAUUGAAGAGUUUG--AUCAUGGCU--CAGAUUGAACGCUGG-CG h.16.b.E.coli.hlxnum.fasta ----AAAUUGAAGAGUUUG--AUCAUGGCU--CAGAUUGAACGCUGG-CG m.16.b.E.coli.mhg.fasta ----AAAUUGAAGAGUUUG--AUCAUGGCU--CAGAUUGAACGCUGG-CG s.16.b.E.coli.schem.fasta ----AAAUUGAAGAGUUUG--AUCAUGGCU--CAGAUUGAACGCUGG-CG d.16.b.S.typhimurium.fasta ----NAAUUGAAGAGUUUG--AUCAUGGCU--CAGAUUGAACGCUGG-CG d.16.b.S.marcescens.fasta ----NAAUUGAAGAGUUUG--AUCAUGGCU--CAGAUUGAACGCUGG-CG d.16.b.E.tarda.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNNNNNNNNNNNNN-NN d.16.b.P.vulgaris.fasta ----UAAUUGAAGAGUUUG--AUCAUGGCU--CAGAUUGAACGCUGG-CG d.16.b.V.cholerae4.fasta -----NAUUGAAGAGUUUG--AUCCUGGCU--CAGAUUGAACGCUGG-CG d.16.b.V.cholerae5.fasta -----NAUUGAAGAGUUUG--AUCCUGGCU--CAGAUUGAACGCUGG-CG d.16.b.V.cholerae2.fasta -----NAUUGAAGAGUUUG--AUCCUGGCU--CAGAUUGAACGCUGG-CG d.16.b.V.cholerae6.fasta -----NNNNNNNNNNUUUG--AUCCUGGCU--CAGAUUGAACGCUGG-CG d.16.b.V.cholerae.fasta -----NNNNNNAGAGUUUG--AUNNUGGCU--CAGAUUGAACGCUGG-CG d.16.b.V.cholerae.GEN.fasta ----NNAUUGAAGAGUUUG--AUCAUGGCU--CAGAUUGAACGCUGG-CG d.16.b.V.parahaemolyticus.fast ----AAAUUGAAGAGUUUG--AUCAUGGCU--CAGAUUGAACGCUGG-CG d.16.b.H.influenzae7.fasta -----NNNNNNNNNNNNNN--NNNNNNNNN--NNNNUUGAACGCUGG-CG d.16.b.H.influenzae8.fasta -----NNNNNNNNNNNNNN--NNNNNNNNN--NNNNUUGAACGCUGG-CG d.16.b.H.influenzae6.fasta -----NNNNNNNNNNNNNN--NNNNNNNNN--NNNNUUGAACGCUGG-CG d.16.b.H.influenz.fasta -----AAUUGAAGAGUUUG--AUCAUGGCU--CAGAUUGAACGCUGG-CG d.16.b.H.influenzae.fasta -----AAUUGAAGAGUUUG--AUCAUGGCU--CAGAUUGAACGCUGG-CG d.16.b.P.multocida.fasta ----NAAUUGAAGAGUUUG--AUCAUGGCU--CAGAUUGAACGCUGG-CG d.16.b.P.multocida.GEN.fasta ----GAAUUGAAGAGUUUG--AUCAUGGCU--CAGAUUGAACGCUGG-CG d.16.b.X.albilineans.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNAGUGAACGCUGG-CG d.16.b.X.campestris.fasta -----NNNNNNNNNNNNNN--NNNNNNNNN--NNNAGUGAACGCUGG-CG d.16.b.X.fastidiosa.GEN.fasta ----UAAGUGAAGAGUUUG--AUCCUGGCU--CAGAGUGAACGCUGG-CG d.16.b.D.nodosus.fasta ----NAACUGAAGAGUUUG--AUUCUGGCU--CAGAUUGAACGCUGG-CG d.16.b.F.tularensis.fasta ----NNNUUGAAGAGUUUG--AUCAUGGCU--CAGAUUGAACGCUGG-UG d.16.b.B.parapertussis.fasta ----NAACUGAAGAGUUUG--AUCCUGGCU--CAGAUUGAACGCUGG-CG d.16.b.B.pertussis.fasta ----NAACUGAAGAGUUUG--AUCCUGGCU--CAGAUUGAACGCUGG-CG d.16.b.B.bronchiseptica2.fasta ---UGAACUGAAGAGUUUG--AUCCUGGCU--CAGAUUGAACGCUGG-CG d.16.b.u.proteobacterium.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNNNNNNNNNNNNN-NN d.16.b.B.mallei.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNGAUUGAACGCUGG-CG d.16.b.Burkholderia.sp.fasta --GAUCCCGACAGAGUUUG--AUCCUGGCU--CAGAUUGAACGCUGG-CG d.16.b.N.meningitidis.MD58.GEN ---UGAACAUAAGAGUUUG--AUCCUGGCU--CAGAUUGAACGCUGG-CG d.16.b.N.meningitidis.Z2491.GE ---UGAACAUAAGAGUUUG--AUCCUGGCU--CAGAUUGAACGCUGG-CG d.16.b.N.gonorrhoeae.fasta ---UGAACAUAAGAGUUUG--AUCCUGGCU--CAGAUUGAACGCUGG-CG d.16.b.C.testosteroni.fasta ---CGAACUAUAGAGUUUG--AUCCUGGCU--CAGAUUGAACGCUGG-CG d.16.b.D.desulfuricans.fasta ---UGAACUGGAGAGUNUG--AUUCUGGCU--CAGAUUGAACGCUGG-CG d.16.b.M.xanthus.fasta ----CAAUUGGAGAGUUUG--AUCCUGGCU--CAGAACGAACGCUGG-CG d.16.b.D.thermophilus.fasta ----NNNNNNNAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.B.burgdorferi.fasta ----AUAACGAAGAGUUUG--AUCCUGGCU--UAGAACUAACGCUGG-CA d.16.b.B.burgdorferi.GEN.fasta --AAAUAACGAAGAGUUUG--AUCCUGGCU--UAGAACUAACGCUGG-CA d.16.b.B.hermsii.fasta ----NNNNNNNNNAGUUUG--AUCCUGGCU--UAGAACUAACGCUGU-CA d.16.b.S.aurantia.fasta AUAUAUGAUGGAGAGUUUG--AUCCUGGCU--CAGAACGAACGCUGG-CG d.16.b.T.pallidum.A.fasta ----AUGAUGGAGAGUUUG--AUCCUGGCU--CAGAACGAACGCUGG-CG d.16.b.L.illini.fasta AUUCAUAACGGAGAGUUUG--AUCCUGGCU--CAGAACUAACGCUGG-CG d.16.b.L.interrogans.fasta ----AACACGGAGAGUUUG--AUCCUGGCU--CAGAACUAACGCUGG-CG d.16.b.C.trachomatis.GEN.fasta ----NNNNCUGAGAAUUUG--AUCUUGGUU--CAGAUUGAACGCUGG-CG d.16.b.C.trachomatis.L2.fasta ----UUUUCUGAGAAUUUG--AUCUUGGUU--CAGAUUGAACGCUGG-CG d.16.b.C.muridarum.fasta ----NNNNCUGAGAAUUUG--AUCUUGGUU--CAGAUUGAACGCUGG-CG d.16.b.C.pneumoniae.AR39.fasta ----UUUUCUGAGAAUUUG--AUCUUAGUU--CAGAUUGAACGCUGG-CG d.16.b.C.pneumoniae.fasta ----UUUUCUGAGAAUUUG--AUCUUAGUU--CAGAUUGAACGCUGG-CG d.16.b.C.pneumoniae.J138.fasta ----UUUUCUGAGAAUUUG--AUCUUAGUU--CAGAUUGAACGCUGG-CG d.16.b.C.pneumoniae.CWL029.fas ----NNNNCUGAGAAUUUG--AUCUUAGUU--CAGAUUGAACGCUGG-CG d.16.b.C.psittaci.fasta ----UUUUCUGAGAAUUUG--AUCUUGGUU--CAGAUUGAACGCUGG-CG d.16.b.D.radiodurans.1.fasta ----UUUAUGGAGAGUUUG--AUCCUGGCU--CAGGGUGAACGCUGG-CG d.16.b.D.radiodurans.GEN.fasta ----UUUAUGGAGAGUUUG--AUCCUGGCU--CAGGGUGAACGCUGG-CG d.16.b.B.fragilis.fasta UUUUACAAUGAAGAGUUUG--AUCCUGGCU--CAGGAUGAACGCUAG-CU d.16.b.P.gingivalis.fasta ----ACAGUGGAGAGUUUG--AUCCUGGCU--CAGGAUNAACGCUAG-CG d.16.b.C.vibrioforme.fasta UUUUACAACGGAGAGUNUG--AUCCUGGCU--CAGGACNAACGCUGG-CG d.16.b.C.jejuni.fasta --UUUUUAUGGAGAGUUUG--AUCCUGGCU--CAGAGUGAACGCUGG-CG d.16.b.C.jejuni.GEN.fasta --UUUUUAUGGAGAGUUUG--AUCCUGGCU--CAGAGUGAACGCUGG-CG d.16.b.C.sputorum.fasta AGUUUAAUUGGGAAAUGUA--GCUCUUAAU--AAUAUAUAUCAAAGA-UA d.16.b.H.pylori.26695.GEN.fast --NNUUUAUGGAGAGUUUG--AUCCUGGCU--CAGAGUGAACGCUGG-CG d.16.b.H.pylori.J99.GEN.fasta --NNUUUAUGGAGAGUUUG--AUCCUGGCU--CAGAGUGAACGCUGG-CG d.16.b.H.pylori2.fasta ----UUUAUGGAGAGUUUG--AUCCUGGCU--CAGAGUGAACGCUGG-CG d.16.b.A.capsulatum.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNAAUCAACGCUGG-CG d.16.b.H.foetida.fasta ----NNNNNNNNGAGUUUG--AUCCUGGCU--CAGAAUGAACNCUGG-CG d.16.b.A.globiformis.fasta --UUUCAACGGAGAGUUUG--AUCCUGGCU--CAGGAUGAACGCUGG-CG d.16.b.M.luteus.fasta -UUUUUUACGGAGAGUUUG--AUCCUGGCU--CAGGAUNAACGCUGG-CG d.16.b.Frankia.sp.fasta ----UUGAUGGAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.S.bottropensis.fasta --CAUUCACGGAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.S.scabiei.fasta --CAUUCACGGAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.S.neyagawaensis.fasta --CAUUCACGGAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.S.diastatochromogenes.f --CAUUCACGGAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.Streptomyces.sp.fasta --CAUUCACGGAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.S.acidiscabies.fasta --CAUUCACGGAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.S.griseus.fasta --CAUUCACGGAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.S.ornatus.fasta ----NNNNNNNAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.S.subrutilus.fasta ----NNNNNNNAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.S.bikiniensis.fasta ----NNNNNNNAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.S.galbus.fasta ----NNNNNNNAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.S.hygroscopicus.fasta ----NNNNNNNAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.S.lincolnensis.fasta ----NNNNNNNAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.S.coelicolor.fasta --CAUUCACGGAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.S.tendae.fasta --CAUUCACGGAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.S.ambofaciens.fasta ----NUCACGGAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.S.eurythermus.fasta --CAUUCACGGAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.S.nodosus.fasta ----UUCACGGAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.S.sampsonii.fasta --CAUUCACGGAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.S.glaucescens.fasta ----NNNNNNNAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.S.pseudogriseolus.fasta ----NNNNNNNAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.S.caelestis.fasta ----NNNNNNNAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.S.bluensis.fasta ----NNNNNNNAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.S.espinosus.fasta ----NNNNNNNAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.S.mashuensis.fasta ----NNNNNNNAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.S.rimosus.fasta ----NUCACGGAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.S.limosus.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNNNNNAACGCUGG-CG d.16.b.S.odorifer.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNNNNNAACGCUGG-CG d.16.b.S.felleus.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNNNNNAACGCUGG-CG d.16.b.S.albidoflavus.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNNNNNAACGCUGG-CG d.16.b.S.gougerotii.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNNNNNAACGCUGG-CG d.16.b.S.rutgersensis.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNNNNNAACGCUGG-CG d.16.b.S.intermedius.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNNNNNAACGCUGG-CG d.16.b.S.thermodiastaticus.fas ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNGACGAACGCUGG-CG d.16.b.S.thermoviolaceus.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNGACGAACGCUGG-CG d.16.b.S.thermovulgaris.1.fast ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNGACGAACGCUGG-CG d.16.b.S.thermovulgaris.2.fast ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNGACGAACGCUGG-CG d.16.b.S.macrosporus.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNGACGAACGCUGG-CG d.16.b.S.megasporus.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNGACGAACGCUGG-CG d.16.b.S.thermolineatus.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNGACGAACGCUGG-CG d.16.b.M.tuberculosis.2.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNNNNNNNNNNNGG-CG d.16.b.M.tuberculosis.3.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNNNNNNNNNNNGG-CG d.16.b.M.avium.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNNNNNNNNNNNGG-CG d.16.b.M.leprae.fasta ---UUGUUUGGAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.M.leprae.GEN.fasta -NUUUGUUUGGAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.M.tuberculosis.CDC1551. -NUUUGUUUGGAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.M.tuberculosis.GEN.fast -UUUUGUUUGGAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.N.asteroides.fasta ----NNNNNNNNNNNNNNN--NNNNNNGCU--CAGGACGAACGCUGG-CG d.16.b.R.erythropolis.fasta ----UCAACGGAGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.C.diphtheriae.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNU--CAGGACGGACGCUGG-CG d.16.b.A.israelii.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNNNNNNNNNNNNN-NN d.16.b.B.hyodysenteriae.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNNNNNNNCGUUGG-CG d.16.b.G.subterranea.fasta ----UGGAAGAAGGGUUUG--AUCCUGGCU--CAGGGUGAACGCUGG-CG d.16.b.P.miotherma.fasta ----AGGAUNNAGGGUUUN--AUCCUNGCU--CAGGGUAAACGCUNG-CG d.16.b.B.andersonii.fasta --UAAUAAUGGAGGGUUUG--AUUCUGGCU--CAGAGCGAACGCUGG-CA d.16.b.H.aurantiacus.fasta ---NUUGUCGGCGAGUUUG--AUCCUGGCU--CAGGACGAACGCUGG-CG d.16.b.Leptospirillium.sp.fast ---AAAUCUGGAGAGUUUG--AUCCUGGCU--CAGAACGAACGCUGG-CG d.16.b.A.aeolicus.fasta --UUUCCCUGAAGAGUUUG--AUCCUGGCU--CAGCGCGAACGCUGG-CG d.16.b.A.pyrophilus.fasta ---UUCCCUGAAGAGUUUG--AUCCUGGCU--CAGCGCGAACGCUGG-CG d.16.b.T.maritima.fasta ----UAUAUGGAGGGUUUG--AUCCUGGCU--CAGGGUGAACGCUGG-CG d.16.b.T.maritima.GEN.fasta ----UAUAUGGAGGGUUUG--AUCCUGGCU--CAGGGUGAACGCUGG-CG n.16.b.T.thermophilus.2.num.fa ---NUUGUUGGAGAGUUUG--AUCCUGGCU--CAGGGUGAACGCUGG-CG s.16.b.T.thermophilus.2.schem. ---NUUGUUGGAGAGUUUG--AUCCUGGCU--CAGGGUGAACGCUGG-CG d.16.b.T.thermophilus.2.fasta ---NUUGUUGGAGAGUUUG--AUCCUGGCU--CAGGGUGAACGCUGG-CG s.16.b.T.thermophilus.1.schem. ---UUUGUUGGAGAGUUUG--AUCCUGGCU--CAGGGUGAACGCUGG-CG n.16.b.T.thermophilus.1.num.fa ---UUUGUUGGAGAGUUUG--AUCCUGGCU--CAGGGUGAACGCUGG-CG d.16.b.T.thermophilus.1.fasta ---NUUGUUGGAGAGUUUG--AUCCUGGCU--CAGGGUGAACGCUGG-CG d.16.b.T.aquaticus.fasta ----NNNNNNNNNNNNNNN--NNNNNNGCU--CAGGGUGAACGCUGG-CG d.16.b.T.roseum.fasta ---GGGGAUGGAGAGUUUG--AUCCUGGCU--CAGGGGGAACGCUGG-CG d.16.b.P.marina.fasta ----CAAUUGAAGGGUUUG--AUUCUGGCU--CAGAAUGAACGUUGG-CG d.16.b.P.staleyi.fasta ----CAAUUGAAGAGUUUG--AUCCUGGCU--CAGAAUGAACGUUGG-CG d.16.b.P.Schlesner.fasta ----NNNNNNNNNNNNNNN--NNCCUGGCU--CAGAAUGAACGUUGG-CG d.16.b.G.obscuriglobus.1.fasta ----NNNNNNNNNNNNNNN--NNNNNNNNN--NNNAACGAACGUUGG-CG d.16.b.I.pallida.fasta ----NNUCCGAAGGGUUUG--AUCCUGGCU--CAGAAUGAACGUUGG-CG d.16.a.P.abyssi.fasta ACUCCCUUAAUUCCGGUUG--AUCCUG-CC--GGAGGCCACUGCUAU-GG d.16.a.P.horikoshii.fasta ---------AUUCCGGUUG--AUCCUG-CC--GGAGGCCACUGCUAU-GG d.16.a.P.furiosus.fasta ---------AUUCCGGUUG--AUCCUG-CC--GGAGGCCACUGCUAU-GG d.16.a.T.celer.fasta ---------AUUCCGGUUG--AUCCUG-CC--GGAGGCCACUGCUAU-GG d.16.a.A.fulgidus.fasta ---------AUUCUGGUUG--AUCCUG-CC--AGAGGCCGCUGCUAU-CC d.16.a.N.equitans.fasta ---------ACUCCCGUUG--AUCCUG-CG--GGAGGCCACCGCUAU-CU d.16.a.A.pernix.K1.fasta ---------ACUCCGGUUG--AUCCUG-CC--GGACCCGACCGCUAU-CG d.16.a.P.occultum.fasta ---------ACUCCGGUUG--AUCCUG-CC--GGGCCCGACCGCUAU-CG d.16.a.T.tenax.fasta ---------AAACCGGUUG--AUCCUG-CC--GGACCUGACCGCUAU-CG d.16.a.S.acidocaldarius.fasta ---------AUUCCGGUUG--AUCCUG-CC--GGACCCGACCGCUAU-CG d.16.a.S.solfataricus.fasta ---------AUUCCGGUUG--AUCCUG-CC--GGACCCGACCGCUAU-CG d.16.a.S.solfataricus.2.fasta --------AAAUCCGGUUG--AUCCUG-CC--GGACCCGACCGCUAU-CG d.16.a.M.thermautotrophicus.1. ---------NGUCCGUUUG--AUCCUG-GC--GGAGGCUACUGCUAU-UG d.16.a.M.thermautotrophicus.2. ---------NUUCCGUUUG--AUCCUG-GC--GGAGGCUACUGCUAU-UG d.16.a.M.formicicum.fasta ---------AGUCCGUUUG--AUCCUG-GC--GGAGGCCACUGCUAU-UG d.16.a.M.vannielii.fasta ---------AUUCCGGUUG--AUCCCG-CC--GGAGGCUACUGCUAU-UG d.16.a.H.marismortui.rrnA.fast ---------AUUCCGGUUG--AUCCUG-CC--GGAGGCCAUUGCUAU-CG d.16.a.H.marismortui.rrnB.fast ---------AUUCCGGUUG--AUCCUG-CC--GGAGGCCAUUGCUAU-CG d.16.a.Halobacterium.sp.fasta ---------AUUCCGGUUG--AUCCUG-CC--GGAGGCCAUUGCUAU-CG d.16.a.N.bangense.fasta ---------AUUCCGGUUG--AUCCUG-CC--GGAGGUCAUUGCUAU-UG d.16.a.N.innermongoliae.fasta ---------AUUCCGGUUG--AUCCUG-CC--GGAGGUCAUUGCUAU-UG d.16.a.H.volcanii.fasta ---------AUUCCGGUUG--AUCCUG-CC--GGAGGUCAUUGCUAU-UG d.16.a.M.hungatei.fasta ---------AUUCUGNUUG--AUCCUG-CC--AGAGGCCACUGCUAU-CG d.16.a.P.torridus.fasta ---------ACUCCGGUUG--AUCCUG-CC--GGCGGCCACUGCUAU-CA d.16.a.T.acidophilum.fasta ---------ACUCCGGUCG--AUCCUG-CC--GGCGGUCACUGCUAU-CA a.16.e.G.ardeae.fasta CGCCUG-GCGGAGGAUCAG--GGUUCGACU-CCGGAGAGCGGGCCUG-AG d.16.e.G.intestinalis.fasta CGCCUG-GCGGAGAAUCAG--GGUUCGACU-CCGGAGAGCGGGCCUG-CG a.16.e.G.muris.fasta UGCCUG-GCGGAGGAUCAG--GGUUUGACU-CCGGAGAACGGGCCUG-AG d.16.e.A.bracteata.fasta UGGGUG-ACGGGGAAUCGG--GGUUUGAUU-CCGGAGAAGGAGGCUG-AG d.16.e.Glomus.sp.W3349.fasta CGGGUA-ACGGGGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.S.cerradensis.fasta CGGGUA-ACGGGGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG a.16.e.G.intraradices.fasta CGGGUA-ACGGGGUGUUAG--GGCACGACA-CCGGAGAGGGAGCCUG-AG d.16.e.S.culisetae.fasta CGGGUA-ACGGGGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG a.16.e.P.balamuthi.fasta CGGGUA-ACGGGGAAUCAG--GGCUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.A.flavus.fasta CGGGUA-ACGGGGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.T.caries.fasta CGGGUA-ACGGGGAAUAAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.M.circinelloides.fasta CGGGUA-ACGGGGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.M.racemosus.fasta CGGGUA-ACGGGGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.R.oryzae.fasta CGGGUA-ACGGGGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG a.16.e.M.edulis.fasta CGGG-UAACGGGGAAUCAG--GGUUCGAUU-CCGGAGAGGGAGCAUG-AG a.16.e.P.magellanicus.fasta CGGG-UAACGGAGAAUCAG--GGUUCGGUU-CCGGAGAGGGAGCAUG-AG b.16.e.E.granulosus.fasta CGGGGUAACGGGGAAUCAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.D.melanogaster.fasta CGGG-UAACGGGGAAUCAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG b.16.e.C.koreana.fasta CGGG-UAACGGGGAAUCAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG b.16.e.A.australis.fasta CGGG-UAACGGGGAAUCAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG b.16.e.O.utahensis.fasta CGGG-UAACGGGGAAUCAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG b.16.e.A.salina.fasta CGGG-UAACGGGGAAUCGG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.M.musculus.fasta CGGG-UGACGGGGAAUCAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.R.norvegicus.fasta CGGG-UGACGGGGAAUCAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.H.sapiens.fasta CGGG-UGACGGGGAAUCAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.O.cuniculus.fasta CGGG-UGACGGGGAAUCAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.X.borealis.fasta CGGG-UAACGGGGAAUCAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.X.laevis.fasta CGGG-UAACGGGGAAUCAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.A.castellanii.fasta CGGGUA-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.B.mandrillaris.fasta CGGGUA-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.P.falciparum.A.fasta CGGGUA-ACGGGGAAUUAG--AGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.P.falciparum.S.fasta CGGGUA-ACGGGGAAUUAG--AGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.P.vivax.A.fasta CGGGUA-ACGGGGAAUUAG--AGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.P.vivax.O.fasta CGGGCA-ACGGGGAAUUAU--AGUUCGAUU-CCCGAGAGGGAGCUUG-AG d.16.e.P.vivax.S.fasta CGGGUA-ACGGGGAAUUAG--AGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.E.histolytica.fasta CGGAUA-ACGAGGAAUUGG--GGUUCGACA-UCGGAGAGGGAGCUUU-AC d.16.e.I.hoferi.fasta CGGGUA-ACGGAGAAUUAG--GGUUCGAUU-CCCGAGAGGGAGCCUG-AG d.16.e.Dermocystidium.sp.fasta CGGGUA-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.S.destruens.fasta CGGGUA-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.A.unguiculata.fasta CGGGUA-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGARCCUG-AG d.16.e.D.grandis.fasta CGGGUA-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.A.macrogynus.fasta CGGGUA-ACGGGGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.B.emersonii.fasta CGGGUA-ACGGGGAAUAAG--GGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.C.albicans.fasta CGGGUA-ACGGGGAAUAAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.S.cerevisiae.fasta CGGGUA-ACGGGGAAUAAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.N.crassa.fasta CGGGUA-ACGGAGGGUUAG--GGCUCGACC-CCGGAGAAGGAGCCUG-AG d.16.e.P.anserina.fasta CGGGUA-ACGGGGAGUUAG--GGCUCGACU-CCGGAGAAGGAGCCUG-AG d.16.e.C.immitis.fasta CGGGUA-ACGGGGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.L.major.fasta CGGG-A-GCGGGGGAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.T.cruzi.fasta CGGG-A-GCGGGGGAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.T.brucei.fasta CGGG-A-GCGGGGGAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.P.carinii.fasta CGGGUA-ACGGGGAAUAAG--GGUUCUAUU-CCGGAGAGGGAGCCUG-AG d.16.e.C.neoformans.fasta CGGGUA-ACGGGGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.Fungus.sp.QPX.fasta CGGGUA-ACGGGGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.U.maydis.fasta CGGGUA-ACGGGGAAUAAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.M.leidyi.fasta CGGGUA-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCCG-AG d.16.e.T.cystophora.fasta CGGGUA-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.M.prolifera.fasta CGGGUG-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.P.haeckeli.fasta CGGGUG-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGUGGGAGCCUG-AG d.16.e.E.rotunda.fasta CGGGUA-ACGGGGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.P.chromatophora.fasta CGGGUGCACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.A.majus.fasta CGGGUG-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.S.indicum.fasta CGGGUG-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.D.grandiflora.fasta CGGGUG-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.Pla.lanceolata.fasta CGGGUG-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.N.tabacum.fasta CGGGUG-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.A.thaliana.fasta CGGGUG-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.S.alba.fasta CGGGUG-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.S.tuberosum.fasta CGGGUG-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.F.x.ananassa.fasta CGGGUG-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.G.max.fasta CGGGUG-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.O.sativa.fasta CGGGUG-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.Z.mays.fasta CGGGUG-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.A.verticilliflorum.fast CGGGUG-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.G.spirotaenia.fasta CGGGUG-ACGGGGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.Staurastrum.sp.M752.fas CGGGUA-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.C.paradoxa.fasta CGGGUA-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGCGCCUG-AG d.16.e.G.nostochinearum.fasta CGGGUA-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGCGCCUG-AG d.16.e.G.wittrockiana.fasta CGGGUA-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGCGCCUG-AG d.16.e.C.luteoviridis.fasta CGGGUG-ACGGAGGAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.O.longa.fasta CGGG-UAACGGAGGAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.P.weissei.fasta CGGG-UAACGGAGGAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.C.citrina.fasta CGGG-UAACGGAGGAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.G.steinii.fasta CGGG-UAACGGAGGAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.Ple.lanceolata.fasta CGGG-UAACGGAGGAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.O.quadricornutus.fasta CGGG-UAACGGAGGAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.S.lemnae.fasta CGGG-UAACGGAGGAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.S.mytilus.fasta CGGG-UAACGGAGGAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.E.mobilis.fasta CGGG-UAACGGAGGAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.O.granulifera.1.fasta CGGG-UAACGGAGGAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.O.granulifera.2.fasta CGGG-UAACGGAGGAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.U.gallina.fasta CGGG-UAACGGAGGAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.U.pisces.fasta CGGG-UAACGGAGGAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.P.lepisma.fasta CGGG-UAACGGAGGAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.U.grandis.fasta CGGG-UGACGGAGGAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.B.coli.fasta CGGG-UAACGGGGAAUUAG--GGUUCGAUU-CCGGAGAAGGAGCCUG-AG d.16.e.E.aediculatus.fasta CGGGCUAUCGGGGGAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AU d.16.e.T.thermophila.fasta CGGG-UAACGGAGAAUUAG--GGUUCGAUU-CCGGAGAAGGAGCCUG-AG d.16.e.Bangia.sp.NWT.fasta CGGGUG-ACGGGGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.Bangia.sp.VIS7.fasta CGGGUG-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.E.carnea.fasta CGGGUG-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.R.parvula.fasta CGGGUG-ACG-AGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.C.coeruleus.fasta CGGGUG-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.P.aerugineum.1.fasta CGGGUA-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.R.maculata.fasta CGGGUA-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.A.ambigua.fasta CGGGUA-ACGGGAGAUCAG--GGUUUGACU-CCGGAGAGGGAGCCUG-AG d.16.e.A.baicalensis.fasta CGGGUA-ACGGGAGAUCAG--GGUUUGACU-CCGGAGAGGGAGCCUG-AG d.16.e.S.nipponica.fasta CGGGUA-ACGGGAGAUCAG--GGUUUGACU-CCGGAGAGGGAGCCUG-AG d.16.e.C.radiatus.fasta CGGGUG-ACGGAUGGUUAG--GGCUGGACC-CCGGAGAGSGAGCCUG-AG d.16.e.C.criophilum.fasta CGGGUA-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.A.capitellata.fasta CGGGUA-ACGGGGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.S.pupula.fasta CGGGUA-ACGGAUAAUUAG--GGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.T.antarctica.fasta CGGGUA-ACGGGAAAUCAG--GGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.E.triangulatum.fasta CGGGUA-ACGGAGGAUUAG--GGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.A.bongranii.fasta CGGGUA-ACGGGAAAUUAG--GGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.Pseudogomphonema.sp.fas CGGGUA-ACGGGAAAUUAG--GGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.D.tenue.fasta CGGGUA-ACGGGAAAUUAG--GGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.G.marina.fasta CGGGUA-ACGGGAAAUUAG--GGUUUGAUU-CCGGAGAGGGAGCAUG-AG d.16.e.Thalassionema.sp.fasta CGGGUA-ACGGGAAAUUAG--GGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.R.belgicae.fasta CGGGCA-ACGGAGGAUUAG--GGUUCGGUU-CCGGAGAGGGAGCCUG-AG d.16.e.Undatella.sp.fasta CGGGUA-ACGGGAAAUUAG--GGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.C.belgica.fasta CGGGUA-ACGGGAAAUUAG--GGUUUGACU-CCGGAGAGGGGGCCUG-AG d.16.e.O.sinensis.fasta CGGGUA-ACGGAUAAUUAG--GGUUAGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.D.brightwellii.fasta CGGGUA-ACGGGUUGUUAG--GGCAAGACU-CCGGAGAGGGAGCCUG-AG d.16.e.L.undulatum.fasta CGGGUA-ACGGGUUGUUAG--GGCAAGACU-CCGGAGAGGGAGCCUG-AG d.16.e.T.eccentrica.fasta CGGGUA-ACGAAUUGUUAG--GGCAAGAUU-UCGGAGAGGGAGCCUG-AG d.16.e.T.pseudonana.fasta CGGGUA-ACGAAUUGUUAG--GGCAAGAUU-UCGGAGAGGGAGCCUG-AG d.16.e.S.costatum.fasta CGGGUA-ACGAAUUGUUAG--GGCAAGAUU-UCGGAGAGGGAGCCUG-AG d.16.e.P.laevis.fasta CGGGUA-ACGGAUAAUUAG--GGUUAGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.L.borealis.fasta UGGGUA-ACGAAAAGUUAG--GGCUUGAUU-UCGGAGAGGGAGCCUG-AG d.16.e.P.pseudodenticulata.fas UGGGUA-ACGAAUAGUUAG--GGCUAGAUU-UCGGAGAGGGAGCCUG-AG d.16.e.B.mediterranea.fasta CGGGUA-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.B.pacifica.fasta CGGGUA-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.L.minuta.fasta CGGGUG-ACGGAGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.L.danicus.fasta CGGGUA-ACGGAGGAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.Chaetoceros.sp.fasta CGGGUA-ACGGAGGAUUAG--GGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.A.invadans.fasta CGGGUA-ACGGGGAAUUAG--GGUUUGAUU-CCGGAGAGGGAGCCUU-AG d.16.e.L.giganteum.fasta CGGGUA-ACGGGGAAUUAG--GGUUUGAUU-CCGGAGAGGGAGCCUU-AG d.16.e.M.varians.fasta CGGGUA-ACGGGAGAUUAG--GGUUUGACU-CCGGAGAGGGAGCCUG-AG d.16.e.B.hominis.fasta CGGGUA-ACGAAGAAUUUG--GGUUCGAUU-UCGGAGAGGGAGCCUG-AG d.16.e.P.marinus.fasta CGGGUA-ACGGGGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.T.gondii.fasta CGGGUA-ACGGGGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.A.fundyense.fasta CAGGUG-ACGGAGGAUUAG--GGUUUGAUU-CCGGAGAGGGAGCUUG-AG d.16.e.B.bigemina.fasta CGGGUA-ACGGGGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.B.canis.fasta CGGGUA-ACGGGGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.Babesia.sp.OKD.fasta CGGGUA-ACGGGGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.B.microti.1.fasta CGGGUG-ACGGGGAAUUGG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.B.microti.2.fasta CGGGUG-ACGGGGAAUUGG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.B.microti.3.fasta CGGGUG-ACGGGGAAUUGG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.B.microti.4.fasta CGGGUG-ACGGGGAAUUGG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.B.microti.5.fasta CGGGUG-ACGGGGAAUUGG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.B.rodhaini.fasta CGGGUA-ACGGGGAAUUGG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.B.gibsoni.fasta CGGGUA-ACGGGGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.B.bovis.fasta CGGGUA-ACGGGGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-CG d.16.e.J.libera.fasta CGGGUA-ACGGGGAAUUAG--GGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.R.americana.fasta CGGGUA-ACGGGGAAUUGG--GGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.B.ostreae.fasta CGGGUA-ACGGGGAAUGCG--GGUUCGAUU-CCGGAGAGGCAGCCUG-AG d.16.e.A.dasyae.fasta CGGGUA-ACGGACCGUGGG--UGCGGGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.A.hermannii.fasta CGGGUA-ACGGACCGUGGG--UGCGGGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.N.helminthoides.fasta CGGGUA-ACGGACCGUGGG--UGCGGGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.B.gelatinosum.fasta CGGGUA-ACGGACCGUGGG--UGCGGGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.N.tortuosa.fasta CGGGUA-ACGGACCGUGGG--UGCGGGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.T.hispida.fasta CGGGUA-ACGGACCGUGGG--UGCGGGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.T.violacea.4.fasta CGGGUA-ACGGACCGUGGG--UGCGGGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.T.violacea.1.fasta CGGGUA-ACGGACCGUGGG--UGCGGGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.T.violacea.2.fasta CGGGUA-ACGGACCGUGGG--UGCGGGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.N.shawii.fasta CGGGUA-ACGGACCGUGGG--UGCGGGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.B.investiens.fasta CGGGUA-ACGGACCGUGGG--UGCGGGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.B.macrosporum.fasta CAGGUG-ACGGACCGUGGG--UGCGGGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.A.plicata.fasta CGGGUA-ACGGACCGUGGG--UGCGGGACU-CCGGAGAGGGAGCCUG-AG d.16.e.C.officinalis.fasta CGGGUA-ACGGACCGUGGG--UGCGGGACU-CCGGAGAGGGAGCCUG-AG d.16.e.R.carriebowensis.fasta CGGGUA-ACGGACCGUGGG--UGCGGGACU-CCGGAGAGGGAGCCUG-AG d.16.e.B.hamifera.fasta CGGGUA-ACGGACCGUGGG--UGCGGGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.G.vagum.fasta CGGGUA-ACGGACCGUGGG--UGCGGGACU-CCGGAGAGGGAGCCUG-AG d.16.e.C.crispus.fasta CGAGUG-ACGGAUCGUGGG--UGCGAGACU-CCGGAGAGGGAGCCUG-AG d.16.e.H.plana.fasta CGGGUA-ACGGACCGUGGG--UGCGGGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.R.leptophylla.fasta CGGGUA-ACGGACCGUGGG--UGCGGGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.P.pulvinata.fasta CGGGUA-ACGGACCGUGGG--UGCGGGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.C.rubrum.fasta CGGGUA-ACGGACCGUGGG--UGCGGGACU-CCGGAGAGGGAGCCUG-AG d.16.e.Gracilariopsis.sp.fasta CGGGUA-ACGGACCGUGGG--UGCGGGACU-CCGGAGAGGGAGCCUG-AG d.16.e.B.moritziana.fasta CGGGUA-ACGGACCGUGGG--UGCGGGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.H.rubra.fasta CGGGUA-ACGGACCGUGGG--UGCGGGAYU-CCGGAGAGGGAGCCUG-AG d.16.e.D.grisea.fasta CGGGU--ACGGAGGAUCAG--GGUCUGAUU-CCGGAGAAGGCGCCUU-AA d.16.e.N.fowleri.fasta CGGGUA--CGGGGAAUCAG--UGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.N.gruberi.fasta CGGGUA--CGGGGAAUCAG--UGUUCGAUU-CCGGAGAGGGAGCCUG-AG a.16.e.Hexamita.sp.fasta CGCGUA-CCGGAGAAUUAG--GGUUCGACU-CCGGAGAAUGAGCAUG-AG d.16.e.T.foetus.fasta CGGGUA-ACGGGCGGUUAC--CGUCGGACUGCCGGAGAAGGCGCCUG-AG d.16.e.A.khaliulini.fasta CGGGUA-ACGGGGAAUAUG--GGUUUUAUU-CCGGAGAGGGAGCCUG-AG d.16.e.E.aedis.fasta CGGGUA-ACGGGGAAUAUG--GGUUUUAUU-CCGGAGAGGGAGCCUG-AG d.16.e.A.connecticus.fasta CGGGUA-ACGGGGAAUAUG--GGUUUUAUU-CCGGAGAGGGAGCCUG-AG d.16.e.I.barri.fasta CGGGUA-ACGGGGAAUAUG--GGUUUUAUU-CCGGAGAGGGAGCCUG-AG d.16.e.A.ferocious.fasta CGGGUA-ACGGGGAAUAUG--GGUUUUAUU-CCGGAGAGGGAGCCUG-AG d.16.e.Amblyospora.sp.fasta CGGGUA-ACGGGGAAUAUG--GGUUUUAUU-CCGGAGAGGGAGCCUG-AG d.16.e.C.lunata.fasta CGGGUA-ACGGGGAAUCAG--AGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.P.anophelis.fasta UGGGUA-ACGGGGGAU-CA--AGUCCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.Hazardia.sp.fasta CGGGUA-ACGGGGAAUCGG--GGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.H.milleri.fasta CGGGUA-ACGGGGAAUCGG--GGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.P.simulii.fasta CGGGUA-ACGGGGGAUCAG--GGUUUGAUU-CCGGAGAAGGAGCCUG-AG d.16.e.W.palustris.fasta CGGGUA-ACGGGGGAUCAG--GGUUUGAUU-CCGGAGAAGGAGCCUG-AG d.16.e.Nosema.sp.03.fasta CGGAUA-ACGG--UAUUACUUUGUAAUAUU-CCGGAGAAGGAGCCUG-AG d.16.e.Nosema.sp.05.fasta CGGAUA-ACGG--UACUACUUUGUAAUAUU-CCGGAGAAGGAGCCUG-AG d.16.e.Endoreticulatus.sp.fast CGGAUA-ACGG--UAUUACUUUGUAAUAUU-CCGGAGAAGGAGCCUG-AG d.16.e.Nosema.sp.02.fasta CGGAUA-ACAGAGUAUUACUUUGUAAUAUU-CCGGAGAAGGAGCCUG-AG d.16.e.N.spodopterae.fasta CGGAUA-ACGG--UAUUACUUUGUAAUAUU-CCGGAGAAGGAGCCUG-AG d.16.e.N.trichoplusiae.fasta CGGAUA-ACGG--UAUUACUUUGUAAUAUU-CCGGAGAAGGAGCCUG-AG d.16.e.N.bombycis.27.fasta CGGAUA-ACGG--UAUUACUUUGUAAUAUU-CCGGAGAAGGAGCCUG-AG d.16.e.N.bombycis.02.fasta CGGAUA-ACGG--UAUUACUUUGUAAUAUU-CCGGAGAAGGAGCCUG-AG d.16.e.V.imperfecta.fasta CGGAUA-ACGG--UAUUACUUUGUAAUAUU-CCGGAGAAGGAGCCUG-AG d.16.e.N.furnacalis.fasta CGGAUA-ACGG--UAUUACUUUGUAAUAUU-CCGGAGAAGGAGCCUG-AG d.16.e.Microsporidium57864.fas CGGGUA-ACGG--UAUUACUUUGUAAUAUU-CCGGAGAAGGAGCCUG-AG d.16.e.Vairimorpha.sp.C21.fast CGGGUA-ACGG--UAUUACUUUGUAAUAUU-CCGGAGAAGGAGCCUG-AG d.16.e.N.oulemae.fasta CGGGUA-ACGG--UAUUACUUUGUAAUAUU-CCGGAGAAGGAGCCUG-AG d.16.e.N.necatrix.fasta CGGGUA-ACGG--UAUUACUUUGUAAUAUU-CCGGAGAAGGAGCCUG-AG d.16.e.V.necatrix.fasta CGGGUA-ACGG--UAUUACUUUGUAAUAUU-CCGGAGAAGGAGCCUG-AG d.16.e.N.apis.fasta CGGGUA-ACGG--UAUUACUUUGUAAUAUU-CCGGAGAAGGAGCCUG-AG d.16.e.O.occidentalis.fasta CGGGUA-ACGG--UAUUACUUUGUAAUAUU-CCGGAGAAGGAGCCUG-AG d.16.e.Microsporidium.sp.DP119 CGAAUA-ACGGGAAAUUAG--GGUUUUAUU-CCGGAGAGGGAGCCUG-AG d.16.e.V.corneae.fasta CGGUUG-ACGGGAAAUUAG--GGUUUUGUA-CCGGAGAGGGAGCCUG-AG d.16.e.A.michaelis.fasta CGGGUA-CGGGGAAGGCAAC---UUCGAUU-CCGGAGAGGGCGCCUUUAG d.16.e.T.contejeani.fasta CGGGUA-ACGGGGAAUUAG--GGUUCUAUU-CCGGAGAAGGAGGCUG-AG d.16.e.E.hellem.fasta CGGGAG-ACGGGGGAUCAG--GGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.Encephalitozoon.sp.fast CGGGAG-ACGGGGGAUCGG--GGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.E.cuniculi.fasta CGGGAU-ACGGGGGAUCAG--GGUUUGGUU-CCGGAGAGGGAGCCUG-AG d.16.e.O.colligata.fasta CGGGAG-ACGGGGGAUUAG--GGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.E.salmonis.fasta CGGGUA-ACGGGAAAUCAG--UGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.N.salmonis.fasta CGGGUA-ACGGGAAAUCAG--UGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.Enterocytozoonidae.sp.f CGGGUG-ACGGGAAAUCAG--UGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.E.bieneusi.fasta CGGGUA-ACGGGAAAUCAG--GGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.B.algerae.fasta CGGGUA-ACGGGGGAUGCA--CGUCUGAUA-CCGGAGAGGAAGCCUU-AG d.16.e.T.solenopsae.fasta CGGGUA-ACGGGGGAUGCA--CGUCUGAUA-CCGGAGAGGAAGCCUU-AG d.16.e.V.acridophagus.fasta UGGGUA-ACGGGAGAUGAA--UGUCUGAUA-CCGGAGAGGAAGCCUU-AG d.16.e.Bacillidium.sp.fasta CGGGUA-ACGGAAAAUCAG--GGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.P.cristatellae.fasta CGGGUA-ACGGGAAAUCAG--UGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.Pleistophora.sp.fasta CGGUUG-ACGGGGAAUGAG--GGUUCUAUA-CCGGAGAGGGAGCCUG-AG d.16.e.O.operophterae.fasta CGGGUG-ACGGGAAAUCAG--GGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.F.magnivora.fasta CGGGU--ACGGGGGAUCAG--GGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.G.atherinae.fasta CGGGU--ACGGGGAAUUAU--CGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.Ichthyosporidium.sp.fas CGGAU--ACGGGGAAUUAU--CGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.L.acerinae.fasta CGGGU--ACGGGGAAUGAG--UGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.H.anguillarum.fasta CGGGU--ACGGGGAAUUGU--GGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.P.mirandellae.fasta CGGGU--ACGGGGAAUUAG--GGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.T.hominis.fasta CGGGU--ACGGGGAAUUAG--AGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.V.culicis.fasta CGGGU--ACGGGGAAUUAG--AGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.P.hippoglossoideos.fast CGGGU--ACGGGGAAUUAG--AGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.Microgemma.sp.fasta CGGGU--ACGGGGGAUUAG--GGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.S.lophii.fasta CGGGU--ACGGGGGAUUAG--GGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.Pleistophora.sp.LS.fast CGACU--ACGGGGAAGACG--AUUUCUAUU-CCGGAGAGGGAGCCUG-AG d.16.e.D.gammarellum.fasta CGGGU--ACGGGGAAUGAG--GGUUUGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.M.prosopium.fasta CGGGU--ACGGGGAAUUAU--UGUUCGAUU-CCGGAGAGGGAGCCUG-AG d.16.e.A.scoticae.fasta CGGGUG-ACGGGGGGUGAG--AGCCUGAUA-CCGGAGAGGGAGCCUG-AG d.16.e.P.whitei.fasta CGGGUG-ACGGGGGGUGAG--AGCCCGGGA-CCGGAGAGGGAGCCUG-AG a.16.c.C.coccineum.fasta GCAUGCUU----AACACAUGCAAGUUG-UACUGUAUA------------- a.16.c.C.ruber.fasta GCAUGCUU----AACACAUGCAAGUUG-AACGUAAAA------------- d.16.c.N.tabacum.fasta GCAUGCUU----AACACAUGCAAGUCG-GACGGGAAG------------- d.16.c.S.oleracea.fasta GCAUGCUU----AACACAUGCAAGUCG-GACGGGAAG------------- d.16.c.Z.mays.fasta GCAUGCUU----AACACAUGCAAGUCG-AACGGGAAG------------- d.16.c.M.polymorpha.fasta GCAUGCUU----AACACAUGCAAGUCG-UACGGGAAGG---------AUC d.16.c.R.communis.fasta GCAUGCUU----AACACAUACAAGUCG-GACGGGAAG------------- d.16.c.C.vulgaris.fasta GCAUGCUU----AACACAUGCAAGUCG-UACGCAUGCAAUU-------UG d.16.c.P.wickerhamii.fasta GCAUGCUU----AACACAUGCAAGUUG-UACGAAGGUA-UU-------UA d.16.c.P.minor.fasta GUAUGCCU----AACACAUGCAAGUCG-AAC-----------------UA d.16.c.N.olivacea.fasta GCAUGCUU----AACACAUGCAAGUCG-AACGGUGCUUAUGGCAAAGAUU d.16.c.P.parkeae.fasta GCAUGCUU----AACACAUGCAAGUCG-AACGGUGUUUUU--------UU d.16.c.C.reinhardtii.fasta GCAUGCUU----AACACAUGCAAGUCG-AACGAGCAAA------------ b.16.m.A.castellanii.fasta ACAUAUUU---UAACACAUGCAAAUCG-AACG------------------ d.16.c.P.thurberi.fasta NNNNNNNN---NNACACAUGCAAGUUU-UACU------------------ b.16.m.C.crispus.fasta GU-UAGCU---UAACACAUGCAAGCUA-AAAU------------------ d.16.c.T.gondii.fasta AU-GUGCU---UAACACAUGCUAAUUG-AAUGGUAUUAA----------- b.16.m.N.crassa.fasta AAAUACUU----GACACAUGCUAAUCG-AACGUUUAAUU------UUUGG b.16.m.P.anserina.fasta AAAUACUU----GACACAUGCUAAUCG-AACGUUUAAUUAAA--UUUUAC b.16.m.P.chrysogenum.fasta AAGUACUU----GACACAUGCUAAUCG-AACGACUAAUU----------- b.16.m.E.nidulans.fasta AAGUACUU----GACACAUGCUAAUCG-AACGACUAAUU----------- b.16.m.S.cerevisiae.fasta AAGGACAU----GACGCAUACGAGUCA-UACG-UUUAUUA-----UUGAU b.16.m.W.saturnus.m.fasta AGAGACAU----AACACAUGCAAAUCA-AACG-AUUAUU-------UAAU b.16.m.P.minor.fasta -------------------------------------------------- d.16.c.P.falciparum.fasta --UUAUAU----UGCGAGUUUGAUCCU-AGCUCAGAAUUA-----ACGCU d.16.c.B.bovis.fasta ACGUACUU--UUAACACAUGCUAAUUA-AAUU-UAAAAUA-----UUAAA b.16.m.T.pyriformis.fasta CAUGGCUC--GGGAUUAACGCUAAUUA-GACGCCUAACAC-----AUGCG d.16.m.S.sinuspaulianus.fasta -AAGGUGU--AGAGGUGAGGAUAGUAA-AUAAGAUACCC-------UGUA b.16.m.P.tetraurelia.fasta AAAUGCAU----UACACACGCAAGUUU-UAUUUUACACAAGA--ACCUUC b.16.m.D.discoideum.fasta GUGGGCUU----UAUACAUGCAAGUUG-AACGCUAUUGAA---------- d.16.m.P.polycephalum.fasta ACUUACUU----GAUACAUGCUAGUCG-AACGCUUAUAUG--------AG b.16.m.P.littoralis.fasta GUCUGCUU---GAAUACAUGCGAGUCG-AAUGAUUUAGAU---------- b.16.m.P.wickerhamii.fasta GUAGGCUU----AACACAUGCAAGUUG-UACGUUUUUUAU---------- d.16.c.H.africana.fasta GCAUGCUU----AACACAUGCAAGUUG-AACGAGAAAUAG---------- d.16.c.C.fragile.fasta AUAUGCUU----AACACAUGCAAGUCG-AACGAAUAUUAAGU--UUUCUU d.16.c.C.sertularioides.fasta GCAUGCUU----AACACAUGCAAGUUG-AACGUAUUGGCAGC--UCCUUC d.16.c.C.humicola.fasta GCAUGCUU----AACACAUGCAAGUCG-UACGGGUA--------AUGGCU d.16.c.P.uvella.fasta GCAUGCUU----AACACAUGCAAGUCG-GACGAAUAUGGUGU--AAGGAU a.16.c.G.nostochinearum.fasta GUAUGCUU----AACACAUGCAAGUCG-AACGGAGA-UCGAAAGA----- a.16.c.G.wittrockiana.fasta GUAUGCUU----AACACAUGCAAGUCG-AACGAAAA-UUGAAAAA----- d.16.c.C.paradoxa.fasta GUAUGCUU----AACACAUGCAAGUCG-AACGAAGA-UCGCAAGA----- d.16.y.C.paradoxa.fasta GUAUGCUU----AACACAUGCAAGUCG-AACGAAGA-UCGCAAGA----- d.16.c.Cryptomonas.sp.fasta GUAUGCUU----AACACAUGCAAGUCG-UACGAAAG-UUUUUA-A----- d.16.c.P.palmata.fasta GUAUGCUU----AACACAUGCAAGUCG-AACGAAGG-UUUU---A----- d.16.c.H.akashiwo.fasta GUAUGCUU----AACACAUGCAAGUCG-AACGAGAGGUUUUUAAAGAUUU d.16.c.S.pseudocostatum.fasta GUAUGCCU----AACACAUGCAAGUCG-UACGGGAG-UUUUUAA------ d.16.c.P.littoralis.fasta GUAUGCUU----UACACAUGCAAGUCG-UACGAAAG-UGUUAAAA----- d.16.c.C.caldarium.fasta GUAUGCCU----AACACAUGCAAGUCG-UACGAGAA--UUUUA------- a.16.c.E.huxleyi.fasta GUAUGCUU----AACACAUGCAAGUCG-AACGAGAGUUUUUAA------- d.16.c.E.gracilis.fasta GUAUGCUU----AACACAUGCAAGUUG-AACGAAAUUACUAGCAAUAGUA d.16.b.Anabaena.sp.fasta GUAUGCUU----AACACAUGCAAGUCG-AACGG-UCUCUUCGG------- d.16.b.Chlorogloeopsis.PCC7518 GUAUGCAU----AACACAUGCAAGUCG-AACGG-UCUGGAAAC------- d.16.b.Synechococcus.sp.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGG-GCUCUUCGG------- d.16.b.Synechocystis.PCC6803.G GUAUGCCU----AACACAUGCAAGUCG-AACGGAGUUCUUCGG------- d.16.b.O.agardhii.fasta GUCUGCUU----AACACAUGCAAGUCG-AACGGAAUCCUUCGG------- d.16.b.Pleurocapsa.7516.fasta GUAUGCUU----AACACAUGCAAGUCG-AACGAAGUCUUUUAG------- d.16.b.M.aeruginosa.fasta GCGUGCCU----AACACAUGCAAGUCG-AACGGGAAUCUUCGG------- b.16.m.C.reinhardtii.fasta A-GCG-GU---GGUUU-AUACAUG-CG-AGCUUA---------AAAGAUU d.16.m.C.eugametos.fasta UUAUG-GG---AAGUA-AUACAUG-CG-AGUGAU---------AUAGAGU b.16.m.M.senile.fasta U-GUA-GA---AGGCA-AGUGGCC-CU-UUUAAU---------ACAUGCU d.16.b.S.pneumoniae.fasta NNNNN-NN---NNNNN-NNNNNNN-NN-NNNNNN---------NNNNNNN d.16.b.S.pyogenes.fasta NNNNN-NN---NNNNN-NNNNNNN-NN-NNNNNN---------NNNNNNN d.16.b.B.anthracis.fasta GCGUG-CC---UAAUACAUGCAAG-UC-GAGCGA---------AUGGAUU d.16.b.B.cereus.1.fasta GCGUG-CC---UAAUACAUGCAAG-UC-GAGCGA---------AUGGAUU d.16.b.E.faecalis.fasta GCGUG-CC---UAAUACAUGCAAGUCG-AACGCUUCUUUCCUCCCGAGUG d.16.b.E.faecium2.fasta GCGUG-CC---UAAUACAUGCAAGUCG-AACGCUUCUUUUUCCACCGGAG d.16.b.L.monocytogenes.fasta GCGUG-CC---UAAUACAUGCAAGUCG-AACGAA-----CGGAGGAAGAG d.16.b.B.subtilis.fasta GCGUG-CC---UAAUACAUGCAAGUCG-AGCGGA----------CAGGUG d.16.b.B.subtilis.GEN.fasta GCGUG-CC---UAAUACAUGCAAGUCG-AGCGGA----------CAGAUG d.16.b.B.halodurans.fasta GCGUG-CC---UAAUACAUGCAAGUCG-AGCGGA----------CCAAAG d.16.b.S.aureus.fasta GCGUG-CC---UAAUACAUGCAAGUCG-AGCGAA----------CGGACG d.16.b.S.aureus.GEN.fasta GCGUG-CC---UAAUACAUGCAAGUCG-AGCGAA----------CGGACG d.16.b.L.lactis.GEN.fasta GCGUG-CC---UAAUACAUGCAAGUUG-AGCGCU---------GAAGGUU d.16.b.S.pyogenes.GEN.fasta GCGUG-CC---UAAUACAUGCAAGUAG-AACGCU---------GAGAACU d.16.b.L.acidophilus.fasta GCGUG-CC---UAAUACAUGCAAGUCG-AGCGAG-CUGAACCAACAGAUU d.16.b.M.capricolum.fasta GCUGG-CC---UAAUACAUGCAAGUCG-AACG-----------------G d.16.b.M.mycoides.fasta GCAUG-CC---UAAUACAUGCAAGUCG-AACG-----------------G d.16.b.E.rhusiopathiae.fasta GCGUG-CC---UAAUACAUGCAAGUCG-AACGAA---------GUGAA-G d.16.b.C.innocuum.fasta GCAUG-CC---UAAUACAUGCAAGUCG-AACGAA---------GUCUUCA d.16.b.M.genitalium.fasta GCAUG-CC---UAAUACAUGCAAGUCG-AUCGGA---------AGUAGCA d.16.b.M.pneumoniae.GEN.fasta GCAUG-CC---UAAUACAUGCAAGUCG-AUCGAA---------AGUAGUA d.16.b.M.pneumoniae.fasta GCAUG-CC---UAAUACAUGCAAGUCG-AUCGAA---------AGUAGUA d.16.b.M.gallisepticum.fasta GCAUG-CC---UAAUACAUGCAAGUCG-AUCGGA---------UGUAGCA d.16.b.U.urealyticum.fasta GCAUG-CC---UAAUACAUGCAAAUCG-AACGAA---------GCCUUUU d.16.b.U.urealyticum.GEN.fasta GCAUG-CC---UAAUACAUGCAAAUCG-AACGAA---------GCCUUUU d.16.b.M.hyopneumoniae.fasta GUGUG-CU---UAAUACAUGCAUGUUG-AACGGA---------AUAUUUU d.16.b.F.necrophorum.fasta GAAUGGCU---UAACACAUGCAAGUCG-AC---U---------CGAGU-- d.16.b.F.nucleatum.fasta GAAUG-CU---UAACACAUGCAAGUCU-AC---U---------UGAAUUU d.16.b.S.moniliformis.fasta GAAUG-CU---UAACACAUGCAAAUCU-AUGUAU---------GAAAUGU d.16.b.C.botulinum.F.fasta GCGUG-CU---UAACACAUGCAAGUCG-AGCGAU----GAAGCUUC---- d.16.b.C.tetani.fasta GCGUG-CU---UAACACAUGCAAGUCG-AGCGAU----GAAGCUUC---- d.16.b.C.perfringens.fasta GCGUG-CU---UAACACAUGCAAGUCG-AGCGAU----GAAGUUUC---- d.16.b.C.difficile.fasta GCGUG-CC---UAACACAUGCAAGUUG-AGCGA---------UUUA---- d.16.b.E.brachy.fasta GCGUG-CU---UAACACAUGCAAGUCG-AGCGAG----AAGUUUUGAAAA d.16.b.Epulopiscium.sp.fasta GCGUG-CU---UAACACAUGCAAGUCG-AACGG---------ACUA---- d.16.b.H.chlorum.fasta GCAUG-CC---UAACACAUGCAAGUCG-AACGGA----GAGCGGAAG--- b.16.m.G.max.fasta AUAUGCUU----AACACAUGCAAGUCG-AACGUUG--------------- b.16.m.O.berteriana.fasta AUAUGCUU----AACACAUGCAAGUCG-AACGUUG--------------- b.16.m.S.cereale.fasta AUAUGCUU----AACACAUGCAAGUCG-AACGUUG--------------- b.16.m.T.aestivum.fasta AUAUGCUU----AACACAUGCAAGUCG-AACGUUG--------------- d.16.m.Z.mays.fasta AUAUGCUU----AACACAUGCAAGUCG-AACGUUG--------------- b.16.m.M.polymorpha.fasta AUAUGCUU----AACACAUGCAAGUCG-AACGUUG--------------- b.16.m.N.olivacea.fasta AUAGGCCU----AACACAUGCAAGUCG-AACGCUU--------------- d.16.b.G.liquefaciens.fasta GCAUGCUU----AACACAUGCAAGUCG-CACGAAC--------------- d.16.b.B.japonicum.fasta GCAGGCUU----AACACAUGCAAGUCG-AGCGGG---------------- d.16.b.R.acidophilus.fasta GCAGGCUU----AACACAUGCAAGUCG-AACGGG---------------- d.16.b.A.caulinodans.fasta GCAGGCCU----AACACAUGCAAGUCG-AGCG------------------ d.16.b.B.quintana.fasta GCAGGCUU----AACACAUGCAAGUCG-AGCGCAC--------------- d.16.b.M.loti.fasta GCAGGCUU----AACACAUGCAAGUCG-AGCGC----------------- d.16.b.A.tumefaciens.fasta GCAGGCUU----AACACAUGCAAGUCG-AACGC----------------- d.16.b.B.bacilliformis.fasta GCAGGCUU----AACACAUGCAAGUCG-AGCGCAC--------------- d.16.b.B.henselae.fasta GCAGGCUU----AACACAUGCAAGUCG-AGCGCAC--------------- d.16.b.B.melitensis.fasta GCAGGCUU----AACACAUGCAAGUCG-AGCGC----------------- d.16.b.R.orientis.fasta GCAGGCCU----AACACAUGCAAGUCG-AACGCA---------------- d.16.b.Methylobacterium.sp.fas GCAGGCUU----AACACAUGCAAGUCG-AGCGGG---------------- d.16.b.R.bellii.fasta GUAUGCUU----AACACAUGCAAGUCG-AACGGACUAAUU---------- d.16.b.R.felis.URRWXCal2.fasta GUAUGCUU----AACACAUGCAAGUCG-GACGGACUAAUU---------- d.16.b.R.prowazekii.fasta GUAUGCUU----AACACAUGCAAGUCG-AACGGAUUAACU---------- d.16.b.R.prowazekii.GEN.fasta GUAUGCUU----AACACAUGCAAGUCG-AACGGAUUAACU---------- d.16.b.R.rickettsii.fasta GUAUGCUU----AACACAUGCAAGUCG-AACGGACUAAUU---------- d.16.b.A.calcoaceticus.fasta GCAGGCUU----AACACAUGCAAGUCG-AGCGG-G--G-------AAGGU d.16.b.P.pacificensis.fasta GCAGGCUU----AACACAUGCAAGUCG-AGCGG-AACG-------AUGAU d.16.b.C.marismortui.fasta GCAGGCCU----AACACAUGCAAGUCG-AGCGGUAACA-------GGUCC d.16.b.H.halodenitrificans.fas GCAGGCCU----AACACAUGCAAGUCG-AGCGGAAACG-------AUGGA d.16.b.P.aeruginosa.fasta GCAGGCCU----AACACAUGCAAGUCG-AGCGG--AUG-------AAGGG d.16.b.P.aeruginosa.GEN.fasta GCAGGCCU----AACACAUGCAAGUCG-AGCGG--AUG-------AAGGG d.16.b.Pseudomonas.sp.fasta GCAGGCCU----AACACAUGCAAGUCG-AGCGG--AUG-------AUGGG d.16.b.P.putida.fasta GCAGGCCU----AACACAUGCAAGUCG-AGCGG--AUG-------AGAAG d.16.b.C.burnetii.fasta GCAUGCUU----AACACAUGCAAGUCG-AACGGCAGCGC------AGGGA d.16.b.M.capsulatus.fasta GCAUGCUU----AACACAUGCAAGUCG-AACGGUAAC------------A d.16.b.L.pneumophila.1.fasta GCAUGCUU----AACACAUGCAAGUCG-AACGGCAGCAU------UGUCU d.16.b.L.pneumophila.2.fasta GCAUGCUU----AACACAUGCAAGUCG-AACGGCAGCAU------UGUCU d.16.b.A.vinosum.fasta GCAUGCCU----AACACAUGCAAGUCG-AACGCGAAA------------G d.16.b.Beggiatoa.sp.fasta GUAUGCUU----AACACAUGCAAGUCG-AACGGGGGU------------- d.16.b.A.hydrophila.fasta GCAGGCCU----AACACAUGCAAGUCG-AGCGGCAGCGG-----GAAAGU d.16.b.S.putrefaciens.fasta GCGGGCCU----AACACAUGCAAGUCG-AGCGGCAGCAC-------AAGG d.16.b.C.freundii.fasta GCAGGCCU----AACACAUGCAAGUCG-AACGGUAGCA------CAGAGG d.16.b.S.dysenteriae.1.fasta GCAGGCCU----AACACAUGCAAGUCG-AACGGUAACA------GGAAGC d.16.b.K.pneumoniae.fasta GCAGGCCU----AACACAUGCAAGUCG-AGCGGUAGCA------CNNGAG d.16.b.P.shigelloides.fasta GCAGGCCU----AACACAUGCAAGUCG-AGCGGUAACA------CAGAGG d.16.b.Y.pestis.fasta GCAGGCCU----AACACAUGCAAGUCG-AGCGGCAGCG------GGAAGU d.16.b.Y.pseudotuberculosis.fa GCAGGCCU----AACACAUGCAAGUCG-AGCGGCAGCG------GGAAGU d.16.b.S.dysenteriae.2.fasta GCAGGCCU----AACACAUGCAAGUCG-AACGGUAACA------GAAAGC d.16.b.E.coli.0157G.GEN.fasta GCAGGCCU----AACACAUGCAAGUCG-AACGGUAACA------GGAAGA d.16.b.E.coli.EDL.GEN.fasta GCAGGCCU----AACACAUGCAAGUCG-AACGGUAACA------GGAAGA d.16.b.E.coli.fasta GCAGGCCU----AACACAUGCAAGUCG-AACGGUAACA------GGAAGA d.16.b.E.coli.K12.GEN.fasta GCAGGCCU----AACACAUGCAAGUCG-AACGGUAACA------GGAAGA h.16.b.E.coli.hlxnum.fasta GCAGGCCU----AACACAUGCAAGUCG-AACGGUAACA------GGAAGA m.16.b.E.coli.mhg.fasta GCAGGCCU----AACACAUGCAAGUCG-AACGGUAACA------GGAAGA s.16.b.E.coli.schem.fasta GCAGGCCU----AACACAUGCAAGUCG-AACGGUAACA------GGAAGA d.16.b.S.typhimurium.fasta GCAGGCCU----AACACAUGCAAGUCG-AACGGUAACA------GGAAGC d.16.b.S.marcescens.fasta GCAGGCUU----AACACAUGCAAGUCG-AGCGGUAGCA------CANGGG d.16.b.E.tarda.fasta NNNNNNNN----NNNNNNNNNNNNNNN-NNNNNNNNNN------NNNNNN d.16.b.P.vulgaris.fasta GCAGGCCU----AACACAUGCAAGUCG-AGCGGUAACA------GGAGAA d.16.b.V.cholerae4.fasta GCAGGCCU----AACACAUGCAAGUCG-AGCGGCAGCA------CAGAGG d.16.b.V.cholerae5.fasta GCAGGCCU----AACACAUGCAAGUCG-AGCGGCAGCA------CAGAGG d.16.b.V.cholerae2.fasta GCAGGCCU----AACACAUGCAAGUCG-AGCGGCAGCA------CAGAGG d.16.b.V.cholerae6.fasta GCAGGCCU----AACACAUGCAAGUCG-AGCGGCAGCA------CAGAGG d.16.b.V.cholerae.fasta GCAGGCCU----AACACAUGCAAGUCG-AGCGGCAGCA------CAGAGG d.16.b.V.cholerae.GEN.fasta GCAGGCCU----AACACAUGCAAGUCG-AGCGGCAGCA------CAGAGG d.16.b.V.parahaemolyticus.fast GCAGGCCU----AACACAUGCAAGUCG-AGCGGAAACGAGU---UAUCUG d.16.b.H.influenzae7.fasta GCAGGCUU----AACACAUGCAAGUCG-AACGGUAGCAG-----GA-GAA d.16.b.H.influenzae8.fasta GCAGGCUU----AACACAUGCAAGUCG-AACGGUAGCAG-----GA-GAA d.16.b.H.influenzae6.fasta GCAGGCUU----AACACAUGCAAGUCG-AACGGUAGCAG-----GA-GGA d.16.b.H.influenz.fasta GCAGGCUU----AACACAUGCAAGUCG-AACGGUAGCAG-----GA-GAA d.16.b.H.influenzae.fasta GCAGGCUU----AACACAUGCAAGUCG-AACGGUAGCAG-----GA-GAA d.16.b.P.multocida.fasta GCAGGCUU----AACACAUGCAAGUCG-AACGGUAGCAG-----GAAGAA d.16.b.P.multocida.GEN.fasta GCAGGCUU----AACACAUGCAAGUCG-AACGGUAGCAG-----GAAGAA d.16.b.X.albilineans.fasta GCAGGCCU----AACACAUGCAAGUCG-AACGGCAGCACA-----GUGGU d.16.b.X.campestris.fasta GCAGGCCU----AACACAUGCAAGUCG-AACGGCAGCACA-----GUAAG d.16.b.X.fastidiosa.GEN.fasta GCAGGCCU----AACACAUGCAAGUCG-GACGGCAGCACG-----UUGGU d.16.b.D.nodosus.fasta GCAUGCUU----AACACAUGCAAGUCG-AACGGGGUUAU---------GU d.16.b.F.tularensis.fasta GCAUGCUU----AACACAUGCAAGUCG-AACGGUAACA------------ d.16.b.B.parapertussis.fasta GGAUGCUU----UACACAUGCAAGUCG-GACGGCAGCAC------GG--- d.16.b.B.pertussis.fasta GGAUGCUU----UACACAUGCAAGUCG-GACGGCAGCAC------GG--- d.16.b.B.bronchiseptica2.fasta GGAUGCUU----UACACAUGCAAGUCG-GACGGCAGCAC------GG--- d.16.b.u.proteobacterium.fasta NNAUGCUU----UACACAUGCAAGUCG-AACGGCAGCGC------GG--- d.16.b.B.mallei.fasta GCAUGCCU----UACACAUGCAAGUCG-AACGGCAGCAC------GG--- d.16.b.Burkholderia.sp.fasta GCAUGCCU----UACACAUGCAAGUCG-AACGGCAGCAC------GG--- d.16.b.N.meningitidis.MD58.GEN GCAUGCUU----UACACAUGCAAGUCG-GACGGCAGCAC------AGAGA d.16.b.N.meningitidis.Z2491.GE GCAUGCUU----UACACAUGCAAGUCG-GACGGCAGCAC------AGAGA d.16.b.N.gonorrhoeae.fasta GCAUGCUU----UACACAUGCAAGUCG-GACGGCAGCAC------AGGGA d.16.b.C.testosteroni.fasta GCAUGCUU----UACACAUGCAAGUCG-AACGGUAACAG------GU--- d.16.b.D.desulfuricans.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGCGAAAGG----------- d.16.b.M.xanthus.fasta GCGUGCCU----AACACAUGCAAGUCG-AGCGCGAAUAG----------- d.16.b.D.thermophilus.fasta GCGUGCCU----AACACAUGCAAGUCA-GGGGGAAAGCU----------- d.16.b.B.burgdorferi.fasta GUGCGU---C-UUAAGCAUGCAAGUCA-AACGGGAU--GU---------- d.16.b.B.burgdorferi.GEN.fasta GUGCGU---C-UUAAGCAUGCAAGUCA-AACGGGAU--GU---------- d.16.b.B.hermsii.fasta GUGCGU---C-UUAAGCAUGCAAGUCA-GACGGAAU--GU---------- d.16.b.S.aurantia.fasta GCACGU---U-UUAAGNAUGCAAGUCG-AAUGGCAGUGGG---------- d.16.b.T.pallidum.A.fasta GUGCGU---U-UUAAGCAUGCAAGUCG-AACGGCAA-GGA---------- d.16.b.L.illini.fasta GCGCGU---C-UUAAACAUGCAAGUCG-AGCGGCAGCACU---------- d.16.b.L.interrogans.fasta GCGCGU---C-UUAAACAUGCAAGUCA-AGCGG-AGUAGC---------- d.16.b.C.trachomatis.GEN.fasta GCGUGG---A-UGAGGCAUGCAAGUCG-AACGGAGCAAUU---------- d.16.b.C.trachomatis.L2.fasta GCGUGG---A-UGAGGCAUGCAAGUCG-AACGGAGCAAUU---------- d.16.b.C.muridarum.fasta GCGUGG---A-UGAGGCAUGCAAGUCG-AACGGAACAAUU---------- d.16.b.C.pneumoniae.AR39.fasta GCGUGG---A-UGAGGCAUGCAAGUCG-AACGGAAUAAUG---------- d.16.b.C.pneumoniae.fasta GCGUGG---A-UGAGGCAUGCAAGUCG-AACGGAAUAAUG---------- d.16.b.C.pneumoniae.J138.fasta GCGUGG---A-UGAGGCAUGCAAGUCG-AACGGAAUAAUG---------- d.16.b.C.pneumoniae.CWL029.fas GCGUGG---A-UGAGGCAUGCAAGUCG-AACGGAAUAAUG---------- d.16.b.C.psittaci.fasta GCGUGG---A-UGAGGCAUGCAAGUCG-AACGGAAUAAUG---------- d.16.b.D.radiodurans.1.fasta GCGUGC---U-UAAGACAUGCAAGUCG-AACGCGGU-------------- d.16.b.D.radiodurans.GEN.fasta GCGUGC---U-UAAGACAUGCAAGUCG-AACGCGGU-------------- d.16.b.B.fragilis.fasta ACAGGC---U-UAACACAUGCAAGUCG-AGGGGCAUCAGG---------- d.16.b.P.gingivalis.fasta AUAGGC---U-NAACACAUGCAAGUCG-AGGGGCAGCAUG---------- d.16.b.C.vibrioforme.fasta NCNUGC---C-UAACACAUGCAAGUCA-AAGGAAAGCGC----------- d.16.b.C.jejuni.fasta GCGUGC---C-UAAUACAUGCAAGUCG-AACGAUGAAGCU---------- d.16.b.C.jejuni.GEN.fasta GCGUGC---C-UAAUACAUGCAAGUCG-AACGAUGAAGCU---------- d.16.b.C.sputorum.fasta AUUUAUAAAU-AAAAAGUUAUAAAUAU-AACAAUAAGCUU---------- d.16.b.H.pylori.26695.GEN.fast GCGUGC---C-UAAUACAUGCAAGUCG-AACGAUGAAGCU---------- d.16.b.H.pylori.J99.GEN.fasta GCGUGC---C-UAAUACAUGCAAGUCG-AACGAUGAAGCU---------- d.16.b.H.pylori2.fasta GCGUGC---C-UAAUACAUGCAAGUCG-AACGAUGAAGCU---------- d.16.b.A.capsulatum.fasta GCGUGCCU----AACACAUGCAAGUCG-AACAAGAAAGGGA--------- d.16.b.H.foetida.fasta GCGUGCCU----AACACAUGCAAGUCG-GAUGUG---------------- d.16.b.A.globiformis.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAUCCGG--------- d.16.b.M.luteus.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAAGCCC--------- d.16.b.Frankia.sp.fasta GCGUGCUU----AACACAUGCAAGUCG-AGCGGGGAGCUUC--------- d.16.b.S.bottropensis.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAACC----------- d.16.b.S.scabiei.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAACC----------- d.16.b.S.neyagawaensis.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAAGC----------- d.16.b.S.diastatochromogenes.f GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAACC----------- d.16.b.Streptomyces.sp.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAAGC----------- d.16.b.S.acidiscabies.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAAGC----------- d.16.b.S.griseus.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAAGC----------- d.16.b.S.ornatus.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAAGC----------- d.16.b.S.subrutilus.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAAGC----------- d.16.b.S.bikiniensis.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAAGC----------- d.16.b.S.galbus.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAACC----------- d.16.b.S.hygroscopicus.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAACC----------- d.16.b.S.lincolnensis.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAACC----------- d.16.b.S.coelicolor.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAACC----------- d.16.b.S.tendae.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAACC----------- d.16.b.S.ambofaciens.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAACC----------- d.16.b.S.eurythermus.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAACCU---------- d.16.b.S.nodosus.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAAGC----------- d.16.b.S.sampsonii.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAACCG---------- d.16.b.S.glaucescens.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAACC----------- d.16.b.S.pseudogriseolus.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAACC----------- d.16.b.S.caelestis.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAACC----------- d.16.b.S.bluensis.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAAGUC---------- d.16.b.S.espinosus.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAACC----------- d.16.b.S.mashuensis.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAACCU---------- d.16.b.S.rimosus.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAAGC----------- d.16.b.S.limosus.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAACCG---------- d.16.b.S.odorifer.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAACCG---------- d.16.b.S.felleus.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAACCG---------- d.16.b.S.albidoflavus.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAACCG---------- d.16.b.S.gougerotii.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAAGCC---------- d.16.b.S.rutgersensis.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAAGCC---------- d.16.b.S.intermedius.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAAGCC---------- d.16.b.S.thermodiastaticus.fas GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAAGCC---------- d.16.b.S.thermoviolaceus.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAAGCC---------- d.16.b.S.thermovulgaris.1.fast GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAACCU---------- d.16.b.S.thermovulgaris.2.fast GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAACCU---------- d.16.b.S.macrosporus.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGAUGAACCU---------- d.16.b.S.megasporus.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGCCGGCCUCG--------- d.16.b.S.thermolineatus.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGGUGAAGCC---------- d.16.b.M.tuberculosis.2.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGGAAAGGUCU--------- d.16.b.M.tuberculosis.3.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGGAAAGGUCU--------- d.16.b.M.avium.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGGAAAGGCCU--------- d.16.b.M.leprae.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGGAAAGGUCU--------- d.16.b.M.leprae.GEN.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGGAAAGGUCU--------- d.16.b.M.tuberculosis.CDC1551. GCGUGCUU----AACACAUGCAAGUCG-AACGGAAAGGUCU--------- d.16.b.M.tuberculosis.GEN.fast GCGUGCUU----AACACAUGCAAGUCG-AACGGAAAGGUCU--------- d.16.b.N.asteroides.fasta GCGUGCUU----AACACAUGCAAGUCG-AGCGGUAAGCCCC--------- d.16.b.R.erythropolis.fasta GCGUGCUU----AACACAUGCAAGUCG-AGCGGUAAGGCC---------- d.16.b.C.diphtheriae.fasta GCGUGCUU----AACACAUGCAAGUCG-AACGGAAAGGCCU--------- d.16.b.A.israelii.fasta NNNNNNNN----NNNNNAUGCAAGUCG-AACGGGUCUGCCU--------- d.16.b.B.hyodysenteriae.fasta AUGCGUCU----UAAGCAUGCAAGUCG-AGCGGGCUUAUUC--------- d.16.b.G.subterranea.fasta GCGCGCCU----AACACAUGCAAGUCG-AACGG--AGAAAG--------- d.16.b.P.miotherma.fasta GCGUGCGU----AACACAUGCAAGUCG-AACGG--GUUAUA--------- d.16.b.B.andersonii.fasta GCGUGUUU----UAGGCAUGCAAGUCG-AACGGCAGCGGGA--------- d.16.b.H.aurantiacus.fasta GCGUGCCU----AAUGCAUGCAAGUCG-AACG------------------ d.16.b.Leptospirillium.sp.fast GCGUGCCU----AACACAUGCAAGUGC-GACGUGAAAGGGG--------- d.16.b.A.aeolicus.fasta GCGUGCCU----AACACAUGCAAGUCG-UGCGCAGGGUCGGC-------- d.16.b.A.pyrophilus.fasta GCGUGCCU----AACACAUGCAAGUCG-UGCGCAGGCUCG-C-------- d.16.b.T.maritima.fasta GCGUGCCU----AACACAUGCAAGUCG-AGCGGGGGA--AAC-------- d.16.b.T.maritima.GEN.fasta GCGUGCCU----AACACAUGCAAGUCG-AGCGGGGGA--AAC-------- n.16.b.T.thermophilus.2.num.fa GCGUGCCU----AAGACAUGCAAGUCG-UGCGGGCCGCGGG--------- s.16.b.T.thermophilus.2.schem. GCGUGCCU----AAGACAUGCAAGUCG-UGCGGGCCGCGGG--------- d.16.b.T.thermophilus.2.fasta GCGUGCCU----AAGACAUGCAAGUCG-UGCGGGCCGCGGG--------- s.16.b.T.thermophilus.1.schem. GCGUGCCU----AAGACAUGCAAGUCG-UGCGGGCCGCGGG--------- n.16.b.T.thermophilus.1.num.fa GCGUGCCU----AAGACAUGCAAGUCG-UGCGGGCCGCGGG--------- d.16.b.T.thermophilus.1.fasta GCGUGCCU----AAGACAUGCAAGUCG-UGCGGGCCGCGGG--------- d.16.b.T.aquaticus.fasta GCGUGCCU----AAGACAUGCAAGUCG-UGCGGGCCGUGGG--------- d.16.b.T.roseum.fasta GCGUGCCU----AAUGCAUGCAAGUCG-GACGGGANGCACGC-------- d.16.b.P.marina.fasta GCAUGGAU----UAGGCAUGCAAGUC--CGCGCGAUAACU---------- d.16.b.P.staleyi.fasta GCAUGGAU----UAGGCAUGCAAGUCG-UGCGCGAUAUGU---------- d.16.b.P.Schlesner.fasta GCGUGGAU----UAGGCAUGCAAGUCG-AGCGGAGUCAGC---------- d.16.b.G.obscuriglobus.1.fasta GCAUGGAU----UAGGCAUGCAAGUCG-GGGGAAUCCCGC---------- d.16.b.I.pallida.fasta GCGUGGAU----UAGGCAUGCAAGUCG-AACGG---CCGC---------- d.16.a.P.abyssi.fasta GGGUCCGA--CUAAGCCAUGCGAGUCA-AGGGG---GCGUCC-------- d.16.a.P.horikoshii.fasta GGGUCCGA--CUAAGCCAUGCGAGUCA-AGGGG---GCGUCC-------- d.16.a.P.furiosus.fasta GGGUCCGA--CUAAGCCAUGCGAGUCA-AGGGG---GCGUCC-------- d.16.a.T.celer.fasta GGGUCCGA--CUAAGCCAUGCGAGUCA-UGGGG----------------- d.16.a.A.fulgidus.fasta GGCUGGGA--CUAAGCCAUGCGAGUCA-AGGGGCUUGUAUCC-------- d.16.a.N.equitans.fasta CCGUCCGG--CUAACCCAUGGAAGGCG-AGGGU----------------- d.16.a.A.pernix.K1.fasta GGGUAGGG--CUAAGCCAUGGGAGUCG-AACGC----------------- d.16.a.P.occultum.fasta GGGUGGGA--CUAAGCCAUGGGAGUCG-UGCGC----------------- d.16.a.T.tenax.fasta GGGUGGGG--CUAAGCCAUGCGAGUCG-CGCGC----------------- d.16.a.S.acidocaldarius.fasta GGGUAGGG--AUAAGCCAUGGGAGUCU-UACAC----------------- d.16.a.S.solfataricus.fasta GGGUAGGG--AUAAGCCAUGGGAGUCU-UACAC----------------- d.16.a.S.solfataricus.2.fasta GGGUGGGG--CUAAGCCAUGGGAGUCG-UACGC----------------- d.16.a.M.thermautotrophicus.1. GGGUUCGA--UUAAGCCAUGCAAGUCG-AACGA----------------- d.16.a.M.thermautotrophicus.2. GGGUUCGA--UUAAGCCAUGCAAGUCG-AACGA----------------- d.16.a.M.formicicum.fasta GGUUUCGA--UUAAGCCAUGCAAGUCG-AACGA----------------- d.16.a.M.vannielii.fasta GGGUUCGA--CUAAGCCAUGCGAGUCU-AUGGU----------------- d.16.a.H.marismortui.rrnA.fast GAGUCCGA--UUUAGCCAUGCUAGUCG-CACGG----------------- d.16.a.H.marismortui.rrnB.fast GAGUCCGA--UUUAGCCAUGCUAGUUG-CACGA----------------- d.16.a.Halobacterium.sp.fasta GAGUCCGA--UUUAGCCAUGCUAGUUG-UGCGG----------------- d.16.a.N.bangense.fasta GAGUCCGA--UUUAGCCAUGCUAGUUG-UACGA----------------- d.16.a.N.innermongoliae.fasta GAGUCCGA--UUUAGCCAUGCUAGUUG-UACGA----------------- d.16.a.H.volcanii.fasta GGGUCCGA--UUUAGCCAUGCUAGUUG-CACGA----------------- d.16.a.M.hungatei.fasta GGGUUUGA--CUAAGCCAUGCGAGUCG--AGAG----------------- d.16.a.P.torridus.fasta AGUUCCGA--CUAAGCCAUGCGAGUCA-AGGGG----------------- d.16.a.T.acidophilum.fasta GGUUCCGA--CUAAGCCAUGCAAGUCA-UGGGG----------------- a.16.e.G.ardeae.fasta AGACGGCC----CGCACAUCCAAGGAC-GGCAGCAGGC------------ d.16.e.G.intestinalis.fasta AGACGGCC----CGCACAUCCAAGGAC-GGCAGCAGGC------------ a.16.e.G.muris.fasta AGACGGCC----CGUACAUCCAAGGAC-GGCAGCAGGC------------ d.16.e.A.bracteata.fasta AGACGGCU----CCUACGUCCAAGGAC-GGCAGCAGGC------------ d.16.e.Glomus.sp.W3349.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.S.cerradensis.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ a.16.e.G.intraradices.fasta AAACGGCU----ACCACAUCCAAGGAU-GGCAGCAGGC------------ d.16.e.S.culisetae.fasta AAACGGCU----ACCACUUCUAAGGAG-GGCAGCAGGC------------ a.16.e.P.balamuthi.fasta AAACGGCU----ACCACUUCCAAGGAA-GGCAGCAGGC------------ d.16.e.A.flavus.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.T.caries.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.M.circinelloides.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.M.racemosus.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.R.oryzae.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ a.16.e.M.edulis.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ a.16.e.P.magellanicus.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ b.16.e.E.granulosus.fasta AAACGGCU----ACCACUUCCAAGGGA-GGCAGCAGGC------------ d.16.e.D.melanogaster.fasta AAACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ b.16.e.C.koreana.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ b.16.e.A.australis.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ b.16.e.O.utahensis.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ b.16.e.A.salina.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.M.musculus.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.R.norvegicus.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.H.sapiens.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.O.cuniculus.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.X.borealis.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.X.laevis.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.A.castellanii.fasta AAAUGGCU----ACCACUUCUAAGGAA-GGCAGCAGGC------------ d.16.e.B.mandrillaris.fasta AAAUGGCU----ACCACUUCUAAGGAA-GGCAGCAGGC------------ d.16.e.P.falciparum.A.fasta AAAUAGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.P.falciparum.S.fasta AAAUAGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.P.vivax.A.fasta AAAUAGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.P.vivax.O.fasta AAAUAGCU----ACCACAUCUAAGGAA-GGCAGCAUAUAGCA-------- d.16.e.P.vivax.S.fasta AAAUAGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.E.histolytica.fasta AGAUGGCU----ACCACUUCUAAGGAA-GGCAGCAGGC------------ d.16.e.I.hoferi.fasta AAACGGCU----ACCACUUCCAAGGAA-GGCAGCAGGC------------ d.16.e.Dermocystidium.sp.fasta AAACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.S.destruens.fasta AAACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.A.unguiculata.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.D.grandis.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.A.macrogynus.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.B.emersonii.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.C.albicans.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.S.cerevisiae.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.N.crassa.fasta AAACGGCU----ACUACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.P.anserina.fasta AAACGGCU----ACUACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.C.immitis.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.L.major.fasta AAAUAGCU----ACCACUUCUACGGAG-GGCAGCAGGC------------ d.16.e.T.cruzi.fasta AAAUAGCU----ACCACUUCUACGGAG-GGCAGCAGGC------------ d.16.e.T.brucei.fasta AAAUAGCU----ACCACUUCUACGGAG-GGCAGCAGGC------------ d.16.e.P.carinii.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.C.neoformans.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.Fungus.sp.QPX.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.U.maydis.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.M.leidyi.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.T.cystophora.fasta AAAUGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.M.prolifera.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.P.haeckeli.fasta AAACGGCU----ACCACUUCCAAGGAA-GGUAGCAGGC------------ d.16.e.E.rotunda.fasta AAAUGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.P.chromatophora.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.A.majus.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.S.indicum.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.D.grandiflora.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.Pla.lanceolata.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.N.tabacum.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.A.thaliana.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.S.alba.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.S.tuberosum.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.F.x.ananassa.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.G.max.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.O.sativa.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.Z.mays.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.A.verticilliflorum.fast AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.G.spirotaenia.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.Staurastrum.sp.M752.fas AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.C.paradoxa.fasta AGAUGGCG----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.G.nostochinearum.fasta AGAUGGCG----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.G.wittrockiana.fasta AGAUGGCG----ACCACAUCCAAGGAC-GGCAGCAGGG------------ d.16.e.C.luteoviridis.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.O.longa.fasta AAACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.P.weissei.fasta AAACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.C.citrina.fasta AAACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.G.steinii.fasta AAACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.Ple.lanceolata.fasta AAACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.O.quadricornutus.fasta AAACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.S.lemnae.fasta AAACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.S.mytilus.fasta AAACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.E.mobilis.fasta AAACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.O.granulifera.1.fasta AAACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.O.granulifera.2.fasta AAACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.U.gallina.fasta AAACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.U.pisces.fasta AAACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.P.lepisma.fasta AAACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.U.grandis.fasta AAACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.B.coli.fasta AAACGGCU----ACUACAUCUACGGAA-GGCAGCAGGC------------ d.16.e.E.aediculatus.fasta AAACGGCU----ACCACUUCUACGGAA-GGCAGCAGGC------------ d.16.e.T.thermophila.fasta AAACGGCU----ACUACAACUACGGUUCGGCAGCAGGG------------ d.16.e.Bangia.sp.NWT.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.Bangia.sp.VIS7.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.E.carnea.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.R.parvula.fasta AAACGGCU----ACCACAUCCAAGGAA-G-CAGCAGGC------------ d.16.e.C.coeruleus.fasta AAACGGCU----ACCACAUCCAAGGAA-G-CAGCAGGC------------ d.16.e.P.aerugineum.1.fasta AAAUGGCU----ACCACAUCCAAGGAA-GGYAGCAGGC------------ d.16.e.R.maculata.fasta AAACGGCU----ACCACAUCCAUGGAA-GGCAGCAGGC------------ d.16.e.A.ambigua.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.A.baicalensis.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.S.nipponica.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.C.radiatus.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.C.criophilum.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.A.capitellata.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.S.pupula.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.T.antarctica.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.E.triangulatum.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.A.bongranii.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.Pseudogomphonema.sp.fas AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.D.tenue.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.G.marina.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.Thalassionema.sp.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.R.belgicae.fasta AGACGGCU----ACCACAUSCAAGGAA-GGCAGCAGGU------------ d.16.e.Undatella.sp.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.C.belgica.fasta AGAUGGCC----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.O.sinensis.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.D.brightwellii.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.L.undulatum.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.T.eccentrica.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.T.pseudonana.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.S.costatum.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.P.laevis.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.L.borealis.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.P.pseudodenticulata.fas AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.B.mediterranea.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.B.pacifica.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.L.minuta.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.L.danicus.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.Chaetoceros.sp.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.A.invadans.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.L.giganteum.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.M.varians.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.B.hominis.fasta AGAUGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.P.marinus.fasta AAACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.T.gondii.fasta AAACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.A.fundyense.fasta AAAUGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.B.bigemina.fasta AAACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.B.canis.fasta AGACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.Babesia.sp.OKD.fasta AAACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.B.microti.1.fasta AAACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.B.microti.2.fasta AAACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.B.microti.3.fasta AAACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.B.microti.4.fasta AAACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.B.microti.5.fasta AAACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.B.rodhaini.fasta AAACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.B.gibsoni.fasta AAACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.B.bovis.fasta AGACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.J.libera.fasta AAACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.R.americana.fasta AGACGGCU----ACCACAUCUAAGGAA-GGCAGCAGGC------------ d.16.e.B.ostreae.fasta AAACGGCU----ACCACAUCCACGGGA-GGCAGCAGGU------------ d.16.e.A.dasyae.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.A.hermannii.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.N.helminthoides.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.B.gelatinosum.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.N.tortuosa.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.T.hispida.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.T.violacea.4.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.T.violacea.1.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.T.violacea.2.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.N.shawii.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.B.investiens.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.B.macrosporum.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.A.plicata.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.C.officinalis.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.R.carriebowensis.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.B.hamifera.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.G.vagum.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.C.crispus.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.H.plana.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.R.leptophylla.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.P.pulvinata.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.C.rubrum.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.Gracilariopsis.sp.fasta AGACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.B.moritziana.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.H.rubra.fasta AAACGGCU----ACCACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.D.grisea.fasta AAACGGCG----GCUACAUCCAAGGAA-GGCAGCAGGC------------ d.16.e.N.fowleri.fasta AGAUCGCU----ACCACAUCUAAGGAC-GGCAGCAGGC------------ d.16.e.N.gruberi.fasta AAAUCGCU----ACCACAUCUAAGGAC-GGCAGCAGGC------------ a.16.e.Hexamita.sp.fasta AGACGGCU----CAUAGUUCUAAGGGA-GGCAGCAGGC------------ d.16.e.T.foetus.fasta AGAUAGCG----ACUAUAUCCACGGGU-AGCAGCAGGC------------ d.16.e.A.khaliulini.fasta AGAUGGCU----GCCACGUCCAAGGAC-GGCAGCAGGC------------ d.16.e.E.aedis.fasta AGAUGGCU----GCCACGUCCAAGGAC-GGCAGCAGGC------------ d.16.e.A.connecticus.fasta AGAUGGCU----GCCACGUCCAAGGAC-GGCAGCAGGC------------ d.16.e.I.barri.fasta AGAUGGCU----CCCACGUCCAAGGAC-GGCAGCAGGC------------ d.16.e.A.ferocious.fasta AGAUGGCU----GCCACGUCCAAGGAC-GGCAGCAGGC------------ d.16.e.Amblyospora.sp.fasta AGAUGGCU----ACCACGUCCAAGGAC-GGCAGCAGGC------------ d.16.e.C.lunata.fasta AGAUGGCU----ACUACGUCCAAGGAU-GGCAGCAGGC------------ d.16.e.P.anophelis.fasta AGAUGGCU----GCCACGUCCAAGGAC-GGCAGCAGGC------------ d.16.e.Hazardia.sp.fasta AGAUGGCU----GCCACGUCCAAGGAC-GGCAGCAGGC------------ d.16.e.H.milleri.fasta AGAUGGCU----GCCACGUCCAAGGAC-GGCAGCAGGC------------ d.16.e.P.simulii.fasta AGAUGGCU----GCUACGUCCAAGGAU-GGCAGCAGGC------------ d.16.e.W.palustris.fasta AGAUGGCU----GCUACGUCCAAGGAU-GGCAGCAGGC------------ d.16.e.Nosema.sp.03.fasta AGAUUGCU----ACUAAGUCUAAGGAU-UGCAGCAGGG------------ d.16.e.Nosema.sp.05.fasta AGAUUGCU----ACUAAGUCUAAGGAU-UGCAGCAGGG------------ d.16.e.Endoreticulatus.sp.fast AGAUUGCU----ACUAAGUCUAAGGAU-UGCAGCAAGG------------ d.16.e.Nosema.sp.02.fasta AGAUUACU----ACUAAGUCUAAGGAU-UGCAGCAGGG------------ d.16.e.N.spodopterae.fasta AGAUUGCU----ACUAAGUCUAAGGAU-UGCAGCAGGG------------ d.16.e.N.trichoplusiae.fasta AGAUUGCU----ACUAAGUCUAAGGAU-UGCAGCAGGG------------ d.16.e.N.bombycis.27.fasta AGAUUGCU----ACUAAGUCUAAGGAU-UGCAGCAGGG------------ d.16.e.N.bombycis.02.fasta AGAUUGCU----ACUAAGUCUAAGGAU-UGCAGCAGGG------------ d.16.e.V.imperfecta.fasta AGAUUGCU----ACUAAGUCUAAGGAU-UGCAGCAGGG------------ d.16.e.N.furnacalis.fasta AGAUUGCU----ACUAAGUCUAAGGAU-UGCAGCAGGG------------ d.16.e.Microsporidium57864.fas AGACGGCU----ACUAAGUCUAAGGAU-UGCAGCAGGG------------ d.16.e.Vairimorpha.sp.C21.fast AGACGGCU----ACUAAGUCUAAGGAU-UGCAGCAGGG------------ d.16.e.N.oulemae.fasta AGACGGCU----ACUAAGUCUAAGGAU-UGCAGCAGGG------------ d.16.e.N.necatrix.fasta AGACGGCU----ACUAAGUCUAAGGAU-UGCAGCAGGG------------ d.16.e.V.necatrix.fasta AGACGGCU----ACUAAGUCUAAGGAU-UGCAGCAGGG------------ d.16.e.N.apis.fasta AGACGGCU----ACUAAGUCUAAGGAU-UGCAGCAGGG------------ d.16.e.O.occidentalis.fasta AGACGGCU----ACUAAGUCUAAGGAU-UGCAGCAGGG------------ d.16.e.Microsporidium.sp.DP119 AGAUGGCU----CCCACGUCCAAGGAC-GGCAGCAGGC------------ d.16.e.V.corneae.fasta AGAUUGCU----CCCACGUCCAAGGAC-GGCAGCAGGC------------ d.16.e.A.michaelis.fasta AGAUGGCG----ACCAGUUCUAAGGAG-UGCAGCAGGC------------ d.16.e.T.contejeani.fasta AGAUGGCU----ACUAGGUCUAAGGAG-AGCAGCAGGC------------ d.16.e.E.hellem.fasta AGAUGGCU----ACUACGUCCAAGGAU-GGCAGCAGGC------------ d.16.e.Encephalitozoon.sp.fast AGAUGGCU----ACUACGUCCAAGGAU-GGCAGCAGGC------------ d.16.e.E.cuniculi.fasta AGAUGGCU----ACUACGUCCAAGGAU-GGCAGCAGGC------------ d.16.e.O.colligata.fasta AGAUGGCU----ACUACGUCCAAGGAU-GGCAGCAGGC------------ d.16.e.E.salmonis.fasta AGAUGGCU----CCCACGUCCAAGGAU-GGCAGCAGGC------------ d.16.e.N.salmonis.fasta AGAUGGCU----CCCACGUCCAAGGAU-GGCAGCAGGC------------ d.16.e.Enterocytozoonidae.sp.f AGAUGGCU----CCCACGUCCAAGGAU-GGCAGCAGGC------------ d.16.e.E.bieneusi.fasta AGAUGGCU----CCCACGUCCAAGGAC-GGCAGCAGGC------------ d.16.e.B.algerae.fasta AGACAGCU----UUCACGUCCAAGGAU-GGCAGCAGGC------------ d.16.e.T.solenopsae.fasta AAACCGCU----UUCACGUCCAAGGAU-GGCAGCAGGC------------ d.16.e.V.acridophagus.fasta AAACCGCU----UUCACGUCCAAGGAU-GGCAGCAGGC------------ d.16.e.Bacillidium.sp.fasta AAAUAGCU----ACCACGUCUAAGGAU-GGCAGCAGGC------------ d.16.e.P.cristatellae.fasta AAAUAGCU----CCCACGUCCAAGGAC-GGCAGCAGGC------------ d.16.e.Pleistophora.sp.fasta AGAUAGCU----CCCACGUCCAAGGAC-GGCAGCAGGC------------ d.16.e.O.operophterae.fasta AGAUGGCU----CCCACGUCCAAGGAC-GGCAGCAGGC------------ d.16.e.F.magnivora.fasta AAACGGCU----ACCAGGUCUAAGGAC-AGCAGCAGGC------------ d.16.e.G.atherinae.fasta AGACGGCU----ACCAGGUCCAAGGAC-AGCAGCAGGC------------ d.16.e.Ichthyosporidium.sp.fas AGACGGCU----ACCGGGUCCAAGGAC-AACAGCAGGC------------ d.16.e.L.acerinae.fasta AGACGGCU----ACCAGGUCCAAGGAC-AGCAGCAGGC------------ d.16.e.H.anguillarum.fasta AGACGGCU----ACCAGGUCCAAGGAC-AGCAGCAGGC------------ d.16.e.P.mirandellae.fasta AGAUGGCU----ACCAGGUCCAAGGAC-AGCAGCAGGC------------ d.16.e.T.hominis.fasta AGACGGCU----ACCAGGUCCAAGGAC-AGCAGCAGGC------------ d.16.e.V.culicis.fasta AGACGGCU----ACCAGGUCCAAGGAC-AGCAGCAGGC------------ d.16.e.P.hippoglossoideos.fast AGACGGCU----ACCAGGUCCAAGGAC-AGCAGCAGGC------------ d.16.e.Microgemma.sp.fasta AGACGGCU----ACCAGGUCCAAGGAC-AGCAGCAGGC------------ d.16.e.S.lophii.fasta AGACGGCU----ACCAGGUCCAAGGAC-AGCAGCAGGC------------ d.16.e.Pleistophora.sp.LS.fast AGAUGGCU----ACCAGGUCUAAGGAC-UGCAGCAGGC------------ d.16.e.D.gammarellum.fasta AGAUGGCU----ACCAGGACCAAGGUC-AGCAGCAGGC------------ d.16.e.M.prosopium.fasta AGAUGGCU----ACCAGGUCCAAGGAU-AGCAGCAGGC------------ d.16.e.A.scoticae.fasta AAACAGCU----CCCACGUCCAAGGAC-GGCAGCAGGC------------ d.16.e.P.whitei.fasta AAACAGCU----CCCACGUCCAAGGAC-GGCAGCAGGC------------ a.16.c.C.coccineum.fasta ----UAAUAUA--------------U--AGUGGCGC-ACGGGUGCAUAAC a.16.c.C.ruber.fasta ----UGGUCUU--------------UUAAGUGGCGA-ACGGGUGAGUAAC d.16.c.N.tabacum.fasta ----UGGUGUU--------------UCCAGUGGCGG-ACGGGUGAGUAAC d.16.c.S.oleracea.fasta ----UGGUGUU--------------UCCAGUGGCGG-ACGGGUGAGUAAC d.16.c.Z.mays.fasta ----UGGUGUU--------------UCCAGUGGCGA-ACGGGUGAGUAAC d.16.c.M.polymorpha.fasta CUAGUGGUGUU--------------UCCAGUGGCGG-ACGGGUGAGUAAC d.16.c.R.communis.fasta ----UGGUGUU--------------UCCAGUGGCGG-ACGGGUGAGUAAC d.16.c.C.vulgaris.fasta GCUUGCCAGAU---UG-------CGAUGAGUGGCGG-ACGGGUGAGUAAC d.16.c.P.wickerhamii.fasta UCUUUCGAGCUAAAUA-------UACUGAGUAGCGG-ACGGGUGAGUAAC d.16.c.P.minor.fasta GCUCUAGCGCAAGUUA-------GAGUGGGUGGCGG-ACGGGUGAGGAAC d.16.c.N.olivacea.fasta CUUUCGAGGGUCGGCGCC--AUCUGCAUAGUGGCGA-ACGGGUGAGGAAC d.16.c.P.parkeae.fasta UCUUCGGAGAAGAAU----------CAUAGUGGCGG-ACGGGUGAGUAAC d.16.c.C.reinhardtii.fasta -----GCAAUU------------UGUGUAGUGGCGA-ACGGGUGCGUAAC b.16.m.A.castellanii.fasta -----------------------------------A-AAAG-UAAAU-UU d.16.c.P.thurberi.fasta -----------------------------------U-UUAU-CUAACACU b.16.m.C.crispus.fasta -----------------------------------U-UUUUAUUAGUUAU d.16.c.T.gondii.fasta -----------------------------------U-AUAUCAUAGUGUA b.16.m.N.crassa.fasta CCUAAGAAAGGGGUUUCA--UCGUGGCUUAAGCUAA-GGGGUUUAUUGUG b.16.m.P.anserina.fasta AGUUGCAGUAAAGUUAUU--CUUUCCUUUCUGUAAA-ACUGGUUAUUAAG b.16.m.P.chrysogenum.fasta -----------AGUUU------------------------AAUUAUUAU- b.16.m.E.nidulans.fasta ----------------------------------------AGUUAUUAAA b.16.m.S.cerevisiae.fasta AAGAUAAUAAAUAUGUGG--UGUAAACGUGA-GUAA-UUUUAUUAGGAAU b.16.m.W.saturnus.m.fasta UGAUAUAUAAUUAUAUAA--UAUUAAUAUUAUAUAA-UUCAAAUAAUAAU b.16.m.P.minor.fasta -------------------------------------------------- d.16.c.P.falciparum.fasta AGAAAUAUACAUUACACA--UGCAAAUUAAUGAUAA-UAUCAUAGUGUAU d.16.c.B.bovis.fasta AUUUUUAAUAUUAUUUAA---AUUAGUGUAGAGGUG-AGUAAUGAAUAGA b.16.m.T.pyriformis.fasta AGUUUUAUAUAUAUUAGA--UAACAAUUAAAUCUAA-AUGUAUAGCGUCA d.16.m.S.sinuspaulianus.fasta GUCUUCAUAGAUAGAAGA--UAUUAUUCUAAGUAAA-UUUUUUAAAUUUA b.16.m.P.tetraurelia.fasta UUCUUUGCUUAAAAUGCA--AAGAUCUAGUUUUAAA-AUAGCGUAUUGGU b.16.m.D.discoideum.fasta ----------------------------------AA-AUAGAGUAGCAAA d.16.m.P.polycephalum.fasta CGUGGCGUACGAGCGACA--AGGGCAAAGAUAGAAA-AUACAUCAGUCAA b.16.m.P.littoralis.fasta ----------------------------CAUGGCGU-ACGGGUGAGUAAU b.16.m.P.wickerhamii.fasta ------AAAUAUAGAAAA--AGUAGCGAACGGGUGA-GUAACGCGUGAGA d.16.c.H.africana.fasta ---------------------------AACAACUAU-UUCUAGUAGCGAA d.16.c.C.fragile.fasta AAAUUUGUAGAAAUUUA------AUAUUAGUGGCGA-ACGGGUGAGUAAC d.16.c.C.sertularioides.fasta GGGGCUGU---------------UUAUGCGUGGCGA-ACGGGUGAGUAUC d.16.c.C.humicola.fasta UUACGGCUAUUAUUUAGU--GGCGGACGGGUGCGUA-ACACGUAAGAACC d.16.c.P.uvella.fasta CGACCUUCUUGUAUAAGU--GGCGGACGGGUGAGUA-ACACGUGAGAAUC a.16.c.G.nostochinearum.fasta UCUU------------------------AGUGGCGG-ACGGGUGAGUAAC a.16.c.G.wittrockiana.fasta UUUU------------------------AGUGGCGA-ACGGGUGAGUAAC d.16.c.C.paradoxa.fasta UCUU------------------------AGUGGCGG-ACGGGUGAGUAAC d.16.y.C.paradoxa.fasta UCUU------------------------AGUGGCGG-ACGGGUGAGUAAC d.16.c.Cryptomonas.sp.fasta CUUU------------------------AGUGGCGG-ACGGGUGAGUAAC d.16.c.P.palmata.fasta CCUU------------------------AGUGGCGG-ACGGGUGAGUAAC d.16.c.H.akashiwo.fasta UUCUUAAAAAACUGAA------------AGUGGCGG-ACGGGUGAGUAAC d.16.c.S.pseudocostatum.fasta CUCU------------------------AGUGGCGG-ACGGGUGAGUAAC d.16.c.P.littoralis.fasta CUUU------------------------AGUGGCGG-ACGGGUGAGUAAC d.16.c.C.caldarium.fasta UUCU------------------------AGUGGCGG-ACGGGUGAGUAAC a.16.c.E.huxleyi.fasta CUCU------------------------AGUGGCGA-ACGGGUGAGUAAU d.16.c.E.gracilis.fasta AUUU------------------------AGUGGCGG-ACGGGUGAGUAAU d.16.b.Anabaena.sp.fasta -----------------------AGAU-AGUGGCGG-ACGGGUGAGUAAC d.16.b.Chlorogloeopsis.PCC7518 -----------------------AGAC-AGUGGCGG-ACGGGUGAGUAAC d.16.b.Synechococcus.sp.fasta -----------------------AGCU-AGUGGCGG-ACGGGUGAGUAAC d.16.b.Synechocystis.PCC6803.G -----------------------AACUUAGUGGCGG-ACGGGUGAGUAAC d.16.b.O.agardhii.fasta -----------------------GAUUUAGUGGCGG-ACGGGUGAGUAAC d.16.b.Pleurocapsa.7516.fasta ------------------------ACUUAGUGGCGG-ACGGGUGAGUAAC d.16.b.M.aeruginosa.fasta -----------------------AUUCUAGUGGCGG-ACGGGUGAGUAAC b.16.m.C.reinhardtii.fasta AAGGCCACGAGUGC------GUAA--UACGCGA-GU-UUAAAUUUAUUAU d.16.m.C.eugametos.fasta AGCGU-ACGGGUGA------GUAGAUUAUGCGA-GU-UUAAAUAUAC--- b.16.m.M.senile.fasta AGUAUGUCUAUCUG------AUGG--UCAAAAG-AU-CUAAGGAUAGCUC d.16.b.S.pneumoniae.fasta NNNNNNNNNNNNNN------NNNNNNNNNGAAC-GG-GUGAGUAACGCGU d.16.b.S.pyogenes.fasta NNNNNNNNNNNNNN------NNNNNNNNNGAAC-GG-GUGAGUNACGCGU d.16.b.B.anthracis.fasta AAGAGCUUGCUCUU------AUGAAGUUAGCGGCGG-ACGGGUGAGUAAC d.16.b.B.cereus.1.fasta AAGAGCUUGCUCUU------AUGAAGUUAGCGGCGG-ACGGGUGAGUAAC d.16.b.E.faecalis.fasta CUUGCACUCAAUUG------GAAAGAGGAGUGGCGG-ACGGGUGAGUAAC d.16.b.E.faecium2.fasta CUUGCUCCACCGGA------AAAAGAGGAGUGGCGA-ACGGGUGAGUAAC d.16.b.L.monocytogenes.fasta CUUGCUCUUCC-----------AAAGUUAGUGGCGG-ACGGGUGAGUAAC d.16.b.B.subtilis.fasta GGA-GCUUGCUCC-------C-GAUGUUAGCGGCGG-ACGGGUGAGUAAC d.16.b.B.subtilis.GEN.fasta GGA-GCUUGCUCC-------CUGAUGUUAGCGGCGG-ACGGGUGAGUAAC d.16.b.B.halodurans.fasta GGA-GCUUGCUCC-------UAGAGGUUAGCGGCGA-ACGGGUGAGUAAC d.16.b.S.aureus.fasta AGAAGCUUGCUUCU------CUGAUGUUAGCGGCGG-ACGGGUGAGUAAC d.16.b.S.aureus.GEN.fasta AGAAGCUUGCUUCU------CUGAUGUUAGCGGCGG-ACGGGUGAGUAAC d.16.b.L.lactis.GEN.fasta GGUACUUGUACCGA------CUGGA-UGAGCAGCGA-ACGGGUGAGUAAC d.16.b.S.pyogenes.GEN.fasta GGUGCUUGCACCGG------UUCAA-GGAGUUGCGA-ACGGGUGAGUAAC d.16.b.L.acidophilus.fasta CACUUCGGUGAUGACGUU-GGGAACGCUAGCGGCGG-AUGGGUGAGUAAC d.16.b.M.capricolum.fasta GGGUGCUUGCACCUC-------------AGUGGCGA-ACGGGUGAGUAAC d.16.b.M.mycoides.fasta AGGUGCUUGCACCUC-------------AGUGGCGA-ACGGGUGAGUAAC d.16.b.E.rhusiopathiae.fasta AGGAGCUUGCUCCUUG----GAA--CUUAGUGGCGA-ACGGGUGAGUAAU d.16.b.C.innocuum.fasta GGAAGCUUGCUUCCAA----AAAGACUUAGUGGCGA-ACGGGUGAGUAAC d.16.b.M.genitalium.fasta AUACU---------------------UUAGAGGCGA-ACGGGUGAGUAAC d.16.b.M.pneumoniae.GEN.fasta AUACU---------------------UUAGAGGCGA-ACGGGUGAGUAAC d.16.b.M.pneumoniae.fasta AUACU---------------------UUAGAGGCGA-ACGGGUGAGUAAC d.16.b.M.gallisepticum.fasta AUACA---------------------UUAGAGGCGA-ACGGGUGAGUAAC d.16.b.U.urealyticum.fasta AGGC----------------------UUAGUGGUGA-ACGGGUGAGUAAC d.16.b.U.urealyticum.GEN.fasta AGGC----------------------UUAGUGGUGA-ACGGGUGAGUAAC d.16.b.M.hyopneumoniae.fasta AGUUCGCUAAAAUAU-----------UUAGUAGCAA-AUGGGUGAGUAAC d.16.b.F.necrophorum.fasta -----------CUU-------CGACUUGGGUGGAGC-ACGGGUGAGUAAC d.16.b.F.nucleatum.fasta GGGUUUUUUAACUU-------CGAUUUGGGUGGCGG-ACGGGUGAGUAAC d.16.b.S.moniliformis.fasta AAGCUUGCUUACAU-------AGACU-ACAUGGUGG-ACUGGUGAGUAAC d.16.b.C.botulinum.F.fasta ----CUUCGGG--------AAGUGGAUUAGCGGCGG-ACGGGUGAGUAAC d.16.b.C.tetani.fasta ----CUUCGGG--------AAGUGGAUUAGCGGCGG-ACGGGUGAGUAAC d.16.b.C.perfringens.fasta ----CUUCGGG--------AAACGGAUUAGCGGCGGGACGGGUGAGUAAC d.16.b.C.difficile.fasta ----CUUCGG-------------UAAAGAGCGGCGG-ACGGGUGAGUAAC d.16.b.E.brachy.fasta GAUUCUUCGGAUGAAAUUUAAAAUGGAAAGCGGCGG-ACGGGUGAGUAAC d.16.b.Epulopiscium.sp.fasta ----CUUCGG-------------UAGUUAGUGGCGG-ACGGGUGAGUAAC d.16.b.H.chlorum.fasta ----UUUCGAUG-------GAAGCUCUUAGUGGCGG-ACGGGUGAGUAAC b.16.m.G.max.fasta -------------UUUUCGGGGAG--CU--GGGCAG-AAGGAAAAGAGGC b.16.m.O.berteriana.fasta -------------UUUUCGGGGAG--CU--GGGCAG-AAGGAAAAGAGGC b.16.m.S.cereale.fasta -------------UUUUCGGGGAG--CU--GGGCAG-AAGGAAAAGAGGC b.16.m.T.aestivum.fasta -------------UUUUCGGGGAG--CU--GGGCAG-AAGGAAAAGAGGC d.16.m.Z.mays.fasta -------------UUUUCGGGGAG--CU--GGGCAG-AAGGAAAAGAGGC b.16.m.M.polymorpha.fasta -------------UUUUCGUCCUU--AC--GUGUUG-AAGGUUG---CAU b.16.m.N.olivacea.fasta -------------CUGACAAGAAG--AG--UGGCAA-ACGGGUGAGUAAC d.16.b.G.liquefaciens.fasta -------------CUUUCGGGGUU--AG--UGGCGG-ACGGGUGAGUAAC d.16.b.B.japonicum.fasta ------------CGUAGCAAUACGUCAG--CGGCAG-ACGGGUGAGUAAC d.16.b.R.acidophilus.fasta ------------CAUAGCAAUAUGUCAG--UGGCAG-ACGGGUGAGGAAC d.16.b.A.caulinodans.fasta ------------CCCAGCAAUGGG--AG--CGGCAG-ACGGGUGAGUAAC d.16.b.B.quintana.fasta ------------UCUUUUAGAGUG--AG--CGGCAA-ACGGGUGAGUAAC d.16.b.M.loti.fasta -------------CCCGCAAGGGG--AG--CGGCAG-ACGGGUGAGUAAC d.16.b.A.tumefaciens.fasta -------------CCCGCAAGGGG--AG--UGGCAG-ACGGGUGAGUAAC d.16.b.B.bacilliformis.fasta ------------UCUUUUUGAGUG--AG--CGGCAG-ACGGGUGAGUAAC d.16.b.B.henselae.fasta ------------UCUUUUAGAGUG--AG--CGGCAA-ACGGGUGAGUAAC d.16.b.B.melitensis.fasta -------------CCCGCAAGGGG--AG--CGGCAG-ACGGGUGAGUAAC d.16.b.R.orientis.fasta --------------CCUUCGGGUG--AG--UGGCAG-ACGGGUGAGUAAC d.16.b.Methylobacterium.sp.fas ------------CCCUUUGGGGUC--AG--CGGCGG-ACGGGUGAGUAAC d.16.b.R.bellii.fasta GGGGC------UUGCUCCAAUUAGUUAG--UGGCAG-ACGGGUGAGUAAC d.16.b.R.felis.URRWXCal2.fasta GGGGC------UUGCUCCAAUUAGUUAG--UGGCAG-ACGGGUGAGUAAC d.16.b.R.prowazekii.fasta AGAGC------UCGCUUUAGUUAAUUAG--UGGCAG-ACGGGUGAGUAAC d.16.b.R.prowazekii.GEN.fasta AGAGC------UCGCUUUAGUUAAUUAG--UGGCAG-ACGGGUGAGUAAC d.16.b.R.rickettsii.fasta GGGGC------UUGCUCCAAUUAGUUAG--UGGCAG-ACGGGUGAGUAAC d.16.b.A.calcoaceticus.fasta UGCUU------CGG-UA--ACUGACUAG--CGGCGG-ACGGGUGAGUAAU d.16.b.P.pacificensis.fasta AGCUU----GCUAU-CA--GGCGUCGAG--CGGCGG-ACGGGUGAGUAAU d.16.b.C.marismortui.fasta AGCUU----GCUGG-AC--GCUGACGAG--CGGCGG-ACGGGUGAGUAAU d.16.b.H.halodenitrificans.fas AGCUU----GCUUC-CA--GGCGUCGAG--CGGCGG-ACGGGUGAGUAAU d.16.b.P.aeruginosa.fasta AGCUU----GCUCC-UG--GAU--UCAG--CGGCGG-ACGGGUGAGUAAU d.16.b.P.aeruginosa.GEN.fasta AGCUU----GCUCC-UG--GAU--UCAG--CGGCGG-ACGGGUGAGUAAU d.16.b.Pseudomonas.sp.fasta AGCUU----GCUCC-CG--GAU--UCAG--CGGCGG-ACGGGUGAGUAAU d.16.b.P.putida.fasta AGCUU----GCUCU-UC--GAU--UCAG--CGGCGG-ACGGGUGAGUAAU d.16.b.C.burnetii.fasta GNCUU----NCUC--CU--GGCGGCGAGAGUGGCGG-ACGGGUGAGUAAU d.16.b.M.capsulatus.fasta GGCCU----UCGG--GC--GCUGACGAG--UGGCGG-ACGGGUGAGUAAU d.16.b.L.pneumophila.1.fasta AGCUU----GCUAGACA--GAUGGCGAG--UGGCGA-ACGGGUGAGUAAC d.16.b.L.pneumophila.2.fasta AGCUU----GCUAGACA--GAUGGCGAG--UGGCGA-ACGGGUGAGUAAC d.16.b.A.vinosum.fasta GGCUU----CGGC--CU--GA-GUAGAG--UGGCGG-ACGGGUGAGUAAC d.16.b.Beggiatoa.sp.fasta AGCAA----UACC-----------UUAG--UGGCGG-ACGGGUGAGUAAU d.16.b.A.hydrophila.fasta AGCUU----GCUACUUUU-GCCGGCGAG--CGGCGG-ACGGGUGAGUAAU d.16.b.S.putrefaciens.fasta AGUUU----ACUUCCUGA-GGUGGCGAG--CGGCGG-ACGGGUGAGUAAU d.16.b.C.freundii.fasta AGCUU----GCUCCUUG--GGUGACGAG--UGGCGG-ACGGGUGAGUAAU d.16.b.S.dysenteriae.1.fasta AGCUU----GCUGCUUU--GCUGACGAG--UGGCGG-ACGGGUGAGUAAU d.16.b.K.pneumoniae.fasta AGCUU----GCN-CUCG--GGUGACGAG--CGGCGG-ACGGGUGAGUAAU d.16.b.P.shigelloides.fasta AGCUU----GCUCCUUG--GGUGACGAG--CGGCGG-ACGGGUGAGUAAU d.16.b.Y.pestis.fasta AGUUU----ACUACUUU--GCCGGCGAG--CGGCGG-ACGGGUGAGUAAU d.16.b.Y.pseudotuberculosis.fa AGUUU----ACUACUUU--GCCGGCGAG--CGGCGG-ACGGGUGAGUAAU d.16.b.S.dysenteriae.2.fasta AGCUU----GCUG-UUU--GCUGACGAG--UGGCGG-ACGGGUGAGUAAU d.16.b.E.coli.0157G.GEN.fasta AGCUU----GCUUCUUU--GCUGACGAG--UGGCGG-ACGGGUGAGUAAU d.16.b.E.coli.EDL.GEN.fasta AGCUU----GCUUCUUU--GCUGACGAG--UGGCGG-ACGGGUGAGUAAU d.16.b.E.coli.fasta AGCUU----GCUUCUUU--GCUGACGAG--UGGCGG-ACGGGUGAGUAAU d.16.b.E.coli.K12.GEN.fasta AGCUU----GCUUCUUU--GCUGACGAG--UGGCGG-ACGGGUGAGUAAU h.16.b.E.coli.hlxnum.fasta AGCUU----GCUUCUUU--GCUGACGAG--UGGCGG-ACGGGUGAGUAAU m.16.b.E.coli.mhg.fasta AGCUU----GCUUCUUU--GCUGACGAG--UGGCGG-ACGGGUGAGUAAU s.16.b.E.coli.schem.fasta AGCUU----GCUUCUUU--GCUGACGAG--UGGCGG-ACGGGUGAGUAAU d.16.b.S.typhimurium.fasta AGCUU----GCN-CUUC--GCUNNNNAG--UGGCGG-ACGGGUGAGUAAU d.16.b.S.marcescens.fasta AGCUU----GCUCCCUG--GGUGACGAG--CGGCGG-ACGGGUGAGUAAU d.16.b.E.tarda.fasta NNNNN----NNNNNNNN--NNNNACGAG--CGGCGG-ACGGGUGAGUAAU d.16.b.P.vulgaris.fasta AGCUU----GCUUUCUU--GCUGACGAG--CGGCGG-ACGGGUGAGUAAU d.16.b.V.cholerae4.fasta AACUU----GUUCNUUG--GGUGGCGAG--CGGCGG-ACGGGUGAGUAAU d.16.b.V.cholerae5.fasta AACUU----GUUCCUUG--GGUGGCGAG--CGGCGG-ACGGGUGAGUAAU d.16.b.V.cholerae2.fasta AACUU----GUUCCUUG--GGUGGCGAG--CGGCGG-ACGGGUGAGUAAU d.16.b.V.cholerae6.fasta AACUU----GUUCCUUG--GGUGGCGAG--CGGCGG-ACGGGUGAGUAAU d.16.b.V.cholerae.fasta AACUU----GUUCCUUG--GGUGGCGAG--CGGCGG-ACGGGUGAGUAAU d.16.b.V.cholerae.GEN.fasta AACUU----GUUCCUUG--GGUGGCGAG--CGGCGG-ACGGGUGAGUAAU d.16.b.V.parahaemolyticus.fast AACUUCGGGGAACGAUAACGGCGUCGAG--CGGCGG-ACGGGUGAGUAAU d.16.b.H.influenzae7.fasta AGCUU----GCUUUCUU--GCUGACGAG--UGGCGG-ACGGGUGAGUAAU d.16.b.H.influenzae8.fasta AGCUU----GCUUUCUU--GCUGACGAG--UGGCGG-ACGGGUGAGUAAU d.16.b.H.influenzae6.fasta AGCUU----GCUUUCUU--GCUGACGAG--UGGCGG-ACGGGUGAGUAAU d.16.b.H.influenz.fasta AGCUU----GCUUUCUU--GCUGACGAG--UGGCGG-ACGGGUGAGUAAU d.16.b.H.influenzae.fasta AGCUU----GCUUUCUU--GCUGACGAG--UGGCGG-ACGGGUGAGUAAU d.16.b.P.multocida.fasta AGCUU----GCUUUCUUU-GCUGACGAG--UGGCGG-ACGGGUGAGUAAU d.16.b.P.multocida.GEN.fasta AGCUU----GCUUUCUUU-GCUGACGAG--UGGCGG-ACGGGUGAGUAAU d.16.b.X.albilineans.fasta AGC-------AAUACCAUGGGUGGCGAG--UGGCGG-ACGGGUGAGGAAU d.16.b.X.campestris.fasta AGCUU-----GCUCUUAUGGGUGGCGAG--UGGCGG-ACGGGUGAGGAAU d.16.b.X.fastidiosa.GEN.fasta AGU-------AAUACCAUGGGUGGCGAG--UGGCGG-ACGGGUGAGGAAU d.16.b.D.nodosus.fasta AGC--------UUGCUAUGUA-ACCUAG--UGGCGG-ACGGGUGAGUAAU d.16.b.F.tularensis.fasta GGUCU------UAGGAU--GCUGACGAG--UGGCGG-ACGGGUGAGUAAC d.16.b.B.parapertussis.fasta -GCUU-----CGGCCU---NGUGGCGAG--UGGCGA-ACGGGUGAGUAAU d.16.b.B.pertussis.fasta -GCUU-----CGGCCU---NGUGGCGAG--UGGCGA-ACGGGUGAGUAAU d.16.b.B.bronchiseptica2.fasta -GCUU-----CGGCCU---GGUGGCGAG--UGGCGA-ACGGGUGAGUAAU d.16.b.u.proteobacterium.fasta -GCUU-----CGGCCU---GGCGGCGAG--UGGCGA-ACGGGUGAGUAAU d.16.b.B.mallei.fasta -GCUU-----CGGC-U---GGUGGCGAG--UGGCGA-ACGGGUGAGUAAU d.16.b.Burkholderia.sp.fasta -GAGU-----AAUCCU---GGUGUCGAG--UGGCGA-ACGGGUGAGUAAU d.16.b.N.meningitidis.MD58.GEN AGCUU-----GCUUCUCG-GGUGGCGAG--UGGCGA-ACGGGUGAGUAAC d.16.b.N.meningitidis.Z2491.GE AGCUU-----GCUUCUCG-GGUGGCGAG--UGGCGA-ACGGGUGAGUAAC d.16.b.N.gonorrhoeae.fasta AGCUU-----GCUUCUCG-GGUGGCGAG--UGGCGA-ACGGGUGAGUAAC d.16.b.C.testosteroni.fasta --CUU-----CGGAU----GCUGACGAG--UGGCGA-ACGGGUGAGUAAU d.16.b.D.desulfuricans.fasta GACUU-----CGGUCC-----UGAGUAAAGUGGCGC-ACGGGUGAGUAAC d.16.b.M.xanthus.fasta GGG-------CAACCC-----UUAGUAGAGCGGCGC-ACGGGUGCGUAAC d.16.b.D.thermophilus.fasta GGCUU-----CGGCCAG----UGAGUACACCGGCGG-ACGGGUGAGUAAC d.16.b.B.burgdorferi.fasta -AGCA-----A-------UACAUUCAG---UGGCGAA-CGGGUGAGUAAC d.16.b.B.burgdorferi.GEN.fasta -AGCA-----A-------UACAUUCAG---UGGCGAA-CGGGUGAGUAAC d.16.b.B.hermsii.fasta -AGCA-----A-------UACAUUCAG---UGGCGAA-CGGGUGAGUAAC d.16.b.S.aurantia.fasta -GGCA-----A-------CCCCAUGAGAA-UGGCGAA-CGGGUGAGUAAC d.16.b.T.pallidum.A.fasta -AGCG-----AAUUUUCGUUUCUCUAGAG-UGGCGGA-CUGGUGAGUAAC d.16.b.L.illini.fasta -UCGG-----G---------UGGCGAG---CGGCGAA-CGGGUGAGUAAC d.16.b.L.interrogans.fasta ----A-----A---------UACUCAG---CGGCGAA-CGGGUGAGUAAC d.16.b.C.trachomatis.GEN.fasta -GUUU-----CGACGA---UUGUUUAG---UGGCGGA-AGGGUUAGUAAU d.16.b.C.trachomatis.L2.fasta -GUUU-----CGGCAA---UUGUUUAG---UGGCGGA-AGGGUUAGUAAU d.16.b.C.muridarum.fasta -GCUU-----CGGUGA---UUGUUUAG---UGGCGGA-AGGGUUAGUAAU d.16.b.C.pneumoniae.AR39.fasta -ACUU-----CGGUUG---UUAUUUAG---UGGCGGA-AGGGUUAGUAGU d.16.b.C.pneumoniae.fasta -ACUU-----CGGUUG---UUAUUUAG---UGGCGGA-AGGGUUAGUAGU d.16.b.C.pneumoniae.J138.fasta -ACUU-----CGGUUG---UUAUUUAG---UGGCGGA-AGGGUUAGUAGU d.16.b.C.pneumoniae.CWL029.fas -ACUU-----CGGUUG---UUAUUUAG---UGGCGGA-AGGGUUAGUAGU d.16.b.C.psittaci.fasta -ACUU-----CGGUUG---UUAUUUAG---UGGCGGA-AGGGUUAGUAAU d.16.b.D.radiodurans.1.fasta --CUU-----CGG--------ACCGAG---UGGCGCA-CGGGUGAGUAAC d.16.b.D.radiodurans.GEN.fasta --CUU-----CGG--------ACCGAG---UGGCGCA-CGGGUGAGUAAC d.16.b.B.fragilis.fasta -AAGA-AAGCUUGCUUUCUUUGCUGGCGACCGGCGCA-CGGGUGAGUAAC d.16.b.P.gingivalis.fasta -AUCU-UAGCUUGCUAAGGUUGAUGGCGACCGGCGCA-CGGGUGCGUAAC d.16.b.C.vibrioforme.fasta -------------CUUCGGGUGCGAGUACUUGGCGCA-AGGGUGAGUAAG d.16.b.C.jejuni.fasta -UCU---AGCUUGCUAGAA--GUGGAUUAGUGGCGCA-CGGGUGAGUAAG d.16.b.C.jejuni.GEN.fasta -UUU---AGCUUGCUAGAA--GUGGAUUAGUGGCGCA-CGGGUGAGUAAG d.16.b.C.sputorum.fasta -UUUUGAAGCUUUAUAUUA--AUAAAGCGAAAAAAAAGCAAAGCAGUUAG d.16.b.H.pylori.26695.GEN.fast -UCU---AGCUUGCUAGAGU-GCUGAUUAGUGGCGCA-CGGGUGAGUAAC d.16.b.H.pylori.J99.GEN.fasta -UCU---AGCUUGCUAGAA--GUGGAUUAGUGGCGCA-CGGGUGAGUAAC d.16.b.H.pylori2.fasta -UCU---AGCUUGCUAGAGU-GCUGAUUAGUGGCGCA-CGGGUGAGUAAC d.16.b.A.capsulatum.fasta -CU-----------UCGGUCCUGAGUACAGUGGCGC-ACGGGUGAGUAAC d.16.b.H.foetida.fasta --C-----------CCG---CAAGGUGCA-UGGCAG-ACGGGUGAGUAAC d.16.b.A.globiformis.fasta -UG----------CUUGCACCGGGGAUUAGUGGCGA-ACGGGUGAGUAAC d.16.b.M.luteus.fasta -AG----------CUUGC-UGGGNGAUUAGUGGCGA-ACGGGUGAGUAAC d.16.b.Frankia.sp.fasta -GG----------CUC----------UCAGCGGCGA-ACGGGUGAGUAAC d.16.b.S.bottropensis.fasta -AC----------UUCGGU-GGGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.scabiei.fasta -AC----------UUCGGU-GGGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.neyagawaensis.fasta -CC----------UUCGGG-GUGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.diastatochromogenes.f -AC----------UUCGGU-GGGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.Streptomyces.sp.fasta -CU----------UUCGGG-GUGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.acidiscabies.fasta -CC----------UUCGGG-GUGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.griseus.fasta -CU----------UUCGGG-GUGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.ornatus.fasta -CU----------UUCGGG-GUGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.subrutilus.fasta -CC----------UUCGGG-GUGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.bikiniensis.fasta -CC----------UUCGGG-GUGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.galbus.fasta -AC----------UUCGGU-GGGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.hygroscopicus.fasta -AC----------UUCGGU-GGGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.lincolnensis.fasta -AC----------UUCGGU-GGGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.coelicolor.fasta -AC----------UUCGGU-GGGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.tendae.fasta -AC----------UUCGGU-GGGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.ambofaciens.fasta -AC----------UUCGGU-GGGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.eurythermus.fasta -CC----------UUCGGGAGGGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.nodosus.fasta -CC----------UUCGGG-GUGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.sampsonii.fasta -CU----------UUCGGGCGGGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.glaucescens.fasta -AC----------UUCGGU-GGGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.pseudogriseolus.fasta -AC----------UUCGGU-GGGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.caelestis.fasta -AC----------UUCGGU-GGGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.bluensis.fasta -UC----------UUCGGAGGCGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.espinosus.fasta -AC----------CUCGGU-GGGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.mashuensis.fasta -CC----------UUCGGGAGGGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.rimosus.fasta -CC----------UUCGGG-GUGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.limosus.fasta -CU----------UUCGGGCGGGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.odorifer.fasta -CU----------UUCGGGCGGGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.felleus.fasta -CU----------UUCGGGCGGGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.albidoflavus.fasta -CU----------UUCGGGCGGGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.gougerotii.fasta -CU----------UCGGGGUGG--AUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.rutgersensis.fasta -CU----------UCGGGGUGG--AUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.intermedius.fasta -CU----------UCGGGGUGG--AUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.thermodiastaticus.fas -CC----------UUCGGGGGUGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.thermoviolaceus.fasta -CC----------UUCGGGGGUGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.thermovulgaris.1.fast -CC----------UUCGGGAGGGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.thermovulgaris.2.fast -CC----------UUCGGGAGGGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.macrosporus.fasta -CC----------UUCGGGAGGGGAUU-AGUGGCGA-ACGGGUGAGUAAC d.16.b.S.megasporus.fasta -CC----------UUCGGGUGGGGUCGGAGUGGCGA-ACGGGUGAGUAAC d.16.b.S.thermolineatus.fasta --C----------UUCGGGGUGGAUC--AGUGGCGA-ACGGGUGAGUAAC d.16.b.M.tuberculosis.2.fasta -CU------------UCGGAGAUACUCGAGUGGCGA-ACGGGUGAGUAAC d.16.b.M.tuberculosis.3.fasta -CU------------UCGGAGAUACUCGAGUGGCGA-ACGGGUGAGUAAC d.16.b.M.avium.fasta -CU------------UCGGAGGUACUCGAGUGGCGA-ACGGGUGAGUAAC d.16.b.M.leprae.fasta -CUAAAAAAUCUUUUUUAGAGAUACUCGAGUGGCGA-ACGGGUGAGUAAC d.16.b.M.leprae.GEN.fasta -CUAAAAAAUCUUUUUUAGAGAUACUCGAGUGGCGA-ACGGGUGAGUAAC d.16.b.M.tuberculosis.CDC1551. -CU------------UCGGAGAUACUCGAGUGGCGA-ACGGGUGAGUAAC d.16.b.M.tuberculosis.GEN.fast -CU------------UCGGAGAUACUCGAGUGGCGA-ACGGGUGAGUAAC d.16.b.N.asteroides.fasta -UU--------------CGGGGUACACGAGCGGCGA-ACGGGUGAGUAAC d.16.b.R.erythropolis.fasta -UU--------------CGGGGUACACGAGCGGCGA-ACGGGUGAGUAAC d.16.b.C.diphtheriae.fasta -AG----------CUUGCUAGGUACUCGAGUGGCGA-ACGGGUGAGUAAC d.16.b.A.israelii.fasta -UG-------UUUUUUGCGGGGUGGGUUAGUGGCGA-ACGGGUGAGUAAC d.16.b.B.hyodysenteriae.fasta -GGG----------CAACUGGAUAAGUUAGCGGCGA-ACUGGUGAGUAAC d.16.b.G.subterranea.fasta -----AGGAGCUUGCUC-CUUGAGUAUUAGUGGCGA-ACGGGUGAGUAGA d.16.b.P.miotherma.fasta -----CA---UCUUCGG-AUGUAUAAUCAGUGGCGA-ACGGGUGAGUAAA d.16.b.B.andersonii.fasta -----UAGAGCUUGCUCUAUUGCCGGCGAGUGGCGG-ACGGGUGAGUAAC d.16.b.H.aurantiacus.fasta -------CAUUCUUCGG-------AAGGAGUGGCGC-ACGGCUGAGGAAC d.16.b.Leptospirillium.sp.fast -----AGCAAUCCCCCG-------GUAGGGUGGCAA-ACGGGUGAGUAAG d.16.b.A.aeolicus.fasta -------CCCUUUUGGGGCCGGCCGCUGAGCGGCAA-ACGGGUGAGUAAC d.16.b.A.pyrophilus.fasta -------UCCCUCUGGGAGCGGGUGCUGAGCGGCAA-ACGGGUGAGUAAC d.16.b.T.maritima.fasta -------UCCCUUCGGGGAGGAGUACCCAGCGGCGG-ACGGGUGAGUAAC d.16.b.T.maritima.GEN.fasta -------UCCCUUCGGGGAGGAGUACCCAGCGGCGG-ACGGGUGAGUAAC n.16.b.T.thermophilus.2.num.fa -------GUUUU-----ACUCCGUGGUCAGCGGCGG-ACGGGUGAGUAAC s.16.b.T.thermophilus.2.schem. -------GUUUU-----ACUCCGUGGUCAGCGGCGG-ACGGGUGAGUAAC d.16.b.T.thermophilus.2.fasta -------GUUUU-----ACUCCGUGGUCAGCGGCGG-ACGGGUGAGUAAC s.16.b.T.thermophilus.1.schem. -------GUUUU-----ACUCCGUGGUCAGCGGCGG-ACGGGUGAGUAAC n.16.b.T.thermophilus.1.num.fa -------GUUUU-----ACUCCGUGGUCAGCGGCGG-ACGGGUGAGUAAC d.16.b.T.thermophilus.1.fasta -------GUUUU-----ACUCCGUGGUCAGCGGCGG-ACGGGUGAGUAAC d.16.b.T.aquaticus.fasta -------GU--------AUCUCACGGUCAGCGGCGG-ACGGGUGAGUAAC d.16.b.T.roseum.fasta -------NCUCU-----GGCGUGCCGACCGUGGCGG-ACGGGUGCGUAAC d.16.b.P.marina.fasta ------------GAGAGCUCGAGGGGACAGCGGCGA-AAGGGAGAGUAAC d.16.b.P.staleyi.fasta ------------AGCAAUACAUGGAGA--GCGGCGA-AAGGGAGAGUAAU d.16.b.P.Schlesner.fasta ------------AAUGACC------GA--GCGGCGA-AAGGGAGAGGAAA d.16.b.G.obscuriglobus.1.fasta ------------AAGGG--------GA-ACCGGCGU-AAGGGGCAGUAAG d.16.b.I.pallida.fasta ------------AAGGCUA----------GUGGCGA-AAGGGUGAGUAAG d.16.a.P.abyssi.fasta ------------CUUCUGGGACGC---CACCGGCGG-ACGGCUCAGUAAC d.16.a.P.horikoshii.fasta ------------CUUCUGGGACGC---CACCGGCGG-ACGGCUCAGUAAC d.16.a.P.furiosus.fasta ------------CUUCUGGGACGC---CACCGGCGG-ACGGCUCAGUAAC d.16.a.T.celer.fasta ------------CGCCUUGCGCGC----ACCGGCGG-ACGGCUCAGUAAC d.16.a.A.fulgidus.fasta ------------CUUCGGGGAUGCAAGCACCGGCGG-ACGGCUCAGUAAC d.16.a.N.equitans.fasta ------------CCCCGGGUAAGGG-GGCCCGCCGC-ACGGCUGAGUAAC d.16.a.A.pernix.K1.fasta ------------CCCGCCGCUGCGG-GGCGUGGCGG-ACGGCUGAGUAAC d.16.a.P.occultum.fasta ------------CCCCGGACGCGGG-GGCGCGGCGG-ACGGCUGAGUAAC d.16.a.T.tenax.fasta ------------CC-GGGGCGCCGG-G-CGCGGCGC-ACGGCUCAGUAAC d.16.a.S.acidocaldarius.fasta ------------UCCCGGGUAAGGG-AGUGUGGCGG-ACGGCUGAGUAAC d.16.a.S.solfataricus.fasta ------------UCCCGGGUAAGGG-AGUGUGGCGG-ACGGCUGAGUAAC d.16.a.S.solfataricus.2.fasta ------------UCCCGGGCAAGGG-AGCGUGGCGG-ACGGCUGAGUAAC d.16.a.M.thermautotrophicus.1. ------------ACCUU-GUGUUCG-----UGGCGA-ACGGCUCAGUAAC d.16.a.M.thermautotrophicus.2. ------------ACCUU-GUGUUCG-----UGGCGA-ACGGCUCAGUAAC d.16.a.M.formicicum.fasta ------------UCCUUCGGGGUCG-----UGGCGU-ACGGCUCAGUAAC d.16.a.M.vannielii.fasta ------------UUC-----GGCCA-----UGGCGG-ACGGCUCAUUAAC d.16.a.H.marismortui.rrnA.fast --------------GCUUAGACCCG-----UGGCAU-AUAGCUCAGUAAC d.16.a.H.marismortui.rrnB.fast --------------GUUUAGACUCG-----UAGCAU-AUAGCUCAGUAAC d.16.a.Halobacterium.sp.fasta --------------GUUUAGACCCG-----CAGCGG-AAAGCUCAGUAAC d.16.a.N.bangense.fasta --------------GUUUGUACUCG-----UAGCAG-AUAGCUCAGUAAC d.16.a.N.innermongoliae.fasta --------------GUUUAGACUCG-----UAGCAG-AUAGCUCAGUAAC d.16.a.H.volcanii.fasta --------------GUUCAUACUCG-----UGGCGA-AAAGCUCAGUAAC d.16.a.M.hungatei.fasta --------------GUGCAAGACCU-----CGGCGU-ACUGCUCAGUAAC d.16.a.P.torridus.fasta --------------CCGUAAGGCAC-----CGGCGU-ACCGCUCAGUAAC d.16.a.T.acidophilum.fasta --------------CCGUAAGGCAC-----CGGCGA-ACAGCUCAGUAAC a.16.e.G.ardeae.fasta -------GCGGAACUUGCCCAAUGCG----CGG-GGCGCGAGGCAGCGAC d.16.e.G.intestinalis.fasta -------GCGGAACUUGCCCAAUGCG----CGG-CGCGCGAGGCAGCGAC a.16.e.G.muris.fasta -------GCGGAACUUGCCCAAUGCG----UGAAGGCGUGAGGCAGCAAC d.16.e.A.bracteata.fasta -------GCGAAACUUACCCA---CU----CGA--GCG-GAGGUAGUGAC d.16.e.Glomus.sp.W3349.fasta -------GCGCAAAUUACCCAAUCCC-----GACACGGGGAGGUAGUGAC d.16.e.S.cerradensis.fasta -------GCGCAAAUUACCCAAUCCC-----GACACGGGGAGGUAGUGAC a.16.e.G.intraradices.fasta -------GCGCAAAUUACCCAAUCC------GACACGGGGAGGUAGUGAC d.16.e.S.culisetae.fasta -------GCGCAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC a.16.e.P.balamuthi.fasta -------GCGUAAAUUACUCCCUGCC-----GACACGGCGAGGUAGUGAC d.16.e.A.flavus.fasta -------GCGCAAAUUACCCAAUCCC-----GACACGGGGAGGUAGUGAC d.16.e.T.caries.fasta -------GCGCAAAUUACCCAAUCCC-----GACACGGGGAGGUAGUGAC d.16.e.M.circinelloides.fasta -------GCGCAAAUUACCCAAUCCC-----GACACGGGGAGGUAGUGAC d.16.e.M.racemosus.fasta -------GCGCAAAUUACCCAAUCCC-----GACACGGGGAGGUAGUGAC d.16.e.R.oryzae.fasta -------GCGCAAAUUACCCAAUCCC-----GACACGGGGAGGUAGUGAC a.16.e.M.edulis.fasta -------GCGCAAAUUACCCACUCCU-----GGCACGGGGAGGUAGUGAC a.16.e.P.magellanicus.fasta -------GCGCAAAUUACCCACUCCU-----GGCACGGGGAGGUAGUGAC b.16.e.E.granulosus.fasta -------GCGCAAAUUACCCACUCCC-----AGCACGGGGAGGUGGUGAC d.16.e.D.melanogaster.fasta -------GCGUAAAUUACCCACUCCC-----AGCUCGGGGAGGUAGUGAC b.16.e.C.koreana.fasta -------GCGCAAAUUACCCACUCCC-----AGAACGGGGAGGUAGUGAC b.16.e.A.australis.fasta -------GCGCAAAUUACCCACUCCC-----GGCACGGGGAGGUAGUGAC b.16.e.O.utahensis.fasta -------GCGCAAAUUACCCACUCCC-----GGCACGG--AGGUAGUGAC b.16.e.A.salina.fasta -------GCGCAAAUUACCCACUCCC-----AGCACGGGGAGGUAGUGAC d.16.e.M.musculus.fasta -------GCGCAAAUUACCCACUCCC-----GACCCGGGGAGGUAGUGAC d.16.e.R.norvegicus.fasta -------GCGCAAAUUACCCACUCCC-----GACCCGGGGAGGUAGUGAC d.16.e.H.sapiens.fasta -------GCGCAAAUUACCCACUCCC-----GACCCGGGGAGGUAGUGAC d.16.e.O.cuniculus.fasta -------GCGCAAAUUACCCACUCCC-----GACCCGGGGAGGUAGUGAC d.16.e.X.borealis.fasta -------GCGCAAAUUACCCACUCCC-----GACGCGGGGAGGUAGUGAC d.16.e.X.laevis.fasta -------GCGCAAAUUACCCACUCCC-----GACGCGGGGAGGUAGUGAC d.16.e.A.castellanii.fasta -------GCGCAAAUUACCCAAUCCC-----GACACGGGGAGGUAGUGAC d.16.e.B.mandrillaris.fasta -------GCGCAAAUUACCCAAUCCC-----GACACGGGGAGGUAGUGAC d.16.e.P.falciparum.A.fasta -------GCGUAAAUUACCCAAUUCU-----AAAGAAGAGAGGUAGUGAC d.16.e.P.falciparum.S.fasta -------GCGUAAAUUACCCAAUUCU-----AAAAAAGAGAGGUAGUGAC d.16.e.P.vivax.A.fasta -------GCGUAAAUUACCCAAUUCU-----AAAGAAGAGAGGUAGUGAC d.16.e.P.vivax.O.fasta -GCAUGGGAGUAAAUUACCCAACUCU-----AAAGAAGAGAGGUAGUGAC d.16.e.P.vivax.S.fasta -------GCGUAAAUUACCCAAUUCU-----AAAGAAGAGAGGUAGUGAC d.16.e.E.histolytica.fasta -------SCGUAAAUUACCCACUUUC-----GAAUUGAAGAGGUAGUGAC d.16.e.I.hoferi.fasta -------GCGCAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.Dermocystidium.sp.fasta -------GCGCAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.S.destruens.fasta -------GCGCAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.A.unguiculata.fasta -------GCGCAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.D.grandis.fasta -------GCGCAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.A.macrogynus.fasta -------GCGCAAAUUACCCAAUCCU-----GAUACAGGGAGGUAGUGAC d.16.e.B.emersonii.fasta -------GCGCAAAUUACCCAAUCCU-----GAUACAGGGAGGUAGUGAC d.16.e.C.albicans.fasta -------GCGCAAAUUACCCAAUCCC-----GACACGGGGAGGUAGUGAC d.16.e.S.cerevisiae.fasta -------GCGCAAAUUACCCAAUCCU-----AAUUCAGGGAGGUAGUGAC d.16.e.N.crassa.fasta -------GCGCAAAUUACCCAAUCCC-----GACACGGGGAGGUAGUGAC d.16.e.P.anserina.fasta -------GCGCAAAUUACCCAAUCCC-----GACACGGGGAGGUAGUGAC d.16.e.C.immitis.fasta -------GCGCAAAUUACCCAAUCCC-----AACACGGGGAGGUAGUGAC d.16.e.L.major.fasta -------GCGCAAAUUGCCCAAUGUCAAAACAAAACGAUGAGGCAGCGAA d.16.e.T.cruzi.fasta -------GCGCAAAUUGCCCAAUGUCAAAAAAAAAAGAUGAGGCAGCGAA d.16.e.T.brucei.fasta -------GCGCAAAUUGCCCAAUGUCGAAAAAAUACGAUGAGGCAGCGAA d.16.e.P.carinii.fasta -------GCGCAAAUUACCCAAUCCC-----GACACGGGGAGGUAGUGAC d.16.e.C.neoformans.fasta -------GCGCAAAUUACCCAAUCCC-----GACACGGGGAGGUAGUGAC d.16.e.Fungus.sp.QPX.fasta -------GCGCAAAUUACCCAAUCCC-----GACACGGGGAGGUAGUGAC d.16.e.U.maydis.fasta -------GCGCAAAUUACCCAAUCCC-----GACACGGGGAGGUAGUGAC d.16.e.M.leidyi.fasta -------GCGCAAAUUACCCAAUCCC-----GAUUCGGGGAGGUAGUGAC d.16.e.T.cystophora.fasta -------GCGCAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.M.prolifera.fasta -------GCGCAAAUUACCCAAUCCC-----GACUCGGGGAGGUAGUGAC d.16.e.P.haeckeli.fasta -------GCGCAAAUUGCCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.E.rotunda.fasta -------GCGCAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.P.chromatophora.fasta -------GCGCAAAUUACCCAAUCCU-----GACACAGUGAGGUAGUGAC d.16.e.A.majus.fasta -------GCGCAAAUUACCCAAUCCU-----GACACGGGGAGGUAGUGAC d.16.e.S.indicum.fasta -------GCGCAAAUUACCCAAUCCU-----GACACGGGGAGGUAGUGAC d.16.e.D.grandiflora.fasta -------GCGCAAAUUACCCAAUCCU-----GACACGGGGAGGUAGUGAC d.16.e.Pla.lanceolata.fasta -------GCGCAAAUUACCCAAUCCU-----GACACGGGGAGGUAGUGAC d.16.e.N.tabacum.fasta -------GCGCAAAUUACCCAAUCCU-----GACACGGGGAGGUAGUGAC d.16.e.A.thaliana.fasta -------GCGCAAAUUACCCAAUCCU-----GACACGGGGAGGUAGUGAC d.16.e.S.alba.fasta -------GCGCAAAUUACCCAAUCCU-----GACACGGGGAGGUAGUGAC d.16.e.S.tuberosum.fasta -------GCGCAAAUUACCCAAUCCU-----GACACGGGGAGGUAGUGAC d.16.e.F.x.ananassa.fasta -------GCGCAAAUUACCCAAUCCU-----GACACGGGGAGGUAGUGAC d.16.e.G.max.fasta -------GCGCAAAUUACCCAAUCCU-----GACACGGGGAGGUAGUGAC d.16.e.O.sativa.fasta -------GCGCAAAUUACCCAAUCCU-----GACACGGGGAGGUAGUGAC d.16.e.Z.mays.fasta -------GCGCAAAUUACCCAAUCCU-----GACACGGGGAGGUAGUGAC d.16.e.A.verticilliflorum.fast -------GCGCAAAUUACCCAAUCCU-----AAUGCGGGGAGGUAGUGAC d.16.e.G.spirotaenia.fasta -------GCGCAAAUUACCCAAUCCU-----GAUACAGGGAGGUAGUGAC d.16.e.Staurastrum.sp.M752.fas -------GCGCAAAUUACCCAAUCCU-----GAUACAGGGAGGUAGUGAC d.16.e.C.paradoxa.fasta -------GCGCAAAUUACCCAAUCGC-----AACUCGCGGAGGUAGUGAC d.16.e.G.nostochinearum.fasta -------GCGCAAAUUACCCAAUCGC-----AACUCGCGGAGGUAGUGAC d.16.e.G.wittrockiana.fasta -------ACGCAAAUUACCCAAUCGC-----AACUCGCGGAGGUAGUGAC d.16.e.C.luteoviridis.fasta -------GCGCAAAUUACCCAAUCCC-----GACACGGGGAGGUAGUGAC d.16.e.O.longa.fasta -------GCGUAAAUUACCCAAUCCU-----GACUCAGGGAGGUAGUGAC d.16.e.P.weissei.fasta -------GCGUAAAUUACCCAAUCCU-----GACUCAGGGAGGUAGUGAC d.16.e.C.citrina.fasta -------GCGUAAAUUACCCAAUCCU-----GACUCAGGGAGGUAGUGAC d.16.e.G.steinii.fasta -------GCGUAAAUUACCCAAUCCU-----GACUCAGGGAGGUAGUGAC d.16.e.Ple.lanceolata.fasta -------GCGUAAAUUACCCAAUCCU-----GACUCAGGGAGGUAGUGAC d.16.e.O.quadricornutus.fasta -------GCGUAAAUUACCCAAUCCU-----GACUCAGGGAGGUAGUGAC d.16.e.S.lemnae.fasta -------GCGUAAAUUACCCAAUCCU-----GACUCAGGGAGGUAGUGAC d.16.e.S.mytilus.fasta -------GCGUAAAUUACCCAAUCCU-----GACUCAGGGAGGUAGUGAC d.16.e.E.mobilis.fasta -------GCGUAAAUUACCCAAUCCU-----GACUCAGGGAGGUAGUGAC d.16.e.O.granulifera.1.fasta -------GCGUAAAUUACCCAAUCCU-----GACUCAGGGAGGUAGUGAC d.16.e.O.granulifera.2.fasta -------GCGUAAAUUACCCAAUCCU-----GAUUCAGGGAGGUAGUGAC d.16.e.U.gallina.fasta -------GCGUAAAUUACCCAAUCCU-----GACUCAGGGAGGUAGUGAC d.16.e.U.pisces.fasta -------GCGUAAAUUACCCAAUCCU-----GACUCAGGGAGGUAGUGAC d.16.e.P.lepisma.fasta -------GCGUAAAUUACCCAAUCCU-----GACUCAGGGAGGUAGUGAC d.16.e.U.grandis.fasta -------GCGUAAAUUACCCAAUCCU-----AAUUCAGGGAGGUAGUGAC d.16.e.B.coli.fasta -------GCGUAAAUUACCCAAUCCU-----GACUCAGGGAGGUGGUGAC d.16.e.E.aediculatus.fasta -------GCGAAAAUUAUCCAAUCCU-----GAUUCAGGGAGGUAGUGA- d.16.e.T.thermophila.fasta -------AAGAAAAUUGGCCAAUCCU-----AAUUCAGGGAGCCAGUGAC d.16.e.Bangia.sp.NWT.fasta -------GCGCAAAUUACCCAAUCCC-----GACUCGGGGAGGUAGUGAC d.16.e.Bangia.sp.VIS7.fasta -------GCGCAAAUUACCCAAUCCC-----GACUUGGGGAGGUAGUGAC d.16.e.E.carnea.fasta -------GCGCAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.R.parvula.fasta -------GCGCAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.C.coeruleus.fasta -------GCGCAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.P.aerugineum.1.fasta -------GCGCAAAUUACCCAAUCCU-----GACGCAGGGAGGUAGUGAC d.16.e.R.maculata.fasta -------GCGCAAAUUACCCAAUCCU-----GACUCAGGGAGGUAGUGAC d.16.e.A.ambigua.fasta -------GCGUAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.A.baicalensis.fasta -------GCGUAAAUUACCCAAUCCU-----GAUACAGGGAGGUAGUGAC d.16.e.S.nipponica.fasta -------GCGCAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.C.radiatus.fasta -------GCGUAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.C.criophilum.fasta -------GCGUAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.A.capitellata.fasta -------GCGUAAAUUACCCAAUCUU-----GACACAAGGAGGUAGUGAC d.16.e.S.pupula.fasta -------GCGUAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.T.antarctica.fasta -------GCGUAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.E.triangulatum.fasta -------GCGUAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.A.bongranii.fasta -------GCGUAAAUUACCCAAUUCU-----GACACAGAGAGGUAGUGAC d.16.e.Pseudogomphonema.sp.fas -------GCGUAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.D.tenue.fasta -------GCGUAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.G.marina.fasta -------GCGUAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.Thalassionema.sp.fasta -------GCGUAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.R.belgicae.fasta -------CCGCAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.Undatella.sp.fasta -------GCGUAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.C.belgica.fasta -------GCGUAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.O.sinensis.fasta -------GCGUAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.D.brightwellii.fasta -------GCGUAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.L.undulatum.fasta -------GCGUAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.T.eccentrica.fasta -------GCGUAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.T.pseudonana.fasta -------GCGUAAAUUACCCAAUACU-----GAAACAGUGAGGUAGUGAC d.16.e.S.costatum.fasta -------GCGUAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.P.laevis.fasta -------GCGUAAAUUACCCAAUCCU-----GAUACAGGGAGGUAGUGAC d.16.e.L.borealis.fasta -------GCGUAAAUUACCCAAUACU-----GACACAGUGAGGUAGUGAC d.16.e.P.pseudodenticulata.fas -------GCGUAAAUUACCCAAUACU-----GACACAGUGAGGUAGUGAC d.16.e.B.mediterranea.fasta -------GCGUAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.B.pacifica.fasta -------GCGUAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.L.minuta.fasta -------GCGUAAAUUACCCAAUCCU-----GAUACGGGGAGGUAGUGAC d.16.e.L.danicus.fasta -------GCGUAAAUUACCCAAUACU-----GAUACAGUGAGGUAGUGAC d.16.e.Chaetoceros.sp.fasta -------GCGUAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.A.invadans.fasta -------GCGUAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.L.giganteum.fasta -------GCGUAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.M.varians.fasta -------GCGUAAAUUACCCAAUCCU-----AAUACAGGGAGGUAGUAAC d.16.e.B.hominis.fasta -------GCGUAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.P.marinus.fasta -------GCGCAAAUUACCCAAUCCU-----GAUACAGGGAGGUAGUGAC d.16.e.T.gondii.fasta -------GCGCAAAUUACCCAAUCCU-----GAUUCAGGGAGGUAGUGAC d.16.e.A.fundyense.fasta -------GCGCAAAUUACCCAAUCCU-----GGCACAGGGAGGUAGUGAC d.16.e.B.bigemina.fasta -------GCGCAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.B.canis.fasta -------GCGCAAAUUACCCAAUCCC-----GACACGGGGAGGUAGUGAC d.16.e.Babesia.sp.OKD.fasta -------GCGCAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.B.microti.1.fasta -------GCGCAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.B.microti.2.fasta -------GCGCAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.B.microti.3.fasta -------GCGCAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.B.microti.4.fasta -------GCGCAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.B.microti.5.fasta -------GCGCAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.B.rodhaini.fasta -------GCGCAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.B.gibsoni.fasta -------GCGCAAAUUACCCAAUACG-----GACACCGUGAGGUAGUGAC d.16.e.B.bovis.fasta -------GCGCAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.J.libera.fasta -------GCGCAAAUUACCCAAUCUC-----AAUUCGAGGAGGUAGUGAC d.16.e.R.americana.fasta -------GCGCAAAUUACCCAAUGGC-----AAUUCGCCGAGGUAGCGAC d.16.e.B.ostreae.fasta -------GCGCAAAUUACCCAAUUCU-----GACUCAGAGAGGUAGUGAC d.16.e.A.dasyae.fasta -------GCGCAAAUUACCCAAUUCU-----GACACAGAGAGGUAGUGAC d.16.e.A.hermannii.fasta -------GCGCAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.N.helminthoides.fasta -------GCGCAAAUUACCCAAUUCU-----GACACAGAGAGGUAGUGAC d.16.e.B.gelatinosum.fasta -------GCGCAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.N.tortuosa.fasta -------GCGCAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.T.hispida.fasta -------GCGCAAAUUACCCAAUCCU-----AACACAGGGAGGUAGUGAC d.16.e.T.violacea.4.fasta -------GCGCAAAUUACCCAAUCCU-----AACACAGGGAGGUAGUGAC d.16.e.T.violacea.1.fasta -------GCGCAAAUUACCCAAUCCU-----AACACAGGGAGGUAGUGAC d.16.e.T.violacea.2.fasta -------GCGCAAAUUACCCAAUCCU-----AACACAGGGAGGUAGUGAC d.16.e.N.shawii.fasta -------GCGCAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.B.investiens.fasta -------GCGCAAAUUACCCAAUCCU-----AACACAGGGAGGUAGUGAC d.16.e.B.macrosporum.fasta -------GCGCAACUUACCCAAUCCU-----AACACAGGGAGGUAGUGAC d.16.e.A.plicata.fasta -------GCGCAAAUUACCCAAUCCU-----GACACAGGGAGGUAGUGAC d.16.e.C.officinalis.fasta -------GCGUAAAUUACCCAAUCCA-----GACUCUGGGAGGUAGUGAC d.16.e.R.carriebowensis.fasta -------GCGCAAAUUACCCAAUCCG-----GACUCCGGGAGGUAGUGAC d.16.e.B.hamifera.fasta -------GCGCAAAUUACCCCAUCCG-----GACUCCGGGAGGUAGUGAC d.16.e.G.vagum.fasta -------GCGCAAAUUACCCAAUCCG-----GACACCGGGAGGUAGUGAC d.16.e.C.crispus.fasta -------GCGCAAAUUACCCAAUCCG-----GAUACCGGGAGGUAGUGAC d.16.e.H.plana.fasta -------GCGCAAAUUACCCAAUCCG-----GACACCGGGAGGUAGUGAC d.16.e.R.leptophylla.fasta -------GCGCAAAUUACCCAAUCCG-----GACACCGGGAGGUAGUGAC d.16.e.P.pulvinata.fasta -------GCGCAAAUUACCCAAUCCG-----GACACCGGGAGGUAGUGAC d.16.e.C.rubrum.fasta -------GCGCAAAUUACCCAAUCCG-----GACACCGGGAGGUAGUGAC d.16.e.Gracilariopsis.sp.fasta -------GCGCAACUUACCCAAUCCG-----GACACCGGGAGGUAGUGAC d.16.e.B.moritziana.fasta -------GCGCAAAUUACCCAAUCCG-----AACUUCGGGAGGUAGUGAC d.16.e.H.rubra.fasta -------GCGCAAAUUACCCAAUACU-----AAUUCAGUGAGGUAGUGAC d.16.e.D.grisea.fasta -------GCGCAAAUUACCCAAUCCU-----GACUCAGGGAGGUAGUGAC d.16.e.N.fowleri.fasta -------GCGCAAAUUACCCAAUCCC-----AACACGGGGAGGUAGUGAC d.16.e.N.gruberi.fasta -------GCGCAAAUUACCCAAUCUC-----AAUACGAGGAGGUAGUGAC a.16.e.Hexamita.sp.fasta -------GCGGAAAUUGCCCAAUGUAC----AAACGUACGAGGCAGUGAC d.16.e.T.foetus.fasta -------GCGAAACUUACCCACU-CGA----GACUUUCGGAGGUGGUAAU d.16.e.A.khaliulini.fasta -------GCGAAACUUACCCAAU--------GAACAUU-GAGGUAGUUAC d.16.e.E.aedis.fasta -------GCGAAACUUACCCAAU--------GAACGUU-GAGGUAGUUAC d.16.e.A.connecticus.fasta -------GCGAAACUUACCCAAU--------GAACAUU-GAGGUAGUUAC d.16.e.I.barri.fasta -------GCGAAACUUACCCAAU--------GAACAUU-GAGGUAGUUAC d.16.e.A.ferocious.fasta -------GCGAAACUUACCCAAU--------GAACAUU-GAGGUAGUUAC d.16.e.Amblyospora.sp.fasta -------GCGAAACUUACCCAAU--------GAACAUU-GAGGUAGUUAC d.16.e.C.lunata.fasta -------GCGAAACUUACCCAAU--------GAACAUU-GAGGUAGUUAC d.16.e.P.anophelis.fasta -------GCGCAACUUACCCAAU--------GAGGAUU-GAGGUAGUGAC d.16.e.Hazardia.sp.fasta -------GCGAAACUUACCCACUU----G--GAGGACCAGAGGUAGUGAC d.16.e.H.milleri.fasta -------GCGAAACUUACCCACUU----G--GAGGACCAGAGGUAGUGAC d.16.e.P.simulii.fasta -------GCGAAAAUUACCCAAUC----UCCCACGGGAGGAGGUAGUGAC d.16.e.W.palustris.fasta -------GCGAAAAUUACCCAAUC----UCCAUUUGGAGGAGGUAGUGAC d.16.e.Nosema.sp.03.fasta -------GCGAAACUUGACCUA---U--GAUAUUAUAUUGAGGCAGUUAU d.16.e.Nosema.sp.05.fasta -------GCGAAACUUGACCUA---U--GAUAUUAUAUUGAGGCAGUUAU d.16.e.Endoreticulatus.sp.fast -------GCGAAACUUGACCUA---U--GAUGUUAUAUUGAGGCAGUUAU d.16.e.Nosema.sp.02.fasta -------GCGAAACUUGACCUA---U--GAUAUUAUAUUGAGGCAGUUAU d.16.e.N.spodopterae.fasta -------GCGAAACUUGACCUA---U--GAUAUUAUAUUGAGGCAGUUAU d.16.e.N.trichoplusiae.fasta -------GCGAAACUUGACCUA---U--GAUAUUAUAUUGAGGCAGUUAU d.16.e.N.bombycis.27.fasta -------GCGAAACUUGACCUA---U--GAUAUUAUAUUGAGGCAGUUAU d.16.e.N.bombycis.02.fasta -------GCGAAACUUGACCUA---U--GAUAUUAUAUUGAGGCAGUUAU d.16.e.V.imperfecta.fasta -------GCGAAACUUGACCUA---U--GAUAUUAUAUUGAGGCAGUUAU d.16.e.N.furnacalis.fasta -------GCGAAACUUGACCUA---U--GAUAUGAUAUUGAGGCAGUUAU d.16.e.Microsporidium57864.fas -------GCGAAACUUGACCUA---U--GGAUUUUAUCUGAGGCAGUUAU d.16.e.Vairimorpha.sp.C21.fast -------GCGAAACUUGACCUA---U--GGAUUUUUUCUGAGGCAGUUAU d.16.e.N.oulemae.fasta -------GCGAAACUUGACCUA---U--GGAUUUUAUCUGAGGCAGUUAU d.16.e.N.necatrix.fasta -------GCGAAACUUGACCUA---U--GGAUUUUAUCUGAGGCAGUUAU d.16.e.V.necatrix.fasta -------GCGAAACUUGACCUA---U--GGAUUUUAUCUGAGGCAGUUAU d.16.e.N.apis.fasta -------GCGAAACUUGACCUA---U--GGAUAUUAUCUGAGGCAGUUAU d.16.e.O.occidentalis.fasta -------GCGAAACUUGACCUA---U--GGAUUGUUUCUGAGGCAGUUAU d.16.e.Microsporidium.sp.DP119 -------GCGAAAAUUG-UCCA---C--UCUUUUAUGAGGAGACAGUUAU d.16.e.V.corneae.fasta -------GCGAAAAUUG-CCCA---C----UCUUUGCAGGAGGCAGUUAU d.16.e.A.michaelis.fasta -------UCGAAACUUACCGAA---U----UAUAGAAUAGAGGUAGUGAU d.16.e.T.contejeani.fasta -------GCGAAACUUACCCCAAUGC--UAUUUAGUAGUGAGGUAGUUAU d.16.e.E.hellem.fasta -------GCGAAACUUGCCUAA------UCCUUAUUGGGGAGGCGGUUAU d.16.e.Encephalitozoon.sp.fast -------GCGAAACUUGCCUAA------UCCUU--UGGGGAGGCGGUUAU d.16.e.E.cuniculi.fasta -------GCGAAACUUGCCUAA------UCCUU--UGGGGAGGCGGUUAU d.16.e.O.colligata.fasta -------GCGAAACUUGCCUAA------UCCUG--UGGGGAGGCGGUUAU d.16.e.E.salmonis.fasta -------GCGAAAAUUGUCCAC------UCUUUGGAGAGGAGACAGUUAU d.16.e.N.salmonis.fasta -------GCGAAAAUUGUCCAC------UCUUUGGAGAGGAGACAGUUAU d.16.e.Enterocytozoonidae.sp.f -------GCGAAAAUUGUCCAC------UCUUUGUUGAGGAGACAGUUAU d.16.e.E.bieneusi.fasta -------GCGAAACUUGUCCAC------UCCUUACGGGGGAGACAGUCAU d.16.e.B.algerae.fasta -------GCGAAACUUACCCAAUUGU--UUUUUGUGACAGAGGUAGUUAU d.16.e.T.solenopsae.fasta -------GCGAAACUUACCCAAUUAU--UGUAU-UGAUAGAGGUAGUUAU d.16.e.V.acridophagus.fasta -------GCGAAACUUACCCAAUCGU--UUUUUAAGACGGAGGUAGUUAU d.16.e.Bacillidium.sp.fasta -------GCGAAAAUUACCCAAU--U--CCUUAACGGGAGAGGUAGUGAA d.16.e.P.cristatellae.fasta -------GCGAAACUUACCCAAU--U--CCUUAGCGGGAGAGGUAGUGAA d.16.e.Pleistophora.sp.fasta -------GCGAAAAUUGCCCAC--------UGUUUGGAGGAGGCAGUUAU d.16.e.O.operophterae.fasta -------GCGAAAAUUGCCCAC------UCUCUUGCGAGGAGGCGGUUAC d.16.e.F.magnivora.fasta -------GCGAAACUUGCCCAA----------UUGGAGAGAGGCAGUUAU d.16.e.G.atherinae.fasta -------GCGAAAAUUACCGCAG--C--CUGCAUUCAGGGCGGUAGUAAG d.16.e.Ichthyosporidium.sp.fas -------GCGAAAAUUACCGCAG--C--CUGCAUUCAGGUCGGUAGUAAG d.16.e.L.acerinae.fasta -------GCGAAAAUUACCGCAG--C--CUGC-CUCAGGGCGGUAGUAAG d.16.e.H.anguillarum.fasta -------GCGAAAAUUACCGAAG--C--CUCCGGUGAGGGCGGUAGUAAG d.16.e.P.mirandellae.fasta -------GCGAAAAUUACCGAAG--C--CUCCGGUGAGGGCGGUAGUAAG d.16.e.T.hominis.fasta -------GCGCAAAUUACCGAAG--C--CCGCGUUCGGGGCGGUAGUAAG d.16.e.V.culicis.fasta -------GCGGAAAUUACCGAAG--C--CCGCGUUCGGGGCGGUAGUAAG d.16.e.P.hippoglossoideos.fast -------GCGAAAAUUACCGAAG--C--CUGCAUUCAGGGCGGUAGUAAG d.16.e.Microgemma.sp.fasta -------GCGAAAAUUACCGAAG--C--CUCCAAG-AGGGCGGUAGUGAA d.16.e.S.lophii.fasta -------GCGAAAAUUACCGAAG--C--CUCCAAG-AGGGCGGUAGUGAA d.16.e.Pleistophora.sp.LS.fast -------GCGCAAAUUACCGAAG--G--CCGGAGU-GGUGCGGUAGUGAU d.16.e.D.gammarellum.fasta -------GCGAAAAUUAUCGAAG--C--CCAC-UUUGGGGCGAUAGUGAG d.16.e.M.prosopium.fasta -------GCGAAAAUUACCGAAG--C--CUAAAGU-AGGGCGGUAGUAAU d.16.e.A.scoticae.fasta -------GCGAAACUUGCCCAAUCCC-----UACGGGGGGAGGCAGCUAC d.16.e.P.whitei.fasta -------GCGGAACUUGCCCAAUCCC-----AGCGGGGG-AGGCAGCUAC a.16.c.C.coccineum.fasta ACGUAAGAACCUACCCUUGGGAGGGGAACAACGUCU-------------- a.16.c.C.ruber.fasta GCGUAAGAAUCUGUCCUUGGGAGGGGAACAACAGUU-------------- d.16.c.N.tabacum.fasta GCGUAAGAACCUGCCCUUGGGAGGGGAACAACAGCU-------------- d.16.c.S.oleracea.fasta GCGUAAGAACCUGCCCUUGGGAGGGGAACAACAGCU-------------- d.16.c.Z.mays.fasta GCGUAAGAACCUGCCCUUGGGAGGGGAACAACAACU-------------- d.16.c.M.polymorpha.fasta GCGUAAGAACCUGCCCUUGGGAGGGGGACAACAGCU-------------- d.16.c.R.communis.fasta GCGUAAGAACCUGCCCUUGGGAGGGGAACAACAGCU-------------- d.16.c.C.vulgaris.fasta ACGUAAGAACCUACCUUUUGGAGAGGGAUAACCAUU-------------- d.16.c.P.wickerhamii.fasta ACGUAAGAAUCUACCUUUUGGAGAGGGAUAACUACU-------------- d.16.c.P.minor.fasta ACGUAAGAACCUACCCUUUGGAGGAGGAUAACUGUU-------------- d.16.c.N.olivacea.fasta ACGUAAGAACCUACCCUUUGGAGGGGGAUAACGUCU-------------- d.16.c.P.parkeae.fasta GCGUAAGAACCUACCCUUAGGAAGGGGACAACAGCU-------------- d.16.c.C.reinhardtii.fasta GCGUAAGAACCUACCUAUCGGAGGGGGAUAACAUUG-------------- b.16.m.A.castellanii.fasta A-----------CUUUAAGUGG---------------------------- d.16.c.P.thurberi.fasta U-----------UUUUAUUUGG---------------------------- b.16.m.C.crispus.fasta A-----------AAAUUAGUAG---------------------------- d.16.c.T.gondii.fasta A-----------UAGUGAGUAA---------------------------- b.16.m.N.crassa.fasta GCUUAAGCUAAGGUUUAAUCUU---------------------------- b.16.m.P.anserina.fasta G---AGGUUUAAAUUUAGGGUU---------------------------- b.16.m.P.chrysogenum.fasta -------CUAAUAUUUAAA------------------------------- b.16.m.E.nidulans.fasta --------------CUA--------------------------------- b.16.m.S.cerevisiae.fasta U-----AAUGA--ACUAUAGAA---------------------------- b.16.m.W.saturnus.m.fasta ------AAUUA--AGUGGUGUA---------------------------- b.16.m.P.minor.fasta -------------------------------------------------- d.16.c.P.falciparum.fasta A-----GGUGA--GGAUAUAUA---------------------------- d.16.c.B.bovis.fasta A-----CUAAA--AUUGUAAAU---------------------------- b.16.m.T.pyriformis.fasta A-----GGUGAGUAUAAU-ACA---------------------------- d.16.m.S.sinuspaulianus.fasta U-----UACUAGUAUUUUUAAA---------------------------- b.16.m.P.tetraurelia.fasta GCGUAAAAUAUGUCUUUUUAUU---------------------------- b.16.m.D.discoideum.fasta A----AGGUGAGUAAUGCAUAU---------------------------- d.16.m.P.polycephalum.fasta GGGAAAUCCUAGAUUUAAAAGA---------------------------- b.16.m.P.littoralis.fasta A-----------GACUCAUAUC---------------------------- b.16.m.P.wickerhamii.fasta A------UCUGCCUCUUAAACU---------------------------- d.16.c.H.africana.fasta CGG--GUGCGUAAUUACAUAAG---------------------------- d.16.c.C.fragile.fasta G------------CGUAAGAAU---------------------------- d.16.c.C.sertularioides.fasta A------------CCUAAGAAC---------------------------- d.16.c.C.humicola.fasta UACCUUUU------------------------------------------ d.16.c.P.uvella.fasta UACCUUUUAUAUAUUUAAUUAAAAACAAAUGAAGUUUUGU---------- a.16.c.G.nostochinearum.fasta GCGUGAGAANCUGCCUCUAGGAGG-------------------------- a.16.c.G.wittrockiana.fasta GCGUGAGAAUCUGCCUCAAGGAGG-------------------------- d.16.c.C.paradoxa.fasta GCGUGAGAAUCUACCCUUAGGAGG-------------------------- d.16.y.C.paradoxa.fasta GCGUGAGAAUCUACCCUUAGGAGG-------------------------- d.16.c.Cryptomonas.sp.fasta ACGUGAGAAUCUACCCUUAGGAGGAGG----------------------- d.16.c.P.palmata.fasta ACGUGAGAAUCUACCCUUGGGAGG-------------------------- d.16.c.H.akashiwo.fasta ACGUGAGAAUCUGCCUUUAGGAAA-------------------------- d.16.c.S.pseudocostatum.fasta ACGUGAGAAUUUGCCUUUAGGAGG-------------------------- d.16.c.P.littoralis.fasta ACGUGAGAAUUUACCUUUAGGAGG-------------------------- d.16.c.C.caldarium.fasta ACGUGAGAAUCUACCUCUAGGAGG-------------------------- a.16.c.E.huxleyi.fasta ACGUGAGAAUCUGCCCUUAGGAGA-------------------------- d.16.c.E.gracilis.fasta AUGUAAGAAUCUGCGCUUGGGCGA-------------------------- d.16.b.Anabaena.sp.fasta GCGUGAGAAUCUAGCUUCAGGUCG-------------------------- d.16.b.Chlorogloeopsis.PCC7518 GCGUGAGAAUCUAACUUGUGGUUC-------------------------- d.16.b.Synechococcus.sp.fasta GCGUGAGAAUCUGCCUACAGGACG-------------------------- d.16.b.Synechocystis.PCC6803.G ACGUGAGAACCUACCUUCAGAAUG-------------------------- d.16.b.O.agardhii.fasta ACGUAAGAACCUGCCUCUAGGACG-------------------------- d.16.b.Pleurocapsa.7516.fasta GCGUGAGAAUCUGCCUCGAGGAUG-------------------------- d.16.b.M.aeruginosa.fasta GCGUAAGAAUCUAACUUCAGGACG-------------------------- b.16.m.C.reinhardtii.fasta AC---AAAAGUUGCUAGGUGACCC-------------------------- d.16.m.C.eugametos.fasta -C---AAUAGUAACUUAGU------------------------------- b.16.m.M.senile.fasta GU---GCAGACAGGUGAGU------------------------------- d.16.b.S.pneumoniae.fasta AG---GUAACCUGCCUGGUAGCGG-------------------------- d.16.b.S.pyogenes.fasta AG---GUAACCUGCCUNAUAGCGG-------------------------- d.16.b.B.anthracis.fasta AC---GUGGGUAACCUGCCCAUAA-------------------------- d.16.b.B.cereus.1.fasta AC---GUGGGUAACCUGCCCAUAA-------------------------- d.16.b.E.faecalis.fasta AC---GUGGGUAACCUACCCAUCA-------------------------- d.16.b.E.faecium2.fasta AC---GUGGGUAACCUGCCCAUCA-------------------------- d.16.b.L.monocytogenes.fasta AC---GUGGGCAACCUGCCUGUAA-------------------------- d.16.b.B.subtilis.fasta AC---GUGGGUAACCUGCCUGUAA-------------------------- d.16.b.B.subtilis.GEN.fasta AC---GUGGGUAACCUGCCUGUAA-------------------------- d.16.b.B.halodurans.fasta AC---GUGGGCAACCUGCCUGUAA-------------------------- d.16.b.S.aureus.fasta AC---GUGGAUAACCUACCUAUAA-------------------------- d.16.b.S.aureus.GEN.fasta AC---GUGGAUAACCUACCUAUAA-------------------------- d.16.b.L.lactis.GEN.fasta GC---GUGGGGAAUCUGCCUUUGA-------------------------- d.16.b.S.pyogenes.GEN.fasta GC---GUAGGUAACCUACCUCAUA-------------------------- d.16.b.L.acidophilus.fasta AC---GUGGGGAACCUGCCCCAUA-------------------------- d.16.b.M.capricolum.fasta AC---GUAUCUAACCUACCUUAUA-------------------------- d.16.b.M.mycoides.fasta AC---GUAUCUAACCUACCUNAUA-------------------------- d.16.b.E.rhusiopathiae.fasta AC---AUAAGCAACCUGCCUCGAU-------------------------- d.16.b.C.innocuum.fasta AC---GUAGGUAACCUGCCCAUGU-------------------------- d.16.b.M.genitalium.fasta AC---GUAUCCAAUCUACCUUAUA-------------------------- d.16.b.M.pneumoniae.GEN.fasta AC---GUAUCCAAUCUACCUUAUA-------------------------- d.16.b.M.pneumoniae.fasta AC---GUAUCCAAUCUACCUUAUA-------------------------- d.16.b.M.gallisepticum.fasta AC---GUAUCCAAUCUGCCUUAUA-------------------------- d.16.b.U.urealyticum.fasta AC---GUAUCCAAUCUACCCUUAA-------------------------- d.16.b.U.urealyticum.GEN.fasta AC---GUAUCCAAUCUACCCUUAA-------------------------- d.16.b.M.hyopneumoniae.fasta AC---GUACCUAACCUACCUUUUG-------------------------- d.16.b.F.necrophorum.fasta GC---GUAAAGAACUUGCCUCUUA-------------------------- d.16.b.F.nucleatum.fasta GC---GUAAAGAACUUGCCUCACA-------------------------- d.16.b.S.moniliformis.fasta GU---GUAAAGAACUUACCUCUUA-------------------------- d.16.b.C.botulinum.F.fasta AC---GUGGGUAACCUGCCUCAAA-------------------------- d.16.b.C.tetani.fasta ACA--GUGGGCAACCUGCCUCAAA-------------------------- d.16.b.C.perfringens.fasta AC---GUGGGUAACCUGCCUCAUA-------------------------- d.16.b.C.difficile.fasta GC---GUGGGUAACCUACCCUGUA-------------------------- d.16.b.E.brachy.fasta GC---GUAGGCAACC------AUA-------------------------- d.16.b.Epulopiscium.sp.fasta AC---GUGGGUAACCUACCUUAUA-------------------------- d.16.b.H.chlorum.fasta GC---GUGGACAACCUACCGGAGA-------------------------- b.16.m.G.max.fasta UCCUAGCGUGAAGGUUGCUUGUCUCGC----------------------- b.16.m.O.berteriana.fasta UCCUAGCGUUA-GUCCGCUUGUCUCGC----------------------- b.16.m.S.cereale.fasta UCCUAGC-UAAAGUUGUCUCGCCCUGCUUCAAAACUACAGGGCGCGCGCU b.16.m.T.aestivum.fasta UCCUAGC-UAAAGUUGUCUCGCCCUGCUUCAAAACUACAGGGCGCGCGCU d.16.m.Z.mays.fasta UCCUAGC-UAAAGUUGUCUCGCCCUGC-------CUGCAGGGCGCGCGCA b.16.m.M.polymorpha.fasta UCGGAGAAGAAAACCUUUUUUCUUCUCU------GAGCUGCUCAACUUUU b.16.m.N.olivacea.fasta ACGUAGG----AAUCUACCC-----A------------------------ d.16.b.G.liquefaciens.fasta GCGUAGG----UAUCUAUCC-----AUG---------------------- d.16.b.B.japonicum.fasta GCGUGGG----AACGUACCUUUU--------------------------- d.16.b.R.acidophilus.fasta ACGUGGG----AACAUGCCCUUU--------------------------- d.16.b.A.caulinodans.fasta GCGUGGG----GAUGUGCCCAAU--------------------------- d.16.b.B.quintana.fasta GCGUGGG----AAUCUACCCAUC--------------------------- d.16.b.M.loti.fasta GCGUGGG----AAUCUACCCAUC--------------------------- d.16.b.A.tumefaciens.fasta GCGUGGG----AAUCUACCGUGC--------------------------- d.16.b.B.bacilliformis.fasta GCGUGGG----AAUCUACCCAUC--------------------------- d.16.b.B.henselae.fasta GCGUGGG----AAUCUACCCAUC--------------------------- d.16.b.B.melitensis.fasta GCGUGGG----AACGUACCAUUU--------------------------- d.16.b.R.orientis.fasta GCGUGGG----AAUCUACCCAUU--------------------------- d.16.b.Methylobacterium.sp.fas GCGUGGG----AACGUGCCUUCU--------------------------- d.16.b.R.bellii.fasta ACGUGGG----AAUCUGCCCAUC--------------------------- d.16.b.R.felis.URRWXCal2.fasta ACGUGGG----AAUCUGCCCAUC--------------------------- d.16.b.R.prowazekii.fasta ACGUGGG----AAUCUACCCAUC--------------------------- d.16.b.R.prowazekii.GEN.fasta ACGUGGG----AAUCUACCCAUC--------------------------- d.16.b.R.rickettsii.fasta ACGUGGG----AAUCUACCCAUC--------------------------- d.16.b.A.calcoaceticus.fasta GCUUAGG----AAUCUGCCAUUU--------------------------- d.16.b.P.pacificensis.fasta ACUUAGG----AAUCUACCUAGU--------------------------- d.16.b.C.marismortui.fasta GCAUAGG----AAUCUACCCAGU--------------------------- d.16.b.H.halodenitrificans.fas GCAUAGG----AAUCUACCCGGU--------------------------- d.16.b.P.aeruginosa.fasta GCCUAGG----AAUCUGCCUGAU--------------------------- d.16.b.P.aeruginosa.GEN.fasta GCCUAGG----AAUCUGCCUGGU--------------------------- d.16.b.Pseudomonas.sp.fasta GCCUAGG----AAUCUGCCUGGU--------------------------- d.16.b.P.putida.fasta GCCUAGG----AAUCUGCCUGGU--------------------------- d.16.b.C.burnetii.fasta GCGUAGG----AAUCUACCUUGU--------------------------- d.16.b.M.capsulatus.fasta GCGUAGG----AAUCUGCCUUGU--------------------------- d.16.b.L.pneumophila.1.fasta GCGUAGG----AAUAUGCCUUGA--------------------------- d.16.b.L.pneumophila.2.fasta GCGUAGG----AAUAUGCCUUGA--------------------------- d.16.b.A.vinosum.fasta GCAUGGG----AAUCUGCCUGGC--------------------------- d.16.b.Beggiatoa.sp.fasta ACAUAGG----AAUCUGCCUUGU--------------------------- d.16.b.A.hydrophila.fasta GCCUGGG----GAUCUGCCCAGU--------------------------- d.16.b.S.putrefaciens.fasta GCCUAGG----GAUCUGCCCAGU--------------------------- d.16.b.C.freundii.fasta GUCUGGG----AAACUGCNUGAU--------------------------- d.16.b.S.dysenteriae.1.fasta GUCUGGG----AAACUGCCUGAU--------------------------- d.16.b.K.pneumoniae.fasta GUCUGGG----AAACUGCCUGAU--------------------------- d.16.b.P.shigelloides.fasta GCCUGGG----GAUCUGCCCGAU--------------------------- d.16.b.Y.pestis.fasta GUCUGGG----GAUCUGCCUGAU--------------------------- d.16.b.Y.pseudotuberculosis.fa GUCUGGG----GAUCUGCCUGAU--------------------------- d.16.b.S.dysenteriae.2.fasta GUCUGGG----AAACUGCCUGAU--------------------------- d.16.b.E.coli.0157G.GEN.fasta GUCUGGG----AAACUGCCUGAU--------------------------- d.16.b.E.coli.EDL.GEN.fasta GUCUGGG----AAACUGCCUGAU--------------------------- d.16.b.E.coli.fasta GUCUGGG----AAACUGCCUGAU--------------------------- d.16.b.E.coli.K12.GEN.fasta GUCUGGG----AAACUGCCUGAU--------------------------- h.16.b.E.coli.hlxnum.fasta GUCUGGG----AAACUGCCUGAU--------------------------- m.16.b.E.coli.mhg.fasta GUCUGGG----AAACUGCCUGAU--------------------------- s.16.b.E.coli.schem.fasta GUCUGGG----AAACUGCCUGAU--------------------------- d.16.b.S.typhimurium.fasta GUCUGGG----AAACUGCCUGAU--------------------------- d.16.b.S.marcescens.fasta GUCUGGG----AAACUGCCUGAU--------------------------- d.16.b.E.tarda.fasta GUCUGGG----GAUCUGCCUGAU--------------------------- d.16.b.P.vulgaris.fasta GUAUGGG----GAUCUGCCCGAU--------------------------- d.16.b.V.cholerae4.fasta GCCUGGG----AAAUUGCCCGGU--------------------------- d.16.b.V.cholerae5.fasta GCCUGGG----AAAUUGCCCGGU--------------------------- d.16.b.V.cholerae2.fasta GCCUGGG----AAAUUGCCCGGU--------------------------- d.16.b.V.cholerae6.fasta GCCUGGG----AAAUUGCCCGGU--------------------------- d.16.b.V.cholerae.fasta GCCUGGG----AAAUUGCCCGGU--------------------------- d.16.b.V.cholerae.GEN.fasta GCCUGGG----AAAUUGCCCGGU--------------------------- d.16.b.V.parahaemolyticus.fast GCCUAGG----AAAUUGCCCUGA--------------------------- d.16.b.H.influenzae7.fasta GCUUGGG----AAUCUGGCUUAU--------------------------- d.16.b.H.influenzae8.fasta GCUUGGG----AAUCUGGCUUAU--------------------------- d.16.b.H.influenzae6.fasta GCUUGGG----AAUCUGGCUUAU--------------------------- d.16.b.H.influenz.fasta GCUUGGG----AAUCUGGCUUAU--------------------------- d.16.b.H.influenzae.fasta GCUUGGG----AAUCUGGCUUAU--------------------------- d.16.b.P.multocida.fasta GCUUGGG----AAUCUGGCUUAU--------------------------- d.16.b.P.multocida.GEN.fasta GCUUGGG----AAUCUGGCUUAU--------------------------- d.16.b.X.albilineans.fasta ACAUCGG----AAUCUACCUUUU--------------------------- d.16.b.X.campestris.fasta ACAUCGG----AAUCUACUCUUU--------------------------- d.16.b.X.fastidiosa.GEN.fasta ACAUCGG----AAUCUACCUUAU--------------------------- d.16.b.D.nodosus.fasta AUAUAGG----AAUCUGCCUUAU--------------------------- d.16.b.F.tularensis.fasta GCGUAGG----AAUCUGCCCAUU--------------------------- d.16.b.B.parapertussis.fasta GUAUCGG----AACGUGCCCAGU--------------------------- d.16.b.B.pertussis.fasta GUAUCGG----AACGUGCCCAGU--------------------------- d.16.b.B.bronchiseptica2.fasta GUAUCGG----AACGUGCCCAGU--------------------------- d.16.b.u.proteobacterium.fasta ACAUCGG----AACGUGCCCAGU--------------------------- d.16.b.B.mallei.fasta ACAUCGG----AACAUGUCCUGU--------------------------- d.16.b.Burkholderia.sp.fasta ACAUCGG----AACGUGUCCUGU--------------------------- d.16.b.N.meningitidis.MD58.GEN AUAUCGG----AACGUACCGAGU--------------------------- d.16.b.N.meningitidis.Z2491.GE AUAUCGG----AACGUACCGAGU--------------------------- d.16.b.N.gonorrhoeae.fasta AUAUCGG----AACGUACCGGGU--------------------------- d.16.b.C.testosteroni.fasta ACAUCGG----AACGUGCCUAGU--------------------------- d.16.b.D.desulfuricans.fasta GCGUGGA---UAAUCUGCCCUUA--------------------------- d.16.b.M.xanthus.fasta ACGUGGA---UAAUCUGCCUGAG--------------------------- d.16.b.D.thermophilus.fasta GCGUGAG---CAACCUACCCCGC--------------------------- d.16.b.B.burgdorferi.fasta GCGUGGA---UGAUCUACCUAUGAGAUGGGGAUAACUAU----------- d.16.b.B.burgdorferi.GEN.fasta GCGUGGA---UGAUCUACCUAUGAGAUGGGGAUAACUAU----------- d.16.b.B.hermsii.fasta GCGUGGA---UAAUCUACCUAUGAGAUGGGGAUAACUAU----------- d.16.b.S.aurantia.fasta ACGUAGG---UGAUCUGCCUGACGGAUGGGGAUAGCUUG----------- d.16.b.T.pallidum.A.fasta GCGUGGG---UAAUCUGCCUUUGAGAUGGGGAUAGCCUC----------- d.16.b.L.illini.fasta ACGUAGG---UAAUUUGCCCACGGAUGGGGGAUAACCUU----------- d.16.b.L.interrogans.fasta ACGUGGG---UAAUCUUCCUCUGAGUCUGGGAUAACUUU----------- d.16.b.C.trachomatis.GEN.fasta GCAUAGA---UAAUUUGUCCUUAACUUGGGAAUAACGGU----------- d.16.b.C.trachomatis.L2.fasta GCAUAGA---UAAUUUGUCCUUAACUUGGGAAUAACGGU----------- d.16.b.C.muridarum.fasta GCAUAGA---UAAUUUGUCCUUAACUUGGGAAUAACGGU----------- d.16.b.C.pneumoniae.AR39.fasta ACAUAGA---UAAUCUGCCCUCAACUUGGGGAUAACGGU----------- d.16.b.C.pneumoniae.fasta ACAUAGA---UAAUCUGCCCUCAACUUGGGGAUAACGGU----------- d.16.b.C.pneumoniae.J138.fasta ACAUAGA---UAAUCUGCCCUCAACUUGGGGAUAACGGU----------- d.16.b.C.pneumoniae.CWL029.fas ACAUAGA---UAAUCUGCCCUCAACUUGGGGAUAACGGU----------- d.16.b.C.psittaci.fasta ACAUAGA---UAAUCUGUCCUCAACUUGGGAAUAACGGU----------- d.16.b.D.radiodurans.1.fasta ACGUAAC---UGACCUACCCAGAAGUCAUGAAUAACUGG----------- d.16.b.D.radiodurans.GEN.fasta ACGUAAC---UGACCUACCCAGAAGUCACGAAUAACUGG----------- d.16.b.B.fragilis.fasta ACGUAUC---CAACCUGCCCUUUACUCGGGGAUAGCCUU----------- d.16.b.P.gingivalis.fasta GCGUAUG---CAACUUGCCUUACAGAGGGGGAUAACCCG----------- d.16.b.C.vibrioforme.fasta GUAUAGG---UAAGUUGCCUACAGGACCGGCAUAACCCC----------- d.16.b.C.jejuni.fasta GUAUAGU---UAAUCUGCCCUACAC--AAGAGGACAACAGU--------- d.16.b.C.jejuni.GEN.fasta GUAUAGU---UAAUCUGCCCUACAC--AAGAGGACAACAGU--------- d.16.b.C.sputorum.fasta AUUUAAU---AAAUUUUUAUAGCAUUUAAAAAUACAAAAGACU------- d.16.b.H.pylori.26695.GEN.fast GCAUAGG---UUAUGUGCCUCUUAGUUUGGGAUAGCCAU----------- d.16.b.H.pylori.J99.GEN.fasta GCAUAGG---UCAUGUGCCUCUUAGUUUGGGAUAGCCAU----------- d.16.b.H.pylori2.fasta GCAUAGG---UCAUGUGCCUCUUAGUUUGGGAUAGCCAU----------- d.16.b.A.capsulatum.fasta ACGUGAC---UAACCUACCCUCGAGUGG---------------------- d.16.b.H.foetida.fasta GCGUAGG---AGACCUACCUUUUUGUGG---------------------- d.16.b.A.globiformis.fasta ACGUGAG---UAACCUGCCCUUGACUCU---------------------- d.16.b.M.luteus.fasta ACGUGAG---UAACCUGCCCUUAACUCU---------------------- d.16.b.Frankia.sp.fasta ACGUGGG---CAACCUGCCCCGAGCUCU---------------------- d.16.b.S.bottropensis.fasta ACGUGGG---CAAUCUGCCCUUCACUCU---------------------- d.16.b.S.scabiei.fasta ACGUGGG---CAAUCUGCCCUUCACUCU---------------------- d.16.b.S.neyagawaensis.fasta ACGUGGG---CAAUCUGCCCUUCACUCU---------------------- d.16.b.S.diastatochromogenes.f ACGUGGG---CAAUCUGCCCUUCACUCU---------------------- d.16.b.Streptomyces.sp.fasta ACGUGGG---CAAUCUGCCCUGCACUCU---------------------- d.16.b.S.acidiscabies.fasta ACGUGGG---CAAUCUGCCCUUCACUCU---------------------- d.16.b.S.griseus.fasta ACGUGGG---CAAUCUGCCCUUCACUCU---------------------- d.16.b.S.ornatus.fasta ACGUGGG---CAAUCUGCCCUUCACUCU---------------------- d.16.b.S.subrutilus.fasta ACGUGGG---CAAUCUGCCCUUCACUCU---------------------- d.16.b.S.bikiniensis.fasta ACGUGGG---CAAUCUGCCCUUCACUCU---------------------- d.16.b.S.galbus.fasta ACGUGGG---CAAUCUGCCCUUCACUCU---------------------- d.16.b.S.hygroscopicus.fasta ACGUGGG---CAAUCUGCCCUUCACUCU---------------------- d.16.b.S.lincolnensis.fasta ACGUGGG---CAAUCUGCCCUUCACUCU---------------------- d.16.b.S.coelicolor.fasta ACGUGGG---CAAUCUGCCCUUCACUCU---------------------- d.16.b.S.tendae.fasta ACGUGGG---CAAUCUGCCCUGCACUCU---------------------- d.16.b.S.ambofaciens.fasta ACGUGGG---CAAUCUGCCCUGCACUCU---------------------- d.16.b.S.eurythermus.fasta ACGUGGG---CAAUCUGCCCUUCACUCU---------------------- d.16.b.S.nodosus.fasta ACGUGGG---CAAUCUGCCCUGCACUCU---------------------- d.16.b.S.sampsonii.fasta ACGUGGG---CAAUCUGCCCUGCACUCU---------------------- d.16.b.S.glaucescens.fasta ACGUGGG---CAAUCUGCCCUGCACUCU---------------------- d.16.b.S.pseudogriseolus.fasta ACGUGGG---CAAUCUGCCCUGCACUCU---------------------- d.16.b.S.caelestis.fasta ACGUGGG---CAAUCUGCCCUGCACUCU---------------------- d.16.b.S.bluensis.fasta ACGUGGG---CAAUCUGCCCUGCACUCU---------------------- d.16.b.S.espinosus.fasta ACGUGGG---CAAUCUGCCCUGCACUUC---------------------- d.16.b.S.mashuensis.fasta ACGUGGG---CAAUCUGCCCUGCACUCU---------------------- d.16.b.S.rimosus.fasta ACGUGGG---CAAUCUGCCCUGCGCUCU---------------------- d.16.b.S.limosus.fasta ACGUGGG---CAAUCUGCCCUGCACUCU---------------------- d.16.b.S.odorifer.fasta ACGUGGG---CAAUCUGCCCUGCACUCU---------------------- d.16.b.S.felleus.fasta ACGUGGG---CAAUCUGCCCUGCACUCU---------------------- d.16.b.S.albidoflavus.fasta ACGUGGG---CAAUCUGCCCUGCACUCU---------------------- d.16.b.S.gougerotii.fasta ACGUGGG---CAAUCUGCCCUGCACUCU---------------------- d.16.b.S.rutgersensis.fasta ACGUGGG---CAAUCUGCCCUGCACUCU---------------------- d.16.b.S.intermedius.fasta ACGUGGG---CAAUCUGCCCUGCACUCU---------------------- d.16.b.S.thermodiastaticus.fas ACGUGGG---CAAUCUGCCCUGCACUCU---------------------- d.16.b.S.thermoviolaceus.fasta ACGUGGG---CAAUCUGCCCUGCACUCU---------------------- d.16.b.S.thermovulgaris.1.fast ACGUGGG---CAACCUGCCCCGCACACU---------------------- d.16.b.S.thermovulgaris.2.fast ACGUGGG---CAACCUGCCCCGCACACU---------------------- d.16.b.S.macrosporus.fasta ACGUGGG---CAAUCUGCCCUGCACUCU---------------------- d.16.b.S.megasporus.fasta ACGUGGG---CAAUCUGCCCUGCACUCU---------------------- d.16.b.S.thermolineatus.fasta ACGUGGG---CAAUCUGCCCUGCACUCU---------------------- d.16.b.M.tuberculosis.2.fasta ACGUGGG---UGAUCUGCCCUGCACUUC---------------------- d.16.b.M.tuberculosis.3.fasta ACGUGGG---UGAUCUGCCCUGCACUUC---------------------- d.16.b.M.avium.fasta ACGUGGG---CAAUCUACCCUGCACUUC---------------------- d.16.b.M.leprae.fasta ACGUGGG---UAAUCUGCCCUGCACUUCA--------------------- d.16.b.M.leprae.GEN.fasta ACGUGGG---UAAUCUGCCCUGCACUUCA--------------------- d.16.b.M.tuberculosis.CDC1551. ACGUGGG---UGAUCUGCCCUGCACUUC---------------------- d.16.b.M.tuberculosis.GEN.fast ACGUGGG---UGAUCUGCCCUGCACUUC---------------------- d.16.b.N.asteroides.fasta ACGUGGG---UGAUCUGCCUCGUACUUC---------------------- d.16.b.R.erythropolis.fasta ACGUGGG---UGAUCUGCCCUGCACUUC---------------------- d.16.b.C.diphtheriae.fasta ACGUGGG---UGAUCUGCCUCGUACUUC---------------------- d.16.b.A.israelii.fasta ACGUGAG---UAACCUGCCCCUCACUUC---------------------- d.16.b.B.hyodysenteriae.fasta ACGUAGG---UAAUCUGCCGUAGAGUGG---------------------- d.16.b.G.subterranea.fasta ACGUAGG----AACCUGCCUAACG-------------------------- d.16.b.P.miotherma.fasta AGGUAGG----GACCUACCCCGAG-------------------------- d.16.b.B.andersonii.fasta GCGUAGG----AAUCUGCCCAUAG-------------------------- d.16.b.H.aurantiacus.fasta ACGUGACU---AACCUACCCCGGU-------------------------- d.16.b.Leptospirillium.sp.fast ACAUGGGU---GAUCUGCCCUGGA-------------------------- d.16.b.A.aeolicus.fasta ACGUGGG---UAACCUACCCCCAG-------------------------- d.16.b.A.pyrophilus.fasta ACGUGGG---UAACCUACCCCCAG-------------------------- d.16.b.T.maritima.fasta ACGUGGG---UAACCUGCCCUCCG-------------------------- d.16.b.T.maritima.GEN.fasta ACGUGGG---UAACCUGCCCUCCG-------------------------- n.16.b.T.thermophilus.2.num.fa GCGUGGG---UGACCUACCCGGAA-------------------------- s.16.b.T.thermophilus.2.schem. GCGUGGG---UGACCUACCCGGAA-------------------------- d.16.b.T.thermophilus.2.fasta GCGUGGG---UGACCUACCCGGAA-------------------------- s.16.b.T.thermophilus.1.schem. GCGUGGG---UGACCUACCCGGAA-------------------------- n.16.b.T.thermophilus.1.num.fa GCGUGGG---UGACCUACCCGGAA-------------------------- d.16.b.T.thermophilus.1.fasta GCGUGGG---UGACCUACCCGGAA-------------------------- d.16.b.T.aquaticus.fasta GCGUGGG---UGACCUACCCGGAA-------------------------- d.16.b.T.roseum.fasta ACGUGGG---GAACCCUCCCGGGU-------------------------- d.16.b.P.marina.fasta AGGUGGUUU---AUCUACCCUCGG-------------------------- d.16.b.P.staleyi.fasta ACGUAGGA----ACCUACCUUCGG-------------------------- d.16.b.P.Schlesner.fasta ACUUAGGU----ACCUGCCUCUAG-------------------------- d.16.b.G.obscuriglobus.1.fasta GCAUGGGU----ACCUACCCGGGG-------------------------- d.16.b.I.pallida.fasta GCGACGGCA---ACCUACCCCGAG-------------------------- d.16.a.P.abyssi.fasta ACGUCGG---UAACCUACCCUCGG-------------------------- d.16.a.P.horikoshii.fasta ACGUCGG---UAACCUACCCUCGG-------------------------- d.16.a.P.furiosus.fasta ACGUCGG---UAACCUACCCUCGG-------------------------- d.16.a.T.celer.fasta ACGUCGG---UAACCUACCCUCGG-------------------------- d.16.a.A.fulgidus.fasta ACGUGGA---CAACCUGCCCUCGG-------------------------- d.16.a.N.equitans.fasta ACGUCGG---UAACCUACCCUCGG-------------------------- d.16.a.A.pernix.K1.fasta ACGUGGC---UAACCUACCCUCGG-------------------------- d.16.a.P.occultum.fasta ACGUGGC---CAACCUACCCUCGG-------------------------- d.16.a.T.tenax.fasta ACGUACC---CAACCUAACCUCGG-------------------------- d.16.a.S.acidocaldarius.fasta ACGUGGC---UAACCUACCCUCGG-------------------------- d.16.a.S.solfataricus.fasta ACGUGGC---UAACCUACCCUCGG-------------------------- d.16.a.S.solfataricus.2.fasta ACGUGGC---UAACCUACCCUGAG-------------------------- d.16.a.M.thermautotrophicus.1. ACGUGGA---UAACCUGCCCUUGG-------------------------- d.16.a.M.thermautotrophicus.2. ACGUGGA---UAACCUGCCCUUGG-------------------------- d.16.a.M.formicicum.fasta ACGUGGA---UAACCUAACCUUAG-------------------------- d.16.a.M.vannielii.fasta ACGUGGU---UAACUUAACCUCAG-------------------------- d.16.a.H.marismortui.rrnA.fast ACGUGGC---CAAACUACCCUACA-------------------------- d.16.a.H.marismortui.rrnB.fast ACGUGGC---CAAACUACCCUACA-------------------------- d.16.a.Halobacterium.sp.fasta ACGUGGC---CAAGCUACCCUGUG-------------------------- d.16.a.N.bangense.fasta ACGUGGC---CAAACCACCCUAUG-------------------------- d.16.a.N.innermongoliae.fasta ACGUGGC---CAAACUACCCUAUG-------------------------- d.16.a.H.volcanii.fasta ACGUGGC---CAAACUACCCUACA-------------------------- d.16.a.M.hungatei.fasta ACGUGGA---CAAUCUGCCCUGAA-------------------------- d.16.a.P.torridus.fasta ACGCGGA---UAAUCUACCCUCGG-------------------------- d.16.a.T.acidophilum.fasta ACGUGGA---UAAUUUACCCUCAG-------------------------- a.16.e.G.ardeae.fasta GGGGCGUGCCGGGACCCG----------------------GCGCGGGCGU d.16.e.G.intestinalis.fasta GGGGAGCGCGCGAGCGAG----------------------GCG------- a.16.e.G.muris.fasta GGGGGAUCCCAUGAAAUG----------------------GGAAGACUGG d.16.e.A.bracteata.fasta GGGACGUCUAUGGGGAGC----------------------UCUUGAUAAC d.16.e.Glomus.sp.W3349.fasta AAUAAAU-AACAAUACGGGGCUCUUUA--GG-GUCUC---GUAAUUGGAA d.16.e.S.cerradensis.fasta AAUAAAU-AACAAUACAGGGCUCUUUC--GG-GUCUU---GUAAUUGGAA a.16.e.G.intraradices.fasta AAUAAAU-AACAAUACGGGGUUCUUUA--GG-AUCUC---GUAAUUGGAA d.16.e.S.culisetae.fasta AAUAAAU-AACAAUCCAGGGCCAACU----G-GUCUU---GGAAUUGGAA a.16.e.P.balamuthi.fasta GACAAAU-ACCAAGGAAAACCGCCUUU--GGUGGUUU---UCCAUUGGAA d.16.e.A.flavus.fasta AAUAAAU-ACUGAUACGGGGCUCUUUU--GG-GUCUC---GUAAUUGGAA d.16.e.T.caries.fasta AAUAAAU-AACAAUAUAGG--GCUUUU--AAAGUCUU---AUAAUUGGAA d.16.e.M.circinelloides.fasta AAUAAAU-AACAAUGCAGG--GCCUUU--AAGGUCUU---GCAAUUGGAA d.16.e.M.racemosus.fasta AAUAAAU-AACAAUGCAGG--GCCUUU--AAGGUCUU---GCAAUUGGAA d.16.e.R.oryzae.fasta AAUACAU-AACAAUGCAGG--GCCUUU--AAGGUCUU---GCAAUUGGAA a.16.e.M.edulis.fasta GAAAAAU-AACAAUACGGGACUCUUUC--GAGGCCCC---GUAAUUGGAA a.16.e.P.magellanicus.fasta GAAAAAU-AACAAUACGGGACUCUUUC--GAGGCCCC---GUAAUUGGAA b.16.e.E.granulosus.fasta GAAAAAU-ACCGAUGCGGGACUCCUUCAAGAGGCUCC---GUAAUCGGAA d.16.e.D.melanogaster.fasta GAAAAAU-AACAAUACAGGACUCAUAUCCGAGGCCCU---GUAAUUGGAA b.16.e.C.koreana.fasta GAAAAAU-AACGAUACGGAACUCAUAC--GAGGCUCC---GUAAUCGGAA b.16.e.A.australis.fasta GAAAAAU-AACAAUACGGGACUCUAUU--GAGGCCCC---GUAAUUGGAA b.16.e.O.utahensis.fasta GAAAAAU-AACGAUACGGGACUCAUCC--GAGGCCCC---GUAAUCGGAA b.16.e.A.salina.fasta GAAAAAU-AACGAUGCAGGACUCAUCC--GAGGCCCU---GUGAUUGGAA d.16.e.M.musculus.fasta GAAAAAU-AACAAUACAGGACUCUUUC--GAGGCCCU---GUAAUUGGAA d.16.e.R.norvegicus.fasta GAAAAAU-AACAAUACAGGACUCUUUC--GAGGCCCU---GUAAUUGGAA d.16.e.H.sapiens.fasta GAAAAAU-AACAAUACAGGACUCUUUC--GAGGCCCU---GUAAUUGGAA d.16.e.O.cuniculus.fasta GAAAAAU-AACAAUACAGGACUCUUUC--GAGGCCCU---GUAAUUGGAA d.16.e.X.borealis.fasta GAAAAAU-AACAAUACAGGACUCUUUC--GAGGCCCU---GUAAUUGGAA d.16.e.X.laevis.fasta GAAAAAU-AACAAUACAGGACUCUUUC--GAGGCCCU---GUAAUUGGAA d.16.e.A.castellanii.fasta AAUAAAU-AACAAUACAGGCGCUCGAU-AAGAGUCUU---GUAAUUGGAA d.16.e.B.mandrillaris.fasta AAUAAAU-AACAAUACAGGU-CUUGCA-AAAAGACUU---GUAAUUGGAA d.16.e.P.falciparum.A.fasta AAGAAAU-AACAAUGCAAGG-CCAAUU-UUUGGUUUU---GUAAUUGGAA d.16.e.P.falciparum.S.fasta AAGAAAU-AACAAUACAAUA-UCGAAA-AAUGAUUUU---GUAAUUGGAA d.16.e.P.vivax.A.fasta AAGAAAU-AACAAUACAAGG-CCAAUC---UGGCUUU---GUAAUUGGAA d.16.e.P.vivax.O.fasta AAGAAGUUAACAAUACAAGG-CCAAUA---UGGCUUU---AUAAUUGGAA d.16.e.P.vivax.S.fasta AAGAAAU-AACAAUACAAGA-CCAAAA-C-UGGUUUU---GUAAUUGGAA d.16.e.E.histolytica.fasta GACACAU-AACUCUAGAGUU-GAGUAA-AAUCAAUUC---UUGAAGGAAU d.16.e.I.hoferi.fasta AAAAAAU-AACAAUACAGGAUCUUUAA-A--GGUCUU---GUAAUUGGAA d.16.e.Dermocystidium.sp.fasta AAAAAAU-AACAAUACAGGGCUUUUUA----AGUCUU---GUAAUUGGAA d.16.e.S.destruens.fasta AAAAAAU-AACAAUACAGGGCUUUUUA----AGUCUU---GUAAUUGGAA d.16.e.A.unguiculata.fasta AAUAAAU-AACAAUACGGAGCCUUUUA----GGUUUU---GUAAUUGGAA d.16.e.D.grandis.fasta AAUAAAU-AACAAUACAGGGCCUUUUA----GGUUUU---GUAAUUGGAA d.16.e.A.macrogynus.fasta AAUAAAU-AACGAUGCAGGACCUUUUG----GUCUUU---GCAAUUGGAA d.16.e.B.emersonii.fasta AAUAAAU-AACGAUGCGGGGCCUUUUG----GCCAUC---GCAAUUGGAA d.16.e.C.albicans.fasta AAUAAAUAACGAU-ACAGGGCCCUUUU-G--GGUCUU---GUAAUUGGAA d.16.e.S.cerevisiae.fasta AAUAAAUAACGAU-ACAGGGCCCAUUC-G--GGUCUU---GUAAUUGGAA d.16.e.N.crassa.fasta AAUAAAUACUGAU-ACAGGGCUCUUUU-G--GGUCUU---GUAAUUGGAA d.16.e.P.anserina.fasta AAUAAAUACUGAU-ACAGGGCUCUUUU-G--GGUCUU---GUAAUUGGAA d.16.e.C.immitis.fasta AAUAAAUACUGAU-ACAGGGCUCUUUC-G--GGUCUU---GUAAUUGGAA d.16.e.L.major.fasta AAGAAAUAGAGUUGUCAGUCCAUU--U-G--GAUUGU----CAUUU-CAA d.16.e.T.cruzi.fasta AAGAAAUAGAGCCGACAGUGCUUU--U-G--CAUUGU----CGUUUUCAA d.16.e.T.brucei.fasta AAGAAAUAGAGCCGACCGUGCCCUAGU-G--CAUGGU----UGUUUUCAA d.16.e.P.carinii.fasta AAUAAAUAACAAU-ACAGGGCUCUUUU-G--GGUCUU---GUAAUUGGAA d.16.e.C.neoformans.fasta AAUAAAU-AACAAUACAGGGCUCUUUU-G--GGCCUU---GUAAUUGGAA d.16.e.Fungus.sp.QPX.fasta AAUAAAU-AACAAUAUAGGGCCCUAUU-G--GGUCUU---AUAAUUGGAA d.16.e.U.maydis.fasta AAUAAAU-AACAAUGCAGGGCCCUUUU-G--GGUCUU---GUAAUUGGAA d.16.e.M.leidyi.fasta AAUAAAU-AACGUUGCAGGCGCCAACG----GCUUCU---GCAGUCGGAA d.16.e.T.cystophora.fasta AAGAACU-AACAAUAUGGGGCCUUUCU----GGUCUC---AUAAUUGGAA d.16.e.M.prolifera.fasta AAUAAAU-AACAAUGCCGGGCUAAUGU----AGUCUG---GCAAUUGGAA d.16.e.P.haeckeli.fasta AAAAAAU-AACAAUCCAGGGCCUUUUG----GGUCUU---GUAAUUGGAA d.16.e.E.rotunda.fasta AAGAAAU-AACGAUACCGGGCCUUAAU-C--GGUCUG---GUAAUCGGAA d.16.e.P.chromatophora.fasta UAGAAAU-AACCAUACCGGGCUUUUAU----GGUCUG---GUAAUGGGAA d.16.e.A.majus.fasta AAUAAAU-AACAAUACCGGGCUCUAC--G--AGUCUG---GUAAUUGGAA d.16.e.S.indicum.fasta AAUAAAU-AACAAUACCGGGCUCUAC--G--AGUCUG---GUAAUUGGAA d.16.e.D.grandiflora.fasta AAUAAAU-AACAAUACCGGGCUCUAC--G--AGUCUG---GUAAUUGGAA d.16.e.Pla.lanceolata.fasta AAUAAAU-AACAAUACCGGGCUCUAC--G--AGUCUG---GUAAUUGGAA d.16.e.N.tabacum.fasta AAUAAAU-AACAAUACCGGGCUCUAU--G--AGUCUG---GUAAUUGGAA d.16.e.A.thaliana.fasta AAUAAAU-AACAAUACUGGGCUCUUUC-G--AGUCUG---GUAAUUGGAA d.16.e.S.alba.fasta AAUAAAU-AACAAUACCGGGCUCAUU--G--AGUCUG---GUAAUUGGAA d.16.e.S.tuberosum.fasta AAUAAAU-AACAAUACCGGGCUCUAU--G--AGUCUG---GUAAUUGGAA d.16.e.F.x.ananassa.fasta AAUAAAU-AACAAUACCGGGCUCUUU--G--AGUCUG---GUAAUUGGAA d.16.e.G.max.fasta AAUAAAU-AACAAUACCGGGCUCAUU--G--AGUCUG---GUAAUUGGAA d.16.e.O.sativa.fasta AAUAAAU-AACAAUACCGGGCGCUUUA-G--UGUCUG---GUAAUUGGAA d.16.e.Z.mays.fasta AAUAAAU-AACAAUACCGGGCGCGUUA-G--UGUCUG---GUAAUUGGAA d.16.e.A.verticilliflorum.fast AAAAAAU-AACAAUACCGGGCUUUAAC-G--AGUUUG---GUAAUUGGAA d.16.e.G.spirotaenia.fasta AAUAAAU-AACAAUACUUGGCUCUUC--G--AGUCCG---GUAAUUGGAA d.16.e.Staurastrum.sp.M752.fas AAUAAAU-AACAAUACCGGGCUCUAU--G--AGUUUG---GUAAUUGGAA d.16.e.C.paradoxa.fasta AAUAAAU-AACAAUACGGGGCUUUUC--A--AGUCUC---GUAAUUGGAA d.16.e.G.nostochinearum.fasta AAUAAAU-AACAAUACACGGCUUUCU--A--AGUCGU---GUAAUUGGAA d.16.e.G.wittrockiana.fasta AAUAAAU-AACAAUGCGGGGGCUAUC--G--C-UCUC---GCAAUUGGAA d.16.e.C.luteoviridis.fasta AAGAAAU-AACAAUACCGGGCUUUAUC-A--AGUCUG---GUAAUUGGAA d.16.e.O.longa.fasta AAGAAAU-AACGGACCG--AAGCUUUU-----GUUUC---GGGAUUGCAA d.16.e.P.weissei.fasta AAGAAAU-AACGGACCG--AAGCCUAU-----GUUUC---GGGAUUGCAA d.16.e.C.citrina.fasta AAGAAAU-AACGGACCG--AAGCCUAU-----GUUUC---GGGAUUGCAA d.16.e.G.steinii.fasta AAGAAAU-AACGGACCG--AAGCCUAU-----GUUUC---GGGAUUGCAA d.16.e.Ple.lanceolata.fasta AAGAAAU-AACGGACCG--AAGCCUAU-----GUUUC---GGGAUUGCAA d.16.e.O.quadricornutus.fasta AAGAAAU-AACGGACCG--AAGCCUAU-----GUUUC---GGGAUUGCAA d.16.e.S.lemnae.fasta AAGAAAU-AACGGACCG--AAGCAUUU-----GUUUC---GGGAUUGCAA d.16.e.S.mytilus.fasta AAGAAAU-AACGGACCG--AAGCCUAU-----GUUUC---GGGAUUGCAA d.16.e.E.mobilis.fasta AAGAAAU-AACGGACCG--AAGCCUAU-----GUUUC---GGGAUUGCAA d.16.e.O.granulifera.1.fasta AAGAAAU-AACGGACCG--AAGCCUAU-----GUUUC---GGGAUUGCAA d.16.e.O.granulifera.2.fasta AAGAAAU-AACGGACCG--AAGCACAU-----GUUUC---GGGAUUGCAA d.16.e.U.gallina.fasta AAGAAAU-AACGGACCG--AAGCCUAU-----GUUUC---GGGAUUGCAA d.16.e.U.pisces.fasta 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AAUAAAU-AACAAUGCCGGGCCUUUAU---AGGUCUG---GCAAUUGGAA d.16.e.R.belgicae.fasta AAUAAAU-AACAAUGCCGGGCCUUUGU---AGGUCUG---GCAAUUGGAA d.16.e.Undatella.sp.fasta AAUAAAU-AACAAUGAUGUGCCUAUCU---AGGUUUG---UCAAUUGGAA d.16.e.C.belgica.fasta AAUAAAU-AACAAUGCCGGGCCUUUCU---AGGUCUG---GCAAUUGGAA d.16.e.O.sinensis.fasta AAUAAAU-AACAAUGCCGGGCCUUUCU---AGGUCUG---GCAAUUGGAA d.16.e.D.brightwellii.fasta AAUAAAU-AACAAUGCCGGGCCUUUCU---AGGUCUG---GCAAUUGGAA d.16.e.L.undulatum.fasta AAUAAAU-AACAAUGCCGGGCCUUUCU---AGGUCUG---GCAAUUGGAA d.16.e.T.eccentrica.fasta AAUAAAU-AACAAUGCCGGGCCUUUAC---AGGUCUG---GCAAUUGGAA d.16.e.T.pseudonana.fasta AAUAAAU-AACAAUGCCGGGCCUUUAC---AGGUCUG---GCAAUUGGAA d.16.e.S.costatum.fasta AAUAAAU-AACAAUGCCGGGCCUUUAC---AGGUCUG---GCAAUUGGAA d.16.e.P.laevis.fasta AAUAAAU-AACAAUGCCGGGCCUUUCU---AGGUCUG---GCAAUUGGAA d.16.e.L.borealis.fasta AAUAAAU-AACAAUGGCGGGUCUCUAG---AGAUCUG---CCAAUUGGAA d.16.e.P.pseudodenticulata.fas AAUAAAU-AACAAUGGUGGGUUUUUAC---AAAUCUG---CCAAUUGGAA d.16.e.B.mediterranea.fasta AAUAAAU-AACAAUGCCGGGCCUUUUU---AGGUCUG---GCAAUUGGAA d.16.e.B.pacifica.fasta AAUAAAU-AACAAUGCCGGGCCUUUUU---AGGUCUG---GCAAUUGGAA d.16.e.L.minuta.fasta AAUAAAU-AACAAUACGGGGCCCAUC----GGGUCUU---GUAAUUGGAA d.16.e.L.danicus.fasta AAUAAAU-AACGUUGACUGGUCUUAUU---AGAUCAG---UCACACGGAA d.16.e.Chaetoceros.sp.fasta AAUAAAU-AACAAUGCCGUGCCCUUUU---GGGUAUG---GCUUUUGGAA d.16.e.A.invadans.fasta AAUAAAU-AACAAUGC-CGGGCUAAUU---UAGUCUG---GCAAUUGGAA d.16.e.L.giganteum.fasta AAUAAAU-AACAAUGCUCUGGCUCUUC---GAGUCGG---GCAAUUGGAA d.16.e.M.varians.fasta GAUGAAU-AACAAUGUCGGGCCUUUUC---AGGUCUG---ACAAUUGGAA d.16.e.B.hominis.fasta AAUAAAU-CACAAUGCGGGAC---UAU---CAGUCUU---GCAAUUGGAU d.16.e.P.marinus.fasta AAGAAAU-AACAAUACAGGGCAAUUC-----UGUCUU---GUAAUUGGAA d.16.e.T.gondii.fasta AAGAAAU-AACAACACUGGAAAUUUCA----UUUCUA---GUGAUUGGAA d.16.e.A.fundyense.fasta AAGAAAU-AACAAUACAAGGCA-UCCA----UGUCUU---GUACUUGGAA d.16.e.B.bigemina.fasta AAGAAAU-AACAAUACAGGGC--U-UU----CGUCUU---GUAAUUGGAA d.16.e.B.canis.fasta AAGAAAU-AACAAUACAGGGC--U-AA----UGUCUU---GUAAUUGGAA d.16.e.Babesia.sp.OKD.fasta AAGAAAU-AACAAUACAGGGC--A-AU----UGUCUU---GUAAUUGGAA d.16.e.B.microti.1.fasta AAGAAAU-AACAAUACAGGGC--UUAA----AGUCUU---GUAAUUGGAA d.16.e.B.microti.2.fasta AAGAAAU-AACAAUACAGGGC--UUAA----AGUCUU---GUAAUUGGAA d.16.e.B.microti.3.fasta AAGAAAU-AACAAUACAGGGC--UUAA----AGUCUU---GUAAUUGGAA d.16.e.B.microti.4.fasta AAGAAAU-AACAAUACAGGGC--UUAA----AGUCUU---GUAAUUGGAA d.16.e.B.microti.5.fasta AAGAAAU-AACAAUACAGGGC--UUAA----AGUCUU---GUAAUUGGAA d.16.e.B.rodhaini.fasta AAGAAAU-AACAAUACAGGGC--UCAA----AGCUUU---GUAAUUGGAA d.16.e.B.gibsoni.fasta AAGAAAU-AACAAUACAGGGC--UUUA----AGCUUU---GUAAUUGGAA d.16.e.B.bovis.fasta AAGAAAU-ACCAAUACGGGGC---UAC----UGCUCU---GUAAUUGGCA d.16.e.J.libera.fasta AAGAAAU-ACCUGUUGACGGC---UUC----GGCUGU---CAAACGGGAA d.16.e.R.americana.fasta AAGAAAU-AACUGUUGCGGGC---AAA----UGUCUG---CAAACGGGAA d.16.e.B.ostreae.fasta AAGAAAU-AACGAUAUGCGGCCAACUG-----GUUGC---UUAUCCGGAA d.16.e.A.dasyae.fasta AAGAAAU-AUCAAUAGAGGGCGUUUAU---ACGUCUU---CUAAUUGGAA d.16.e.A.hermannii.fasta AAGAAAU-AUCAAUAGAGGGCAUUUAU---AUGUCUU---CUAAUUGGAA d.16.e.N.helminthoides.fasta AAGAAAU-AUCAAUAGAGGGCGUUUAU---ACGUCUU---CUAAUUGGAA d.16.e.B.gelatinosum.fasta AAGAAAU-AUCAAUAGGGGGCGUUUAU---ACGUCUU---CUAAUUGGAA d.16.e.N.tortuosa.fasta AAGAAAU-AUCAAUAGAGGGCGUUUCU---ACGUCUU---CUAAUUGGAA d.16.e.T.hispida.fasta AAGAAAU-AUCAAUAGAGGGCGUUUGU---ACGUCUU---CUAAUUGGAA d.16.e.T.violacea.4.fasta AAGAAAU-AUCAAUAGAGGGCGUUUGU---ACGUCUU---CUAAUUGGAA d.16.e.T.violacea.1.fasta AAGAAAU-AUCAAUAGAGGGCGUUUCU---ACGUCUU---CUAAUUGGAA d.16.e.T.violacea.2.fasta AAGAAAU-AUCAAUAGAGGGCGUUUCU---ACGUCUU---CUAAUUGGAA d.16.e.N.shawii.fasta AAGAAAU-AUCAAUAGAGGGCGUUUCU---ACGUCUU---CUAAUUGGAA d.16.e.B.investiens.fasta AAGAAAU-AUCAAUAGAGGGCGUUUAU---ACGUCUU---CUAAUUGGAA d.16.e.B.macrosporum.fasta AAGAAAU-AUCAAUAGAGGGCGCAUAU---GCGUCUU---CUAAUUGGAA d.16.e.A.plicata.fasta AAGAAAU-AGCAAUAGAGGGC-CCAAU---GGGUUUU---CUAAUUGGAA d.16.e.C.officinalis.fasta AAGAAAU-AUCAAUAGGGGAC-CCAUA---AAGUCUU---CUAAUUGGAA d.16.e.R.carriebowensis.fasta AAGAAAU-AUCAAUAGGGGAC-CCGAU---GGGUGCC---CUAAUUGGAA d.16.e.B.hamifera.fasta AAGAAAU-AGCAAUAGAGGGC-CCGAU---GGGCUUU---CUAAUUGGAA d.16.e.G.vagum.fasta AAGAAAU-AGCAAUAGAGGGC-CCGAU---GGGUUUU---CUAAUUGGAA d.16.e.C.crispus.fasta AAGAAAU-AGCAAUAGAGGGC-CCAAC---GGGUUUU---CUAAUUGGAA d.16.e.H.plana.fasta AAGAAAU-AGCAAUAGAGGGC-CCGAU---GGGUUUU---CUAAUUGGAA d.16.e.R.leptophylla.fasta AAGAAAU-AUCAAUAGAGGGC-CCGAU---GGGUUUU---CUAAUUGGAA d.16.e.P.pulvinata.fasta AAGAAAU-AGCAAUAGAGGGC-CCGAU---GGGUUUU---CUAAUUGGAA d.16.e.C.rubrum.fasta AAGAAAU-AGCAAUAGAGGGC-CCAAU---GGGUUUU---CUAAUUGGAA d.16.e.Gracilariopsis.sp.fasta AAGAAAU-AGCAAUAGAGGGC-CCGAU---GGGUUUU---CUAAUUGGAA d.16.e.B.moritziana.fasta AAGAAAU-AGCAAUAGGGGGA-CCAAU---GGUCUCU---CUAAUUGGAA d.16.e.H.rubra.fasta AAAGAGU-AUCAAUAGGGGGG-CCAUC---GGCUCUU---CUAGUUGGAA d.16.e.D.grisea.fasta AAAAAAU-AACGAUAGUGUGC-UCUUU---GAGUGUA---CUAAUUGGAA d.16.e.N.fowleri.fasta AAGAUAU-AGUGUCUCAUCACC-UUCGGUGGUGAGGUAUUAUCAUUUGAU d.16.e.N.gruberi.fasta AAGCUAU-AGUGACUCCACACCAUUCGGUGGGGAGGUAUUGUCUUCUGAC a.16.e.Hexamita.sp.fasta GAAAAAU--CUUGAGCCGGCUUA----------GGCC---GGUAUUAAGC d.16.e.T.foetus.fasta GACCAGU--UACAUGUCAACCUU----------UUUG---GUUGUUUGUA d.16.e.A.khaliulini.fasta GAGGCGUA--------------GCAUU---------U---AUAUGUGGUA d.16.e.E.aedis.fasta GAGGCGUA--------------GUAU---------------UAUGAAGUG d.16.e.A.connecticus.fasta GAGGCGUA--------------UUAUU-------AGU---GUAUAUGGUG d.16.e.I.barri.fasta GAGGUGUC--------------AUUUA---------U---AGAUGACAAG d.16.e.A.ferocious.fasta GAGGCGUA--------------AGUU----------------AUAUUGAG d.16.e.Amblyospora.sp.fasta GGGGUGUG--------------ACAUU-------------CUAUGAACCG d.16.e.C.lunata.fasta GAGGCGUACCUAUGUAAUAUAAUUAUA-------UAG---GGAUGAGGUA d.16.e.P.anophelis.fasta GAGGCGUA---------------GAUU---------------GUGAGUUG d.16.e.Hazardia.sp.fasta GAGGCGUG---------------AACC---------------AUGAGGCC d.16.e.H.milleri.fasta GAGGCGUG---------------AAC----------------AUGAGGUC d.16.e.P.simulii.fasta GAAACGUA---------------UGCG--------------AGAGAGAGC d.16.e.W.palustris.fasta GAAACGUA---------------UGCG--------------AGAGAGGGC d.16.e.Nosema.sp.03.fasta GAGUAGUAUUU-----------UAUA--------AUU---AUUGUAGUAU d.16.e.Nosema.sp.05.fasta GAGUAGUUUUU-----------UAUA--------AUU---AUUGUAGUAU d.16.e.Endoreticulatus.sp.fast GAGUAGUAUUU-----------UAUA--------AUU---AUUGUAGUAU d.16.e.Nosema.sp.02.fasta GAGUAGUAUUU-----------UAUA--------AUU---AUUGUAGUAU d.16.e.N.spodopterae.fasta GAGUAGUAUUU-----------UAUA--------AUU---AUUGUAGUAU d.16.e.N.trichoplusiae.fasta GAGUAGUAUUU-----------UAUA--------AUU---AUUGUAGUAU d.16.e.N.bombycis.27.fasta GAGUAGUAUUU-----------UAUA--------AUU---AUUGUAGUAU d.16.e.N.bombycis.02.fasta GAGUAGUAUUU-----------UAUA--------AUU---AUUGUAGUAU d.16.e.V.imperfecta.fasta GAGUAGUAUUU-----------UAUA--------AUU---AUUGUAAUAU d.16.e.N.furnacalis.fasta GAGUAGUAUUU-----------U-UA--------AUU---AUUGUAGUAU d.16.e.Microsporidium57864.fas GGGAAGUAAUA-----------UUAU--------AUU---GUU-UCAUAU d.16.e.Vairimorpha.sp.C21.fast GGGAAGUAAUA-----------UUAU--------AUU---GUU-UCAUAU d.16.e.N.oulemae.fasta GGGAAGUAAUA-----------UUAU--------AUU---GUU-UCAUAU d.16.e.N.necatrix.fasta GGGAAGUAAUA-----------UUCU--------AUU---GUU-UCAUAU d.16.e.V.necatrix.fasta GGGAAGUAAUA-----------UUCU--------AUU---GUU-UCAUAU d.16.e.N.apis.fasta GGGAAGUAACA-----------UA----------GUU---GUU-UCACAU d.16.e.O.occidentalis.fasta GGGAAGUAAU------------UUAU--------AUU---GUU-UCAUAU d.16.e.Microsporidium.sp.DP119 GAAACGUGA-A-----------UAUA--------A-----GUUUGAAUUU d.16.e.V.corneae.fasta GAGACGUG--------------------------AAG---AUGAGUAUCU d.16.e.A.michaelis.fasta GGAAACGUUUA-----------UAUA--------GAA---AUACUGGUAA d.16.e.T.contejeani.fasta AAGAAGUAGUG-----------AAUGU-------AUU---UUACUGAUUU d.16.e.E.hellem.fasta GAGAAGUAAGA-----------UGUU---------UA---GCAAGUA--- d.16.e.Encephalitozoon.sp.fast GAGAAGUGAG------------UUUU---------UU---UCGAGUG--- d.16.e.E.cuniculi.fasta GAGAAGUGAUG-----------UGUG---------U----GCGAGUG--- d.16.e.O.colligata.fasta GAGACGUAUGA-----------UAUUG-------UUA---UGAAGCGGAC d.16.e.E.salmonis.fasta GAGGCGUGAUU-----------AAAA----------------GAGCGAAG d.16.e.N.salmonis.fasta GAGGCGUGAUU-----------AAAA----------------GAGCGAAG d.16.e.Enterocytozoonidae.sp.f GAGGCGUGAUU-----------GUAA----------------GAGCGGAG d.16.e.E.bieneusi.fasta GAGACGUGAGU-----------AUAA----------------GACCUGAG d.16.e.B.algerae.fasta GACGUAUUCU--------------------------U---UAGAGAGAGA d.16.e.T.solenopsae.fasta GACGCAUGUUA-----------AGAU---------UU---UAAAUUGAAA d.16.e.V.acridophagus.fasta GACACAUGUGA-----------AU-U---------AU---UCACGAGGAA d.16.e.Bacillidium.sp.fasta GAGACAUGAAU-----------AUGG---------UA---UUCGAGUAGG d.16.e.P.cristatellae.fasta GAGACAUGAAG-----------UUCU---------AC---UUAGAGACUG d.16.e.Pleistophora.sp.fasta GAGACGUGAGA-----------AAGA------------------GUGCUU d.16.e.O.operophterae.fasta GAGGCGUGACG-----------GAAG-----------------GGCGCAC d.16.e.F.magnivora.fasta GAGACGUAUAU-----------UUUG--------------------UAAC d.16.e.G.atherinae.fasta GAGACGUGAAAAC-------------------------------AAUGUG d.16.e.Ichthyosporidium.sp.fas GAGACGUGUAAAC-------------------------------GAUGUG d.16.e.L.acerinae.fasta GAGACGUGAAUGC-------------------------------GAAGUG d.16.e.H.anguillarum.fasta GAGACGUGGAAAC-------------------------------GAUGAG d.16.e.P.mirandellae.fasta GAGACGUGAAUAC-------------------------------GAUGUG d.16.e.T.hominis.fasta GAGACGUGUAAGC-------------------------------GAUGUG d.16.e.V.culicis.fasta GAGACGUGAAUAC-------------------------------GAUGUG d.16.e.P.hippoglossoideos.fast GAAACGUGAAAAC-------------------------------GAUGUG d.16.e.Microgemma.sp.fasta GAGACGUGAAUUU--------------------------------AAGUG d.16.e.S.lophii.fasta GAGACGUGAAAAC--------------------------------AAGUG d.16.e.Pleistophora.sp.LS.fast GAAACGUANAUAUU------------------------------GAGAGG d.16.e.D.gammarellum.fasta GAGACGUAAAUAU-------------------------------GAUGUA d.16.e.M.prosopium.fasta GAAACGUGGAAAAC------------------------------GAUGUA d.16.e.A.scoticae.fasta AAGACGUGGGGAA----------------------------GCCCCGGAA d.16.e.P.whitei.fasta AAGACGUGGGGA-----------------------------GCCCCGGAA a.16.c.C.coccineum.fasta ----------------------------------------GGAAAUGGCC a.16.c.C.ruber.fasta ----------------------------------------GGAAACGUCU d.16.c.N.tabacum.fasta ----------------------------------------GGAAACGGCU d.16.c.S.oleracea.fasta ----------------------------------------GGAAACGGCU d.16.c.Z.mays.fasta ----------------------------------------GGAAACGGUU d.16.c.M.polymorpha.fasta ----------------------------------------GGAAACGGUU d.16.c.R.communis.fasta ----------------------------------------GGAAACGGCU d.16.c.C.vulgaris.fasta ----------------------------------------GGAAACGAUG d.16.c.P.wickerhamii.fasta ----------------------------------------GGAAACGGUA d.16.c.P.minor.fasta ----------------------------------------GGAAACGGCA d.16.c.N.olivacea.fasta ----------------------------------------GGAAACAGUC d.16.c.P.parkeae.fasta ----------------------------------------GGAAACGGCU d.16.c.C.reinhardtii.fasta ----------------------------------------GGAAACUGUU b.16.m.A.castellanii.fasta ----------------------------------------UGACCUGGUG d.16.c.P.thurberi.fasta ----------------------------------------UGUUUUGAUA b.16.m.C.crispus.fasta ----------------------------------------CGAACGGGUG d.16.c.T.gondii.fasta ----------------------------------------UGUAUGAGAA b.16.m.N.crassa.fasta ----------------------------------------UGACUUAAGC b.16.m.P.anserina.fasta ----------------------------------------UAUUCUCCUC b.16.m.P.chrysogenum.fasta -------------------------------------------------- b.16.m.E.nidulans.fasta -------------------------------------------------- b.16.m.S.cerevisiae.fasta ----------------------------------------UAAGCUAAAU b.16.m.W.saturnus.m.fasta ----------------------------------------UCCG-UGAGU b.16.m.P.minor.fasta -------------------------------------------------- d.16.c.P.falciparum.fasta ----------------------------------------AAUUUUUAAU d.16.c.B.bovis.fasta ----------------------------------------CGAGGAUAAC b.16.m.T.pyriformis.fasta ----------------------------------------UAAAUAUGCC d.16.m.S.sinuspaulianus.fasta ----------------------------------------UUAAUUUGCU b.16.m.P.tetraurelia.fasta ----------------------------------------CGUAUUGUAC b.16.m.D.discoideum.fasta ----------------------------------------GAAUUUUAAU d.16.m.P.polycephalum.fasta ----------------------------------------U---UAUAUC b.16.m.P.littoralis.fasta ----------------------------------------UGGCCCCAAC b.16.m.P.wickerhamii.fasta ----------------------------------------GCGGAAUAAC d.16.c.H.africana.fasta ----------------------------------------AACUUAUCCU d.16.c.C.fragile.fasta ----------------------------------------CUGCUUUUGG d.16.c.C.sertularioides.fasta ----------------------------------------CAACCCUUUG d.16.c.C.humicola.fasta -------------------------------------------------- d.16.c.P.uvella.fasta ----------------------------------------UAUUUUUGAU a.16.c.G.nostochinearum.fasta ----------------------------------------GGGACAACAG a.16.c.G.wittrockiana.fasta ----------------------------------------AGGAUAACAG d.16.c.C.paradoxa.fasta ----------------------------------------GGGACAACAG d.16.y.C.paradoxa.fasta ----------------------------------------GGGACAACAG d.16.c.Cryptomonas.sp.fasta ----------------------------------------GGGAUAACAG d.16.c.P.palmata.fasta ----------------------------------------GGAAUAACAG d.16.c.H.akashiwo.fasta ----------------------------------------GGGACAACAU d.16.c.S.pseudocostatum.fasta ----------------------------------------GGGAUAACAA d.16.c.P.littoralis.fasta ----------------------------------------GGAAUAACAG d.16.c.C.caldarium.fasta ----------------------------------------GGGAUAACAG a.16.c.E.huxleyi.fasta ----------------------------------------AGAAUAACUA d.16.c.E.gracilis.fasta ----------------------------------------GGAAUAACAG d.16.b.Anabaena.sp.fasta -----------------------------------------GGGACAACC d.16.b.Chlorogloeopsis.PCC7518 -----------------------------------------GGGAUAACC d.16.b.Synechococcus.sp.fasta -----------------------------------------GGGACAACA d.16.b.Synechocystis.PCC6803.G -----------------------------------------GGGACAACA d.16.b.O.agardhii.fasta -----------------------------------------GGGACAACA d.16.b.Pleurocapsa.7516.fasta -----------------------------------------GGGACAACA d.16.b.M.aeruginosa.fasta -----------------------------------------GGGACAACA b.16.m.C.reinhardtii.fasta -----------------------------------------AAUACGGG- d.16.m.C.eugametos.fasta -----------------------------------------AUUAUAAG- b.16.m.M.senile.fasta -----------------------------------------AAAUCCGG- d.16.b.S.pneumoniae.fasta -----------------------------------------GGGAUAAC- d.16.b.S.pyogenes.fasta -----------------------------------------GGGAUAAC- d.16.b.B.anthracis.fasta -----------------------------------------GACUGGGAU d.16.b.B.cereus.1.fasta -----------------------------------------GACUGGGAU d.16.b.E.faecalis.fasta -----------------------------------------GAGGGGGAU d.16.b.E.faecium2.fasta -----------------------------------------GAAGGGGAU d.16.b.L.monocytogenes.fasta -----------------------------------------GUUGGGGAU d.16.b.B.subtilis.fasta -----------------------------------------GACUGGGAU d.16.b.B.subtilis.GEN.fasta -----------------------------------------GACUGGGAU d.16.b.B.halodurans.fasta -----------------------------------------GACUGGGAU d.16.b.S.aureus.fasta -----------------------------------------GACUGGGAU d.16.b.S.aureus.GEN.fasta -----------------------------------------GACUGGGAU d.16.b.L.lactis.GEN.fasta -----------------------------------------GCGGGGGAC d.16.b.S.pyogenes.GEN.fasta -----------------------------------------GCGGGGGAU d.16.b.L.acidophilus.fasta -----------------------------------------GUCUGGGAU d.16.b.M.capricolum.fasta -----------------------------------------GCGGGGGAU d.16.b.M.mycoides.fasta -----------------------------------------GCGGGGGAU d.16.b.E.rhusiopathiae.fasta -----------------------------------------GCCUGGGAU d.16.b.C.innocuum.fasta -----------------------------------------GUCCGGGAU d.16.b.M.genitalium.fasta -----------------------------------------AUGGGGGAU d.16.b.M.pneumoniae.GEN.fasta -----------------------------------------AUGGGGGAU d.16.b.M.pneumoniae.fasta -----------------------------------------AUGGGGGAU d.16.b.M.gallisepticum.fasta -----------------------------------------GUGGGGGAU d.16.b.U.urealyticum.fasta -----------------------------------------GUUGGGGAU d.16.b.U.urealyticum.GEN.fasta -----------------------------------------GUUGGGGAU d.16.b.M.hyopneumoniae.fasta -----------------------------------------GACUGGGAU d.16.b.F.necrophorum.fasta -----------------------------------------GACCGGGAC d.16.b.F.nucleatum.fasta -----------------------------------------GCUAGGGAC d.16.b.S.moniliformis.fasta -----------------------------------------GACUGGGAU d.16.b.C.botulinum.F.fasta -----------------------------------------GUGGGGGAU d.16.b.C.tetani.fasta -----------------------------------------GAGGGGAAU d.16.b.C.perfringens.fasta -----------------------------------------GAGUGGAAU d.16.b.C.difficile.fasta -----------------------------------------CACACGGAU d.16.b.E.brachy.fasta -----------------------------------------CAAAGGGAU d.16.b.Epulopiscium.sp.fasta -----------------------------------------CUGUGGAAU d.16.b.H.chlorum.fasta -----------------------------------------GUGGGGGAU b.16.m.G.max.fasta -----------CCAGGA-------------GG--UGGGAACAGUUGAAAA b.16.m.O.berteriana.fasta -----------CCAACA---------UGUUGG--UGGGAACAGUUGAGAA b.16.m.S.cereale.fasta ACGGCUUUGACCUAACGGCCUCCGUUUGCUGGAAUCGGAAUAGUUGAGAA b.16.m.T.aestivum.fasta ACGGCUUUGACCUAACGGCCUCCGUUUGCUGGAAUCGGAAUAGUUGAGAA d.16.m.Z.mays.fasta ACGGCUUUGACCUAACGGCCUCCGUUUGCUGGAAUCGGAAUAGUUGAGAA b.16.m.M.polymorpha.fasta AAUCAGUUGAGCCUGCGGCCUCCAAUCAACCG--UGAGAAUCGUUGAAAA b.16.m.N.olivacea.fasta -------------------------------------------------A d.16.b.G.liquefaciens.fasta -----------------------------------------GGUGGGGGA d.16.b.B.japonicum.fasta -----------------------------------------GGUUCGGAA d.16.b.R.acidophilus.fasta -----------------------------------------GGUUCGGAA d.16.b.A.caulinodans.fasta -----------------------------------------GGUGCGGAA d.16.b.B.quintana.fasta -----------------------------------------UCUACGGAA d.16.b.M.loti.fasta -----------------------------------------UCUACGGAA d.16.b.A.tumefaciens.fasta -----------------------------------------CCUGCGGAA d.16.b.B.bacilliformis.fasta -----------------------------------------UCUACGGAA d.16.b.B.henselae.fasta -----------------------------------------UCUACGGAA d.16.b.B.melitensis.fasta -----------------------------------------GCUACGGAA d.16.b.R.orientis.fasta -----------------------------------------GGUGCGGAA d.16.b.Methylobacterium.sp.fas -----------------------------------------GGUCUGGAA d.16.b.R.bellii.fasta -----------------------------------------AGUACGGAA d.16.b.R.felis.URRWXCal2.fasta -----------------------------------------AGUACGGAA d.16.b.R.prowazekii.fasta -----------------------------------------AGUACGGAA d.16.b.R.prowazekii.GEN.fasta -----------------------------------------AGUACGGAA d.16.b.R.rickettsii.fasta -----------------------------------------AGUACGGAA d.16.b.A.calcoaceticus.fasta -----------------------------------------AGUGGGGGA d.16.b.P.pacificensis.fasta -----------------------------------------AGUGGGGGA d.16.b.C.marismortui.fasta -----------------------------------------CGUGGGGGA d.16.b.H.halodenitrificans.fas -----------------------------------------AGUGGGGGA d.16.b.P.aeruginosa.fasta -----------------------------------------AGUGGGGGA d.16.b.P.aeruginosa.GEN.fasta -----------------------------------------AGUGGGGGA d.16.b.Pseudomonas.sp.fasta -----------------------------------------AGUGGGGGA d.16.b.P.putida.fasta -----------------------------------------AGUGGGGGA d.16.b.C.burnetii.fasta -----------------------------------------AGUGGGGGA d.16.b.M.capsulatus.fasta -----------------------------------------UGUGGGGGA d.16.b.L.pneumophila.1.fasta -----------------------------------------AGAGGGGGA d.16.b.L.pneumophila.2.fasta -----------------------------------------AGAGGGGGA d.16.b.A.vinosum.fasta -----------------------------------------AGAGGGGGA d.16.b.Beggiatoa.sp.fasta -----------------------------------------AGUGGGGGA d.16.b.A.hydrophila.fasta -----------------------------------------CGAGGGGGA d.16.b.S.putrefaciens.fasta -----------------------------------------CGAGGGGGA d.16.b.C.freundii.fasta -----------------------------------------GGAGGGGGA d.16.b.S.dysenteriae.1.fasta -----------------------------------------GGAGGGGGA d.16.b.K.pneumoniae.fasta -----------------------------------------GGAGGGGGA d.16.b.P.shigelloides.fasta -----------------------------------------AGAGGGGGA d.16.b.Y.pestis.fasta -----------------------------------------GGAGGGGGA d.16.b.Y.pseudotuberculosis.fa -----------------------------------------GGAGGGGGA d.16.b.S.dysenteriae.2.fasta -----------------------------------------GGAGGGGGA d.16.b.E.coli.0157G.GEN.fasta -----------------------------------------GGAGAGGGA d.16.b.E.coli.EDL.GEN.fasta -----------------------------------------GGAGGGGGA d.16.b.E.coli.fasta -----------------------------------------GGAGGGGGA d.16.b.E.coli.K12.GEN.fasta -----------------------------------------GGAGGGGGA h.16.b.E.coli.hlxnum.fasta -----------------------------------------GGAGGGGGA m.16.b.E.coli.mhg.fasta -----------------------------------------GGAGGGGGA s.16.b.E.coli.schem.fasta -----------------------------------------GGAGGGGGA d.16.b.S.typhimurium.fasta -----------------------------------------GGAGGGGGA d.16.b.S.marcescens.fasta -----------------------------------------GGAGGGGGA d.16.b.E.tarda.fasta -----------------------------------------GGAGGGGGA d.16.b.P.vulgaris.fasta -----------------------------------------AGAGGGGGA d.16.b.V.cholerae4.fasta -----------------------------------------AGAGGGGGA d.16.b.V.cholerae5.fasta -----------------------------------------AGAGGGGGA d.16.b.V.cholerae2.fasta -----------------------------------------AGAGGGGGA d.16.b.V.cholerae6.fasta -----------------------------------------AGAGGGGGA d.16.b.V.cholerae.fasta -----------------------------------------AGAGGGGGA d.16.b.V.cholerae.GEN.fasta -----------------------------------------AGAGGGGGA d.16.b.V.parahaemolyticus.fast -----------------------------------------UGUGGGGGA d.16.b.H.influenzae7.fasta -----------------------------------------GGAGGGGGA d.16.b.H.influenzae8.fasta -----------------------------------------GGAGGGGGA d.16.b.H.influenzae6.fasta -----------------------------------------GGAGGGGGA d.16.b.H.influenz.fasta -----------------------------------------GGAGGGGGA d.16.b.H.influenzae.fasta -----------------------------------------GGAGGGGGA d.16.b.P.multocida.fasta -----------------------------------------GGAGGGGGA d.16.b.P.multocida.GEN.fasta -----------------------------------------GGAGGGGGA d.16.b.X.albilineans.fasta -----------------------------------------CGUGGGGGA d.16.b.X.campestris.fasta -----------------------------------------CGUGGGGGA d.16.b.X.fastidiosa.GEN.fasta -----------------------------------------CGUGGGGGA d.16.b.D.nodosus.fasta -----------------------------------------GGUGGGGGA d.16.b.F.tularensis.fasta -----------------------------------------UGAGGGGGA d.16.b.B.parapertussis.fasta -----------------------------------------AGCGGGGGA d.16.b.B.pertussis.fasta -----------------------------------------AGCGGGGGA d.16.b.B.bronchiseptica2.fasta -----------------------------------------AGCGGGGGA d.16.b.u.proteobacterium.fasta -----------------------------------------AGUGGGGGA d.16.b.B.mallei.fasta -----------------------------------------AGUGGGGGA d.16.b.Burkholderia.sp.fasta -----------------------------------------AGUGGGGGA d.16.b.N.meningitidis.MD58.GEN -----------------------------------------AGUGGGGGA d.16.b.N.meningitidis.Z2491.GE -----------------------------------------AGUGGGGGA d.16.b.N.gonorrhoeae.fasta -----------------------------------------AGCGGGGGA d.16.b.C.testosteroni.fasta -----------------------------------------AGUGGGGGA d.16.b.D.desulfuricans.fasta -----------------------------------------UGAUCGGGA d.16.b.M.xanthus.fasta -----------------------------------------UGCUCGGGA d.16.b.D.thermophilus.fasta -----------------------------------------AGACCGGGA d.16.b.B.burgdorferi.fasta -------------------------------------------------- d.16.b.B.burgdorferi.GEN.fasta -------------------------------------------------- d.16.b.B.hermsii.fasta -------------------------------------------------- d.16.b.S.aurantia.fasta -------------------------------------------------- d.16.b.T.pallidum.A.fasta -------------------------------------------------- d.16.b.L.illini.fasta -------------------------------------------------- d.16.b.L.interrogans.fasta -------------------------------------------------- d.16.b.C.trachomatis.GEN.fasta -------------------------------------------------- d.16.b.C.trachomatis.L2.fasta -------------------------------------------------- d.16.b.C.muridarum.fasta -------------------------------------------------- d.16.b.C.pneumoniae.AR39.fasta -------------------------------------------------- d.16.b.C.pneumoniae.fasta -------------------------------------------------- d.16.b.C.pneumoniae.J138.fasta -------------------------------------------------- d.16.b.C.pneumoniae.CWL029.fas -------------------------------------------------- d.16.b.C.psittaci.fasta -------------------------------------------------- d.16.b.D.radiodurans.1.fasta -------------------------------------------------- d.16.b.D.radiodurans.GEN.fasta -------------------------------------------------- d.16.b.B.fragilis.fasta -------------------------------------------------- d.16.b.P.gingivalis.fasta -------------------------------------------------- d.16.b.C.vibrioforme.fasta -------------------------------------------------- d.16.b.C.jejuni.fasta -------------------------------------------------- d.16.b.C.jejuni.GEN.fasta -------------------------------------------------- d.16.b.C.sputorum.fasta ----------------------------------------UAAUUUUUAA d.16.b.H.pylori.26695.GEN.fast -------------------------------------------------- d.16.b.H.pylori.J99.GEN.fasta -------------------------------------------------- d.16.b.H.pylori2.fasta -------------------------------------------------- d.16.b.A.capsulatum.fasta ----------------------------------------------GGAA d.16.b.H.foetida.fasta ----------------------------------------------GGAA d.16.b.A.globiformis.fasta ----------------------------------------------GGGA d.16.b.M.luteus.fasta ----------------------------------------------GGGA d.16.b.Frankia.sp.fasta ----------------------------------------------GGAA d.16.b.S.bottropensis.fasta ----------------------------------------------GGGA d.16.b.S.scabiei.fasta ----------------------------------------------GGGA d.16.b.S.neyagawaensis.fasta ----------------------------------------------GGGA d.16.b.S.diastatochromogenes.f ----------------------------------------------GGGA d.16.b.Streptomyces.sp.fasta ----------------------------------------------GGGA d.16.b.S.acidiscabies.fasta ----------------------------------------------GGGA d.16.b.S.griseus.fasta ----------------------------------------------GGGA d.16.b.S.ornatus.fasta ----------------------------------------------GGGA d.16.b.S.subrutilus.fasta ----------------------------------------------GGGA d.16.b.S.bikiniensis.fasta ----------------------------------------------GGGA d.16.b.S.galbus.fasta ----------------------------------------------GGGA d.16.b.S.hygroscopicus.fasta ----------------------------------------------GGGA d.16.b.S.lincolnensis.fasta ----------------------------------------------GGGA d.16.b.S.coelicolor.fasta ----------------------------------------------GGGA d.16.b.S.tendae.fasta ----------------------------------------------GGGA d.16.b.S.ambofaciens.fasta ----------------------------------------------GGGA d.16.b.S.eurythermus.fasta ----------------------------------------------GGGA d.16.b.S.nodosus.fasta ----------------------------------------------GGGA d.16.b.S.sampsonii.fasta ----------------------------------------------GGGA d.16.b.S.glaucescens.fasta ----------------------------------------------GGGA d.16.b.S.pseudogriseolus.fasta ----------------------------------------------GGGA d.16.b.S.caelestis.fasta ----------------------------------------------GGGA d.16.b.S.bluensis.fasta ----------------------------------------------GGGA d.16.b.S.espinosus.fasta ----------------------------------------------GGGA d.16.b.S.mashuensis.fasta ----------------------------------------------GGGA d.16.b.S.rimosus.fasta ----------------------------------------------GGGA d.16.b.S.limosus.fasta ----------------------------------------------GGGA d.16.b.S.odorifer.fasta ----------------------------------------------GGGA d.16.b.S.felleus.fasta ----------------------------------------------GGGA d.16.b.S.albidoflavus.fasta ----------------------------------------------GGGA d.16.b.S.gougerotii.fasta ----------------------------------------------GGGA d.16.b.S.rutgersensis.fasta ----------------------------------------------GGGA d.16.b.S.intermedius.fasta ----------------------------------------------GGGA d.16.b.S.thermodiastaticus.fas ----------------------------------------------GGGA d.16.b.S.thermoviolaceus.fasta ----------------------------------------------GGGA d.16.b.S.thermovulgaris.1.fast ----------------------------------------------GGGA d.16.b.S.thermovulgaris.2.fast ----------------------------------------------GGGA d.16.b.S.macrosporus.fasta ----------------------------------------------GGGA d.16.b.S.megasporus.fasta ----------------------------------------------GGGA d.16.b.S.thermolineatus.fasta ----------------------------------------------GGGA d.16.b.M.tuberculosis.2.fasta ----------------------------------------------GGGA d.16.b.M.tuberculosis.3.fasta ----------------------------------------------GGGA d.16.b.M.avium.fasta ----------------------------------------------GGGA d.16.b.M.leprae.fasta ----------------------------------------------GGGA d.16.b.M.leprae.GEN.fasta ----------------------------------------------GGGA d.16.b.M.tuberculosis.CDC1551. ----------------------------------------------GGGA d.16.b.M.tuberculosis.GEN.fast ----------------------------------------------GGGA d.16.b.N.asteroides.fasta ----------------------------------------------GGGA d.16.b.R.erythropolis.fasta ----------------------------------------------GGGA d.16.b.C.diphtheriae.fasta ----------------------------------------------GGGA d.16.b.A.israelii.fasta ----------------------------------------------UGGA d.16.b.B.hyodysenteriae.fasta ----------------------------------------------GGGA d.16.b.G.subterranea.fasta ------------------------------------------GACUGGGA d.16.b.P.miotherma.fasta ------------------------------------------GACAGAGA d.16.b.B.andersonii.fasta ------------------------------------------GACUGGGA d.16.b.H.aurantiacus.fasta ------------------------------------------GUGGGGGA d.16.b.Leptospirillium.sp.fast ------------------------------------------GAUGGGGA d.16.b.A.aeolicus.fasta ------------------------------------------GAGGGGGA d.16.b.A.pyrophilus.fasta ------------------------------------------GAGGGGGA d.16.b.T.maritima.fasta ------------------------------------------GAGGGGGA d.16.b.T.maritima.GEN.fasta ------------------------------------------GAGGGGGA n.16.b.T.thermophilus.2.num.fa ------------------------------------------GAGGGGGA s.16.b.T.thermophilus.2.schem. ------------------------------------------GAGGGGGA d.16.b.T.thermophilus.2.fasta ------------------------------------------GAGGGGGA s.16.b.T.thermophilus.1.schem. ------------------------------------------GAGGGGGA n.16.b.T.thermophilus.1.num.fa ------------------------------------------GAGGGGGA d.16.b.T.thermophilus.1.fasta ------------------------------------------GAGGGGGA d.16.b.T.aquaticus.fasta ------------------------------------------GAGGGGGA d.16.b.T.roseum.fasta ------------------------------------------GCGGGGGA d.16.b.P.marina.fasta ------------------------------------------GUUUGGGA d.16.b.P.staleyi.fasta ------------------------------------------GUCUGGGA d.16.b.P.Schlesner.fasta ------------------------------------------GACCGGGA d.16.b.G.obscuriglobus.1.fasta ------------------------------------------GUUCGGGA d.16.b.I.pallida.fasta ------------------------------------------GUUGGGCA d.16.a.P.abyssi.fasta ------------------------------------------GAGGGGGA d.16.a.P.horikoshii.fasta ------------------------------------------GAGGGGGA d.16.a.P.furiosus.fasta ------------------------------------------GAGGGGGA d.16.a.T.celer.fasta ------------------------------------------GAGGGGGA d.16.a.A.fulgidus.fasta ------------------------------------------GUGGGGGA d.16.a.N.equitans.fasta ------------------------------------------GACGGGGA d.16.a.A.pernix.K1.fasta ------------------------------------------GACGGGGA d.16.a.P.occultum.fasta ------------------------------------------GACGGGGA d.16.a.T.tenax.fasta ------------------------------------------GAGGGGGA d.16.a.S.acidocaldarius.fasta ------------------------------------------GACGGGGA d.16.a.S.solfataricus.fasta ------------------------------------------GACGGGGA d.16.a.S.solfataricus.2.fasta ------------------------------------------GAGGGAGA d.16.a.M.thermautotrophicus.1. ------------------------------------------GACCGGGA d.16.a.M.thermautotrophicus.2. ------------------------------------------GACCGGGA d.16.a.M.formicicum.fasta ------------------------------------------GACUGGGA d.16.a.M.vannielii.fasta ------------------------------------------GUGGAGCA d.16.a.H.marismortui.rrnA.fast ------------------------------------------GACCGCGA d.16.a.H.marismortui.rrnB.fast ------------------------------------------GACCGCAA d.16.a.Halobacterium.sp.fasta ------------------------------------------GACGGGAA d.16.a.N.bangense.fasta ------------------------------------------GAUCCGGA d.16.a.N.innermongoliae.fasta ------------------------------------------GAUCCAGA d.16.a.H.volcanii.fasta ------------------------------------------GAGAACGA d.16.a.M.hungatei.fasta ------------------------------------------GAGGAGGA d.16.a.P.torridus.fasta ------------------------------------------GAAGGGCA d.16.a.T.acidophilum.fasta ------------------------------------------GCGGGGCA a.16.e.G.ardeae.fasta GGCGUACA------------------GCCCCA---------CGCGU---- d.16.e.G.intestinalis.fasta GGCCCACA------------------GCCCCC---------GCCGC---- a.16.e.G.muris.fasta GGGGUAGAU-----------------GACCCC---------AGCAC---- d.16.e.A.bracteata.fasta UGCGAGGG------------------GCCUCU---------ACUG----- d.16.e.Glomus.sp.W3349.fasta UGAGUACAA-----------UUUA-AAUCCCU--------UAACGA-GGA d.16.e.S.cerradensis.fasta UGAGUACAA-----------UUUA-AAUCCCU--------UAACGA-GGA a.16.e.G.intraradices.fasta UGAGUACAA-----------UUUA-AAUCUCU--------UAACGA-GGA d.16.e.S.culisetae.fasta UGAGUACAA-----------AUUA-AA-CUCU--------UAACGA-GGA a.16.e.P.balamuthi.fasta UGAGCAGAA-----------UUCA-AACCCCU--------CUGCAA-GUA d.16.e.A.flavus.fasta UGAGUACAA-----------UCUA-AAUCCCU--------UAACGA-GGA d.16.e.T.caries.fasta UGAGUACAA-----------UUUA-AAUCCCU--------UAACGA-GGA d.16.e.M.circinelloides.fasta UGAGUACAA-----------UUUA-AAUCCCU--------UAACGA-GGA d.16.e.M.racemosus.fasta UGAGUACAA-----------UUUA-AAUCCCU--------UAACGA-GGA d.16.e.R.oryzae.fasta UGAGUACAA-----------UUUA-AAUCCCU--------UAACGA-GGA a.16.e.M.edulis.fasta UGAGUACAC-----------UUUA-AACCCUU--------UAACGA-GGA a.16.e.P.magellanicus.fasta UGAGUACAC-----------UUUA-AACCCUU--------UAACGA-GUA b.16.e.E.granulosus.fasta UGAGUGGAC-----------UCUA-AACCCCU--------UCACGA-GGA d.16.e.D.melanogaster.fasta UGAGUACAC-----------UUUA-AAUCCUU--------UAACAA-GGA b.16.e.C.koreana.fasta UGAGUACAC-----------UUUA-AAUCCUU--------UAACAA-GGA b.16.e.A.australis.fasta UGGGUACAA-----------UCUA-AACCCUU--------UAACGA-GUA b.16.e.O.utahensis.fasta UGAGUACAC-----------UUUA-AAUACUU--------UAACGA-GUA b.16.e.A.salina.fasta UGAGUACAC-----------UUUA-AAUCCUU--------UAACGA-GGA d.16.e.M.musculus.fasta UGAGUCCAC-----------UUUA-AAUCCUU--------UAACGA-GGA d.16.e.R.norvegicus.fasta UGAGUCCAC-----------UUUA-AAUCCUU--------UAACGA-GGA d.16.e.H.sapiens.fasta UGAGUCCAC-----------UUUA-AAUCCUU--------UAACGA-GGA d.16.e.O.cuniculus.fasta UGAGUCCAC-----------UUUA-AAUCCUU--------UAACGA-GGA d.16.e.X.borealis.fasta UGAGUACAC-----------UUUA-AAUCCUU--------UAACGA-GGA d.16.e.X.laevis.fasta UGAGUACAC-----------UUUA-AAUCCUU--------UAACGA-GGA d.16.e.A.castellanii.fasta UGAGUACAA-----------UUUA-AACCCCU--------UAACGA-GUA d.16.e.B.mandrillaris.fasta UGAGUACAA-----------UUUA-AAUCCCU--------UAACGA-GUA d.16.e.P.falciparum.A.fasta UGGUGGGAA-----------UUUA-AAACCUU--------CCCAGA-GUA d.16.e.P.falciparum.S.fasta UGAUAGGAA-----------UUUA-CAAGGUU--------CCUAGA-GAA d.16.e.P.vivax.A.fasta UGAUGGGAA-----------UUUA-AAACCUU--------CCCAAA-ACU d.16.e.P.vivax.O.fasta UGGUGUGCGGGGGGGGUGGUUUUA-UCCUUCU--------CCCAAA-ACA d.16.e.P.vivax.S.fasta UGAUGGGAA-----------UUUA-AAUCCUU--------CCCAUA-AUA d.16.e.E.histolytica.fasta GAGUAGGAG-------------GU-AAAUUCU--------CCUACG-AAA d.16.e.I.hoferi.fasta UGAGUACAA-----------UUUA-AACCCCU--------UAACGA-GGA d.16.e.Dermocystidium.sp.fasta UGAGAACAA-----------UUUA-AACCCCU--------UAACGA-GGA d.16.e.S.destruens.fasta UGAGUACAA-----------UGUA-AAAACCU--------UAACGA-GGA d.16.e.A.unguiculata.fasta UGAGUACAA-----------UCUA-AAUCUCU--------UAACGA-GUA d.16.e.D.grandis.fasta UGAGUACAA-----------UCUA-AAUCUCU--------UAACGA-GUA d.16.e.A.macrogynus.fasta UGAGUACAA-----------UUUA-AAUCCCU--------UAACGA-GGA d.16.e.B.emersonii.fasta UGAGUACAA-----------UUUA-AAUCCCU--------UAACGA-GGA d.16.e.C.albicans.fasta UGAGUACAA-----------UGUA-AAUACCU--------UAACGA-GGA d.16.e.S.cerevisiae.fasta UGAGUACAA-----------UGUA-AAUACCU--------UAACGA-GGA d.16.e.N.crassa.fasta UGAGUACAA-----------UUUA-AAUCCCU--------UAACGA-GGA d.16.e.P.anserina.fasta UGAGUACAA-----------UUUA-AAUCCCU--------UAACGA-GGA d.16.e.C.immitis.fasta UGAGUACAA-----------UUUA-AAUCCCU--------UAACGA-GGA d.16.e.L.major.fasta UGGGGGAUA-----------UUUA-AACCCAUC----CAAUAUCGA-GUA d.16.e.T.cruzi.fasta UGGGGGAUA-----------UUUA-AACCCAUC----CAAAAUCGA-GUA d.16.e.T.brucei.fasta UGGGGGAUA-----------CUCA-AACCCAUC----CAAUAUCGA-GUA d.16.e.P.carinii.fasta UGAGUACAA-----------UUUA-GAUACCU--------UAACGA-GGA d.16.e.C.neoformans.fasta UGAGUACAA-----------UUUA-AAUCCCU--------UAACGA-GGA d.16.e.Fungus.sp.QPX.fasta UGAGUACAA-----------UUUA-AAUCCCU--------UAACGA-GGA d.16.e.U.maydis.fasta UGAGUACAA-----------UUUA-AAUCCCU--------UAACGA-GGA d.16.e.M.leidyi.fasta UGAGUACAA-----------UAUA-ACACCCU--------UAACGA-GGA d.16.e.T.cystophora.fasta UGAGUACAA-----------UUUA-AAUCCUU--------UAACGA-GGA d.16.e.M.prolifera.fasta UGAGUACAA-----------UCUA-AACCCCU--------UAACGA-GGA d.16.e.P.haeckeli.fasta UGAGUACGA-----------UUUA-AACCCUU--------UAACGA-GGA d.16.e.E.rotunda.fasta UGAGUACAA-----------UUUA-AAUCCCU--------UAACGA-GGA d.16.e.P.chromatophora.fasta UGAGUGUAA-----------UUUA-AAUCCCU--------AUGCGA-GGA d.16.e.A.majus.fasta UGAGUACAA-----------UCUA-AAUCCCU--------CAACGA-GGA d.16.e.S.indicum.fasta UGAGUACAA-----------UCUA-AAUCCCU--------UAACGA-GGA d.16.e.D.grandiflora.fasta UGAGUACAA-----------UCUA-AAUCCCU--------UAACGA-GGA d.16.e.Pla.lanceolata.fasta UGAGUACAA-----------UCUA-AAUCCCU--------UAACGA-GGA d.16.e.N.tabacum.fasta UGAGUACAA-----------UCUA-AAUCCCU--------UAACGA-GGA d.16.e.A.thaliana.fasta UGAGUACAA-----------UCUA-AAUCCCU--------UAACGA-GGA d.16.e.S.alba.fasta UGAGUACAA-----------UCUA-AAUCCCU--------UAACGA-GGA d.16.e.S.tuberosum.fasta UGAGUACAA-----------UCUA-AAUCCCU--------UAACGA-GGA d.16.e.F.x.ananassa.fasta UGAGUACAA-----------UCUA-AAUCCCU--------UAACGA-GGA d.16.e.G.max.fasta UGAGUACAA-----------UCUA-AAUCCCU--------UAACGAUGGA d.16.e.O.sativa.fasta UGAGUACAA-----------UCUA-AAUCCCU--------UAACGA-GGA d.16.e.Z.mays.fasta UGAGUACAA-----------UCUA-AAUCCCU--------UAACGA-GGA d.16.e.A.verticilliflorum.fast UGAGUACAA-----------UCUA-AAUCCCU--------UAAUGA-GGA d.16.e.G.spirotaenia.fasta UGAGUACAA-----------UCUA-AAUCCCU--------UAACGA-A-A d.16.e.Staurastrum.sp.M752.fas UGAGUACAA-----------UCUA-AAUCCCU--------UAACGA-GGA d.16.e.C.paradoxa.fasta UGAGAACAA-----------UUUA-AAUCCCU--------UAUCGA-GGA d.16.e.G.nostochinearum.fasta UGAGAACAA-----------UUUA-AAUCCCU--------UAUCGA-GGA d.16.e.G.wittrockiana.fasta UGAGAACAA-----------UUUA-AAUCUCU--------UAUCGA-GUA d.16.e.C.luteoviridis.fasta UGAGUACAA-----------UUCA-AAAUCCU--------UAACGA-GGA d.16.e.O.longa.fasta UGAGUAGAA-----------UUUA-AACCCCU--------UUACGA-GGA d.16.e.P.weissei.fasta UGAGUAGAA-----------UUUA-AACCCCU--------UUACGA-GGA d.16.e.C.citrina.fasta UGAGUAGAA-----------UUUA-AACCCCU--------UUACGA-GGA d.16.e.G.steinii.fasta UGAGUAGAA-----------UUUA-AACCCCU--------UUACGA-GGA d.16.e.Ple.lanceolata.fasta UGAGUAGAA-----------UUUA-AACCCCU--------UUACGA-GGA d.16.e.O.quadricornutus.fasta UGAGUAGAA-----------UUUA-AACCCCU--------UUACGA-GGA d.16.e.S.lemnae.fasta UGAGUAGAA-----------UUUA-AACCCCU--------UUACGA-GGA d.16.e.S.mytilus.fasta UGAGUAGAA-----------UUUA-AACCCCU--------UUACGA-GGA d.16.e.E.mobilis.fasta UGAGUAGAA-----------UUUA-AACCCCU--------UUGCGA-GGA d.16.e.O.granulifera.1.fasta UGAGUAGAA-----------UUUA-AACCCCU--------UUACGA-GGA d.16.e.O.granulifera.2.fasta UGAGUAGAA-----------UUUA-AACCCCU--------UUACGA-GGA d.16.e.U.gallina.fasta UGAGUAGAA-----------UUUA-AACCCCU--------UUACGA-GGA d.16.e.U.pisces.fasta UGAGUAGAA-----------UUUA-AACCCCU--------UUACGA-GGA d.16.e.P.lepisma.fasta UGAGUAGAA-----------UUUA-AACCCCU--------UUACGA-GGA d.16.e.U.grandis.fasta UGAGUAGAA-----------UUUA-AACCCCU--------UUACCA-GGA d.16.e.B.coli.fasta UGAGGGUAU-----------UCCA-AACCGAA--------CCACUA-GUA d.16.e.E.aediculatus.fasta UGGGCUUGA-----------UUUGCAAACACU--------UAGCGA-GGA d.16.e.T.thermophila.fasta UGAGAACAG-----------UGUA-AAUCUCU--------UAGCGA-GGA d.16.e.Bangia.sp.NWT.fasta UGAGAACAA-----------UUUA-AAUCCCU--------UAUCGA-GGA d.16.e.Bangia.sp.VIS7.fasta UGAGAUGAU-----------UCCA-AACCCCU--------UAUCGA-GGA d.16.e.E.carnea.fasta UGAGUACAA-----------UUUA-AAUCCCU--------UAACGA-GGA d.16.e.R.parvula.fasta UGAGUACAA-----------UUUA-AAUCCCU--------UAACGA---A d.16.e.C.coeruleus.fasta UGAGUACAA-----------UUUA-AAUCUCU--------UAACGA-GUA d.16.e.P.aerugineum.1.fasta YGAGUACAU-----------UUUA-AAUCACU--------UAACGA-GUA d.16.e.R.maculata.fasta UGAGUACAA-----------UUUA-AAAUUGU--------UAACGA-GUA d.16.e.A.ambigua.fasta UGAGAACGA-----------UGCA-AASACCC--------UAUCGA-GGA d.16.e.A.baicalensis.fasta UGAGAACGA-----------UGCA-AAUACCC--------UAUCGA-GGA d.16.e.S.nipponica.fasta UGAGAACGA-----------UGUA-AACACCC--------UAUCGA-GGA d.16.e.C.radiatus.fasta UGAGAACAA-----------UUUA-AAUCCCU--------UAUCAA-GGA d.16.e.C.criophilum.fasta UGAGAGCAA-----------GUUA-AAUCGAU--------CAUCGA-GGA d.16.e.A.capitellata.fasta UGAGAACAA-----------UUUA-AACCCCU--------UAUCGA-GGA d.16.e.S.pupula.fasta UGAGAACAA-----------UUUA-AACCCCU--------UAUCGA-GGA d.16.e.T.antarctica.fasta UGAGAACAA-----------UUUA-AACCCCU--------UAUCGA-GUA d.16.e.E.triangulatum.fasta UGAGAACAA-----------UUCA-AACCACU--------UAUCGA-GGA d.16.e.A.bongranii.fasta UGAGAACAA-----------UUUA-AAUCCCU--------UAUCGA-GGA d.16.e.Pseudogomphonema.sp.fas UGAGAACAA-----------UUUA-AAUCCCU--------UAUCGA-GGA d.16.e.D.tenue.fasta UGAGAACAA-----------UUUA-AACCCCU--------UAUCGA-GUA d.16.e.G.marina.fasta UGAGAACAA-----------UUUA-AAUCCCU--------UAUCGA-GGA d.16.e.Thalassionema.sp.fasta UGAGAACAA-----------UCUA-AACCCCU--------UAUCGA-GGA d.16.e.R.belgicae.fasta UGAGAACAA-----------UUUA-AAUCCCU--------UAUUSA-GGA d.16.e.Undatella.sp.fasta UGAGAACAA-----------UUUA-AAUCCCU--------UAUCGA-GGA d.16.e.C.belgica.fasta UGAGAACAA-----------UUUA-AAUCCCU--------UAUCGA-GGA d.16.e.O.sinensis.fasta UGAGAACAA-----------UUUA-AAUCCCU--------UAUCGA-GGA d.16.e.D.brightwellii.fasta UGAGAACGA-----------UUUA-AAUCCCC--------UAUCGA-GGA d.16.e.L.undulatum.fasta UGAGAACGA-----------UUUA-AAUCCCC--------UAUCGA-GGA d.16.e.T.eccentrica.fasta UGAGAACAA-----------UUUA-AAUCCCU--------UAUCGA-GUA d.16.e.T.pseudonana.fasta UGAGAACAA-----------UUUA-AAUCCCU--------UAUCGA-GUA d.16.e.S.costatum.fasta UGAGAACAA-----------UUUA-AAUCCCU--------UAUCGA-GUA d.16.e.P.laevis.fasta UGAGAACAA-----------UUUA-AAUCCCU--------UAUCGA-GGA d.16.e.L.borealis.fasta UGAGAACAA-----------UUUA-AAUCCCU--------UAUCAA-GUA d.16.e.P.pseudodenticulata.fas UGAGAACAA-----------UUUA-AAUCCCU--------UAUCGA-GUA d.16.e.B.mediterranea.fasta UGAGAACAA-----------UUUA-AAUCCCU--------UAUCGA-GGA d.16.e.B.pacifica.fasta UGAGAACAA-----------UUUA-AAUCCCU--------UAUCGA-GGA d.16.e.L.minuta.fasta UGAGUACAA-----------UCUA-AAUCCCU--------UAACGA-GGA d.16.e.L.danicus.fasta UGAGAACAA-----------UUUA-AACACCU--------UAACGA-GGA d.16.e.Chaetoceros.sp.fasta UGAGAGAAA-----------CACA-GAAUCCA--------CAUCGA-GGA d.16.e.A.invadans.fasta UGAGAACAA-----------UUUA-AAUCCCU--------UAACGA-GGA d.16.e.L.giganteum.fasta UGAGAACAA-----------UUUA-AAUCCCU--------UAUCGA-GGA d.16.e.M.varians.fasta UGAGAACGA-----------UGUA-AACAUCC--------UAUCAA-GGA d.16.e.B.hominis.fasta UGAGAACAA-----------UGUA-CAACUCU--------UAUCGA-UAA d.16.e.P.marinus.fasta UGAGUAGAU-----------UUUA-AAUCUCU--------UUACGA-GUA d.16.e.T.gondii.fasta UGAUAGGAA-----------UCCA-AACCCCU--------UUCAGA-GUA d.16.e.A.fundyense.fasta UGAAUGGAU-----------UUUA-AACCUUU--------CUAUAA-GUA d.16.e.B.bigemina.fasta UGAUGGUGA-----------UGUA-CAACCUC--------ACCAGA-GUA d.16.e.B.canis.fasta UGAUGGUGA-----------CUUA-AACCCUC--------ACCAGA-GUA d.16.e.Babesia.sp.OKD.fasta UGAUGGUGA-----------CGUA-AAAUCUC--------ACCAGA-GUA d.16.e.B.microti.1.fasta UGAUGGGAA-----------UCUA-AACCCUU--------CCCAGA-GUA d.16.e.B.microti.2.fasta UGAUGGGAA-----------UCUA-AACCCUU--------CCCAGA-GUA d.16.e.B.microti.3.fasta UGAUGGGAA-----------UCUA-AACCCUU--------CCCAGA-GUA d.16.e.B.microti.4.fasta UGAUGGGAA-----------UCUA-AACCCUU--------CCCAGA-GUA d.16.e.B.microti.5.fasta UGAUGGGAA-----------UCUA-AACCCUU--------CCCAGA-GUA d.16.e.B.rodhaini.fasta UGAUGGGAA-----------UCUA-AACCCUU--------CCCAGA-GUA d.16.e.B.gibsoni.fasta UGAUGGGAA-----------UCCA-AACCCCU--------UCCAGA-GUA d.16.e.B.bovis.fasta UGGGGGCGA-----------CCUU-CACCCUC--------GCCCGA-GUA d.16.e.J.libera.fasta UGAGGACAA-----------UUUA-GAAACCU--------UAUCGA-GUA d.16.e.R.americana.fasta UGAGGUGUA-----------UUUA-AAACCCA--------CACCGA-GUA d.16.e.B.ostreae.fasta UGAGAACAA-----------UGUAAAAACCUU---------AUCGA--AU d.16.e.A.dasyae.fasta UGAGAACAA-----------GGUA-AACAGCU--------UAUCGA-GGA d.16.e.A.hermannii.fasta UGAGAACAA-----------GGUA-AACAGCU--------UAUCGA-GGA d.16.e.N.helminthoides.fasta UGAGAACAA-----------GGUA-AACAGCU--------UAUCGA-GGA d.16.e.B.gelatinosum.fasta UGAGAACAA-----------GGUA-AACAGCU--------UAUCGA-GGA d.16.e.N.tortuosa.fasta UGAGAACAA-----------GGUA-AACAGCU--------UAUCGA-GGA d.16.e.T.hispida.fasta UGAGAACAA-----------GGUA-AACAGCU--------UAUCGA-GGA d.16.e.T.violacea.4.fasta UGAGAACAA-----------GGUA-AACAGCU--------UAUCGA-GGA d.16.e.T.violacea.1.fasta UGAGAACAA-----------GGUA-AACAGCU--------UAUCGA-GGA d.16.e.T.violacea.2.fasta UGAGAACAA-----------GGUA-AACAGCU--------UAUCGA-GGA d.16.e.N.shawii.fasta UGAGAACAA-----------GGUA-AACAGCU--------UAUCGA-GGA d.16.e.B.investiens.fasta UGAGAACAA-----------GGUA-AACAGCU--------UAUCGA-GGA d.16.e.B.macrosporum.fasta UGAGAACAC-----------GGUA-AACAGCU--------UAUCGA-GGA d.16.e.A.plicata.fasta UGAGAACAA-----------GGUA-AAUAGCU--------UAUCGA-GGA d.16.e.C.officinalis.fasta UGAGAACAA-----------GCUA-AACAGCU--------UAUCGA-GAA d.16.e.R.carriebowensis.fasta UGAGAACAA-----------GGUA-AACAGCU--------UAUCGA-GGA d.16.e.B.hamifera.fasta UGAGAACAA-----------GGUA-AACAGCU--------UAUCGA-GGA d.16.e.G.vagum.fasta UGAGAACAA-----------GGUA-AACAGCU--------UAUCGA-GGA d.16.e.C.crispus.fasta UGAGAACAA-----------GGUA-AACAGCU--------UAUCGA-GGA d.16.e.H.plana.fasta UGAGAACAA-----------GGUA-AACAGCU--------UAUCGA-GGA d.16.e.R.leptophylla.fasta UGAGAACAA-----------GGUA-AACAGCU--------UAUCGA-GGA d.16.e.P.pulvinata.fasta UGAGAACAA-----------GGUA-AACAUCU--------UAUCGA-GUA d.16.e.C.rubrum.fasta UGAGAACAC-----------GGUA-AACAUCU--------UAUCGA-GGA d.16.e.Gracilariopsis.sp.fasta UGAGAACAA-----------GAUA-AACAGCU--------UAUCGA-GGA d.16.e.B.moritziana.fasta UGAAAACAA-----------UGUA-AACUCCU--------UAUUGA-GGA d.16.e.H.rubra.fasta UGAGUACAG-----------AGUA-AACAAUU--------UAACGA-GGA d.16.e.D.grisea.fasta UGAGAGAAA-----------UUUA-AAUAUGU--------CAACGA-UGA d.16.e.N.fowleri.fasta AAUUUUCCAUGAUUUGGGUGUAGAUAACCCUU-----------AGA-GCA d.16.e.N.gruberi.fasta GAUUUUCCAUGAUUUGGGUGUAGAUAACCCUU-----------AGA-GUA a.16.e.Hexamita.sp.fasta UGAGCGAG-----------GCGCACACACCCU---------CGCGA--AC d.16.e.T.foetus.fasta UAGGAUUGC----------ACUUUUCCAGUGC---------AGUGA--AA d.16.e.A.khaliulini.fasta UGUUUAAAU----------------AGCAUA-----------UCGA---A d.16.e.E.aedis.fasta UGUGUAAAG----------------AGCAUA-----------CUGA---A d.16.e.A.connecticus.fasta UGUAUAAAC----------------AGCACA-----------CCGA---A d.16.e.I.barri.fasta UGUGUAAAC----------------AGCAUU-----------UCAA---A d.16.e.A.ferocious.fasta UGAAUAAAA----------------UACACU-----------CAUA---A d.16.e.Amblyospora.sp.fasta UGUCUUAAA----------------AGCAGGG----------UUAA---G d.16.e.C.lunata.fasta UGAUUUCAA----------------AUCAUGC----------ACGA---C d.16.e.P.anophelis.fasta AGAGUAAAG----------------AACUUAA----------CGAG---A d.16.e.Hazardia.sp.fasta AGUGCAAAC----------------AGCUGGC----------CGAA---A d.16.e.H.milleri.fasta AGUGCAAAU----------------AGCUGGC----------CGAA---A d.16.e.P.simulii.fasta AGUGUAAAC----------------GCCUGCU----------CGAG---A d.16.e.W.palustris.fasta AGAGCAAAU----------------AUCUGCC----------CGAG---A d.16.e.Nosema.sp.03.fasta UGUAAGUAC----------------AUAUUAC----------AAG----A d.16.e.Nosema.sp.05.fasta UGUAAGUAC----------------AUAUUAC----------AAG----A d.16.e.Endoreticulatus.sp.fast UGUAAGUAC----------------AUAUUAC----------AAG----A d.16.e.Nosema.sp.02.fasta UGUAAGUAC----------------AUAUUAC----------AAG----A d.16.e.N.spodopterae.fasta UGUAAGUAC----------------AUAUUAC----------AAG----A d.16.e.N.trichoplusiae.fasta UGUAAGUAC----------------AUAUUAC----------AAG----A d.16.e.N.bombycis.27.fasta UGUAAGUAC----------------AUAUUAC----------AAG----A d.16.e.N.bombycis.02.fasta UGUAAGUAC----------------AUAUUAC----------AAG----A d.16.e.V.imperfecta.fasta UGUAAGUAC----------------AUAUUAC----------AAG----A d.16.e.N.furnacalis.fasta UGUAAGUAU----------------AUACUAC----------AAG----A d.16.e.Microsporidium57864.fas UUUAAAAGU----------------AUAUGAG----------GUG----A d.16.e.Vairimorpha.sp.C21.fast UGUAAAAGU----------------AUAUGAG----------GUG----A d.16.e.N.oulemae.fasta UGUAAAAGU----------------AUAUGAG----------GUG----A d.16.e.N.necatrix.fasta UGUAAAAGU----------------AUAUGAG----------GUG----A d.16.e.V.necatrix.fasta UGUAAAAGU----------------AUAUGAG----------GUG----A d.16.e.N.apis.fasta UUUAAACGU----------------AUGUGAG----------CAG----A d.16.e.O.occidentalis.fasta UUUAAACGU----------------AUAUGAG----------GUG----A d.16.e.Microsporidium.sp.DP119 UAAAAUAAU----------------UUAUUUU----------AUG----- d.16.e.V.corneae.fasta UGUAAAGAG----------------GGAUAGG----------AG------ d.16.e.A.michaelis.fasta AGCAAGUAU-----------------UAUU-------------------- d.16.e.T.contejeani.fasta UCCUUGUAA----------------AUAUAGG----------AAAU---G d.16.e.E.hellem.fasta --UAAAUUU----------------GUUGUGA----------UUU----- d.16.e.Encephalitozoon.sp.fast --UAAAGGA----------------GUCGAGA----------UUG----- d.16.e.E.cuniculi.fasta --CAAAGGG----------------GUCGCAU----------GUG----- d.16.e.O.colligata.fasta GAUGAAAGA----------------GUCAGUG----------GAU----- d.16.e.E.salmonis.fasta UGUAAACAC----------------CUUCGUG----------UAA----C d.16.e.N.salmonis.fasta UGUAAACAC----------------CUUCGUG----------UAA----C d.16.e.Enterocytozoonidae.sp.f UGUAAAAUA----------------CUCUGUG----------UAA----U d.16.e.E.bieneusi.fasta UGUAAAGAC----------------CUUAGGG----------UGA----A d.16.e.B.algerae.fasta CCUUGUUAG----------------ACAUGGU----------CCAU---A d.16.e.T.solenopsae.fasta CUUCAUUAA----------------AGAUGGU----------UA-----A d.16.e.V.acridophagus.fasta GAUCAAUAA----------------AUCAGAU----------UU-U---U d.16.e.Bacillidium.sp.fasta UACAUUAAA----------------AUAGUAC----------UGA----A d.16.e.P.cristatellae.fasta UACGGUAAA----------------AUAGUAC----------AGG----A d.16.e.Pleistophora.sp.fasta GGUAAAGAG----------------AAGCAGG----------AGA----- d.16.e.O.operophterae.fasta UGUAAAGAC----------------GUGCGCG----------AAC----- d.16.e.F.magnivora.fasta CGGGGUAGA----------------AUACCGG----------UGA----- d.16.e.G.atherinae.fasta CGGGCAAAA----------------AACGCAC----------UAGA---U d.16.e.Ichthyosporidium.sp.fas CAGGUAAAG----------------AAUGCAC----------UGUA---U d.16.e.L.acerinae.fasta CUAGCAAAG----------------AAAGCAC----------UGAC---A d.16.e.H.anguillarum.fasta GAGGUAAAG----------------AAUGCUC----------UGGU---A d.16.e.P.mirandellae.fasta CAGGUAAAU----------------AAUGCAC----------UAGU---A d.16.e.T.hominis.fasta CAGGUAAAA----------------UAUGCAC----------UGGU---A d.16.e.V.culicis.fasta CAGGUAAAA----------------UAUGCAC----------UGGU---A d.16.e.P.hippoglossoideos.fast CAGGUAAAG----------------AAUGCAC----------UAGU---A d.16.e.Microgemma.sp.fasta UGUGUAAAA----------------AGCACGC----------GAGU---A d.16.e.S.lophii.fasta UGUGUAAAA----------------ACCACAU----------GAGU---A d.16.e.Pleistophora.sp.LS.fast CGGGUAAAG----------------GACGCUU----------UAGC---A d.16.e.D.gammarellum.fasta CGGGUAAAG----------------AACGUAC----------UAUA---A d.16.e.M.prosopium.fasta CUGAUAAAA----------------GAGGUAG----------UAGU---G d.16.e.A.scoticae.fasta AGCACGGCA----------------AAGGAGU----------GCGU---A d.16.e.P.whitei.fasta CGCACGGCA----------------AAGGAGU----------GCGG---G a.16.c.C.coccineum.fasta GAAAAU--ACCCCGUUA-GCUGAGGAGCA---AUAGGAGG---------- a.16.c.C.ruber.fasta GCUAAU--ACCCCAUAG-ACUGAGGAGUA---AAAGGAGG---------- d.16.c.N.tabacum.fasta GCUAAU--ACCCCGUAG-GCUGAGGAGCA---AAAGGAGG---------- d.16.c.S.oleracea.fasta GCUAAU--ACCCCGUAG-GCUGAGAAGCA---AAAGGAGG---------- d.16.c.Z.mays.fasta GCUAAU--ACCCCGUAG-GCUGAGGAGCA---AAAGGAGA---------- d.16.c.M.polymorpha.fasta GCUAAU--ACCCCAUAG-GCUGAGGAGCA---AAAGGAGG---------- d.16.c.R.communis.fasta GCUAAU--ACCCCGUAG-GCUGAGGAGCA---AAAGGAGG---------- d.16.c.C.vulgaris.fasta GCUAAU--ACCUCGUAUUGCUGAGAAGUG---AAAGAUGA---------- d.16.c.P.wickerhamii.fasta GCUAAU--ACCUUAUAUUGCUGAGAAGUG---AAAAAUGU---------- d.16.c.P.minor.fasta GCUAAU--ACUCCAUAU-GCUGAGGAGUA---AAAGGUCG---------- d.16.c.N.olivacea.fasta GCUAAU--ACCCCGUAG-GCUGAGGAGUG---AAACGGGA---------- d.16.c.P.parkeae.fasta GCUAAU--ACCCUAUAA-GCUGAGGAGUG---AAAUCGAAUUUUUAUAAU d.16.c.C.reinhardtii.fasta GCUAAU--ACCCCAUACAGCUGAGGAGUG---AAAGGUGA---------- b.16.m.A.castellanii.fasta AGUAGU--A--UAG-------GAGAAUUG---AAGUGUGGGUUAG----- d.16.c.P.thurberi.fasta AUAAAU--U--AAA-------GUAAGGCG---AA---CGGGUGAG----- b.16.m.C.crispus.fasta AGUAAU--G--CAU-------AAAAAUUA---AC-----CUUAAA----- d.16.c.T.gondii.fasta UUUAUU--UUUAGA-------AUAUAAUA---AAAAUUUAAUAAU----- b.16.m.N.crassa.fasta GGGUGU--UUUAGGGGAACUUGUGCCCCU---AAAACCUCUUAA------ b.16.m.P.anserina.fasta UAUU-U--AUAAGGUUAAUCUCUCUAAAG---GGGUUUUUUUAA------ b.16.m.P.chrysogenum.fasta ----------------------------------------UUAA------ b.16.m.E.nidulans.fasta -------------------------------------------A------ b.16.m.S.cerevisiae.fasta ACUUAA--UAUA-U-----UAU-UAUAUA---AAAAUAAUUUAU------ b.16.m.W.saturnus.m.fasta AAUAAA--UAGAAU-----UAG-AACUAA---UAUAUCUUUUAA------ b.16.m.P.minor.fasta --UAAA--UUUGGC-----UCU-AGUUUG---AAAAUAAAUUUU------ d.16.c.P.falciparum.fasta UUUAAA--UAGAUUAUAAAUUU-UAUUAA---AUAAUAAUCUAU------ d.16.c.B.bovis.fasta UAUAAG--UGUGCAUUUUAUGUGUGUUUA---UACUAAUUCUCU------ b.16.m.T.pyriformis.fasta UUUAAG--CCUA-------UUUAAA-UAA---UAGUUAAUUUUA------ d.16.m.S.sinuspaulianus.fasta UGCA-----UUA-------UAUAAAAUUA---UAAUUGUUUUUC------ b.16.m.P.tetraurelia.fasta CUUAGA--UAGGCUAGGUUUUCUUCCUUU---UAAGAAGUUUAA------ b.16.m.D.discoideum.fasta AAUAAU--UUUGGG--------AAUAAAA---GAAGAAAUCCAG------ d.16.m.P.polycephalum.fasta GCUGAA--UGUAAG------GUCUUUGUG---AGAUUAGGUUGU------ b.16.m.P.littoralis.fasta UCU-----------------------UGG---AUAAUCCUAUCC------ b.16.m.P.wickerhamii.fasta AUUACG--UUAGAA--------UCGUGGA---UAAGUAUUUUAUG----- d.16.c.H.africana.fasta UUUAAG--AAGGAAAUAACAAAUAACAAA---UGGAAACAUUUGC----- d.16.c.C.fragile.fasta GUAAAG--AAUAAC--------AAUUGGA---AACGAUUGCUAA------ d.16.c.C.sertularioides.fasta GACGAG--AAUAAC--------UUUUGGA---AACGAAAGCUAA------ d.16.c.C.humicola.fasta -------------------------------------------------- d.16.c.P.uvella.fasta GUGAUU--AAUUAAAUAUAAGAGUUUAAC---UUAAUAAUUAAAU----- a.16.c.G.nostochinearum.fasta GAAGAG--AACAAUAGGACUCUUUUCGCC---GAAAGGUCUGCUAAU--- a.16.c.G.wittrockiana.fasta UAGGAA--UGCAA----GUUCCUUGUGUC---GAAAGAUCUGCUAAU--- d.16.c.C.paradoxa.fasta UUGGAA---ACGA-----CUGCUAAUACC---CCA---UAUGCCAUU--- d.16.y.C.paradoxa.fasta UUGGAA---ACGA-----CUGCUAAUACC---CCA---UAUGCCAUU--- d.16.c.Cryptomonas.sp.fasta CUGGAA---ACGG-----CUGCUAAUACU---CCA---UAUGCUGA---- d.16.c.P.palmata.fasta UUGGAA---ACGA-----UUGCUAAUGCC---CCA---UAAGCUGA---- d.16.c.H.akashiwo.fasta UUGGAA---ACGA-----AUGCUAAUACC---UUA---UAUGCCUAU--- d.16.c.S.pseudocostatum.fasta UUGGAA---ACAA-----AUGCUAAUACC---CCA---UAUGCUU----- d.16.c.P.littoralis.fasta UUGGAA---AUGA-----CUGCUAAUGCC---GCA---UAUCGUAAU--- d.16.c.C.caldarium.fasta UUGGAA---ACGA-----UUGCUAAAACC---CCA---UAUGCC------ a.16.c.E.huxleyi.fasta CUGGAA---ACGG-----UAGCUAAGUCU---UCA---UAUGCCGA---- d.16.c.E.gracilis.fasta AUGGAA---ACGU-----UUGCUAAUGCC---UCAUAAUUUACUAGA--- d.16.b.Anabaena.sp.fasta ACUGGA--AACGGU-----GGCUAAUACC---GGAUGUGCCGAA------ d.16.b.Chlorogloeopsis.PCC7518 ACUGGA--AACGGU-----GGCUAAGACC---GGAUGUGCCGGG------ d.16.b.Synechococcus.sp.fasta GUUGGA--AACGAC-----UGCUAAUACC---CGAUGUGCCGAG------ d.16.b.Synechocystis.PCC6803.G GUUGGA--AACGAC-----UGCUAAUACC---CAAUGUGCCGAA------ d.16.b.O.agardhii.fasta GUUGGA--AACGAC-----UGCUAAACCC---GGAUGAGCCGAA------ d.16.b.Pleurocapsa.7516.fasta GUUGGA--AACGAC-----UGCUAAUACC---CAAUAUGGCGAG------ d.16.b.M.aeruginosa.fasta GUUGGA--AACGAC-----UGCUAAUACC---CGAUGUGCCGCG------ b.16.m.C.reinhardtii.fasta CAU-CG--GGCAAAAC--------UCGCG---UAGGA-----UUAGCG-- d.16.m.C.eugametos.fasta AAU-UA--UUGGGAAC--------UCGCA---UUGGA-----UUAGAU-- b.16.m.M.senile.fasta AAU-CC--AAAGUGCU--------GGGCC---GGAGU-----CUUAUU-- d.16.b.S.pneumoniae.fasta UAU-UG--GAAACGAUAGCUAAUACCGCA---UAAGA-----GUAGAU-- d.16.b.S.pyogenes.fasta UNU-UG--GAAACGAUAGCUAAUACCGCA---UAAGA-----GAGACU-- d.16.b.B.anthracis.fasta AAC-UC--CGGGAAACCGGGGCUAAUACC---GGAUAACAUUUUGAAC-- d.16.b.B.cereus.1.fasta AAC-UC--CGGGAAACCGGGGCUAAUACC---GGAUAACAUUUUGAAC-- d.16.b.E.faecalis.fasta AAC-AC--UUGGAAACAGGUGCUAAUACC---GCAUAACAGUUUAUGC-- d.16.b.E.faecium2.fasta AAC-AC--UUGGAAACAGGUGCUAAUACC---GUAUAACAAUCGAAAC-- d.16.b.L.monocytogenes.fasta AAC-UC--CGGGAAACCGGAGCUAAUACC---GAAUGAUARARUGUGG-- d.16.b.B.subtilis.fasta AAC-UC--CGGGAAACCGGGGCUAAUACC---GGAUGGUUGUUUGAAC-- d.16.b.B.subtilis.GEN.fasta AAC-UC--CGGGAAACCGGGGCUAAUACC---GGAUGGUUGUUUGAAC-- d.16.b.B.halodurans.fasta AAC-AU--CGAGAAAUCGGUGCUAAUACU---GGAUAAUAAAAAGAAC-- d.16.b.S.aureus.fasta AAC-UU--CGGGAAACCGGAGCUAAUACC---GGAUAAUAUUUUGAAC-- d.16.b.S.aureus.GEN.fasta AAC-UU--CGGGAAACCGGAGCUAAUACC---GGAUAAUAUUUUGAAC-- d.16.b.L.lactis.GEN.fasta AAC-AU--UUGGAAACGAAUGCUAAUACC---GCAUAAAAACUUUAAA-- d.16.b.S.pyogenes.GEN.fasta AAC-UA--UUGGAAACGAUAGCUAAUACC---GCAUAAGAGAGACUAA-- d.16.b.L.acidophilus.fasta ACC-AC--UUGGAAACAGGUGCUAAUACC---GGAUAAGAAAGCAGAU-- d.16.b.M.capricolum.fasta AAC-UU--UUGGAAACGAAAGAUAAUACC---GCAUGUAGAUCUUAUU-- d.16.b.M.mycoides.fasta AAC-UU--UUGGAAACGAAAGAUAAUACC---GCAUGUAGAUCUUAUU-- d.16.b.E.rhusiopathiae.fasta AAC-AG--AGGGAAACUUCUGCUAAUACC---GGAUACG--UUAAUCU-- d.16.b.C.innocuum.fasta AAC-UG--CUGGAAACGGUAGCUAAAACC---GGAUAGG--UAUACGG-- d.16.b.M.genitalium.fasta AAC-UA--GUUGAAAAACUAGCUAAUACC---GCAUAAGAACUUUAGU-- d.16.b.M.pneumoniae.GEN.fasta AAC-UA--GUUGAAAGACUAGCUAAUACC---GCAUAAGAACUUUGGU-- d.16.b.M.pneumoniae.fasta AAC-UA--GUUGAAAGACUAGCUAAUACC---GCAUAAGAACUUUGGU-- d.16.b.M.gallisepticum.fasta AAC-UA--GUCGAAAGAUUAGCUAAUACC---GCAUAACAAGUUAACUA- d.16.b.U.urealyticum.fasta AAC-UA--GUCGAAAGAUUAGCUAAUACC---GAAUAAUAACAUCAAUA- d.16.b.U.urealyticum.GEN.fasta AAC-UA--GUCGAAAGAUUAGCUAAUACC---GAAUAAUAACAUCAAUA- d.16.b.M.hyopneumoniae.fasta AAC-CA--UUGGAAACAGUGGCUAAUACC---AGAUA-UGAUAAAAAU-- d.16.b.F.necrophorum.fasta AAC-AU--CUGGAAACGGAUGCUAAUACC---GGAUAUUAUGGUUUUU-- d.16.b.F.nucleatum.fasta AAC-AU--UUGGAAACGAAUGCUAAUACC---UAAUAUUAUGAUUAUA-- d.16.b.S.moniliformis.fasta AACCAU--UAGGAAAUGAUGGAUAAUACU---AGAUAUUAUUAGUAGU-- d.16.b.C.botulinum.F.fasta AGC-CU--UCCGAAAGGRAGAUUAAUACC---GCAUAAUAUAAGAGAA-- d.16.b.C.tetani.fasta AGC-CC--UCCGAAAGGAGGAUUAAUACC---GCAUAAAGUUAAGGUU-- d.16.b.C.perfringens.fasta AGC-CU--UCCGAAAGGAAGAUUAAUACC---UCAUAAUGUUGAAAGA-- d.16.b.C.difficile.fasta AAC-AU--ACCGAAAGGUAUGCUAAUACG---GGAUAAUAUAUUUGAG-- d.16.b.E.brachy.fasta AGC-AU--UUGGAAACGAAUAUUAAUACC---UUAUGAAACUUAACUA-- d.16.b.Epulopiscium.sp.fasta AAC-GU--UUGGAAACAAACGCUAAUACC---GCAUAAUCCAUUUUCU-- d.16.b.H.chlorum.fasta AAC-AG--UCCGAAAGGGCUGCUAAUACC---GCAUAACGUUCCUGAA-- b.16.m.G.max.fasta CAAAGU--GGCGAACGGGUGCGUAAUGCGUGGGAAUCUGCCGAACAGUUC b.16.m.O.berteriana.fasta CAAAGU--GGCGAACGGGUGCGUAACGCGUGGGAAUCUGCCGAACAGUUC b.16.m.S.cereale.fasta CAAAGU--GGCGAACGGGUGCGUAACGCGUGGGAAUCUGCCGAACAGUUC b.16.m.T.aestivum.fasta CAAAGU--GGCGAACGGGUGCGUAACGCGUGGGAAUCUGCCGAACAGUUC d.16.m.Z.mays.fasta CAAAGU--GGCGAACGGGUGCGUAACGCGUGGGAAUCUGCCGAACAGUUC b.16.m.M.polymorpha.fasta CAAAGU--GGCGAACGGGCGAGUAAUAUGUGGGAAUCUGCCAAACAGUUU b.16.m.N.olivacea.fasta CAGCUC--GGGGAAAUAG----UAUUAUCUAUGAAUC--CCGAAUA---- d.16.b.G.liquefaciens.fasta UAACUC--UGGGAAACUGGAGCUAAUACCGCAUGACA--CCUGAGGGUC- d.16.b.B.japonicum.fasta CAACAC--AGGGAAACUUGUGCUAAUACC---GGAUAAGCCCUUACGG-- d.16.b.R.acidophilus.fasta CAACUC--AGGGAAACUUGAGCUAAUACC---GGAUAAGCCUUUCGAG-- d.16.b.A.caulinodans.fasta UAACCC--AGGGAAACUUGGAUUAAUACC---GCAUU-GCCCUUCGGG-- d.16.b.B.quintana.fasta UAACAC--AGAGAAAUUUGUGCUAAUACC---GUAUACGUCCCUCUGGG- d.16.b.M.loti.fasta CAACUC--CGGGAAACUGGAGCUAAUACC---GUAUACGUCCUUUUGG-- d.16.b.A.tumefaciens.fasta UAGCUC--CGGGAAACUGGAAUUAAUACC---GCAUACGCCCUACGGG-- d.16.b.B.bacilliformis.fasta UAACAC--AGAGAAAUUUGUGCUAAUACC---GUAUNCNUCCUUCGGG-- d.16.b.B.henselae.fasta UAACAC--AGAGAAAUUUGUGCUAAUACC---GUAUACGUCCUUAGGG-- d.16.b.B.melitensis.fasta UAACUC--AGGGAAACUUGUGCUAAUACC---GUAUGUGCCCUUCGGG-- d.16.b.R.orientis.fasta UAACUC--GGGGAAACUCGGGCUAAUACC---GCAUAAGCCCUCCGGG-- d.16.b.Methylobacterium.sp.fas UAACCC--UGGGAAACUAGGGCUAAUACC---GGAUACGCCCUUUUGG-- d.16.b.R.bellii.fasta UAACUU--UUAGAAAUAAAAGCUAAUACC---GUAUAUUCUCUACGGA-- d.16.b.R.felis.URRWXCal2.fasta UAACUU--UUAGAAAUAAAAGCUAAUACC---GUAUAUUCUCUACAGA-- d.16.b.R.prowazekii.fasta UAACUU--UUAGAAAUAAAAGCUAAUACC---GUAUAUUCUCUACGGA-- d.16.b.R.prowazekii.GEN.fasta UAACUU--UUAGAAAUAAAAGCUAAUACC---GUAUAUUCUCUACGGA-- d.16.b.R.rickettsii.fasta UAACUU--UUAGAAAUAAAAGCUAAUACC---GUAUAUUCUCUGCGGA-- d.16.b.A.calcoaceticus.fasta CAACAU--UCCGAANGGAAUGCUAAUACC---GCAUACGUCCUACAGGAG d.16.b.P.pacificensis.fasta UAGCUC--GGGGAAACUCGAAUUAAUACC---GCAUACGUCCUACGGGAG d.16.b.C.marismortui.fasta UAACCU--GGGGAAACCCAGGCUAAUACC---GCAUACGUCCUACGGGAG d.16.b.H.halodenitrificans.fas UAACCU--GGGGAAACUCAGGCUAAUACC---GCAUACGUCCUACGGGAG d.16.b.P.aeruginosa.fasta UAACGU--CCGGAAACGGGCGCUAAUACC---GCAUACGUCCUGAGGGAG d.16.b.P.aeruginosa.GEN.fasta UAACGU--CCGGAAACGGGCGCUAAUACC---GCAUACGUCCUGAGGGAG d.16.b.Pseudomonas.sp.fasta CAACGU--UUCGAAAGGAACGCUAAUACC---GCAUACGUCCUACGGGAG d.16.b.P.putida.fasta CAACGU--UUCGAAAGGAACGCUAAUACC---GCAUACGUCCUACGGGAG d.16.b.C.burnetii.fasta UAACCU--GGGGAAACUCGGGCUAAUACC---GUAUAAUCUCUUUGGAGC d.16.b.M.capsulatus.fasta UAACUC--UGGGAAACCCGAGCUAAUACC---GCAUACGCUUAACGGAUG d.16.b.L.pneumophila.1.fasta CAACUU--GGGGAAACUCAAGCUAAUACC---GCAUAAUGUCUGAGGACG d.16.b.L.pneumophila.2.fasta CAACUU--GGGGAAACUCAAGCUAAUACC---GCAUAAUGUCUGAGGACG d.16.b.A.vinosum.fasta UAACCC--GGGGAAACUCGGGCUAAUACC---GCAUACGCCCUACGGGGG d.16.b.Beggiatoa.sp.fasta CAACUU--GGGGAAACUCAAGCUAAUACC---GCAUACGACCUACGGGUG d.16.b.A.hydrophila.fasta UAACAG--UUGGAAACGACUGCUAAUACC---GCAUACGCC-UACGGGGG d.16.b.S.putrefaciens.fasta UAACAG--UUGGAAACGACUGCUAAUACC---GCAUACGCCCUACGGGGG d.16.b.C.freundii.fasta UAACUA--CUGGAAACGGUAGCUAAUACC---GCAUAACGUCGCAAGACC d.16.b.S.dysenteriae.1.fasta UAACUA--CUGGAAACGGUAGCUAAUACC---GCAUAACGUCGCAAGACC d.16.b.K.pneumoniae.fasta UAACUA--CUGGAAACGGUAGCUAAUACC---GCAUAACGUCGCAAGACC d.16.b.P.shigelloides.fasta UAACUA--CGGGAAACUGUAGCUAAUACC---GCAUAAUGUCUACGGACC d.16.b.Y.pestis.fasta UAACUA--CUGGAAACGGUAGCUAAUACC---GCAUGACCUCGCAAGAGC d.16.b.Y.pseudotuberculosis.fa UAACUA--CUGGAAACGGUAGCUAAUACC---GCAUGACCUCGCAAGAGC d.16.b.S.dysenteriae.2.fasta UAACUA--CUGGAAACGGUAGCUAAUACC---GCAUAACGUCGCAAGACC d.16.b.E.coli.0157G.GEN.fasta UAACUA--CUGGAAACGGUAGCUAAUACC---GCAUAACGUCGCAAGACC d.16.b.E.coli.EDL.GEN.fasta UAACUA--CUGGAAACGGUAGCUAAUACC---GCAUAACGUCGCAAGACC d.16.b.E.coli.fasta UAACUA--CUGGAAACGGUAGCUAAUACC---GCAUAACGUCGCAAGACC 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d.16.b.V.cholerae.GEN.fasta UAACCA--UUGGAAACGAUGGCUAAUACC---GCAUAACCUCGCAAGAGC d.16.b.V.parahaemolyticus.fast UAACCA--UUGGAAACGAUGGCUAAUACC---GCAUGAUAGCUUCGGCUU d.16.b.H.influenzae7.fasta UAACGA--CGGGAAACUGUCGCUAAUACC---GCGUAUUAUCGGAAGAUG d.16.b.H.influenzae8.fasta UAACGA--CGGGAAACUGUCGCUAAUACC---GCGUAAUAUCGAAAGAUU d.16.b.H.influenzae6.fasta UAACUA--CGGGAAACUGUAGCUAAUACC---GCGUAAUAUCGAAAGAUU d.16.b.H.influenz.fasta UAACGA--CGGGAAACUGUCGCUAAUACC---GCGUAUUAUCGGAAGAUG d.16.b.H.influenzae.fasta UAACGA--CGGGAAACUGUCGCUAAUACC---GCGUAUUAUCGGAAGAUG d.16.b.P.multocida.fasta UAACUG--UGGGAAACUGCAGCUAAUACC---GCGUAUUCUCUGAGGAGG d.16.b.P.multocida.GEN.fasta UAACUG--UGGGAAACUGCAGCUAAUACC---GCGUAUUCUCUGAGGAGG d.16.b.X.albilineans.fasta UAACGU--AGGGAAACUUACGCUAAUACC---GCAUACGACCUUAGGGUG d.16.b.X.campestris.fasta UAACGU--AGGGAAACUUACGCUAAUACC---GCAUACGACCUACGGGUG d.16.b.X.fastidiosa.GEN.fasta UAACGU--AGGGAAACUUACGCUAAUACC---GCAUACGACCUACGGGUG d.16.b.D.nodosus.fasta CAACGU--AUGGAAACGUACGCUAAUACC---GCAUAAGAUUGAAGAAUG d.16.b.F.tularensis.fasta UACCAG--UUGGAAACGACUGUUAAUACC---GCAUAAUAUCUGUGGAUU d.16.b.B.parapertussis.fasta UAACUA--CGCGAAAGCGUAGCUAAUACC---GCAUACGCCCUACGGGGG d.16.b.B.pertussis.fasta UAACUA--CGCGAAAGCGUAGCUAAUACC---GCAUACGCCCUACGGGGG d.16.b.B.bronchiseptica2.fasta UAACUA--CGCGAAAGCGUGGCUAAUACC---GCAUACGCCCUACGGGGG d.16.b.u.proteobacterium.fasta UAGCUC--GGCGAAAGCCGGAUUAAUACC---GCAUACGACCUGAGGGUG d.16.b.B.mallei.fasta UAGCCC--GGCGAAAGCCGGAUUAAUACC---GCAUACGAUCUGAGGAUG d.16.b.Burkholderia.sp.fasta UAGCCC--GGCGAAAGCCGGAUUAAUACC---GCAUACGAUCUGUGGAUG d.16.b.N.meningitidis.MD58.GEN UAACUG--AUCGAAAGAUCAGCUAAUACC---GCAUACGUCUUGAGAGAG d.16.b.N.meningitidis.Z2491.GE UAACUG--AUCGAAAGAUCAGCUAAUACC---GCAUACGUCUUGAGAGAG d.16.b.N.gonorrhoeae.fasta UAACUG--AUCGAAAGAUCAGCUAAUACC---GCAUACGUCUUGAGAGGG d.16.b.C.testosteroni.fasta UAACUA--CUCGAAAGAGUAGCUAAUACC---GCAUGAGAUCUACGGAUG d.16.b.D.desulfuricans.fasta UAACAG--UUGGAAACGGCUGCUAAUACC---GGAUACGCUCAAAAU--- d.16.b.M.xanthus.fasta UAACCA--GUCGAAAGAUUGGCUAAUACC---GGAUAAGCCCACGGUUUC d.16.b.D.thermophilus.fasta UAACCC--AUCGAAAGGUGGGCUAAUACU---GGAUGAGCGCACGUG--C d.16.b.B.burgdorferi.fasta ---------UAGAAAUAGUAGCUAAUACCGAAUAAGGUCAGUUAAU---- d.16.b.B.burgdorferi.GEN.fasta ---------UAGAAAUAGUAGCUAAUACCGAAUAAGGUCAGUUAAU---- d.16.b.B.hermsii.fasta ---------UAGAAAUAGUAGCUAAUACCGAAUAAGGUCAAUUGAG---- d.16.b.S.aurantia.fasta ---------UGGAAACACAGGGUAAUACCGAAUGAGCUGA--CGAG---- d.16.b.T.pallidum.A.fasta ---------UAGAAAUAGGGGGUAAUACCGAAUACGCUCU-UUUGG---- d.16.b.L.illini.fasta ---------UCGAAAGGAAGGCUAAUACCGCAUAACACCAUGGUUA---- d.16.b.L.interrogans.fasta ---------CCGAAAGGGAAGCUAAUACUGGAUGGUCCCGAGAG-A---- d.16.b.C.trachomatis.GEN.fasta ---------UGGAAACGGCCGCUAAUACCGAAUGUGGCGAUAUUUGGGCA d.16.b.C.trachomatis.L2.fasta ---------UGGAAACGGCCGCUAAUACCGAAUGUGGCGAUAUUUGGGCA d.16.b.C.muridarum.fasta ---------UGGAAACGGCCGCUAAUACCGAAUGUGGCGUAGAUUAGGCA d.16.b.C.pneumoniae.AR39.fasta ---------UGGAAACGAUCGCUAAUACCGAAUGUAGUG-UAAUUAGGCA d.16.b.C.pneumoniae.fasta ---------UGGAAACGAUCGCUAAUACCGAAUGUAGUG-UAAUUAGGCA d.16.b.C.pneumoniae.J138.fasta ---------UGGAAACGAUCGCUAAUACCGAAUGUAGUG-UAAUUAGGCA d.16.b.C.pneumoniae.CWL029.fas ---------UGGAAACGAUCGCUAAUACCGAAUGUAGUG-UAAUUAGGCA d.16.b.C.psittaci.fasta ---------UGGAAACGACCGCUAAUACCGAAUGUGGUA-UGUUUAGGCA d.16.b.D.radiodurans.1.fasta ---------CCGAAAGGUCAGCUAAUACGUGAUGUGGUG--AUUUG---- d.16.b.D.radiodurans.GEN.fasta ---------CCGAAAGGUCCGCUAAUACGUGAUGUGGUG--AUGCA---- d.16.b.B.fragilis.fasta ---------UCGAAAGAAAGAUUAAUACCCGAUAGCAUAAUGAU------ d.16.b.P.gingivalis.fasta ---------UUGAAAGACGGACUNAAACCGCAUACACUUGUAUU------ d.16.b.C.vibrioforme.fasta ---------GAGAAAUCGGGGACAAUACCGGAUGAUGCAGCGGA------ d.16.b.C.jejuni.fasta ---------UGGAAACGACUGCUAAUACUCUAUACUCCUGCUUA------ d.16.b.C.jejuni.GEN.fasta ---------UGGAAACGACUGCUAAUACUCUAUACUCCUGCUUA------ d.16.b.C.sputorum.fasta AUCUAA--AUAUAAAUUAUUACUAAUAUUUUUAAUAGUCAUUUA------ d.16.b.H.pylori.26695.GEN.fast ---------UGGAAACGAUGAUUAAUAC--CAGAUACUCCCUAC------ d.16.b.H.pylori.J99.GEN.fasta ---------UGGAAACGAUGAUUAAUAC--CAGAUACUCCCUAC------ d.16.b.H.pylori2.fasta ---------UGGAAACGAUGAUUAAUAC--CAGAUACUCC-UAC------ d.16.b.A.capsulatum.fasta UAACUU--CGGGAAACCGAGGCUAAUACCGCAUAAUACCCACGGGUCAAA d.16.b.H.foetida.fasta UAACGU--UCCGAAAGGGACGAUAAUACCGCAUGAGACCACAGGAUUGGA d.16.b.A.globiformis.fasta UAAGCC--UGGGAAACUGGGUCUAAUACCGGAUAU-GACUCCUCAUCGCA d.16.b.M.luteus.fasta UAAGCC--UGGGAAACUGGGUCUAAUACCGGAUAG-GAGCGUCCACCGCA d.16.b.Frankia.sp.fasta UAACCU--CGGGAAACCGGGGCUAAUGCCGGAUAU-GACAUUGCCGGGCA d.16.b.S.bottropensis.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUAC-AACACUCUCGGGCA d.16.b.S.scabiei.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUAC-GACACUCUCGGGCA d.16.b.S.neyagawaensis.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUAC-GACGCGCUCGGGCA d.16.b.S.diastatochromogenes.f CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUAC-AACCACUAGGGGCA d.16.b.Streptomyces.sp.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUAA-UACCUUCCCUCGCA d.16.b.S.acidiscabies.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUAU-CACUCCUGCCUGCA d.16.b.S.griseus.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUAA-CACUCUGUCCCGCA d.16.b.S.ornatus.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUAA-CACUCUGUCCCGCA d.16.b.S.subrutilus.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUAC-CACUCCUGUCUGCA d.16.b.S.bikiniensis.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUAC-GACCCGGGAAGGCA d.16.b.S.galbus.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUAU-GACCAUCUUGGGCA d.16.b.S.hygroscopicus.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUAC-CACUCUCGCAGGCA d.16.b.S.lincolnensis.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUAC-CACCACCAUGGGCA d.16.b.S.coelicolor.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUACUGACCCUCGCAGGCA d.16.b.S.tendae.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUACUGACCCUCGCAGGCA d.16.b.S.ambofaciens.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUACUGAUCCGCUUGGGCA d.16.b.S.eurythermus.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUAC-GAGCCUCCAAGGCA d.16.b.S.nodosus.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUAC-GAGCCGGGGAGGCA d.16.b.S.sampsonii.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUAU-GACUGUCCAUCGCA d.16.b.S.glaucescens.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUACUGAUUGUCUUGGGCA d.16.b.S.pseudogriseolus.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUACUGAUCAUCUUAGGCA d.16.b.S.caelestis.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUACUGACCAUCUUGGGCA d.16.b.S.bluensis.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUAC-AACCACUACAGGCA d.16.b.S.espinosus.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUAC-GACACCGGGAGGCA d.16.b.S.mashuensis.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUAC-GACACGCGACCGCA d.16.b.S.rimosus.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUAU-GACACACGACCGCA d.16.b.S.limosus.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUAU-GACUGUCCAUCGCA d.16.b.S.odorifer.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUAU-GACUGUCCAUCGCA d.16.b.S.felleus.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUAU-GACUGUCCAUCGCA d.16.b.S.albidoflavus.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUAU-GACUGUCCAUCGCA d.16.b.S.gougerotii.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUAU-GACCGUCCAUCGCA d.16.b.S.rutgersensis.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUAU-GACCGUCCAUCGCA d.16.b.S.intermedius.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUAU-GACUGUCCACCGCA d.16.b.S.thermodiastaticus.fas CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUAC-GACCAUCUGAGGCA d.16.b.S.thermoviolaceus.fasta CAAGCC--CUGGAAACGGGGUCUAAUACCGGAUAC-GACACAGGGAGGCA d.16.b.S.thermovulgaris.1.fast UAAGCC--CUGGAAACGGGGUCUAAUACCGGAUAU-GACUCAAGGUCGCA d.16.b.S.thermovulgaris.2.fast UAAGCC--CUGGAAACGGGGUCUAAUACCGGAUAU-GACUCAAGGUCGCA d.16.b.S.macrosporus.fasta UAACUC--CGGGAAACCGGAGCUAAUACCGGAUAC-GACCAUCGGAGGCA d.16.b.S.megasporus.fasta UAACUC--CGGGAAACCGGAGCUAAUACCGGAUAC-GACCCUCGGGGGCA d.16.b.S.thermolineatus.fasta CAACCC--GGGGAAACCCGGGCUAAUACCGGAUAC-GACCCUCCAGGGCA d.16.b.M.tuberculosis.2.fasta UAAGCC--UGGGAAACUGGGUCUAAUACCGGAUAG-GACCACGGGAUGCA d.16.b.M.tuberculosis.3.fasta UAAGCC--UGGGAAACUGGGUCUAAUACCGGAUAG-GACCACGGGAUGCA d.16.b.M.avium.fasta UAAGCC--UGGGAAACUGGGUCUAAUACCGGAUAG-GACCUCAAGACGCA d.16.b.M.leprae.fasta UAAGCU--UGGGAAACUGGGUCUAAUACCGGAUAG-GACUUCAAGGCGCA d.16.b.M.leprae.GEN.fasta UAAGCU--UGGGAAACUGGGUCUAAUACCGGAUAG-GACUUCAAGGCGCA d.16.b.M.tuberculosis.CDC1551. UAAGCC--UGGGAAACUGGGUCUAAUACCGGAUAG-GACCACGGGAUGCA d.16.b.M.tuberculosis.GEN.fast UAAGCC--UGGGAAACUGGGUCUAAUACCGGAUAG-GACCACGGGAUGCA d.16.b.N.asteroides.fasta UAAGCC--UGGGAAACUGGGUCUAAUACCGGAUAU-GACCUUCGGAUGCA d.16.b.R.erythropolis.fasta UAAGCC--UGGGAAACUGGGUCUAAUACCGGAUAU-GACCUCCUAUCGCA d.16.b.C.diphtheriae.fasta UAAGCC--UGGGAAACUGGGUCUAAUACUGGAUAG-GACCAU--GCUUUA d.16.b.A.israelii.fasta UAACCG--CUUGAAAGGGUGGCUAAUACGGGGUGUUCUGGCUGUGCCGCA d.16.b.B.hyodysenteriae.fasta UAACCC--AUGGAAACAUGGACUAAUACCGCAUAU-ACUCUUGCUACAUA d.16.b.G.subterranea.fasta UAGCUA--CUGGAAACGGUAGGUAAUACUG-------------------- d.16.b.P.miotherma.fasta UAGCUA--CUGGAAACGGUAGGUNAACUCU-------------------- d.16.b.B.andersonii.fasta UAGCCA--AGAGAAAUUUUGGGUAAUACCG-------------------- d.16.b.H.aurantiacus.fasta UAACGG--GUCGAAAGACUCGCUAAUCCCG------------------CC d.16.b.Leptospirillium.sp.fast UAUCCC--UCCGAAAGGGGGGGCAAUACCGA----AUAGUAUCCGGUUCC d.16.b.A.aeolicus.fasta UAACCC--CGGGAAACCGGGGCUAAUACCCCAUAAUGCCACCCGCCACUA d.16.b.A.pyrophilus.fasta UAACCC--CGGGAAACCGGGGCUAAUACCCCAUAAAGCCGCCCGCCACUA d.16.b.T.maritima.fasta UAACCA--GGGGAAACCCUGGCUAAUACCCCAUA------CGCUCCAUCA d.16.b.T.maritima.GEN.fasta UAACCA--GGGGAAACCCUGGUUAAUACCCCAUA------CGCUCCAUCA n.16.b.T.thermophilus.2.num.fa CAACCC--GGGGAAACUCGGGCUAAUCCCCCAUGUG-------------- s.16.b.T.thermophilus.2.schem. CAACCC--GGGGAAACUCGGGCUAAUCCCCCAUGUG-------------- d.16.b.T.thermophilus.2.fasta CAACCC--GGGGAAACUCGGGCUAAUCCCCCAUGUG-------------- s.16.b.T.thermophilus.1.schem. CAACCC--GGGGAAACUCGGGCUAAUCCCCCAUGUG-------------- n.16.b.T.thermophilus.1.num.fa CAACCC--GGGGAAACUCGGGCUAAUCCCCCAUGUG-------------- d.16.b.T.thermophilus.1.fasta CAACCC--GGGGAAACUCGGGCUAAUCCCCCAUGUG-------------- d.16.b.T.aquaticus.fasta CAACAU--GGGGAAACCCAGGCUAAUCCCCCAUGUG-------------- d.16.b.T.roseum.fasta UAACCC--GGGGAAACUCGGGCUAAUACCCCAUACGC-----UUGGCUGG d.16.b.P.marina.fasta UAGCGU--CGGGAAACUGGCGGUAAUACCAAAUAACAUCU---------- d.16.b.P.staleyi.fasta UAGCGG--CGGGAAACUGCCGGUAAUACCAGAUGAUGUUU---------- d.16.b.P.Schlesner.fasta UAGCCA--AGGGAAACUUUGGGUAAUACCGGAUGUGGUCU---------- d.16.b.G.obscuriglobus.1.fasta UAGCCA--UCAGAGAUGGUGGGUAAUACCGGAUGACCUCG---------- d.16.b.I.pallida.fasta UAGCCG--GGGGAAACUCCGGGUAAUUCCCAGCGAUGUCGGUCUCAGGC- d.16.a.P.abyssi.fasta UAACCC--CGGGAAACUGGGGCUAAUCCCCCAUAGGCCUGGGGUAC-UGG d.16.a.P.horikoshii.fasta UAACCC--CGGGAAACUGGGGCUAAUCCCCCAUAGGCCUGGGGUAC-UGG d.16.a.P.furiosus.fasta UAACCC--CGGGAAACUGGGGCUAAUCCCCCAUAGGCCUGGGGUAC-UGG d.16.a.T.celer.fasta UAACCC--CGGGAAACUGGGGCUAAUCCCCCAUAGGCCUGAGGUAC-UGG d.16.a.A.fulgidus.fasta UAACCC--CGGGAAACUGGGGCUAAUCCCCCAUAGGGGAUGGGUAC-UGG d.16.a.N.equitans.fasta UAACCC--CGGGAAACUGGGGCUAAUCCCCGAUAGGGGAUGGGUGC-UGG d.16.a.A.pernix.K1.fasta UAACCCCUCGGGAAACUGGGGCUAAUCCCCGAUAGGCGGGGGGUGCCUGG d.16.a.P.occultum.fasta UAACCC--CGGGAAACUGGGGCUAAUCCCCGAUAGGCGAGGGG-GCCUGG d.16.a.T.tenax.fasta CAACCC--CGGGAAACUGGGGCUGAUCCCCCAUAGGGGAAGGGCGC-UGG d.16.a.S.acidocaldarius.fasta UAACCC--CGGGAAACUGGGGAUAAUCCCCGAUAGGGAAGGAG-UCCUGG d.16.a.S.solfataricus.fasta UAACCC--CGGGAAACUGGGGAUAAUCCCCGAUAGGGAAGGAG-UCCUGG d.16.a.S.solfataricus.2.fasta UAACCC--CGGGAAACUGGGGAUAAUCUCCCAUAGGCGAGGAG-UCCUGG d.16.a.M.thermautotrophicus.1. UAACCC--CGGGAAACUGGGGAUAAACCCGGAUAGGUGAUGCU-GCCUGG d.16.a.M.thermautotrophicus.2. UAACCC--CGGGAAACUGGGGAUAAACCCGGAUAGGUGAUGCU-GCCUGG d.16.a.M.formicicum.fasta UAACCC--UGGGAAACUGGGGAUAAUACCGGAUAUGUAGGGCU-GCCUGG d.16.a.M.vannielii.fasta UAACCU--UGGGAAACUGAGGAUAAUUCUCCAUAAGAAAAGCA-GUCUGG d.16.a.H.marismortui.rrnA.fast UAACCU--CGGGAAACUGAGGCCAAUAGCGGAUAUAACUCUCAUGU-UGG d.16.a.H.marismortui.rrnB.fast UAACCU--CGGGAAACUGAGGCCAAUAGCGGAUAUAACUCUCAUGC-UGG d.16.a.Halobacterium.sp.fasta UACUCU--CGGGAAACUGAGGCUAAUCCCCGAUAACGCUUUGCUCC-UGG d.16.a.N.bangense.fasta UAACCU--CGGGAAACUGAGGCCAAUCCGGAAUACGAUUCCCAAGC-UGG d.16.a.N.innermongoliae.fasta CAACCU--CGGGAAACUGAGGCUAAUCUGGAAUACGACUCUCAUCC-UGG d.16.a.H.volcanii.fasta UAACCU--CGGGAAACUGAGGCUAAUAGUUCAUACGGGAGUCAUGC-UGG d.16.a.M.hungatei.fasta UAAUCC--CGGGAAACUGGGGGUAAUACUCCAUAGUUCGUGCUGAC-UGG d.16.a.P.torridus.fasta UAACCU--CGGGAAACUGAGGCUAAUUCCCUAUAGCCAUUCAGAAC-UGG d.16.a.T.acidophilum.fasta UAACCU--CGGGAAACUGAGGCUAAUUCCCCAUAGUCAUUACAAAC-UGG a.16.e.G.ardeae.fasta -GGAGUCGAGGGAAAGGUCUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCG d.16.e.G.intestinalis.fasta -GGAGCCGAGGGCAAGGUCUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCG a.16.e.G.muris.fasta -A-AGUCGAGGGAAAGGUCUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCG d.16.e.A.bracteata.fasta -------GAGGGCAAG-UCUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.Glomus.sp.W3349.fasta ACAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.S.cerradensis.fasta ACAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC a.16.e.G.intraradices.fasta ACAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.S.culisetae.fasta ACAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC a.16.e.P.balamuthi.fasta ACAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.A.flavus.fasta ACAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.T.caries.fasta ACAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.M.circinelloides.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.M.racemosus.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.R.oryzae.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC a.16.e.M.edulis.fasta UCUAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC a.16.e.P.magellanicus.fasta UCCAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC b.16.e.E.granulosus.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAACUCCAGCUCC d.16.e.D.melanogaster.fasta CCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC b.16.e.C.koreana.fasta UCCAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC b.16.e.A.australis.fasta UCCAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC b.16.e.O.utahensis.fasta CCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC b.16.e.A.salina.fasta UCCAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAACUCCAGCUCC d.16.e.M.musculus.fasta UCCAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.R.norvegicus.fasta UCCAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.H.sapiens.fasta UCCAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.O.cuniculus.fasta UCCAUUGGAGGGCAAGUC-UGGUCGCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.X.borealis.fasta UCUAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.X.laevis.fasta UCUAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.A.castellanii.fasta ACAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.B.mandrillaris.fasta ACAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.P.falciparum.A.fasta ACAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.P.falciparum.S.fasta ACAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.P.vivax.A.fasta -CAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.P.vivax.O.fasta -CAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.P.vivax.S.fasta -CAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.E.histolytica.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.I.hoferi.fasta ACAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.Dermocystidium.sp.fasta ACAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGCAAUUCCAGCUCC d.16.e.S.destruens.fasta ACAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.A.unguiculata.fasta ACAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.D.grandis.fasta ACAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.A.macrogynus.fasta ACAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.B.emersonii.fasta ACAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.C.albicans.fasta ACAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.S.cerevisiae.fasta ACAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.N.crassa.fasta ACAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.P.anserina.fasta ACAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.C.immitis.fasta ACAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.L.major.fasta ACAAUUGGAGGACAAGUC-UGGUGCCAGCACCCGCGGUAAUUCCAGCUCC d.16.e.T.cruzi.fasta ACAAUUGGAGGACAAGUC-UGGUGCCAGCACCCGCGGUAAUUCCAGCUCC d.16.e.T.brucei.fasta ACAAUUGGAGGACAAGUC-UGGUGCCAGCACCCGCGGUAAUUCCAGCUCC d.16.e.P.carinii.fasta ACAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.C.neoformans.fasta ACAACUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.Fungus.sp.QPX.fasta ACAACUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.U.maydis.fasta ACGAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.M.leidyi.fasta ACAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.T.cystophora.fasta UCUAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.M.prolifera.fasta ACAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.P.haeckeli.fasta ACAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAAUCCAGCUCC d.16.e.E.rotunda.fasta UCCACUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.P.chromatophora.fasta UCCACUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCG-UAAUUCCAGCUCC d.16.e.A.majus.fasta UCCAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.S.indicum.fasta UCCAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.D.grandiflora.fasta UCCAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.Pla.lanceolata.fasta UCCAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.N.tabacum.fasta UCCAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.A.thaliana.fasta UCCAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.S.alba.fasta UCCAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.S.tuberosum.fasta UCCAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.F.x.ananassa.fasta UCCAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.G.max.fasta UCCAUUGAAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.O.sativa.fasta UCCAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.Z.mays.fasta UCCAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.A.verticilliflorum.fast UCCAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.G.spirotaenia.fasta UCCAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.Staurastrum.sp.M752.fas UCCAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.C.paradoxa.fasta UCCAUUGGAGGGAAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.G.nostochinearum.fasta UCAAUUGGAGGGAAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.G.wittrockiana.fasta UCAAUUGGAGGGAAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.C.luteoviridis.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.O.longa.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.P.weissei.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.C.citrina.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.G.steinii.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.Ple.lanceolata.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.O.quadricornutus.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.S.lemnae.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.S.mytilus.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.E.mobilis.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.O.granulifera.1.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.O.granulifera.2.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.U.gallina.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.U.pisces.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.P.lepisma.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.U.grandis.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.B.coli.fasta -CGAUUAGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCU d.16.e.E.aediculatus.fasta ACAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.T.thermophila.fasta ACAAUUGGAGGGCAAGUCAUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.Bangia.sp.NWT.fasta UCCAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.Bangia.sp.VIS7.fasta UCCAUUGGAGGGCAAGUC-UGGUACCAGCAGCCGCGGUAAUUCCAGUUCC d.16.e.E.carnea.fasta UCCAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.R.parvula.fasta UCCAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.C.coeruleus.fasta UCCAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.P.aerugineum.1.fasta UCCAUUGGAGGGCAAGWC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.R.maculata.fasta UCCAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.A.ambigua.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.A.baicalensis.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.S.nipponica.fasta CCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.C.radiatus.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCG-UAAUUCCAGCUCC d.16.e.C.criophilum.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.A.capitellata.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.S.pupula.fasta UCCAAUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.T.antarctica.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.E.triangulatum.fasta UCGAUUGAAGUGCAAGUC-UGGUGCCAGCAGCCGGGGUAAUUCCAGCUCA d.16.e.A.bongranii.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.Pseudogomphonema.sp.fas UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.D.tenue.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.G.marina.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.Thalassionema.sp.fasta CCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.R.belgicae.fasta UCAAUUGGAGGGCAAGUC-UUGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.Undatella.sp.fasta UMAAUUGGAGGGCAAGUC-UGGUKCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.C.belgica.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.O.sinensis.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.D.brightwellii.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.L.undulatum.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.T.eccentrica.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.T.pseudonana.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.S.costatum.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.P.laevis.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.L.borealis.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCG-UAAUUCCAGCUCC d.16.e.P.pseudodenticulata.fas UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCG-UAAUUCCAGCUCC d.16.e.B.mediterranea.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.B.pacifica.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.L.minuta.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.L.danicus.fasta CCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.Chaetoceros.sp.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUUC d.16.e.A.invadans.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.L.giganteum.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.M.varians.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.B.hominis.fasta GCCAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.P.marinus.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCGCC d.16.e.T.gondii.fasta ACAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.A.fundyense.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.B.bigemina.fasta CCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.B.canis.fasta GCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.Babesia.sp.OKD.fasta ACAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.B.microti.1.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.B.microti.2.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.B.microti.3.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.B.microti.4.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.B.microti.5.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.B.rodhaini.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.B.gibsoni.fasta UCAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.B.bovis.fasta CCCAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.J.libera.fasta UCCAUUGGAGGGCAAGUC-UGGUGCCAGCGGCCGCGGUAACACCAGCUCC d.16.e.R.americana.fasta ACAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAACACCAGCUCC d.16.e.B.ostreae.fasta UCCAGCGGAGGGCAAGCC-UGGUGCCAGCAGCCGCGGUAAUACCAGCUCC d.16.e.A.dasyae.fasta UCCAGCAGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCU d.16.e.A.hermannii.fasta UCCAGCAGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCU d.16.e.N.helminthoides.fasta UCCAGCAGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCU d.16.e.B.gelatinosum.fasta UCCAGCAGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCU d.16.e.N.tortuosa.fasta UCCAGCAGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCU d.16.e.T.hispida.fasta ACCAGCAGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCU d.16.e.T.violacea.4.fasta ACCAGCAGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCU d.16.e.T.violacea.1.fasta UCCAGCAGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCU d.16.e.T.violacea.2.fasta UCCAGCAGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCU d.16.e.N.shawii.fasta UCCAGCAGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCU d.16.e.B.investiens.fasta UCCAGCAGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCU d.16.e.B.macrosporum.fasta UCCAGCAGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCU d.16.e.A.plicata.fasta UCCAGCAGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCU d.16.e.C.officinalis.fasta UCCAGCAGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCU d.16.e.R.carriebowensis.fasta UCCAGCAGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCU d.16.e.B.hamifera.fasta GCCAGCAGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCU d.16.e.G.vagum.fasta GCCAGCAGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCU d.16.e.C.crispus.fasta GCCAGCAGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCU d.16.e.H.plana.fasta GCCAGCAGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCU d.16.e.R.leptophylla.fasta GCCAGCAGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCU d.16.e.P.pulvinata.fasta GCCAGCAGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCU d.16.e.C.rubrum.fasta GCCAGCAGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCU d.16.e.Gracilariopsis.sp.fasta GCCAGCAGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCU d.16.e.B.moritziana.fasta GCCAGCAGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCU d.16.e.H.rubra.fasta CCAAUAGGAGGGCAAGCC-AAGUGCCAGCAGCCGCGGUAAUACUUACUCC d.16.e.D.grisea.fasta ACAAUUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.N.fowleri.fasta GCCAUUGGAGGAAAAGUC-UGGUGCCAGCACCCGCGGUAAUUCCAGCUCC d.16.e.N.gruberi.fasta GCCAUUGGAGGAAAAGUC-UGGUGCCAGCACCCGCGGUAAUUCCAGCUCC a.16.e.Hexamita.sp.fasta GCAAUUAGUGGGAGAGCA-UGGUGCCAGCAGCCGCGGUAAUUCCAUCACU d.16.e.T.foetus.fasta CCUAGCAGAGGGCCAGUC-UGGUGCCAGCAGCUGCGGUAAUUCCAGCUCU d.16.e.A.khaliulini.fasta GU-AUUGGAGGGCAAGUCU-GGUGCCAGCAGCCGCGGUAAUACCAGCUCC d.16.e.E.aedis.fasta GU-ACUGGAGGGCAAGUCU-GGUGCCAGCAGCCGCGGUAAUACCAGCUCC d.16.e.A.connecticus.fasta GU-ACUGGAGGGCAAGUCU-GGUGCCAGCAGCCGCGGUAAUACCAGCUCC d.16.e.I.barri.fasta GU-ACUGGAGGGCAAGUCU-GGUGCCAGCAGCCGCG-UAAUUCCAGCUCC d.16.e.A.ferocious.fasta AU-AUUGGAGGGCAAGUCU-GGUGCCAGCAGCCGCGGUAAUACCAGCUCC d.16.e.Amblyospora.sp.fasta AC-AUUGGAGGGCAAGUUU-GGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.C.lunata.fasta AU-ACUGGAGGGCAAGGCU-GGUGCCAGCAGCUGCGGUAAUUCCAGCUCC d.16.e.P.anophelis.fasta GCGACUGGAGGGCAAGUCU-GGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.Hazardia.sp.fasta GCGACUGGAGGGCAAGUCU-GGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.H.milleri.fasta GCGACUGGAGGGCAAGUCU-GGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.P.simulii.fasta GCGACUGGAGGGCAAGUCU-GGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.W.palustris.fasta GCGACUGGAGGGCAAGUCU-GGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.Nosema.sp.03.fasta UAAAUCGGAGGGCAAAUCG-AGUGCCAGCAGCCGCGGUAAUACUUGUUCC d.16.e.Nosema.sp.05.fasta UAAAUCGGAGGGCAAAUCG-AGUGCCAGCAGCCGCGGUAAUACUUGUUCC d.16.e.Endoreticulatus.sp.fast UAAAUCGGAGGGCAAAUCG-AGUGCCAGCAGCCGCGGUAAUACUUGUUCC d.16.e.Nosema.sp.02.fasta UAAAUCAGAGGGCAAAUCG-AGUGCCAGCAGCCGCGGUAAUACUUGUUCC d.16.e.N.spodopterae.fasta UAAAUCGGAGGGCAAAUCG-AGUGCCAGCAGCCGCGGUAAUACUUGUUCC d.16.e.N.trichoplusiae.fasta UAAAUCGGAGGGCAAAUCG-AGUGCCAGCAGCCGCGGUAAUACUUGUUCC d.16.e.N.bombycis.27.fasta UAAAUCGGAGGGCAAAUCG-AGUGCCAGCAGCCGCGGUAAUACUUGUUCC d.16.e.N.bombycis.02.fasta UAAAUCGGAGGGCAAAUCG-AGUGCCAGCAGCCGCGGUAAUACUUGUUCC d.16.e.V.imperfecta.fasta UAAAUCGGAGGGCAAAUCG-AGUGCCAGCAGCCGCGGUAAUACUUGUUCC d.16.e.N.furnacalis.fasta UAAAUCGGAGGGCAAAUCG-AGUGCCAGCAGCCGCGGUAAUACUUGUUCC d.16.e.Microsporidium57864.fas UUAAUUGGAGGGCAAAUCA-AGUGCCAGCAGCCGCGGUAAUACUUGUUCC d.16.e.Vairimorpha.sp.C21.fast UUAAUUGGAGGGCAAAUCA-AGUGCCAGCAGCCGCGGUAAUACUUGUUCC d.16.e.N.oulemae.fasta UUAAUUGGAGGGCAAAUCA-AGUGCCAGCAGCCGCGGUAAUACUUGUUCC d.16.e.N.necatrix.fasta UUAAUUGGAGGGCAAAUCA-AGUGCCAGCAGCCGCGGUAAUACUUGUUCC d.16.e.V.necatrix.fasta UUAAUUGGAGGGCAAAUCA-AGUGCCAGCAGCCGCGGUAAUACUUGUUCC d.16.e.N.apis.fasta UUAAUUGGAGGGCAAAUCG-AGUGCCAGCAGCCGCGGUAAUACUUGUUCC d.16.e.O.occidentalis.fasta UUAAUUGGAGGGCAAAUCA-AGUGCCAGCAGCCGCGGUAAUACUUGUUCC d.16.e.Microsporidium.sp.DP119 -CAAUUGGAGGGCAAGUUUUGGUGCCAGCAGCCGCGGUAAUACCAACUCC d.16.e.V.corneae.fasta --AAUUGGAGGGCAAGUUU-GGUGCCAGCAGCCGCGGUAAUACCGACUCC d.16.e.A.michaelis.fasta --AACUGA--GGAAAGCUG--GUGCCAGCAGCCGCGGUAAUACUUGCUCC d.16.e.T.contejeani.fasta AUAAUUGGAGGGCAAGUCU-GGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.E.hellem.fasta ---ACUGGAGGGCAAGUCG-GGUGCCAGCAGCCGCGGUAAUACCUGCUCC d.16.e.Encephalitozoon.sp.fast ---AUUGGAGGGCAAGUCG-CGUGCCAGCAGCCGCGGUAAUACCUGCUCC d.16.e.E.cuniculi.fasta ---AUUGGAGGGCAAGUCG-GGUGCCAGCAGCCGCGGUAAUACCUGCUCC d.16.e.O.colligata.fasta ---AUUGGAGGGCAAGUCG-GGUGCCAGCAGCCGCGGUAAUACCUGCUCC d.16.e.E.salmonis.fasta GCAAUUGGAGGGCAAGUUUUGGUGCCAGCAGCCGCGGUAAUUCCAACUCC d.16.e.N.salmonis.fasta GCAAUUGGAGGGCAAGUUUUGGUGCCAGCAGCCGCGGUAAUUCCAACUCC d.16.e.Enterocytozoonidae.sp.f GCAACUAGAGGGCAAGUUUUGGUGCCAGCAGCCGCGGUAACACCAACUCU d.16.e.E.bieneusi.fasta GCAAUUGGAGGGCAAGCUUUGGUGCCAGCAGCCGCGGUAACUCCAACUCC d.16.e.B.algerae.fasta GCGACUGGAGGGCAAGUCU-GGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.T.solenopsae.fasta GCGACUGGAGGGCAAGUCU-GGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.V.acridophagus.fasta UUUACUGGAGGGCAAGUCU-GGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.Bacillidium.sp.fasta AUAAUUGGAGGGCAAGUCU-GGUGCCAGCAGCCGCG-UAAUUCCAGCUCC d.16.e.P.cristatellae.fasta UCUACUGGAGGGCAAGUCU-GGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.Pleistophora.sp.fasta ---AUUGGAGGGCAAGUUU-GGUGCCAGCAGCCGCGGUAAUACCGACUCC d.16.e.O.operophterae.fasta GCGAUUGGAGGGCAAGUUC-GGUGCCAGCAGCCGCGGUAAUACCGACUCC d.16.e.F.magnivora.fasta UUGACUGGAGGGCAAGUCU-GGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.G.atherinae.fasta ACAG---GAGGACAAGACU-GGUGCCAGCACCCGCGGUAAUACCAGCUCC d.16.e.Ichthyosporidium.sp.fas ACAG---GAGGACAAGACU-GGUGCCAGCACCCGCUGUAAUACCAGCUCC d.16.e.L.acerinae.fasta ACAG---GAGGACAAGACU-GGUGCCAGCACCCGCGGUAAUACCAGCUCC d.16.e.H.anguillarum.fasta ACAG---GAGGUCAAGACU-GGUGCCAGCAUCCGCGGUAAUACCAGCUCC d.16.e.P.mirandellae.fasta ACAG---GAGGUCAAGACU-GGUGCCAGCAUCCGCGGUAAUACCAGCUCC d.16.e.T.hominis.fasta ACAG---GAGGUAAAGACU-GGUGCCAGCAUCCGCGGUAAUACCAGCUCC d.16.e.V.culicis.fasta ACAG---GAGGUCAAGACU-GGUGCCAGCAUCCGCGGUAAUACCAGCUCC d.16.e.P.hippoglossoideos.fast ACAG---GAGGUCAAGACU-GGUGCCAGCAUCCGCGGUAAUACCAGCUCC d.16.e.Microgemma.sp.fasta ACUG---GAGGUCAAGGCU-GGUGCCAGCAUCCGCGGUAAUACCAGCUCC d.16.e.S.lophii.fasta ACUGUGGAGGGUCAAGGCU-GGUGCCAGCAUCCGCGGUAAUACCAGCUCC d.16.e.Pleistophora.sp.LS.fast ACUG---GAGGUCUAGUCU-GGUGCCAGCAUCCGCGGUAAUACCAGCUCC d.16.e.D.gammarellum.fasta ACUG---GAGGUCAAGUCU-GGUGCCAGCAUCCGCGGUAAUUCCAGCUCC d.16.e.M.prosopium.fasta ACUG---GAGGUAAAGACU-GGUGCCAGCAUCCGCGGUAAUACCAGCUCC d.16.e.A.scoticae.fasta GCGACUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC d.16.e.P.whitei.fasta GCGACUGGAGGGCAAGUC-UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCC a.16.c.C.coccineum.fasta -------------------------------------------AA-UUCG a.16.c.C.ruber.fasta -------------------------------------------AAAUCCG d.16.c.N.tabacum.fasta -------------------------------------------AA-UCCG d.16.c.S.oleracea.fasta -------------------------------------------AA-UCCG d.16.c.Z.mays.fasta -------------------------------------------AA-UCCG d.16.c.M.polymorpha.fasta -------------------------------------------AA-UCCG d.16.c.R.communis.fasta -------------------------------------------AA-UCCG d.16.c.C.vulgaris.fasta ------------------------------------A------AA--UCG d.16.c.P.wickerhamii.fasta ------------------------------------A------AA--UUG d.16.c.P.minor.fasta ------------------------------------A------AAGGCCG d.16.c.N.olivacea.fasta --------------------------------------------AACCGG d.16.c.P.parkeae.fasta CGAAUUUUUCUAAAUAAAAAUUUGGUCUUAGAA-AUA------AAUUUGG d.16.c.C.reinhardtii.fasta -------------------------------------------AAAACCG b.16.m.A.castellanii.fasta -GCUAAAUUCCUAAAAUUAUUAAAAAUAAAAGA-UUU-------AUAUCG d.16.c.P.thurberi.fasta -U---AAUAUAUAAGAAUCU----ACCAUUCAA-UUU-------UUAUAA b.16.m.C.crispus.fasta -A---AAUUGUUAAAUACAU--------UUAAA-AUU-------AAAUUG d.16.c.T.gondii.fasta -UUAUAAUAAACGCAAUAGU--GUUUUAAAAGA-UAA-------UUAUUG b.16.m.N.crassa.fasta -UUAAAAGUGGUGUACAGGUGAGUAUAAUAUUU-UUU------CGC-UUA b.16.m.P.anserina.fasta -UUAAAAGUGGUGUACAGGUGAGUAUUAUGGUU-UUU------UGUACUA b.16.m.P.chrysogenum.fasta -GUAGUAGUGGUGUACAGGUGAGUAAAAGAUAA-AUU------GGC--UA b.16.m.E.nidulans.fasta -GUAGUAGUGGUGUACAGGUGAGUAAAAGAUAA-UUU------GGC--UA b.16.m.S.cerevisiae.fasta -AUA-AUAAAAAGGAUAUAUAUAUAAUAUAUAU-UUA------UCUAU-- b.16.m.W.saturnus.m.fasta -AUG-AGGAAUAAUAAAUAAAGAUAAUUAUUAA-UUA------AUUAUUG b.16.m.P.minor.fasta -UUAUACAAAUAACACAUGCAAACACAAUUUAA-UUA-------UUGUGU d.16.c.P.falciparum.fasta -AAGCGCAAA-AAUAUAUGUACUAUAUUAAAAA-UUA------AUAUUAU d.16.c.B.bovis.fasta -UUAAGUGCUAAAAACGUACAAUUAAAAUUU---UUA------UUUACA- b.16.m.T.pyriformis.fasta -AAACAAUAACAAAUGCUAUAAAAAACAAUUA--UAA------AUUAUAA d.16.m.S.sinuspaulianus.fasta -AU-UAAUUGCAAAAAUU-UAAAUAAAAAUGAC-UAA------AGCAAAA b.16.m.P.tetraurelia.fasta -UGCCACCCAAAAAAAAUUUUUUAAAAAAAUCG-AUA------CUUAAGU b.16.m.D.discoideum.fasta -AAUAAAAAGAAAGAGGAACUUGAAAAACAGUA-AGA------CUCGUUA d.16.m.P.polycephalum.fasta -UGGUAAGAUAAAAGCCUACCA--AGCCGAUGA-UCU------CUAGCUG b.16.m.P.littoralis.fasta -CUCCGGGAGAAAAAAAGGGAAAUACAGGAUAA-UUA------UAAGGUA b.16.m.P.wickerhamii.fasta -UUAUAUUUAUAUAAAAUAAAGUAUAAAGAAUA-AUA------UUCGUUA d.16.c.H.africana.fasta -UAAUGUCCUAUAAGCUGAAAAGUAAAAGGAUU-AAA------UCCACUA d.16.c.C.fragile.fasta -----UACUUUAUAGGCUGAGGAGUUAAAG-GU-UUU------AUUUCCG d.16.c.C.sertularioides.fasta -----AACUCGAUGAUGUGUUUAUCUGAAAUAU-UUA------AUAAAUG d.16.c.C.humicola.fasta ----GGAGGGGGAAAACAUCGGGAAACCGAC-G-CUA------AUUCCCC d.16.c.P.uvella.fasta -UUUGUAGAGGGAUAACAUCGGGAAACCGCUUA-UUA------AUACCUC a.16.c.G.nostochinearum.fasta --ACCCCAUAUGCCGUAAGGUGAAAGGAUU-----UC------UAAUCUG a.16.c.G.wittrockiana.fasta --ACUCCGUAUGCCGAAAGGUGAAAGGAUUGAU-UUU------CAAUCUG d.16.c.C.paradoxa.fasta --UAAGUAAAAUUAAAUUGGUGAAAAGAGU--------------AAUCUG d.16.y.C.paradoxa.fasta --CG-------------UGGUGAAAAGAGU--------------AAUCUG d.16.c.Cryptomonas.sp.fasta ----------------AGAGUGAAAGGG----------------AAACCA d.16.c.P.palmata.fasta ----------------AAAGUAAAAUGAUU---------------UUUCG d.16.c.H.akashiwo.fasta --UAUAACUUGUAUAAUUAAUAGGUGAAAA------G------UUUUCUG d.16.c.S.pseudocostatum.fasta --------UCGAGUGA--AAUGGAUUUAUA------U------UUAUCCG d.16.c.P.littoralis.fasta --UAUGAGACAUAUCAUAACUAUGAAAGAA------G------AAAUUCG d.16.c.C.caldarium.fasta ------------AUUAUUGGUG-AAAAAGA------U------UUAUCUG a.16.c.E.huxleyi.fasta ----------------GAGGUGAAAUAGUU-------------UCAACUG d.16.c.E.gracilis.fasta --UCUAUGUGAGUAGCUAGUUAAAGAGAAU----------------UUCG d.16.b.Anabaena.sp.fasta -----AGGUGAAAGAUUUAUU----------------------------G d.16.b.Chlorogloeopsis.PCC7518 -----AGGUGAAAGGGAGACC----------------------------G d.16.b.Synechococcus.sp.fasta -----AGGUGAAACAUUUAUG----------------------------G d.16.b.Synechocystis.PCC6803.G -----AGGUGAAAGAUUUAUC----------------------------G d.16.b.O.agardhii.fasta -----AGGUAAAAGAUUAAUC----------------------------G d.16.b.Pleurocapsa.7516.fasta -----AGCUGAAA--UUAUUUA---------------------------G d.16.b.M.aeruginosa.fasta -----AGGUGAAAC-CUAAUUG---------------------------G b.16.m.C.reinhardtii.fasta -------------------------------------------------- d.16.m.C.eugametos.fasta -------------------------------------------------- b.16.m.M.senile.fasta -------------------------------------------------- d.16.b.S.pneumoniae.fasta ----GUUGCAUGACAUUUGCUUAAAAGGUGCAC-UUG------CAUCACU d.16.b.S.pyogenes.fasta ----AACGCAUGUNAGU-AUUUAAAAGGGGCAA-UUG------CUNCACU d.16.b.B.anthracis.fasta ----CGCAUGGUUCGAAAUUGAAAGGCGGCUUC-GGC------UGUCACU d.16.b.B.cereus.1.fasta ----CGCAUGGUUCGAAAUUGAAAGGCGGCUUC-GGC------UGUCACU d.16.b.E.faecalis.fasta ----CGCAUGGCAUAAGAGUGAAAGGCGCUUUC-GGG------UGUCGCU d.16.b.E.faecium2.fasta ----CGCAUGGUUUUGAUUUGAAAGGCGCUUUC-GGG------UGUCGCU d.16.b.L.monocytogenes.fasta ----CGCAUGCCACGCUUUUGAAAGAUGGUUUC-GGC------UAUCGCU d.16.b.B.subtilis.fasta ----CGCAUGGUUCAAACAUAAAAGGUGGCUUC-GGC------UACCACU d.16.b.B.subtilis.GEN.fasta ----CGCAUGGUUCAAACAUAAAAGGUGGCUUC-GGC------UACCACU d.16.b.B.halodurans.fasta ----UGCAUGGUUCUUUUUUGAAAGAUGGUUUC-GGC------UAUCACU d.16.b.S.aureus.fasta ----CGCAUGGUUCAAAAGUGAAAGACGGUCUU-G-C------UGUCACU d.16.b.S.aureus.GEN.fasta ----CGCAUGGUUCAAAAGUGAAAGACGGUCUU-G-C------UGUCACU d.16.b.L.lactis.GEN.fasta ----CACAAGUUUUAAGUUUGAAAGAUGCAAUU-G--------CAUCACU d.16.b.S.pyogenes.GEN.fasta ----CGCAUGUUAGUAAUUUAAAAGGGGCAAUU-G--------CUCCACU d.16.b.L.acidophilus.fasta ----CGCAUGAUCAGCUUAUAAAAGGCGGCGUA-AGC------UGUCGCU d.16.b.M.capricolum.fasta ----AUCGCAUGAGAAAAGAUCAAAAGAACCGU-UUG------GUUCACU d.16.b.M.mycoides.fasta ----AUCGCAUGAGAAAAGAUCAAAAGAACCGU-UUG------GUUCACU d.16.b.E.rhusiopathiae.fasta ----AAGACAUCUUAGAUUAAUUAAAGA-UGGG-AUA------CAUCACA d.16.b.C.innocuum.fasta ----AGCGCAUGCUCUGUAUAUUAAAGCGCCCU-UCA------AGGCGUG d.16.b.M.genitalium.fasta ---UCGCAUGAAUUAAAGUUGAAAG--GACCUG-CAA------GGGUUCG d.16.b.M.pneumoniae.GEN.fasta ---UCGCAUGAAUCAAAGUUGAAAG--GACCUG-CAA------GGGUUCG d.16.b.M.pneumoniae.fasta ---UCGCAUGAAUCAAAGUUGAAAG--GACCUG-CAA------GGGUUCG d.16.b.M.gallisepticum.fasta ---UCGCAUGAGAAUAACUUUAAAG--AAGCAA-C--------UGCUUCG d.16.b.U.urealyticum.fasta ---UCGCAUGAGAAGAUGUAGAAAGUCGCUCUU-UGU------GGCGACG d.16.b.U.urealyticum.GEN.fasta ---UCGCAUGAGAAGAUGUAGAAAGUCGCUCUU-UGU------GGCGACG d.16.b.M.hyopneumoniae.fasta ---UUGCAUGAAUUUUUAUUCAAAG--GAGCCU-UCA------AGCUUCA d.16.b.F.necrophorum.fasta ---UCGCAUGGAGGAAUCAUGAAAG----------CU------AGAUGCG d.16.b.F.nucleatum.fasta ---GGGCAUCCUAGAAUUAUGAAAG----------CU------AUAUGCG d.16.b.S.moniliformis.fasta ---AGGCAUCUACUAUUAAUGAAAG----------GA------GAGAUUG d.16.b.C.botulinum.F.fasta ---UCGCAUGAUUUUCUUAUCAAAGAUUUA-----------------UUG d.16.b.C.tetani.fasta ---UCGCAUGAAACUUUAACCAAAGGAGUAA---------------UCUG d.16.b.C.perfringens.fasta ---UGGCAUCAUCAUUCAACCAAAGGAGCAA---------------UCCG d.16.b.C.difficile.fasta ---AGGCAUCUCUUGAAUAUCAAAGGUGAG-----------------CCA d.16.b.E.brachy.fasta ---GUGCAUGCUAGGUAGGUCAAAGAUUUA-----------------UCG d.16.b.Epulopiscium.sp.fasta ---UCGCAUGGGGAGAAUGGCAAAGAUUUA-----------------UCG d.16.b.H.chlorum.fasta ---GGACAUCCUUCAGGAACCAAAGGAGCAA---------------UCCG b.16.m.G.max.fasta GGGCCAAAUCCUGAA-----GAAAGCUAAAA---------------AGCG b.16.m.O.berteriana.fasta GGGCCAAAUCCUGAA-----GAAAGCUAAAA---------------AGCG b.16.m.S.cereale.fasta GGGCCAAAUCCUGAA-----GAAAGCUCAAA---------------AGCG b.16.m.T.aestivum.fasta GGGCCAAAUCCUGAA-----GAAAGCUCAAA---------------AGCG d.16.m.Z.mays.fasta GGGCCAAAUCCUGAA-----GAAAGCUCAAA---------------AGCG b.16.m.M.polymorpha.fasta GGGACAAAUCCCGAAUAAACGAAAGCUAAAA---------------GGCG b.16.m.N.olivacea.fasta -------------AA------AAAACUAAGU---------------GUUG d.16.b.G.liquefaciens.fasta ---------------------AAAGGCGCGA---------------GUCG d.16.b.B.japonicum.fasta -------------------GGAAAGAUUUA-----------------UCG d.16.b.R.acidophilus.fasta -------------------GGAAAGAUUUA-----------------UCG d.16.b.A.caulinodans.fasta -------------------GGAAAGAUUUA-----------------UCG d.16.b.B.quintana.fasta -------------------AGAAAGAUUUA-----------------UCG d.16.b.M.loti.fasta -------------------AGAAAGAUUUA-----------------UCG d.16.b.A.tumefaciens.fasta -------------------GGAAAGAUUUA-----------------UCG d.16.b.B.bacilliformis.fasta -------------------AGAAAGAUUUA-----------------UCG d.16.b.B.henselae.fasta -------------------AGAAAGAUUUA-----------------UCG d.16.b.B.melitensis.fasta -------------------GGAAAGAUUUA-----------------UCG d.16.b.R.orientis.fasta -------------------GGAAAGAUUUA-----------------UCG d.16.b.Methylobacterium.sp.fas -------------------GGAAAGGUUUA-----------------CUG d.16.b.R.bellii.fasta -------------------GGAAAGAUUUA-----------------UCG d.16.b.R.felis.URRWXCal2.fasta -------------------GGAAAGAUUUA-----------------UCG d.16.b.R.prowazekii.fasta -------------------GGAAAGAUUUA-----------------UCG d.16.b.R.prowazekii.GEN.fasta -------------------GGAAAGAUUUA-----------------UCG d.16.b.R.rickettsii.fasta -------------------GGAAAGAUUUA-----------------UCG d.16.b.A.calcoaceticus.fasta AAAGCA------GGGGAUCUCCGGACCUUG------------------CG d.16.b.P.pacificensis.fasta AAAGCA------GGGGAUCAUUAGACCUUG------------------CG d.16.b.C.marismortui.fasta AAAGCG------GGGGCUCUUCGGACCUCG------------------CG d.16.b.H.halodenitrificans.fas AAAGCA------GGGGAUCUUCGGACCUUG------------------CG d.16.b.P.aeruginosa.fasta AAAGGG------GGGGAUCCUCGGACCUCA------------------CG d.16.b.P.aeruginosa.GEN.fasta AAAGUG------GGGGAUCUUCGGACCUCA------------------CG d.16.b.Pseudomonas.sp.fasta AAAGCA------GGGGACCUUCGGGCCUUG------------------CG d.16.b.P.putida.fasta AAAGCG------GGGGACCUUCGGGCCUUG------------------CG d.16.b.C.burnetii.fasta AAAGCG------GGGGAUCUUCGGACCUCG------------------UG d.16.b.M.capsulatus.fasta AAAGCG------GGGGAUCUUCGGACCUCG------------------CG d.16.b.L.pneumophila.1.fasta AAAGCU------GGGGACCUUCGGGCCUGG------------------CG d.16.b.L.pneumophila.2.fasta AAAGCU------GGGGACCUUCGGGCCUGG------------------CG d.16.b.A.vinosum.fasta AAAGGG------GG----CUUCGG--CUCU------------------CG d.16.b.Beggiatoa.sp.fasta AAAGGG------GG----CUUCGG--CUCU------------------CG d.16.b.A.hydrophila.fasta AAAGGA------GGGGACCUUCGGGCCUUU------------------CG d.16.b.S.putrefaciens.fasta AAAGGA------GGGGACCUUCGGGCCUUC------------------CG d.16.b.C.freundii.fasta AAAGAG------GGGGACCUUCGGGCCUCU------------------UG d.16.b.S.dysenteriae.1.fasta AAAGAG------GGGGACCUUCGGGCCUCU------------------UG d.16.b.K.pneumoniae.fasta AAAGUG------GGGGACCUUCGGGCCUCA------------------UG d.16.b.P.shigelloides.fasta AAAGUG------GGGGCUCUUCGGACCUCA------------------UG d.16.b.Y.pestis.fasta AAAGUG------GGGGACCUUAGGGCCUCA------------------CG d.16.b.Y.pseudotuberculosis.fa AAAGUG------GGGGACCUUAGGGCCUCA------------------CG d.16.b.S.dysenteriae.2.fasta AAAGAG------GGGGACCUUCGGGCCUCU------------------UG d.16.b.E.coli.0157G.GEN.fasta AAAGAG------GGGGACCUUCGGGCCUCU------------------UG d.16.b.E.coli.EDL.GEN.fasta AAAGAG------GGGGACCUUCGGGCCUCU------------------UG d.16.b.E.coli.fasta AAAGAG------GGGGACCUUCGGGCCUCU------------------UG d.16.b.E.coli.K12.GEN.fasta AAAGAG------GGGGACCUUCGGGCCUCU------------------UG h.16.b.E.coli.hlxnum.fasta AAAGAG------GGGGACCUUCGGGCCUCU------------------UG m.16.b.E.coli.mhg.fasta AAAGAG------GGGGACCUUCGGGCCUCU------------------UG s.16.b.E.coli.schem.fasta AAAGAG------GGGGACCUUCGGGCCUCU------------------UG d.16.b.S.typhimurium.fasta AAAGAG------GGGGACCUUCGGGCCUCU------------------UG d.16.b.S.marcescens.fasta AAAGAG------GGGGACCUUCGGGCCUCU------------------UG d.16.b.E.tarda.fasta AAAGUG------GGGGACCUUCGGGCCUCA------------------UG d.16.b.P.vulgaris.fasta AAAGCA------GGGGCUCUUCGGACCUUG------------------CG d.16.b.V.cholerae4.fasta AAAGCA------GGGGACCUUCGGGCCUUG------------------CG d.16.b.V.cholerae5.fasta AAAGCA------GGGGACCUUCGGGCCUUG------------------CG d.16.b.V.cholerae2.fasta AAAGCA------GGGGACCUUCGGGCCUUG------------------CG d.16.b.V.cholerae6.fasta AAAGCA------GGGGACCUUCGGGCCUUG------------------CG d.16.b.V.cholerae.fasta AAAGCA------GGGGACCUUCGGGCCUUG------------------CG d.16.b.V.cholerae.GEN.fasta AAAGCA------GGGGACCUUCGGGCCUUG------------------CG d.16.b.V.parahaemolyticus.fast AAAGAG------GGGGACCUUUGGGCCUCU------------------CG d.16.b.H.influenzae7.fasta AAAGUG------CGGGACUGAGAGGCCGCA------------------UG d.16.b.H.influenzae8.fasta AAAGUG------UGGGACCUUCGGGCCACA------------------UG d.16.b.H.influenzae6.fasta AAAGUG------UGGGACCUUCGGGCCACA------------------UG d.16.b.H.influenz.fasta AAAGUG------CGGGACUGAGAGGCCGCA------------------UG d.16.b.H.influenzae.fasta AAAGUG------CGGGACUGAGAGGCCGCA------------------UG d.16.b.P.multocida.fasta AAAGGG------UGGGACCUUAGGGCCACC------------------UG d.16.b.P.multocida.GEN.fasta AAAGGG------UGGGACCUUAGGGCCACC------------------UG d.16.b.X.albilineans.fasta AAAGCG------GAGGACCUUCGGGCUUCG------------------CG d.16.b.X.campestris.fasta AAAGCG------GAGGACCUUCGGGCUUCG------------------CG d.16.b.X.fastidiosa.GEN.fasta AAAGCA------GGGGACCUUAGGGCCUUG------------------UG d.16.b.D.nodosus.fasta AAAGCG------GGGGCUCGAAAGACCUCG------------------CG d.16.b.F.tularensis.fasta AAAGGU------GG----CUUUCGGCGUGU------------------CG d.16.b.B.parapertussis.fasta AAAGCG------GGGGACCUUCGGGCCUCG------------------CA d.16.b.B.pertussis.fasta AAAGCG------GGGGACCUUCGGGCCUCG------------------CA d.16.b.B.bronchiseptica2.fasta AAAGCG------GGGGACCUUCGGGCCUCG------------------CA d.16.b.u.proteobacterium.fasta AAAGCG------GGGGAUCUUCGGACCUCG------------------CG d.16.b.B.mallei.fasta AAAGCG------GGGGACCUUCGGGCCUCG------------------CG d.16.b.Burkholderia.sp.fasta AAAGCG------GGGGAUCUUAGGACCUCG------------------CG d.16.b.N.meningitidis.MD58.GEN AAAGCA------GGGGACCUUCGGGCCUUG------------------CG d.16.b.N.meningitidis.Z2491.GE AAAGCA------GGGGACCUUCGGGCCUUG------------------CG d.16.b.N.gonorrhoeae.fasta AAAGCA------GGGGACCUUCGGGCCUUG------------------CG d.16.b.C.testosteroni.fasta AAAGCA------GGGGACCUUCGGGCCUUG------------------UG d.16.b.D.desulfuricans.fasta ---GAACUUUUUGAGGAAAGAUGGCCUCUGCUUGCAU------GCUAUCA d.16.b.M.xanthus.fasta UUCGGAGACUGAGGGAAAAGGUGGCCUCUGUAUACAA------GCUAUCA d.16.b.D.thermophilus.fasta UGCAUGGCAUGUGUGAAAAGGCAGGCAUU------AA------GCUUGCG d.16.b.B.burgdorferi.fasta -UUGUUAAUUGAUGAAAGGAAGCCUUUAAAG-------------CUCUCG d.16.b.B.burgdorferi.GEN.fasta -UUGUUAAUUGAUGAAAGGAAGCCUUUAAAG-------------CU-UCG d.16.b.B.hermsii.fasta -AUGUUAAUUGAUGAAAGGAAGCCUUUAAAG-------------CU-UCG d.16.b.S.aurantia.fasta -ACUUUGGUUUUGUUAGUAAAGGUGCUACGG-------------CA-CCG d.16.b.T.pallidum.A.fasta -ACGUAGUCUUUGAGAGGAAAGGGGCUGCGG-------------CC-UCG d.16.b.L.illini.fasta -CCACGGUAAUUAUGGUCAAAGCAGCAAUG------------------CG d.16.b.L.interrogans.fasta -UCACAAGAUUUUUCGGGUAAAGAUUUAU-------------------UG d.16.b.C.trachomatis.GEN.fasta UCCGAGUAACGUUAAAGAAGGGGAUCUUAGGAC-----------CUUUCG d.16.b.C.trachomatis.L2.fasta UCCGAGUAACGUUAAAGAAGGGGAUCUUAGGAC-----------CUUUCG d.16.b.C.muridarum.fasta UCUAAAUUACGUUAAAGAAGGGGAUCUUCGGAC-----------CUUUCG d.16.b.C.pneumoniae.AR39.fasta UCUAAUAUAUAUUAAAGAAGGGGAUCUUCGGAC-----------CUUUCG d.16.b.C.pneumoniae.fasta UCUAAUAUAUAUUAAAGAAGGGGAUCUUCGGAC-----------CUUUCG d.16.b.C.pneumoniae.J138.fasta UCUAAUAUAUAUUAAAGAAGGGGAUCUUCGGAC-----------CUUUCG d.16.b.C.pneumoniae.CWL029.fas UCUAAUAUAUAUUAAAGAAGGGGAUCUUCGGAC-----------CUUUCG d.16.b.C.psittaci.fasta UCUAAAACAUAUUAAAGAAGGGGAUCUUCGGAC-----------CUUUCG d.16.b.D.radiodurans.1.fasta -CCGUGGCAAAUCA-----------CUAAAGAU-----------UUAUCG d.16.b.D.radiodurans.GEN.fasta -CCGUGGUGCAUCA-----------CUAAAGAU-----------UUAUCG d.16.b.B.fragilis.fasta ---UCCGCAUGGUUUCAUUAUUAAAG---GA-------------UUCCGG d.16.b.P.gingivalis.fasta ---AUUGCAUGAUAUUACAAGGAAAU---AU-------------UUAUAG d.16.b.C.vibrioforme.fasta ---ACCGCAUGGUUAUGUUGUUAAAUC--AG-------------GAAUGG d.16.b.C.jejuni.fasta ---ACACAAGUUGAGUAGGGAAAGUU-------------------UUUCG d.16.b.C.jejuni.GEN.fasta ---ACACAAGUUGAGUAGGGAAAGUU-------------------UUUCG d.16.b.C.sputorum.fasta ---GAAAUAUCUUAAUAUAUAUUAUUAAGAG-------------CUUUCG d.16.b.H.pylori.26695.GEN.fast ---GGGGGA-----------AAGAUU-------------------UAUCG d.16.b.H.pylori.J99.GEN.fasta ---GGGGGA-----------AAGAUU-------------------UAUCG d.16.b.H.pylori2.fasta ---GGGGGA-----------AAGAUU-------------------UAUCG d.16.b.A.capsulatum.fasta ---------GGAGCAAUUCG----------------------------CU d.16.b.H.foetida.fasta UGCCUG--UGGUGAAAGCCGGGGACCGUAAGGC-----------CUGGCG d.16.b.A.globiformis.fasta UGGUGG-GGGGUGGAAAGC--------UUUUUG---------------UG d.16.b.M.luteus.fasta UGGUGG-GUGUUGGAAAGA--------UUUAU----------------CG d.16.b.Frankia.sp.fasta UCUGGU-GGUGUGGAAAGA--------UUUAU----------------CG d.16.b.S.bottropensis.fasta UCCGAUGAGUGUGGAAAGC--------UCCGG----------------CG d.16.b.S.scabiei.fasta UCCGAUGAGUGUGGAAAGC--------UCCGG----------------CG d.16.b.S.neyagawaensis.fasta UCCGAUGUGCGUGGAAAGC--------UCCGG----------------CG d.16.b.S.diastatochromogenes.f UCUCUUGGUGGUGGAAAGC--------UCCGG----------------CG d.16.b.Streptomyces.sp.fasta UG-GGGGUGGGUUCAAAGC--------UCCGG----------------CG d.16.b.S.acidiscabies.fasta UG-GGCGGGGGUCGAAAGC--------UCCGG----------------CG d.16.b.S.griseus.fasta UGGGACGGGG-UUAAAAGC--------UCCGG----------------CG d.16.b.S.ornatus.fasta UGGGACGGGGGUUAAAAGC--------UCCGG----------------CG d.16.b.S.subrutilus.fasta UGGG-CAGGGGUUGAAAGC--------UCCGG----------------CG d.16.b.S.bikiniensis.fasta UCUUCUCGGG-UGGAAAGC--------UCCGG----------------CG d.16.b.S.galbus.fasta UCCU-UGAUGGUGUAAAGC--------UCCGG----------------CG d.16.b.S.hygroscopicus.fasta UCUG-UGAGGGUUGAAAGC--------UCCGG----------------CG d.16.b.S.lincolnensis.fasta UCUG-UGGUGGUUGAAAGC--------UCCGG----------------CG d.16.b.S.coelicolor.fasta UCU-GCGAGGUUCGAAAGC--------UCCGG----------------CG d.16.b.S.tendae.fasta UCU-GCGAGGUUCGAAAGC--------UCCGG----------------CG d.16.b.S.ambofaciens.fasta UCC-AGGCGGUUCGAAAGC--------UCCGG----------------CG d.16.b.S.eurythermus.fasta UCU-UGGAGGUUGGAAAGC--------UCCGG----------------CG d.16.b.S.nodosus.fasta UCU-CCCUGGUUGGAAAGC--------UCCGG----------------CG d.16.b.S.sampsonii.fasta UGG-UGGAUGGUGUAAAGC--------UCCGG----------------CG d.16.b.S.glaucescens.fasta UCC-UUGAUGAUCGAAAGC--------UCCGG----------------CG d.16.b.S.pseudogriseolus.fasta UCU-UGGAUGAUCGAAAGC--------UCCGG----------------CG d.16.b.S.caelestis.fasta UCC-AAGGUGUUCGAAAGC--------UCCGG----------------CG d.16.b.S.bluensis.fasta UCUGUGGGUGGUGGAAAGC--------UCCGG----------------CG d.16.b.S.espinosus.fasta UCUCCUCGGUGUGGAAAGC--------UCCGG----------------CG d.16.b.S.mashuensis.fasta UGGUCCGCGUGUGGAAAGC--------UCCGG----------------CG d.16.b.S.rimosus.fasta UGGUCUGUGUGUGGAAAGC--------UCCGG----------------CG d.16.b.S.limosus.fasta UGGUGG-AUGGUGUAAAGC--------UCCGG----------------CG d.16.b.S.odorifer.fasta UGGUGG-AUGGUGUAAAGC--------UCCGG----------------CG d.16.b.S.felleus.fasta UGGUGG-AUGGUGUAAAGC--------UCCGG----------------CG d.16.b.S.albidoflavus.fasta UGGUGG-AUGGUGUAAAGC--------UCCGG----------------CG d.16.b.S.gougerotii.fasta UGGUGG-AUGGUGUAAAGC--------UCCGG----------------CG d.16.b.S.rutgersensis.fasta UGGUGG-AUGGUGUAAAGC--------UCCGG----------------CG d.16.b.S.intermedius.fasta UGGUGG-AUGGUGUAAAGC--------UCCGG----------------CG d.16.b.S.thermodiastaticus.fas UCUCAUGGUGGUGGAAAGC--------UCCGG----------------CG d.16.b.S.thermoviolaceus.fasta UCUCCUCUGUGUGGAAAGC--------UCCGG----------------CG d.16.b.S.thermovulgaris.1.fast UGGUCU-UGGGUGGAAAGC--------UCCGG----------------CG d.16.b.S.thermovulgaris.2.fast UGGUCU-UGGGUGGAAAGC--------UCCGG----------------CG d.16.b.S.macrosporus.fasta UCUUCG-GUGGUGGAAAGC--------UCCGG----------------CG d.16.b.S.megasporus.fasta UCCUCG-GGGGUGGAAAGC--------UCCGG----------------CG d.16.b.S.thermolineatus.fasta UCUUGG-GGGGUGGAAAGC--------UCCGG----------------CG d.16.b.M.tuberculosis.2.fasta UGUCUU-GUGGUGGAAAGCGC------UUUAG----------------CG d.16.b.M.tuberculosis.3.fasta UGUCUU-CUGGUGGAAAGCGC------UUUAG----------------CG d.16.b.M.avium.fasta UGUCUU-CUGGUGGAAAGC--------UUUUG----------------CG d.16.b.M.leprae.fasta UGUCUU-GUGGUGGAAAGCUU------UUU-G----------------CG d.16.b.M.leprae.GEN.fasta UGUCUU-GUGGUGGAAAGCUU------UUU-G----------------CG d.16.b.M.tuberculosis.CDC1551. UGUCUU-GUGGUGGAAAGCGC------UUUAG----------------CG d.16.b.M.tuberculosis.GEN.fast UGUCUU-GUGGUGGAAAGCGC------UUUAG----------------CG d.16.b.N.asteroides.fasta UGUCUG-AGGGUGGAAAGA--------UUUAU----------------CG d.16.b.R.erythropolis.fasta UGGUGG-GUGGUGGAAAGA--------UUUAU----------------CG d.16.b.C.diphtheriae.fasta GUGUGU-GUGGUGGAAAG---------UUUUU----------------CG d.16.b.A.israelii.fasta UGGUGUGGCUGGGAAAGAUUCACUUU-UGUGGU-----------GUUUUG d.16.b.B.hyodysenteriae.fasta AGUAGA-GUAGAGGAAAGG--------AGCAAU-----------C---CG d.16.b.G.subterranea.fasta ----GAUAAAAUCGAGAGAUAAAAGCU---UAGAAGC------GCCG-GG d.16.b.P.miotherma.fasta ----NAUAAGCCCGAGAGGGGAAAGUG---GGNGUCA------GCCU-UG d.16.b.B.andersonii.fasta ----GAUGAUAUCGAGAGAUCAAAG-G---GGCGUUU------GCCU-UA d.16.b.H.aurantiacus.fasta AUACGAUNGCCUCGGCGGAGGAAAGCC----GUAAGG-----------CG d.16.b.Leptospirillium.sp.fast GUGAAGGGGACCGGGGAAAGGGAGGCCUCUGGUACAA------GCUUCCG d.16.b.A.aeolicus.fasta AGGCGCGGUGGCCAAAGGGGGCCUCUGGCCUUCGGCCA----CGCUCCCG d.16.b.A.pyrophilus.fasta AGGCGAGGCGGCCAAAGGGGGCCUCUGGGCUCUGCCCA----AGCUCCCG d.16.b.T.maritima.fasta ACGCAAGUUGGUGGAGGAAAGG----GGCGUUUGCCC-----------CG d.16.b.T.maritima.GEN.fasta ACGCAAGUUGGUGGAGGAAAGG----GGCGUUUGCCC-----------CG n.16.b.T.thermophilus.2.num.fa -GACCCGCCCCUUGGGGUGUGUCCAAAGGGCUUUGCC-----------CG s.16.b.T.thermophilus.2.schem. -GACCCGCCCCUUGGGGUGUGUCCAAAGGGCUUUGCC-----------CG d.16.b.T.thermophilus.2.fasta -GACCCGCCCCUUGGGGUGUGUCCAAAGGGCUUUGCC-----------CG s.16.b.T.thermophilus.1.schem. -GACCCGCCCCUUGGGGUGUGUCCAAAGGGCUUUGCC-----------CG n.16.b.T.thermophilus.1.num.fa -GACCCGCCCCUUGGGGUGUGUCCAAAGGGCUUUGCC-----------CG d.16.b.T.thermophilus.1.fasta -GACCCGCCCCUUGGGGUGUGUCCAAAGGGCUUUGCC-----------CG d.16.b.T.aquaticus.fasta -GACACAUCCUGUGGGGUGUGUUUAAAGGGUUUUGCC-----------CG d.16.b.T.roseum.fasta CGGUGGGCCGGCCAAGGAAAGGCGCAGGCGACUGUGC-----------UG d.16.b.P.marina.fasta -----------ACGGAU---CAAAGUUCCGG-----------------CG d.16.b.P.staleyi.fasta -----------CCGAAC---CAAAGGUGUGAUU--------------CCG d.16.b.P.Schlesner.fasta -----------CCGGAU---CAAAGGUGUGAUU--------------CCG d.16.b.G.obscuriglobus.1.fasta -----------UGAGAG---CAAAGAUUCAU-----------------CG d.16.b.I.pallida.fasta --------AUCUGAGACACGCAAAGGUGCAAUU--------------CCG d.16.a.P.abyssi.fasta AA-GGUCCCCAGGCCGAAAGGGAGCCGUAAGGCU-------------CCG d.16.a.P.horikoshii.fasta AA-GGUCCCCAGGCCGAAAGGGAGCCGUAAGGCU-------------CCG d.16.a.P.furiosus.fasta AA-GGUCCCCAGGCCGAAAGGGAGCCGUAAGGC--------------CCG d.16.a.T.celer.fasta AA-GGUCCUCAGGCCGAAAGGGGCUCU----GC--------------CCG d.16.a.A.fulgidus.fasta AA-UGUCCCAUCUCCGAAAGCGCUUAG---------------------CG d.16.a.N.equitans.fasta AA-GGCCCCAUCCCCGAGAGGGGCUAGCGGUACUUCCC-CCGCUAGCCCG d.16.a.A.pernix.K1.fasta AA-GGGUCCUCCGCCGAAAGGGGCCGCGGGGGGUUAUCGCCCGCGGUCCG d.16.a.P.occultum.fasta AACGGGUCCCUCGCCGAAAGGGCGCGCGGAGCCUC----CCCGCGCGCCG d.16.a.T.tenax.fasta AA-GGCCCCUUCCUCCAAAGGGAUCGCGGGCGAUCU---CCCGCGGUCCG d.16.a.S.acidocaldarius.fasta AAUGGUUCCUUC--CCUAAAGGGCUAUAGGCUAUUUCCCGUUUGUAGCCG d.16.a.S.solfataricus.fasta AAUGGUUCCUUC--CCUAAAGGGCUAUAGGCUAUUUCCCGUUUGUAGCCG d.16.a.S.solfataricus.2.fasta AACGGUUCCUCG--CUGAAAGGCUCAUGGGCUAUUCCCCGCUCAUGAGCG d.16.a.M.thermautotrophicus.1. AAUGGUUCUUCA-CCGAAACACCUUCGGG-------------------UG d.16.a.M.thermautotrophicus.2. AAUGGUUCUUCA-CCGAAACACCUUCGGG-------------------UG d.16.a.M.formicicum.fasta AAUGGUUCCCUA-UUGAAAUG--UUCCGA-------------------CG d.16.a.M.vannielii.fasta AACGAUUCUUUU-CUGAAAG---CAUAUG-------------------CG d.16.a.H.marismortui.rrnA.fast AG-UGCCGAGAGUUAGAAACGUUCCGG---------------------CG d.16.a.H.marismortui.rrnB.fast AG-UGCAGAGAGUUAGAAACGUUCCGG---------------------CG d.16.a.Halobacterium.sp.fasta AA-GGGGCAAAGCCGGAAACGCUCCGG---------------------CG d.16.a.N.bangense.fasta AACUGCUGGGAAUCCGAAACGCUCAGG---------------------CG d.16.a.N.innermongoliae.fasta AG-UGGAGAGAGUCCGAAACGCUCCGG---------------------CG d.16.a.H.volcanii.fasta AA-UGCCGACUCCCCGAAACGCUCAGG---------------------CG d.16.a.M.hungatei.fasta AA-UGUUAUGCGAACGAAA-GAUCCGU---------------------CG d.16.a.P.torridus.fasta AA-UGUUUG-GAUGGUGAAGGCUCCGG---------------------CG d.16.a.T.acidophilum.fasta AA-UGGUUGUAAUGAUGAAAGCUUCUG---------------------CA a.16.e.G.ardeae.fasta GCAGGCGUCGCGCGGC-G-CUGCUGCAGUUAA--------------AACG d.16.e.G.intestinalis.fasta GCGAGCGUCGCGCGGC-G-CUGCUGCAGUUGA--------------AACG a.16.e.G.muris.fasta GCAGGCGUCGUACGGC-G-CUGUUGCAGUUAA--------------AACG d.16.e.A.bracteata.fasta AGGAGCGU-GUGUGGU-GAUUGCUGCAGUUAA--------------AAGG d.16.e.Glomus.sp.W3349.fasta AACAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.S.cerradensis.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG a.16.e.G.intraradices.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.S.culisetae.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG a.16.e.P.balamuthi.fasta AAGAGUGUAUACUAA--AGCUGUUGCGGUUAA--------------AACG d.16.e.A.flavus.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.T.caries.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.M.circinelloides.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AACG d.16.e.M.racemosus.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AACG d.16.e.R.oryzae.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AACG a.16.e.M.edulis.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG a.16.e.P.magellanicus.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG b.16.e.E.granulosus.fasta AAUAGCGUAUAUUAA--AGUUGCUGCAGUUAA--------------AAAG d.16.e.D.melanogaster.fasta AAUAGCGUAUAUUAA--AGUUGUUGCGGUUAA--------------AACG b.16.e.C.koreana.fasta AAUAGCGUAUAUCAG--AAUUGUUGUGGUUAA--------------AAAG b.16.e.A.australis.fasta AAUAGCGUAUAUUAA--AGUUGUUGUGGUUAA--------------AAAG b.16.e.O.utahensis.fasta AAUAGCGUAUAUUAA--AGUUGUUGCGGUUAA--------------AAAG b.16.e.A.salina.fasta AAUAGCGUAUAUUAA--AGUUGCUGCGGUUAA--------------AAAG d.16.e.M.musculus.fasta AAUAGCGUAUAUUAA--AGUUGCUGCAGUUAA--------------AAAG d.16.e.R.norvegicus.fasta AAUAGCGUAUAUUAA--AGUUGCUGCAGUUAA--------------AAAG d.16.e.H.sapiens.fasta AAUAGCGUAUAUUAA--AGUUGCUGCAGUUAA--------------AAAG d.16.e.O.cuniculus.fasta AAUAGCGUAUAUUAA--AGUUGCUGCAGUUAA--------------AAAG d.16.e.X.borealis.fasta AAUAGCGUAUAUUAA--AGUUGCUGCAGUUAA--------------AAAG d.16.e.X.laevis.fasta AAUAGCGUAUAUUAA--AGUUGCUGCAGUUAA--------------AAAG d.16.e.A.castellanii.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.B.mandrillaris.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.P.falciparum.A.fasta AAUAGCGUAUAUUAA--AAUUGUUGCAGUUAA--------------AACG d.16.e.P.falciparum.S.fasta AAUAGCAUAUAUUAA--AAUUGUUGCAGUUAA--------------AACG d.16.e.P.vivax.A.fasta AAUAGCGUAUAUUAA--AAUUGUUGCAGUUAA--------------AACG d.16.e.P.vivax.O.fasta AAUAGCGUAUAUUAA--AAUCGUUGCAGUUAU--------------AAUG d.16.e.P.vivax.S.fasta AAUAGCGUAUAUUAA--AAUUGUUGCAGUUAA--------------AACG d.16.e.E.histolytica.fasta AAUAGUGUAUAUUAA--AGUUGCUGUGAUUAA--------------AACG d.16.e.I.hoferi.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.Dermocystidium.sp.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.S.destruens.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.A.unguiculata.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.D.grandis.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.A.macrogynus.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.B.emersonii.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.C.albicans.fasta AAAAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.S.cerevisiae.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.N.crassa.fasta AAUAGCGUAUAUUAA--AGUUGUUGAGGUUAA--------------AAAG d.16.e.P.anserina.fasta AAUAGCGUAUAUUAA--AGUUGUUGAGGUUAA--------------AAAG d.16.e.C.immitis.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.L.major.fasta AAAAGCGUAUAUUAA--UGCUGUUGCUGUUAA--------------AGGG d.16.e.T.cruzi.fasta AAAAGCGUAUAUUAA--UGCUGUUGCUGUUAA--------------AGGG d.16.e.T.brucei.fasta AAAAGCGUAUAUUAA--UGCUGUUGCUGUUAA--------------AGGG d.16.e.P.carinii.fasta AAUAGCGUAUAUUAA--AGUUGCUGCAGUUAA--------------AAAG d.16.e.C.neoformans.fasta AGUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.Fungus.sp.QPX.fasta AGUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.U.maydis.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.M.leidyi.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.T.cystophora.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.M.prolifera.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.P.haeckeli.fasta AAUAGCGUAUAUUGA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.E.rotunda.fasta AGUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.P.chromatophora.fasta AGUAGCGUAUAUUAA--AAUUGUUGCAGUUAA--------------AANG d.16.e.A.majus.fasta AAUAGCGUAUAUUUA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.S.indicum.fasta AAUAGCGUAUAUUUA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.D.grandiflora.fasta AAUAGCGUAUAUUUA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.Pla.lanceolata.fasta AAUAGCGUAUAUUUA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.N.tabacum.fasta AAUAGCGUAUAUUUA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.A.thaliana.fasta AAUAGCGUAUAUUUA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.S.alba.fasta AAUAGCGUAUAUUUA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.S.tuberosum.fasta AAUAGCGUAUAUUUA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.F.x.ananassa.fasta AAUAGCGUAUAUUUA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.G.max.fasta AAUAGCGUAUAUUUA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.O.sativa.fasta AAUAGCGUAUAUUUA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.Z.mays.fasta AAUAGCGUAUAUUUA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.A.verticilliflorum.fast AAUAGCG-AUAUUUA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.G.spirotaenia.fasta AAUAGCGUAUAUUUA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.Staurastrum.sp.M752.fas AAUAGCGUAUAUUUA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.C.paradoxa.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.G.nostochinearum.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.G.wittrockiana.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.C.luteoviridis.fasta AAUAGCGUAUAUUUA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.O.longa.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.P.weissei.fasta AAUAGCGUAUAUUAA--AUUUGUUGCAGUUAA--------------AAAG d.16.e.C.citrina.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.G.steinii.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.Ple.lanceolata.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.O.quadricornutus.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.S.lemnae.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.S.mytilus.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.E.mobilis.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.O.granulifera.1.fasta AAUAGCGUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.O.granulifera.2.fasta AAUAGCAUAUAUUAA--AGUUGUUGCAGUUAA--------------AAAG d.16.e.U.gallina.fasta AAUAGCAUAUAUUAA--AUUUGUUGCAGUUAA--------------AAAG d.16.e.U.pisces.fasta 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CCAGAAGAUGAGCUUGCGCCUGAUU------AGCUAGUUGGUGUGG-U-- d.16.c.P.minor.fasta CCAAGGGAUGGGCUUGCGUCUGAUU------AGCUAGUUGGUGAGG-U-- d.16.c.N.olivacea.fasta CCAAAGGAUGGGCUUGCGUCUGAUU------AGCUAGUUGGUGGGG-U-- d.16.c.P.parkeae.fasta CCUAAGGAGGGGCUUGCGUCUGAUU------AGUUAGUUGGUAGGG-U-- d.16.c.C.reinhardtii.fasta CCGAUAGAGGGGCUUGCGUCUGAUU------AGCUAGUUGGUGGGGGU-- b.16.m.A.castellanii.fasta CCUACAAUAGAGCUUCUAAAGGAUU------AGGUAGUUGUUGUAGUA-- d.16.c.P.thurberi.fasta UUAAUGAU-GAGCUUAUAUCUAAUU------AGUUUGUUGGCGGGGUA-- b.16.m.C.crispus.fasta UUUUAAGAAAAGUUUAUGUAAGAUU------AAGUUGUUGGUAAUUUA-- d.16.c.T.gondii.fasta UCUAAAAAAAAGCUCAUAUCUAAUU------AGCUAGUUGGUGAAGUA-- b.16.m.N.crassa.fasta ACUUAAAGUGAAGG--CAAAUCCUU------CAUAUUGCAAAAGGAUAUC b.16.m.P.anserina.fasta CCUAAAAGUAAAGG--CAAAUCCUU------UAUAGUAAUAAAGAACG-- b.16.m.P.chrysogenum.fasta CCUUAAAGUAAGGG--AAAAAAUCC------CUUAUAACCAAAGGUUA-- b.16.m.E.nidulans.fasta CCUUAAAGUAAGGGGAAAAAUCCCU------UAUAAAAAGAAAGGAAAA- b.16.m.S.cerevisiae.fasta -----AGUCAAGCCAAUAAUGGUUU------AGGUAGUAGGUUUAUUA-- b.16.m.W.saturnus.m.fasta AUAUUAGUCAAGCUAUUAGCAGUAU------AGGUAUUAUGUAGGAUA-- b.16.m.P.minor.fasta GUAC-GGGUGAGUUAA-AAAAAUUG------AAUUAAUA--UUCAAUU-- d.16.c.P.falciparum.fasta UUAA-AAUAAAAUUUAUAUUUGAUU------AACUAGUUGGUAAUUUA-- d.16.c.B.bovis.fasta -----AAUUAAUUCUAUUUUUGAUU------AGCUAUUUAAUAUUA-A-- b.16.m.T.pyriformis.fasta U----AAACAAUCAUAUAAUUCUUU------AA-AACCAAAAAAAUUA-- d.16.m.S.sinuspaulianus.fasta A----AAUUAUUUAAAUAA--CAAU------AA-UGUAAAAUAAAUGA-- b.16.m.P.tetraurelia.fasta AUUG-AACUCUUUUUUUGAUCCAAU------AGGAAAAAAGAUAUAGAGC b.16.m.D.discoideum.fasta UU---AUAAAAGCGUAUGUCGAAUU------AGGCAGUUGGUGGGGUA-- d.16.m.P.polycephalum.fasta GUCUGAGAGGAUGUACAGCCGCGUC------GGAAAUGCAAUAAGGUCCG b.16.m.P.littoralis.fasta CGCC--GGUUGGGGAUGAUUAGGUC------GAGUAUUAGGUAGUUGGUA b.16.m.P.wickerhamii.fasta AG---AGAUGAGCUUGCGUAAGAUU------AGGUAGUUGGUAAGGUA-- d.16.c.H.africana.fasta A----AGGUAAGGCU---UAUGUCU------AGUUAGUUGGUAAGGUA-- d.16.c.C.fragile.fasta CCCAGAAAUGAGCUUGCGUCUGAUU------AGCUAGUUGGUAAGAUA-- d.16.c.C.sertularioides.fasta CCAAAGGACGGGCUUGGGCCUGAUU------AGUUUGUUGGUAAGAUA-- d.16.c.C.humicola.fasta AUGAUAGCUGAGGAGUGAAAAGCG-------GGAAACCGCGCCAAAAGAG d.16.c.P.uvella.fasta GU-AUAGCUGAAGAGUUAUAGCGGUCUA--UAAAAACGGCGACUUGAGAU a.16.c.G.nostochinearum.fasta CCUGGAGAAGAGCUCGCGUCUGAUU------AGCUAGUUGGUAAGGUA-- a.16.c.G.wittrockiana.fasta CCUAGAGAAGAGCUCGCGUCUGAUU------AGCUAGUUGGUAAGGUA-- d.16.c.C.paradoxa.fasta CCUGAGGAANAGCUCGCGUCUGAUU------AGCUAGUUGGUGGGGUA-- d.16.y.C.paradoxa.fasta CCUGAGGAAGAGCUCGCGUCUGAUU------AGCUAGUUGGUGGGGUA-- d.16.c.Cryptomonas.sp.fasta CCUAAGGAAGAGCUCGCGUCUGAUU------AGCUAGUUGGUAGGGUA-- d.16.c.P.palmata.fasta CCCAGGGAUGAGCUCGCGCCUGAUU------AGCUAGUUGGUAAGAUA-- d.16.c.H.akashiwo.fasta CCUAGAGAGGAGCUCGCGGCUGAUU------AGCUAGUUGGUGGGGUA-- d.16.c.S.pseudocostatum.fasta CCUAGAGAGAAGCUCGCGGCUGAUU------AGCUUGUUGGUAAGGUA-- d.16.c.P.littoralis.fasta CCUAAAGAAAAGCUUGCGUCUGAUU------AGCUAGUUGGUAAGGGU-- d.16.c.C.caldarium.fasta CCUGGAGAUGAGCUCGCGGCUGAUU------AGCUAGUUGGUAGGGUA-- a.16.c.E.huxleyi.fasta CCUAAGGAUGAGCUCACGCCUGAUU------AGCUUGUUGGUGAGGUA-- d.16.c.E.gracilis.fasta CCUAGGCAUGAGCUUGCAUCUGAUU------AGCUUGUUGGUGAGGUA-- d.16.b.Anabaena.sp.fasta CCUGAAGAUGAGCUCGCGUCUGAUU------AGCUAGUUGGUGUGGUA-- d.16.b.Chlorogloeopsis.PCC7518 CCACAAGAGGAGCUCGCGUCCGAUU------AGCUAGAUGGUGGGGUA-- d.16.b.Synechococcus.sp.fasta CCUGUAGAUGAGCUCGCGUCUGAUU------AGCUAGUUGGUGGGGUA-- d.16.b.Synechocystis.PCC6803.G UCUGAAGAUGGGCUCGCGUCUGAUU------AGCUAGAUGGUGGGGUA-- d.16.b.O.agardhii.fasta CCUAGAGAGGGGCUUGCGUCUGAUU------AGCUAGUUGGUGAGGUA-- d.16.b.Pleurocapsa.7516.fasta CCUUGAGAGGAGCUCGCGUCCGAUU------AGUUAGUUGGUGGUGUA-- d.16.b.M.aeruginosa.fasta CCUGGAGAAGAGCUUGCGUCUGAUU------AGCUAGUUGGUGGGGUA-- b.16.m.C.reinhardtii.fasta ---A--GCUGGG--UC----------------GCGA-CGC-CA-AUAC-- d.16.m.C.eugametos.fasta ---A--GAUGGGAAUG----------------AUGAAUGUAUA-UUAU-- b.16.m.M.senile.fasta ---A--GGUAGAA--G----------------GUG---GUGUA-AAAG-- d.16.b.S.pneumoniae.fasta ACCA--GAUGGACCUNCGUUGUA------UUAGCUAGUUGGUG-GGGU-- d.16.b.S.pyogenes.fasta AUGA--GAUGGACCUNCGUNGUA------UUAGCUAGUUGGUG-AGGU-- d.16.b.B.anthracis.fasta UAUG--GAUGGACCCGCGUCGCA------UUAGCUANUUGGUG-AGGU-- d.16.b.B.cereus.1.fasta UAUG--GAUGGACCCGCGUCGCA------UUAGCUAGUUGGUG-AGGU-- d.16.b.E.faecalis.fasta GAUG--GAUGGACCCGCGGUGCA------UUAGCUAGUUGGUG-AGGU-- d.16.b.E.faecium2.fasta GAUG--GAUGGACCCGCGGUGCA------UUAGCUAGUUGGUG-AGGU-- d.16.b.L.monocytogenes.fasta UACA--GAUGGGCCCNCGGUGCA------UUAGCUAGUUGGUA-GGGU-- d.16.b.B.subtilis.fasta UACA--GAUGGACCCGCGGCGCA------UUAGCUAGUUGGUG-AGGU-- d.16.b.B.subtilis.GEN.fasta UACA--GAUGGACCCGCGGCGCA------UUAGCUAGUUGGUG-AGGU-- d.16.b.B.halodurans.fasta UACA--GAUGGGCCCGCGGCGCA------UUAGCUAGUUGGUG-GGGU-- d.16.b.S.aureus.fasta UAUA--GAUGGAUCCGCGCUGCA------UUAGCUAGUUGGUA-AGGU-- d.16.b.S.aureus.GEN.fasta UAUA--GAUGGAUCCGCGCUGCA------UUAGCUAGUUGGUA-AGGU-- d.16.b.L.lactis.GEN.fasta CAAA--GAUGAUCCCGCGUUGUA------UUAGCUAGUUGGUG-AGGU-- d.16.b.S.pyogenes.GEN.fasta AUGA--GAUGGACCUGCGUUGUA------UUAGCUAGUUGGUG-AGGU-- d.16.b.L.acidophilus.fasta AUGG--NNUGGCCCCGCGGUGCA------UUAGCUAGUUGGUA-GGGU-- d.16.b.M.capricolum.fasta AUGA--GAUGGGGAUGCGGCGUA------UUAGCUAGUAGGUG-AGAU-- d.16.b.M.mycoides.fasta AUGA--GAUGGGGAUGCGGCGUA------UUAGCUAGUAGGUG-AGAU-- d.16.b.E.rhusiopathiae.fasta ACGA--GAUGGGCUUAUGGCGCA------UUAGUUAGUUGGUA-AGGU-- d.16.b.C.innocuum.fasta AACAUGGAUGGACCUGCGACGCA------UUAGCUAGUUGGUG-AGGU-- d.16.b.M.genitalium.fasta UUAUUUGAUGAGGGUGCGCCAUA------UCAGCUAGUUGGUA-GGGU-- d.16.b.M.pneumoniae.GEN.fasta UUAUUUGAUGAGGGUGCGCCAUA------UCAGCUAGUUGGUG-GGGU-- d.16.b.M.pneumoniae.fasta UUAUUUGAUGAGGGUGCGCCAUA------UCAGCUAGUUGGUG-GGGU-- d.16.b.M.gallisepticum.fasta CUAUAAGAUGAGGGUGCGGCAUA------UCAGCUAGUUGGUGAGGGU-- d.16.b.U.urealyticum.fasta CUUUUGGAUGAGGGUGCGACGUA------UCAGAUAGUUGGUG-AGGU-- d.16.b.U.urealyticum.GEN.fasta CUUUUGGAUGAGGGUGCGACGUA------UCAGAUAGUUGGUG-AGGU-- d.16.b.M.hyopneumoniae.fasta CCAAGAAAUGGGGGUGCGCAACA------UUAGUUAGUUGGUA-GGGU-- d.16.b.F.necrophorum.fasta CUAAGAGAGAGCUUUGCGUCCCA------UUAGCUAGUUGGUG-AGGU-- d.16.b.F.nucleatum.fasta CUGUGAGAGAGCUUUGCGUCCCA------UUAGCUAGUUGGAG-AGGU-- d.16.b.S.moniliformis.fasta CUAAGAGAGAGCUUUGCAUCCUA------UUAGCUAGUUGGUG-GGGU-- d.16.b.C.botulinum.F.fasta CUUUGAGAUGGACCCGCGGCGCA------UUAGCUAGUUGGUA-AGGU-- d.16.b.C.tetani.fasta CUUUGAGAUGGGCCCGCGCCCCA------UUAGCUAUUUGGUA-AGGU-- d.16.b.C.perfringens.fasta CUAUGAGAUGGACCCGCGGCGCA------UUAGCUAGUUGGUG-GGGU-- d.16.b.C.difficile.fasta GUACAGGAUGGACCCGCGUCUGA------UUAGCUAGUUGGUA-AGGU-- d.16.b.E.brachy.fasta GUAUGGGAUGGGCCUGCGUCUGACUGCCCUUAGCUAGUUGGUG-AGGU-- d.16.b.Epulopiscium.sp.fasta GUGUAAGAUGGACCUGCGGAAGA------UUAGCUAGUUGGUG-AGAU-- d.16.b.H.chlorum.fasta CUUUCCGAUGGGUCCACGUCCGA------UUAGCUAGUUGGUA-GGGU-- b.16.m.G.max.fasta CUGUUUGAUGAGCCUGCGUAGUAUU------AGGUAGUUGGUCAGGUA-- b.16.m.O.berteriana.fasta CUGUUUGAUGAGCCUGCGUAGUAUU------AGGUAGUUGGUCAGGUA-- b.16.m.S.cereale.fasta CUGUUUGAUGAGCCUGCGUAGUAUU------AGGUAGUUGGUCAGGUA-- b.16.m.T.aestivum.fasta CUGUUUGAUGAGCCUGCGUAGUAUU------AGGUAGUUGGUCAGGUA-- d.16.m.Z.mays.fasta CUGUUUGAUGAGCCUGCGUAGUAUU------AGGUAGUUGGUCAGGUA-- b.16.m.M.polymorpha.fasta CUGUUUGAUGAGCCUACAAAGCAUC------AGGUAGUUGGUUAGGUA-- b.16.m.N.olivacea.fasta UUAUUGGAUGAGCCUGCGGAGGAUU------AGGUAGUUGGUGAGGUA-- d.16.b.G.liquefaciens.fasta CCUGUGGAGGAGCCUGCGUUCGAUU------AGCUAGUUGGCGGGGUA-- d.16.b.B.japonicum.fasta CCGAAAGAUCGGCCCGCGUCUGAUU------AGCUAGUUGGUAGGGUA-- d.16.b.R.acidophilus.fasta CCGAAGGAGUGGCCCGCGUCCGAUU------AGCUAGUUGGUGAGGUA-- d.16.b.A.caulinodans.fasta CCAUUGGAUCAACCCGCGUCUGAUU------AGCUAGUUGGUGAGGUA-- d.16.b.B.quintana.fasta GAGGUGGAUGAGCCCGCGUUGGAUU------AGCUAGUUGGUGAGGUA-- d.16.b.M.loti.fasta GAGAUGGAUGAGCCCGCGUUGGAUU------AGCUAGUUGGUGGGGUA-- d.16.b.A.tumefaciens.fasta GGGUAUGAUGAGCCCGCGUUGGAUU------AGCUAGUUGGUGGGGUA-- d.16.b.B.bacilliformis.fasta GAGAUGGAUGAGCCCGCGUUGGAUU------AGCUAGUUGGUGAGGUA-- d.16.b.B.henselae.fasta GAGAUGGAUGAGCCCGCGUUGGAUU------AGCUAGUUGGUGAGGUA-- d.16.b.B.melitensis.fasta GCAAAUGAUCGGCCCGCGUUGGAUU------AGCUAGUUGGUGGGGUA-- d.16.b.R.orientis.fasta CCAAUGGAUGAGCCCGCGUUGGAUU------AGCUAGUUGGUGGGGUA-- d.16.b.Methylobacterium.sp.fas CCGGAAGAUCGGCCCGCGUCUGAUU------AGCUAGUUGGUGGGGUA-- d.16.b.R.bellii.fasta CUGAUGGAUGAGCCCGCGUCAGAUU------AGGUAGUUGGUGAGGUA-- d.16.b.R.felis.URRWXCal2.fasta CUGAUGGAUGAGCCCGCGUCAGAUU------AGGUAGUUGGUGAGGUA-- d.16.b.R.prowazekii.fasta CUGAUGGAUGGGCCCGCGUCAGAUU------AGGUAGUUGGUGAGGUA-- d.16.b.R.prowazekii.GEN.fasta CUGAUGGAUGGGCCCGCGUCAGAUU------AGGUAGUUGGUGAGGUA-- d.16.b.R.rickettsii.fasta CUGAUGGAUGAGCCCGCGUCAGAUU------AGGUAGUUGGUGAGGUA-- d.16.b.A.calcoaceticus.fasta CUAAAUGAUGAGCCUAAGUCGGAUU------AGCUAGUUGGUGGGGUA-- d.16.b.P.pacificensis.fasta CUAUUAGAUGAGCCUAAGUCGGAUU------AGCUAGAUGGUGGGGUA-- d.16.b.C.marismortui.fasta CGAUUGGAUGAGCCUAUGUCGGAUU------AGCUGGUUGGUGGGGUA-- d.16.b.H.halodenitrificans.fas CUAUCGGAUGAGCCUAUGCCGGAUU------AGUUAGUUGGUGAGGUA-- d.16.b.P.aeruginosa.fasta CUAUCNGAUGAGCCUAGGUCGGAUU------AGCUAGUUGGUGGGGUA-- d.16.b.P.aeruginosa.GEN.fasta CUAUCAGAUGAGCCUAGGUCGGAUU------AGCUAGUUGGUGGGGUA-- d.16.b.Pseudomonas.sp.fasta CUAUCAGAUGAGCCUAGGUCGGAUU------AGCUAGUUGGUGGGGUA-- d.16.b.P.putida.fasta CUAUCAGAUGAGCCUAGGUCGGAUU------AGCUAGUUGGUGAGGUA-- d.16.b.C.burnetii.fasta CUAUAAGAUGAGCCUACGUCGGAUU------AGCUUGUUGGUGGGGUA-- d.16.b.M.capsulatus.fasta CUAUAAGAUGAGCCUGCGUCGGAUU------AGCUAGUUGGUGGGGUA-- d.16.b.L.pneumophila.1.fasta CUUUAAGAUUAGCCUGCGUCCGAUU------AGCUAGUUGGUGGGGUA-- d.16.b.L.pneumophila.2.fasta CUUUAAGAUUAGCCUGCGUCCGAUU------AGCUAGUUGGUGGGGUA-- d.16.b.A.vinosum.fasta UUGCCAGAUGAGCCCAUGUCCGAUU------AGCUAGUUGGCGGGGUA-- d.16.b.Beggiatoa.sp.fasta CUAUAAGAUGAGCCUAUGUCUGAUU------AGCUAGUUGGUGGGGUA-- d.16.b.A.hydrophila.fasta CGAUUGGAUGAACCCAGGUGGGAUU------AGCUAGUUGGUGGGGUA-- d.16.b.S.putrefaciens.fasta CGAUUGGAUGAACCUAGGUGGGAUU------AGCUAGUUGGUGAGGUA-- d.16.b.C.freundii.fasta CCAUCNNAUGUGCCCAGAUGGGAUU------AGCUAGUAGGUGGGGUA-- d.16.b.S.dysenteriae.1.fasta CCAUCGGAUGUGCCCAGAUGGGAUU------AGCUAGUAGGUGGGGUA-- d.16.b.K.pneumoniae.fasta CCAUCAGAUGUGCCCAGAUGGGAUU------AGCUAGUAGGUGGGGUA-- d.16.b.P.shigelloides.fasta CUAUCGGAUGAACCCAGGUGGGAUU------AGCUAGUUGGUGAGGUA-- d.16.b.Y.pestis.fasta CCAUCGGAUGAACCCAGAUGGGAUU------AGCUAGUAGGUGGGGUA-- d.16.b.Y.pseudotuberculosis.fa CCAUCGGAUGAACCCAGAUGGGAUU------AGCUAGUAGGUGGGGUA-- d.16.b.S.dysenteriae.2.fasta CCAUCGGAUGUGCCCAGAUGGGAUU------AGCUAGUAGGUGGGGUA-- d.16.b.E.coli.0157G.GEN.fasta CCAUCGGAUGUGCCCAGAUGGGAUU------AGCUAGUAGGUGGGGUA-- d.16.b.E.coli.EDL.GEN.fasta CCAUCGGAUGUGCCCAGAUGGGAUU------AGCUAGUAGGUGGGGUA-- d.16.b.E.coli.fasta CCAUCGGAUGUGCCCAGAUGGGAUU------AGCUAGUAGGUGGGGUA-- d.16.b.E.coli.K12.GEN.fasta CCAUCGGAUGUGCCCAGAUGGGAUU------AGCUAGUAGGUGGGGUA-- h.16.b.E.coli.hlxnum.fasta CCAUCGGAUGUGCCCAGAUGGGAUU------AGCUAGUAGGUGGGGUA-- m.16.b.E.coli.mhg.fasta CCAUCGGAUGUGCCCAGAUGGGAUU------AGCUAGUAGGUGGGGUA-- s.16.b.E.coli.schem.fasta CCAUCGGAUGUGCCCAGAUGGGAUU------AGCUAGUAGGUGGGGUA-- d.16.b.S.typhimurium.fasta CCAUCAGAUGUGCCCAGAUGGGAUU------AGCUAGUUGGUGAGGUA-- d.16.b.S.marcescens.fasta CCAUCAGAUGUGCCCAGAUGGGAUU------AGCUAGUAGGUGGGGUA-- d.16.b.E.tarda.fasta CCAUCAGAUGAACCCAGAUGGGAUU------AGCUAGUAGGUGAGGUA-- d.16.b.P.vulgaris.fasta CUAUCGGAUGAACCCAUAUGGGAUU------AGCUAGUAGGUGAGGUA-- d.16.b.V.cholerae4.fasta CUACCGGAUAUGCCCAGGUGGGAUU------AGCUAGUUGGUGAGGUA-- d.16.b.V.cholerae5.fasta CUACCGGAUAUGCCCAGGUGGGAUU------AGCUAGUUGGUGAGGUA-- d.16.b.V.cholerae2.fasta CUACCGGAUAUGCCCAGGUGGGAUU------AGCUAGUUGGUGAGGUA-- d.16.b.V.cholerae6.fasta CUACCGGAUAUGCCCAGGUGGGAUU------AGCUAGUUGGUGAGGUA-- d.16.b.V.cholerae.fasta CUACCGGAUAUGCCCAGGUGGGAUU------AGCUAGUUGGUGAGGUA-- d.16.b.V.cholerae.GEN.fasta CUACCGGAUAUGCCCAGGUGGGAUU------AGCUAGUUGGUGAGGUA-- d.16.b.V.parahaemolyticus.fast CGUCAGGAUAUGCCCAGGUGGGAUU------AGCUNGUUGGUGAGGUA-- d.16.b.H.influenzae7.fasta CCAUAGGAUGAGCCCAAGUGGGAUU------AGGUAGUUGGUGGGGUA-- d.16.b.H.influenzae8.fasta CCAUAGGAUGAGCCCAAGUGGGAUU------AGGUAGUUGGUGGGGUA-- d.16.b.H.influenzae6.fasta CCAUAAGAUGAGCCCAAGUGGGAUU------AGGUAGUUGGUGAGGUA-- d.16.b.H.influenz.fasta CCAUAGGAUGAGCCCAAGUGGGAUU------AGGUAGUUGGUGGGGUA-- d.16.b.H.influenzae.fasta CCAUAGGAUGAGCCCAAGUGGGAUU------AGGUAGUUGGUGGGGUA-- d.16.b.P.multocida.fasta CCAUAAGAUGAGCCCAAGUGGGAUU------AGGUAGUUGGUGGGGUA-- d.16.b.P.multocida.GEN.fasta CCAUAAGAUGAGCCCAAGUGGGAUU------AGGUAGUUGGUGGGGUA-- d.16.b.X.albilineans.fasta CGGAUAGAUGAGCCGAUGUCGGAUU------AGCUAGUUGGUGGGGUA-- d.16.b.X.campestris.fasta CGAUUGAAUGAGCCGAUGUCGGAUU------AGCUAGUUGGCGGGGUA-- d.16.b.X.fastidiosa.GEN.fasta CGAUUGGAUGAGCCGAUGUCCGAUU------AGCUAGUUGGUGAGGUA-- d.16.b.D.nodosus.fasta CCGUAAGAUGAGCCUAUAUCGGAUU------AGCUAGUUGGUGGGGUA-- d.16.b.F.tularensis.fasta CAGAUGGAUGAGCCUGCGUUGGAUU------AGCUAGUUGGUGGGGUA-- d.16.b.B.parapertussis.fasta CUAUUGGAGCGGCCGAUAUCGGAUU------AGCUNGUUGGUGGGGUA-- d.16.b.B.pertussis.fasta CUAUUGGAGCGGCCGAUAUCGGAUU------AGCUNGUUGGUGGGGUA-- d.16.b.B.bronchiseptica2.fasta CUAUUGGAGCGGCCGAUAUCGGAUU------AGCUAGUUGGUGGGGUA-- d.16.b.u.proteobacterium.fasta CUAUUGGAGCGGCCGAUGGCAGAUU------AGCUAGUUGGUGGGGUA-- d.16.b.B.mallei.fasta CUAUAGGGUUGGCCGAUGGCUGAUU------AGCUAGUUGGUGGCGUA-- d.16.b.Burkholderia.sp.fasta CUACAGGGGCGGCCGAUGGCAGAUU------AGCUAGUUGGUGGGGUA-- d.16.b.N.meningitidis.MD58.GEN CUAUUCGAGCGGCCGAUAUCUGAUU------AGCUAGUUGGUGGGGUA-- d.16.b.N.meningitidis.Z2491.GE CUAUUCGAGCGGCCGAUAUCUGAUU------AGCUAGUUGGUGGGGUA-- d.16.b.N.gonorrhoeae.fasta CUAUCCGAGCGGCCGAUAUCUGAUU------AGCUGGUUGGCGGGGUA-- d.16.b.C.testosteroni.fasta CUACUAGAGCGGCUGAUGGCAGAUU------AGGUAGUUGGUGGGGUA-- d.16.b.D.desulfuricans.fasta CGUAAGGAUGAGUCCGCGUCCCAUU------AGCUUGUUGGCGGGGUA-- d.16.b.M.xanthus.fasta CAUUCAGAUGAGUCCGCGGCCCAUC------AGCUAGUUGGCGGGGUA-- d.16.b.D.thermophilus.fasta CUGCGGGAUGGGCUCGCGUCCCAUU------AGCUAGUUGGUGAGGUA-- d.16.b.B.burgdorferi.fasta CUUGUAGAUGAGUCUGCGUCUUAUU------AGCUAGUUGGUAGGGUA-- d.16.b.B.burgdorferi.GEN.fasta CUUGUAGAUGAGUCUGCGUCUUAUU------AGCUAGUUGGUAGGGUA-- d.16.b.B.hermsii.fasta CUUGUAGAUGAGUCUGCGUCUUAUU------AGCUAGUUGGUAGGGUA-- d.16.b.S.aurantia.fasta CCGACAGAGGAGCCUGCGGCUGAUU------AGCUAGUUGGUGGGGUA-- d.16.b.T.pallidum.A.fasta CUCAGAGAUGAGCCUGCGACCCAUU------AGCUUGUUGGUGGGGUA-- d.16.b.L.illini.fasta UCUGUGGAGAAGCCUGCGUCCGAUU------AGGUAGUUGGUGAGGUA-- d.16.b.L.interrogans.fasta CUCGGAGAUGAGCCCGCGUCCGAUU------AGCUAGUUGGUGAGGUA-- d.16.b.C.trachomatis.GEN.fasta GUUAAGGGAGAGUCUAUGUGAUAUC------AGCUAGUUGGUGGGGUA-- d.16.b.C.trachomatis.L2.fasta GUUAAGGGAGAGUCUAUGUGAUAUC------AGCUAGUUGGUGGGGUA-- d.16.b.C.muridarum.fasta GUUAAGGGAGAGUCUAUGUGAUAUC------AGCUAGUUGGUGGGGUA-- d.16.b.C.pneumoniae.AR39.fasta GUUGAGGAAGAGUUUAUGCGAUAUC------AGCUUGUUGGUGGGGUA-- d.16.b.C.pneumoniae.fasta GUUGAGGAAGAGUUUAUGCGAUAUC------AGCUUGUUGGUGGGGUA-- d.16.b.C.pneumoniae.J138.fasta GUUGAGGAAGAGUUUAUGCGAUAUC------AGCUUGUUGGUGGGGUA-- d.16.b.C.pneumoniae.CWL029.fas GUUGAGGAAGAGUUUAUGCGAUAUC------AGCUUGUUGGUGGGGUA-- d.16.b.C.psittaci.fasta GUUGAGGGAGAGUCUAUGGGAUAUC------AGCUUGUUGGUGGGGUA-- d.16.b.D.radiodurans.1.fasta CUUCUGGAUGGGGUUGCGUUCCAUC------AGCUGGUUGGUGGGGUA-- d.16.b.D.radiodurans.GEN.fasta CUUCUGGAUGGGGUUGCGUUCCAUC------AGCUGGUUGGUGGGGUA-- d.16.b.B.fragilis.fasta -UAAAGGAUGGGGAUGCGUUCCAUU------AGGUNGUUGGUGAGGUA-- d.16.b.P.gingivalis.fasta CUGUAAGAUAGGCAUGCGUCCCAUU------AGCUAGUUGGUGAGGUA-- d.16.b.C.vibrioforme.fasta CCUGUAGAUAAGCCUAUAUUCCAUC------AGGUAGUUGGCGGGGUA-- d.16.b.C.jejuni.fasta GUGUAGGAUGAGACUAUAUAGUAUC------AGCUAGUUGGUAAGGUA-- d.16.b.C.jejuni.GEN.fasta GUGUAGGAUGAGACUAUAUAGUAUC------AGCUAGUUGGUAAGGUA-- d.16.b.C.sputorum.fasta CUAUGGGAUGAGGCUAUAUUGUAUC------AGCUAGUUGGUAAGGUA-- d.16.b.H.pylori.26695.GEN.fast CUAAGAGAUCAGCCUAUGUCCUAUC------AGCUUGUUGGUAAGGUA-- d.16.b.H.pylori.J99.GEN.fasta CUAAGAGAUCAGCCUAUGUCCUAUC------AGCUUGUUGGUAAGGUA-- d.16.b.H.pylori2.fasta CUAAGAGAUCAGCCUAUGUCCUAUC------AGCUUGUUGGUAAGGUA-- d.16.b.A.capsulatum.fasta UGAGGAGGGGGUC--GCGGCCGAUU------AGCUAGUUGGCGGGGUA-- d.16.b.H.foetida.fasta CAAGAAGAGGGUCCUGCGUCUGAUU------AGCUAGUUGGCGGGGUA-- d.16.b.A.globiformis.fasta GUUUUGGAUGGACUCGCGGCCUAUC------AGCUUGUUGGUGAGGUA-- d.16.b.M.luteus.fasta GUUUUGGAUGGACUCGCGGCCUAUC------AGCUUGUUGGUGAGGUA-- d.16.b.Frankia.sp.fasta GCUCGGGAUGGGCCCGCGGCCUAUC------AGCUUGUUGGUGGGGUG-- d.16.b.S.bottropensis.fasta GUGAAGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGAGGUA-- d.16.b.S.scabiei.fasta GUGAAGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGAGGUA-- d.16.b.S.neyagawaensis.fasta GUGAAGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGAGGUA-- d.16.b.S.diastatochromogenes.f GUGAAGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGAGGUA-- d.16.b.Streptomyces.sp.fasta GUGCAGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGAGGUA-- d.16.b.S.acidiscabies.fasta GUGAAGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGAGGUA-- d.16.b.S.griseus.fasta GUGAAGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGGGGUA-- d.16.b.S.ornatus.fasta GUGAAGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGGGGUA-- d.16.b.S.subrutilus.fasta GUGAAGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGGGGUA-- d.16.b.S.bikiniensis.fasta GUGAAGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGGGGUA-- d.16.b.S.galbus.fasta GUGAAGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGAGGUA-- d.16.b.S.hygroscopicus.fasta GUGAAGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGAGGUA-- d.16.b.S.lincolnensis.fasta GUGAAGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGAGGUA-- d.16.b.S.coelicolor.fasta GUGAAGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGAGGUA-- d.16.b.S.tendae.fasta GUGCAGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGAGGUA-- d.16.b.S.ambofaciens.fasta GUGCAGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGAGGUA-- d.16.b.S.eurythermus.fasta GUGAAGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGAGGUA-- d.16.b.S.nodosus.fasta GUGCAGGAUGAGCCCGCGCCCUAUC------AGCUUGUUGGUGAGGUA-- d.16.b.S.sampsonii.fasta GUGCAGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGAGGUA-- d.16.b.S.glaucescens.fasta GUGCAGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGAGGUA-- d.16.b.S.pseudogriseolus.fasta GUGCAGGAUGAGCCCGCGGCCUAUC------AGCUAGUUGGUGAGGUA-- d.16.b.S.caelestis.fasta GUGCAGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGAGGUA-- d.16.b.S.bluensis.fasta GUGCAGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGAGGUA-- d.16.b.S.espinosus.fasta GUGCAGGAUGGGCCCGCGGCCUAUC------AGCUGGUUGGUGAGGUA-- d.16.b.S.mashuensis.fasta GUGCAGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGAGGUA-- d.16.b.S.rimosus.fasta GUGCAGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUUAGGUA-- d.16.b.S.limosus.fasta GUGCAGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGAGGUA-- d.16.b.S.odorifer.fasta GUGCAGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGAGGUA-- d.16.b.S.felleus.fasta GUGCAGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGAGGUA-- d.16.b.S.albidoflavus.fasta GUGCAGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGAGGUA-- d.16.b.S.gougerotii.fasta GUGCAGGAUGAGCCCGCGGCCUAUC------AGCUAGUUGGUGAGGUA-- d.16.b.S.rutgersensis.fasta GUGCAGGAUGAGCCCGCGGCCUAUC------AGCUAGUUGGUGAGGUA-- d.16.b.S.intermedius.fasta GUGCAGGAUGAGCCCGCGGCCUAUC------AGCUAGUUGGUGAGGUA-- d.16.b.S.thermodiastaticus.fas GUGCAGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGAGGUA-- d.16.b.S.thermoviolaceus.fasta GUGCAGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGAGGUA-- d.16.b.S.thermovulgaris.1.fast GUGCGGGAUGGGCCCGCGGCCUAUC------AGCUUGUUGGUGAGGUA-- d.16.b.S.thermovulgaris.2.fast GUGCGGGAUGGGCCCGCGGCCUAUC------AGCUUGUUGGUGAGGUA-- d.16.b.S.macrosporus.fasta GUGCAGGAUGAGCCCGCGGCCUAUC------AGCUGGUUGGUGGGGUG-- d.16.b.S.megasporus.fasta GUGCAGGAUGAGCCCGCGGCCUAUC------AGCUGGUUGGUGGNGUG-- d.16.b.S.thermolineatus.fasta GUGCAGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGGGGUG-- d.16.b.M.tuberculosis.2.fasta GUGUGGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGGGGUG-- d.16.b.M.tuberculosis.3.fasta GUGUGGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGGGGUG-- d.16.b.M.avium.fasta GUGUGGGAUGGGCCCGCGGCCUAUC------AGCUUGUUGGUGGGGUG-- d.16.b.M.leprae.fasta GUGCAGGAUGGGCCCGCGGCCUAUC------AGCUUGUUGGUGGGGUG-- d.16.b.M.leprae.GEN.fasta GUGCAGGAUGGGCCCGCGGCCUAUC------AGCUUGUUGGUGGGGUG-- d.16.b.M.tuberculosis.CDC1551. GUGUGGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGGGGUG-- d.16.b.M.tuberculosis.GEN.fast GUGUGGGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGGGGUG-- d.16.b.N.asteroides.fasta GUACGAGAUGGGCCCGCGGCCUAUC------AGCUUGUUGGUGGGGUA-- d.16.b.R.erythropolis.fasta GUGCAGGAUGGGCCCGCGGCCUAUC------AGCUUGUUGGUGGGGUA-- d.16.b.C.diphtheriae.fasta GUACGAGAUGAGCCCGCGGCCUAUC------AGCUUGUUGGUGGGGUA-- d.16.b.A.israelii.fasta GUGGGGGAUGGGCUCGCGGCCUAUC------AGCUUGUUGGUGGGGUG-- d.16.b.B.hyodysenteriae.fasta CUUUACGAUGAGCCUGCGGCCUAUU------AGCCUGUUGGUGGGGUA-- d.16.b.G.subterranea.fasta -----AGAGGGGUCUACGACCCAUC------AGGUAGUUGGUAGGGUA-- d.16.b.P.miotherma.fasta -----GGAUNGACCUNCUAUCCAUC------AGGUAGUUGGUGAGGUA-- d.16.b.B.andersonii.fasta CCUGUGGAUGAGCCUGCGUCCCAUC------AGCUAGUUGGUUAGGUA-- d.16.b.H.aurantiacus.fasta CACUGGNNGGGGGUCGCGUCCCAUU------AGAUAGUUGGUGUGGUA-- d.16.b.Leptospirillium.sp.fast CUCCUGGAUGAGCCCAUGGCCCAUC------AGCUAGUUGGUAGGGUA-- d.16.b.A.aeolicus.fasta CCUGGGGAUGGGCCCGCGGCCCAUC------AGGUAGUUGGUGGGGUA-- d.16.b.A.pyrophilus.fasta CCUGGGGAUGGGCCCGCGGCCCAUC------AGGUAGUUGGUGGGGUA-- d.16.b.T.maritima.fasta CCGGAGGAGGGGCCCGCGGCCCAUC------AGGUAGUUGGUGGGGUA-- d.16.b.T.maritima.GEN.fasta CCGGAGGAGGGGCCCGCGGCCCAUC------AGGUAGUUGGUGGGGUA-- n.16.b.T.thermophilus.2.num.fa CUUCCGGAUGGGCCCGCGUCCCAUC------AGCUAGUUGGUGGGGUA-- s.16.b.T.thermophilus.2.schem. CUUCCGGAUGGGCCCGCGUCCCAUC------AGCUAGUUGGUGGGGUA-- d.16.b.T.thermophilus.2.fasta CUUCCGGAUGGGCCCGCGUCCCAUC------AGCUAGUUGGUGGGGUA-- s.16.b.T.thermophilus.1.schem. CUUCCGGAUGGGCCCGCGUCCCAUC------AGCUAGUUGGUGGGGUA-- n.16.b.T.thermophilus.1.num.fa CUUCCGGAUGGGCCCGCGUCCCAUC------AGCUAGUUGGUGGGGUA-- d.16.b.T.thermophilus.1.fasta CUUCCGGAUGGGCCCGCGUCCCAUC------AGCUAGUUGGUGGGGUA-- d.16.b.T.aquaticus.fasta CUUCCGGAUGGGCCCGCGUCCCAUC------AGCUAGUUGGUGGGGUA-- d.16.b.T.roseum.fasta UGCUCGGAGGGCCCUGCGGCCUAUC------AGCUAGACGGUAGGGUA-- d.16.b.P.marina.fasta CCCGGGGAUGAGACUGCUCACUAUU------AGCUUGUUGGUGGGGUA-- d.16.b.P.staleyi.fasta CCUGAAGAGGGGCCUACGUCGUAUU------AGCUAGUUGGUAGGGUA-- d.16.b.P.Schlesner.fasta CCUGGAGAGGGGCCUGAGUCCUAUC------AGCUAGUUGGUGAGGUA-- d.16.b.G.obscuriglobus.1.fasta CCCCCGGAGGGGCCCAUGUGAUAUU------AGCUAGUUGGUGGGGUA-- d.16.b.I.pallida.fasta CCUCGGGACGGGCCGUNGUGGUAUU------AGGUAGUUGGUGGGGUC-- d.16.a.P.abyssi.fasta CCCGAGGAUGGGCCGGCGGCCGAUUA------GGUAGUUGGUGGGGUA-- d.16.a.P.horikoshii.fasta CCCGAGGAUGGGCCGGCGGCCGAUUA------GGUAGUUGGUGGGGUA-- d.16.a.P.furiosus.fasta CCCGAGGAUGCGGCGGCGGCCGAUUA------GGUAGUUGGUGGGGUA-- d.16.a.T.celer.fasta CCCGAGGAUGGGCCGGCGGCCGAUUA------GGUAGUUGGUGGGGUA-- d.16.a.A.fulgidus.fasta CCCGAGGAUGGGUCUGCGGCGGAUUA------GGUUGUUGGUGGGGUA-- d.16.a.N.equitans.fasta CCCGAGGAUGGGCCGGCGGCCCAUCA------GGUAGUUGGCGGGGUA-- d.16.a.A.pernix.K1.fasta CCCGAGGAUGGGGCUGCGGCCCAUCAC-----GGUAGUUGGCGGGGUA-- d.16.a.P.occultum.fasta CCCGAGGAUGGGGCUGCGGCCCAUCA------GGUAGUUGGCGGGGUA-- d.16.a.T.tenax.fasta CCCGAGGGUGGGGGUACGGCCCAUCA------GGUUGUUGGCGGGGUA-- d.16.a.S.acidocaldarius.fasta CCCGAGGAUGGGGCUACGGCCCAUCA------GGCUGUCGGUGGGGUA-- d.16.a.S.solfataricus.fasta CCCGAGGAUGGGGCUACGGCCCAUCA------GGCUGUCGGUGGGGUA-- d.16.a.S.solfataricus.2.fasta CCUCAGGAUGGGGCUGCGGCCCAUCA------GGUAGUUGGGGGGGUA-- d.16.a.M.thermautotrophicus.1. CCCAAGGAUGGGUCUGCGGCCGAUUA------GGUUGUUGGUAGGGUA-- d.16.a.M.thermautotrophicus.2. CCCAAGGAUGGGUCUGCGGCCGAUUA------GGUUGUUGGUAGGGUA-- d.16.a.M.formicicum.fasta CCUAAGGAUGGAUCUGCGGCAGAUUA------GGUAGUUGGCGGGGUA-- d.16.a.M.vannielii.fasta CCCGAGGAUAGGACUGCGCUCGAUUA------GGUAGUUGGUGGGGUA-- d.16.a.H.marismortui.rrnA.fast CUGUAGGAUGUGGCUGCGGCCGAUUA------GGUAGAUGGUGGGGUA-- d.16.a.H.marismortui.rrnB.fast CUGUAGGAUGUGGCUGCGGCCGAUUA------GGUAGAUGGUGGGGUA-- d.16.a.Halobacterium.sp.fasta CCACAGGAUGCGGCUGCGGUCGAUUA------GGUAGACGGUGGGGUA-- d.16.a.N.bangense.fasta CCAUAGGAUGUGGCUGCGGCCGAUUA------GGUAGACGGUGGGGUA-- d.16.a.N.innermongoliae.fasta CCAUAGGAUGUGGCUGCGGCCGAUUA------GGUAGACGGUGGGGUA-- d.16.a.H.volcanii.fasta CUGUAGGAUGUGGCUGCGGCCGAUUA------GGUAGACGGUGGGGUA-- d.16.a.M.hungatei.fasta CUUCAGGAUGAGUCUGCGGCCGAUUA------GGUAGUUGUUGGGGUA-- d.16.a.P.torridus.fasta CCCGGGGAUGAGUCUGCGGCCUAUCA------GGUAGUAGGUGGUGUA-- d.16.a.T.acidophilum.fasta CCUGAGGAUAAGUCUGCGGCCUAUCA------GGUAGUAGGUGGUGUA-- a.16.e.G.ardeae.fasta UCCGGCGUCGGGCCGCC-CUGCCG-------------------------- d.16.e.G.intestinalis.fasta CCCGUAGUUGGCCCCCCGCCGCCA-------------------------- a.16.e.G.muris.fasta UCCGGAGUCGAGACGUC-CAGCCG-------------------------- d.16.e.A.bracteata.fasta UCCGUAGUCGACGUGUC--UGGCG-------------------------- d.16.e.Glomus.sp.W3349.fasta CUCGUAGUUGAAUUUCGGGAUUUGCACAU----------CGGUCGUGCCU d.16.e.S.cerradensis.fasta CUCGUAGUUGAAUUUCGGGGUUCUACCGU----------UGGUCGGGCUA a.16.e.G.intraradices.fasta CUCGUAGUUGAAUUUCGGGGUUAGUAGGU----------UGGUCAUGCCU d.16.e.S.culisetae.fasta CUCGUAGUUGAACUUUAGGUUUCGGGAGUGUUGGAAAAAUGUAUAUGCUA a.16.e.P.balamuthi.fasta CUCGUAGUUGAAUUCCAACACCCGGUUUCAAGUUGAAUGGAAAGAAGGGU d.16.e.A.flavus.fasta CUCGUAGUUGAA--------CCUUGGGUCUGGCUGGCCGG---------- d.16.e.T.caries.fasta CUCGUAGUUGAA--------CUUCAGACCUGGCCGGUCGG---------- d.16.e.M.circinelloides.fasta UCCGUAGUCAAAUUUUAGCCUU-UAGAUG-----------------AGGU d.16.e.M.racemosus.fasta UCCGUAGUCAAAUUUUAGCCUU-UAGAUG-----------------AGGU d.16.e.R.oryzae.fasta UCCGUAGUCAAACUUUAGUCUUACCGGCG-----------------UAGU a.16.e.M.edulis.fasta CUCGUAGUUGGAUCUCGGGUCCAG---------------GCUGGCGGUCC a.16.e.P.magellanicus.fasta CUCGUAGUUGGAUCUCAGGUCCAG---------------GCUUGCGGUCC b.16.e.E.granulosus.fasta CUCGUAGUUGGAUCUCGGUGGCAUUGUCGCCUG---UUGGUGGAUUGAGC d.16.e.D.melanogaster.fasta UUCGUAGUUGAACUUGUGCUUCAU---------------ACGGGUAGUAC b.16.e.C.koreana.fasta CUCGUAGUUGGAUCUCGGUUUCAG---------------GUGAAUGGUGC b.16.e.A.australis.fasta CUCGUAGUCGGAUCUCAGAUCCGGAG-------------CUGCGGUCCAC b.16.e.O.utahensis.fasta CUCGUAGUUGGAUCUGUGUGCCACGCU------------GUCGGUUCACC b.16.e.A.salina.fasta CUCGUAGUUGGAUAUGGGUCUCGGU---------------CGGGUGGUGC d.16.e.M.musculus.fasta CUCGUAGUUGGAUCUUGGGAGCGG---------------GCGGGCGGUCC d.16.e.R.norvegicus.fasta CUCGUAGUUGGAUCUUGGGAGCGG---------------GCGGGCGGUCC d.16.e.H.sapiens.fasta CUCGUAGUUGGAUCUUGGGAGCGG---------------GCGGGCGGUCC d.16.e.O.cuniculus.fasta CUCGUAGUUGGAUCUUGUGGAGGGUGCG---------UAGCGGGCGGUCC d.16.e.X.borealis.fasta CUCGUAGUUGGAUCUUGGGAUCGA---------------GCUGGCGGUCC d.16.e.X.laevis.fasta CUCGUAGUUGGAUCUUGGGAUCGA---------------GCUGGCGGUCC d.16.e.A.castellanii.fasta CUCGUAGUUGGAUCUAGGGACGCG---CAU-------------UUCAAGC d.16.e.B.mandrillaris.fasta CUCGUAGUUGGAUCUCGGAGUGU--------------------------- d.16.e.P.falciparum.A.fasta CUCGUAGUUGAAUUUCAAAGAAUC-GAUAU-------------UUUAUU- d.16.e.P.falciparum.S.fasta UUCGUAGUUGAAUAUUAAAGAAUCCGAUGU-------------UUCAUU- d.16.e.P.vivax.A.fasta CUCGUAGUUGAAUUUCAAAGAAUC-GAUAU-------------UUUAAG- d.16.e.P.vivax.O.fasta UUCGUAGUUAAAUUUGAAAGAAUC-AACAU-------------UUUAAG- d.16.e.P.vivax.S.fasta CUCGUAGUUGAAUUUCAAAGAACC-AAUAU-------------UUUAA-- d.16.e.E.histolytica.fasta CUCGUAGUUGAAUU--AAAAUGUG----GU-------------UUUAU-- d.16.e.I.hoferi.fasta CUCGUAGUUGGAUUUUGGAAAUUG-------------------CUUACU- d.16.e.Dermocystidium.sp.fasta CUCGUAGUUGGAUUUUGGGAUUUG-------------------GUCGA-- d.16.e.S.destruens.fasta CUCGUAGUUGGAUUUUGGGAUAAG-------------------CUUG--- d.16.e.A.unguiculata.fasta CUCGUAGUUGGAUUUCUGGUGAAG-------------------------- d.16.e.D.grandis.fasta CUCGUAGUUGGAUUUCUGUUACUG-------------------------- d.16.e.A.macrogynus.fasta CUCGUAGUUGAAUUUCAAGGGUUU-----U-------------UUUCGU- d.16.e.B.emersonii.fasta CUCGUAGUUGAAUUUCAGGGCUGU-----C-------------UUUGUC- d.16.e.C.albicans.fasta CUCGUAGUUGAACCUUGGGCUUGGCUGGCC-----------GGUCCAUCU d.16.e.S.cerevisiae.fasta CUCGUAGUUGAACUUUGGGCCCGGUUGGCC-----------GGUCCGAUU d.16.e.N.crassa.fasta CUCGUAGUUGAACCUUGGGCUCGGCCGUC------------GGUCCGCCU d.16.e.P.anserina.fasta CUCGUAGUUGAACCUUGGGCCCGGCCCUCC-----------GGUCCCCCU d.16.e.C.immitis.fasta CUCGUAGUUGAACCUUGGGUCUGGCUGGCC-----------GGUCCGCUU d.16.e.L.major.fasta UUCGUAGUUGAACUGUGGGCUGUGCAGGUUUGU-UCCUGGUCGUCCCGUC d.16.e.T.cruzi.fasta UUCGUAGUUGAAUUGAGGGCCUCUAAGGCGCAA-UGGUU-UAGUCCCAUC d.16.e.T.brucei.fasta UUCGUAGUUGAACUGUGGGCCACGUAGUUUUGUGCCGUGCCAGUCCCGUC d.16.e.P.carinii.fasta CUCGUAGUUGAAUUUAGGGAUUGGUUGCCU-----------GGUCCUCCG d.16.e.C.neoformans.fasta CUCGUAGUCGAACUUCAGGUCUGG-------------------------- d.16.e.Fungus.sp.QPX.fasta CUCGUAGUCGAACUUCGGGCCUGG-------------------------- d.16.e.U.maydis.fasta CUCGUAGUUGAAGUUUGGUCUCGG-------------------------- d.16.e.M.leidyi.fasta CUCGUAGUUGGAUUUCGGAACCGG-------------------------- d.16.e.T.cystophora.fasta CUCGUAGUUGGAUUUCGGGUUGGA-------------------------- d.16.e.M.prolifera.fasta CUCGUAGUUGGAUUUCGGGGCGGC-------------------------- d.16.e.P.haeckeli.fasta CUCGUAGUUGGAUUUUGGAUCGGC-------------------------- d.16.e.E.rotunda.fasta CUCGUAGUUGGAUUUCUGAUGAAC-------------------------- d.16.e.P.chromatophora.fasta CUCGUAGUUGGAUUUCUGGUUGAC-------------------------- d.16.e.A.majus.fasta CUCGUAGUUGGACUUUGGGUUGGG-------------------------- d.16.e.S.indicum.fasta CUCGUAGUUGGACCUUGGGUUGGG-------------------------- d.16.e.D.grandiflora.fasta CUCGUAGUUGGACUUUGGGUUGGG-------------------------- d.16.e.Pla.lanceolata.fasta CUCGUAGUUGAACUUUGGGUUGGG-------------------------- d.16.e.N.tabacum.fasta CUCGUAGUUGGACUUUGGGAUGGG-------------------------- d.16.e.A.thaliana.fasta CUCGUAGUUGAACCUUGGGAUGGG-------------------------- d.16.e.S.alba.fasta CUCGUAGUUGAACCUUGGGAUGGG-------------------------- d.16.e.S.tuberosum.fasta CUCGUAGUUGGACUUUGGGAUGGC-------------------------- d.16.e.F.x.ananassa.fasta CUCGUAGUUGGACCUUGGGUUGGG-------------------------- d.16.e.G.max.fasta CUCGUAGUUGGACCUUGGGUUGGG-------------------------- d.16.e.O.sativa.fasta CUCGUAGUUGGACCUUGGGCGCGG-------------------------- d.16.e.Z.mays.fasta CUCGUAGUUGGACCUUGGGCCGGG-------------------------- d.16.e.A.verticilliflorum.fast CUCGUAGUUGGAUUUUGGGUUGGG-------------------------- d.16.e.G.spirotaenia.fasta CUCGUAGUUGGAUUUUGGGUUGGG-------------------------- d.16.e.Staurastrum.sp.M752.fas CUCGUAGUUGGAUUUUGGGUUGGA-------------------------- d.16.e.C.paradoxa.fasta CUCGUAGUCGGAUUUCGGGGCGGG-------------------------- d.16.e.G.nostochinearum.fasta CUCGUAGUUGGAUUUCGGGGCGGG-------------------------- d.16.e.G.wittrockiana.fasta CUCGUAGUUGGAUUUCGGGGCGGG-------------------------- d.16.e.C.luteoviridis.fasta CUCGUAGUCGGAUUUCGGACGGGG-------------------------- d.16.e.O.longa.fasta CUCGUAGUUGGAUUUCUGAAGGGG-------------------------- d.16.e.P.weissei.fasta CUCGUAGUUGGAUUUCUGAGAGGG-------------------------- d.16.e.C.citrina.fasta CUCGUAGUUGGAUUUCUGGGAGGG-------------------------- d.16.e.G.steinii.fasta CUCGUAGUUGGAUUUCUGGGAGGG-------------------------- d.16.e.Ple.lanceolata.fasta CUCGUAGUUGGAUUUCUGGGAGAG-------------------------- d.16.e.O.quadricornutus.fasta CUCGUAGUUGGAUUUCUGGGAGAG-------------------------- d.16.e.S.lemnae.fasta CUCGUAGUUGGAUUUCUGGAGGGG-------------------------- d.16.e.S.mytilus.fasta CUCGUAGUUGGAUUUCUGGAGGGG-------------------------- d.16.e.E.mobilis.fasta CUCGUAGUUGGAUUUCUGAGAGGG-------------------------- d.16.e.O.granulifera.1.fasta CUCGUAGUUGGAUUUCUGGGAGGG-------------------------- d.16.e.O.granulifera.2.fasta CUCGUAGUUGGAUUUCUGGGAGGG-------------------------- d.16.e.U.gallina.fasta CUCGUAGUUGGAUUUCUGGGAGGG-------------------------- d.16.e.U.pisces.fasta CUCGUAGUUGGAUUUCUGGGAGGG-------------------------- d.16.e.P.lepisma.fasta CUCGUAGUUGGAUUUCUGGGAGGG-------------------------- d.16.e.U.grandis.fasta CUCGUAGUUGGAUUUCUGAGGGGG-------------------------- d.16.e.B.coli.fasta CUCGUAGUUGGAUUUCAAGG------------------------------ d.16.e.E.aediculatus.fasta CUCGUAGUUGGAUUUCUGAGGUUG-------------------------- d.16.e.T.thermophila.fasta CUCGUAGUUGAACUUCUGUUCAGG-------------------------- d.16.e.Bangia.sp.NWT.fasta CUCGUAGUCGGACCUCGGA-GCGC-------------------------- d.16.e.Bangia.sp.VIS7.fasta CUCGUAGUCGGACUUGGGA-GAGC-------------------------- d.16.e.E.carnea.fasta CUCGUAGUCGGACUUCGGGCG-UG-------------------------- d.16.e.R.parvula.fasta CUCGUAGUCGGACUUCGGGCG-UG-------------------------- d.16.e.C.coeruleus.fasta CUCGUAGUCGGACCUCGGGCG-UG-------------------------- d.16.e.P.aerugineum.1.fasta CUCGUAGUCGGAGAUGGGGCGGUG-------------------------- d.16.e.R.maculata.fasta CUCGUAGUCGGAUUUCGGGUGCUG-------------------------- d.16.e.A.ambigua.fasta CUCGUAGUUGAAUUUCUGGUGGAG-------------------------- d.16.e.A.baicalensis.fasta CUCGUAGUUGAAUUUCUGGUGGAG-------------------------- d.16.e.S.nipponica.fasta CUCGUAGUUGAAUUUCUGGCGGGA-------------------------- d.16.e.C.radiatus.fasta CUCGUAGUUGGAUUUCUGGUGGGA-------------------------- d.16.e.C.criophilum.fasta CUCGUAGUUGGAUUUCUGGUUGGG-------------------------- d.16.e.A.capitellata.fasta CUCGUAGUUGGAUUUGUGGCGGUU-------------------------- d.16.e.S.pupula.fasta CUCGUAGUUGGAUUUGUGGAUGCA-------------------------- d.16.e.T.antarctica.fasta CUCGUAGUUGGAUUUGUGGUGUGU-------------------------- d.16.e.E.triangulatum.fasta CUCGUAGUUGGAUUUGUGGUUGAU-------------------------- d.16.e.A.bongranii.fasta CUCGUAGUUGAAUUUGUGGCUGUU-------------------------- d.16.e.Pseudogomphonema.sp.fas CUCGUAGUUGGAUUUGUGGCGUGU-------------------------- d.16.e.D.tenue.fasta CUCGUAGUUGGAUUUGUGGUUGGA-------------------------- d.16.e.G.marina.fasta CUCGUAGUUGGAUUUGUGGUUGGA-------------------------- d.16.e.Thalassionema.sp.fasta CUCGUAGUUGAACUUGUGGUUUGU-------------------------- d.16.e.R.belgicae.fasta CUCGUAGUUUGAUUUGUGGACGGA-------------------------- d.16.e.Undatella.sp.fasta CUCGUAGUUGGAUUUGUGGCAGUC-------------------------- d.16.e.C.belgica.fasta CUCGUAGUUGGAUUUCUGGUGGGA-------------------------- d.16.e.O.sinensis.fasta CUCGUAGUUGGACUUCUGGUGGGA-------------------------- d.16.e.D.brightwellii.fasta CUCGUAGUUGGAUUUCUGGUGGGA-------------------------- d.16.e.L.undulatum.fasta CUCGUAGUUGGAUUUCUGGCUGGA-------------------------- d.16.e.T.eccentrica.fasta CUCGUAGUUGGAUUUCUGGCAGGA-------------------------- d.16.e.T.pseudonana.fasta CUCGUAGUUGGAUUUCUGGCGGGA-------------------------- d.16.e.S.costatum.fasta CUCGUAGUUGGAUUUCUGGCAGGA-------------------------- d.16.e.P.laevis.fasta CUCGUAGUUGAAUGUCUGGUGGGA-------------------------- d.16.e.L.borealis.fasta CUCGUAGUUGAAAUACUGAUUUAG-------------------------- d.16.e.P.pseudodenticulata.fas CUCGUAGUUGAAAUACUGACAUAG-------------------------- d.16.e.B.mediterranea.fasta CUCGUAGUUGGAUUUCUGGUGACA-------------------------- d.16.e.B.pacifica.fasta CUCGUAGUUGGAUUUCUGGUGAGU-------------------------- d.16.e.L.minuta.fasta CUCGUAGUUGGAUUUCUGGUAGGA-------------------------- d.16.e.L.danicus.fasta CUCGUAGUUGGAUUUCUGGUGCAU-------------------------- d.16.e.Chaetoceros.sp.fasta CUCGUAGUUGCAUUUCCGAGGCAA-------------------------- d.16.e.A.invadans.fasta CUCGUAGUUGGAUUUCUGGUUUGA-------------------------- d.16.e.L.giganteum.fasta CUCGUAGUUGGAUUUCUGGUUUGA-------------------------- d.16.e.M.varians.fasta CUCGUAGUUGAAUUUUAGGUUGUA-------------------------- d.16.e.B.hominis.fasta CUCGUAGUUGAAGUGUGGGUGAUC-------------------------- d.16.e.P.marinus.fasta CUCGUAGUUGGAUUUCUG-------------------------------- d.16.e.T.gondii.fasta CUCGUAGUUGGAUUUCUG-------------------------------- d.16.e.A.fundyense.fasta CUCGUAGUUGGAUUUCUG-------------------------------- d.16.e.B.bigemina.fasta CUCGUAGUUGUAUUUCAG-------------------------------- d.16.e.B.canis.fasta CUCGUAGUUGUAUUUUUG-------------------------------- d.16.e.Babesia.sp.OKD.fasta CUCGUAGUUGAAUUUCUG-------------------------------- d.16.e.B.microti.1.fasta CUCGUAGUUGAAUUUCUG-------------------------------- d.16.e.B.microti.2.fasta CUCGUAGUUGAAUUUCUG-------------------------------- d.16.e.B.microti.3.fasta CUCGUAGUUGAAUUUCUG-------------------------------- d.16.e.B.microti.4.fasta CUCGUAGUUGAAUUUCUG-------------------------------- d.16.e.B.microti.5.fasta CUCGUAGUUGAAUUUCUG-------------------------------- d.16.e.B.rodhaini.fasta CUCGUAGUUGAAUUUCUG-------------------------------- d.16.e.B.gibsoni.fasta CUCGUAGUUGAACUUCUG-------------------------------- d.16.e.B.bovis.fasta CUCGUAGUUGUACUUCAC-------------------------------- d.16.e.J.libera.fasta CUCGUAGUCAGACUUUCGAGGGUG-------------------------- d.16.e.R.americana.fasta CUCGUAGUCAGACUGCCGAGGGCA-------------------------- d.16.e.B.ostreae.fasta CUCGUAGUUGGAUAUCUGCCCCCG-------------------------- d.16.e.A.dasyae.fasta CUCGUAGUCGGAUUUUGGGG--CA-------------------------- d.16.e.A.hermannii.fasta CUCGUAGUCGGAUUUUGGCG--UG-------------------------- d.16.e.N.helminthoides.fasta CUCGUAGUCGGAUUUUGGCG--UG-------------------------- d.16.e.B.gelatinosum.fasta CUCGUAGUCGGAUUUUGGUG--CG-------------------------- d.16.e.N.tortuosa.fasta CUCGUAGUCGGAUUUUGGCG--CG-------------------------- d.16.e.T.hispida.fasta CUCGUAGUCGGAAAUUGGUG--UG-------------------------- d.16.e.T.violacea.4.fasta CUCGUAGUCGGAAAUUGGUG--UG-------------------------- d.16.e.T.violacea.1.fasta CUCGUAGUCGGAUUUUGGCG--CG-------------------------- d.16.e.T.violacea.2.fasta CUCGUAGUCGGAUUUUGGCC--CG-------------------------- d.16.e.N.shawii.fasta CUCGUAGUCGGAUUUUGGCG--CG-------------------------- d.16.e.B.investiens.fasta CUCGUAGUCGGAUUUUGGCG--GG-------------------------- d.16.e.B.macrosporum.fasta CUCGUAGUCGGAUGUUGGCA--CG-------------------------- d.16.e.A.plicata.fasta CUCGUAGUCGGAGGUUGGCG--GG-------------------------- d.16.e.C.officinalis.fasta CUCGUAGUCGGACUUUGGCA--AU-------------------------- d.16.e.R.carriebowensis.fasta CUCGUAGUCGGAAGUUGGUG--GU-------------------------- d.16.e.B.hamifera.fasta CUCGUAGUCGGAGGUUGGCGGGCG-------------------------- d.16.e.G.vagum.fasta CUCGUAGUCGGAACUUGGCGGGCG-------------------------- d.16.e.C.crispus.fasta CUCGUAGUCGGAGGUUGGCGGGCA-------------------------- d.16.e.H.plana.fasta CUCGUAGUCGAAAUUUGGCGGGCG-------------------------- d.16.e.R.leptophylla.fasta CUCGUAGUCGGAACUUGGCGGGCG-------------------------- d.16.e.P.pulvinata.fasta CUCGUAGUCGGAAUUUGGCGGGCG-------------------------- d.16.e.C.rubrum.fasta CUCGUAGUCGGACGUUGGCGGGCG-------------------------- d.16.e.Gracilariopsis.sp.fasta CUCGUAGUCGAAUUUUGGCGUGUG-------------------------- d.16.e.B.moritziana.fasta CUCGUAGUCGAACUUUGGCGAUGG-------------------------- d.16.e.H.rubra.fasta UUCGUAGUCGGACCUAUGAGC-UG-------------------------- d.16.e.D.grisea.fasta CUCGUAGUCGGAGAUGGGAC--UG-------------------------- d.16.e.N.fowleri.fasta CCCGUAGU-AAACCUAAGAGUGUU-------------------------- d.16.e.N.gruberi.fasta CCCGUAGU-AUACCUAAGAGUGGG-------------------------- a.16.e.Hexamita.sp.fasta CUCGUAGCCGUUGUUAGCCCCGCG-------------------------- d.16.e.T.foetus.fasta CUCGUAGUCAG----AACUGCCUG-------------------------- d.16.e.A.khaliulini.fasta UGCGUAGUC---UGGUU--------------------------------- d.16.e.E.aedis.fasta UGCGUAGUCGGCUAGUUGUGUGAAUAGUGAUUCGGGAUGGUACGCGGAGU d.16.e.A.connecticus.fasta UGCGUAGUC---UGGUU--------------------------------- d.16.e.I.barri.fasta UGCGUAGUC---UGGUC--------------------------------- d.16.e.A.ferocious.fasta UGCGUAGUC---UGGUU--------------------------------- d.16.e.Amblyospora.sp.fasta U-CGUAGUC---UGGUC--------------------------------- d.16.e.C.lunata.fasta UGCGUAGUC---UGAUUUG------------------------------- d.16.e.P.anophelis.fasta CGCGUAGUUUG-UGGU---------------------------------- d.16.e.Hazardia.sp.fasta UGCGUAGUCG---GGCA--------------------------------- d.16.e.H.milleri.fasta UGCGUAGUCG---GGCG--------------------------------- d.16.e.P.simulii.fasta UCCGUAGUCGUGUGAGAGUUUUACGAAUGU-------------------- d.16.e.W.palustris.fasta UCCGUAGUCGUGUGAGGCGCUUAUGAACAUU------------------- d.16.e.Nosema.sp.03.fasta UCUGUAGUUU-------AUUU----------------------------- d.16.e.Nosema.sp.05.fasta UCUGUAGUUU-------AUUUU---------------------------- d.16.e.Endoreticulatus.sp.fast UCUGUAGUUU-------AUUUU---------------------------- d.16.e.Nosema.sp.02.fasta UCUGUAGUUU-------AUUUU---------------------------- d.16.e.N.spodopterae.fasta UCUGUAGUUU-------AUUU----------------------------- d.16.e.N.trichoplusiae.fasta UCUGUAGUUU-------AUUUU---------------------------- d.16.e.N.bombycis.27.fasta UCUGUAGUUU-------AUUU----------------------------- d.16.e.N.bombycis.02.fasta UCUGUAGUUU-------AUUU----------------------------- d.16.e.V.imperfecta.fasta UCUGUAGUUU-------AUUU----------------------------- d.16.e.N.furnacalis.fasta UCUGUAGUUU-------AUUA----------------------------- d.16.e.Microsporidium57864.fas UCCGUAGUUU-------AUAU----------------------------- d.16.e.Vairimorpha.sp.C21.fast UCCGUAGUUU-------AUGA----------------------------- d.16.e.N.oulemae.fasta UCCGUAGUUU-------AUAU----------------------------- d.16.e.N.necatrix.fasta UCCGUAGUUU-------AUAU----------------------------- d.16.e.V.necatrix.fasta UCCGUAGUUU-------AUAU----------------------------- d.16.e.N.apis.fasta UCCGUAGUUU-------AUUG----------------------------- d.16.e.O.occidentalis.fasta UCCGUAGUUU-------AUGG----------------------------- d.16.e.Microsporidium.sp.DP119 UCCGUAGUUU-------UUUUAUUG------------------------- d.16.e.V.corneae.fasta UCCGUAGUC--------AUAGAAGG------------------------- d.16.e.A.michaelis.fasta UCCGUAGUCGCG-----GCUGGGAC------------------------- d.16.e.T.contejeani.fasta UUCGURGUUG-------AUUAU---------------------------- d.16.e.E.hellem.fasta UCCGUAGUUGUUUGU--AUGUCUUU------------------------- d.16.e.Encephalitozoon.sp.fast UCCGUAGUCUUUUGU--AUGUCUUU------------------------- d.16.e.E.cuniculi.fasta UCCGUAGUCUGUUGUGUAUGUCUUU------------------------- d.16.e.O.colligata.fasta UCUGUAGUCAAGUGAGGAUGUGUAU------------------------- d.16.e.E.salmonis.fasta UCCGUAGUCGUAGAUGCAAUUAAAG------------------------- d.16.e.N.salmonis.fasta UCCGUAGUCGUAGAUGCAAUUAAAG------------------------- d.16.e.Enterocytozoonidae.sp.f UCCGUAGUCUAUGAUACAAUUAAAG------------------------- d.16.e.E.bieneusi.fasta UCCGUAGUCGUGAAUGCAAUUAAAU------------------------- d.16.e.B.algerae.fasta UUUGUAGCCUAUUUAUGGAUUGUUU------------------------- d.16.e.T.solenopsae.fasta UUUGUAGCCAGUUUAUGGAUUGUUU------------------------- d.16.e.V.acridophagus.fasta UUUGUAGCC-GUAUA-AGCUUGAAU------------------------- d.16.e.Bacillidium.sp.fasta UCCGUAGUUGAUCUAAUAGUAUAC-------------------------- d.16.e.P.cristatellae.fasta UCCGUAGUUGAUCACAAGGUAUUCUUCUGCAUAGUAUUUGUGGAGUGUAU d.16.e.Pleistophora.sp.fasta UCCGUAGUCGUGGAGACGGAAAGAG------------------------- d.16.e.O.operophterae.fasta UCCGUAGUCGGCACUGCGACGAAAGCGCG--------------------- d.16.e.F.magnivora.fasta UCCGUAGUCAGU-----GUUGACAGGG----------------------- d.16.e.G.atherinae.fasta UUCGUAGUCGAAGUGGUUAUAACGG------------------------- d.16.e.Ichthyosporidium.sp.fas UUCGUAGUCGAACCGGGUUGAAUUG------------------------- d.16.e.L.acerinae.fasta UUCGUAGUCUGAGCGGAACGAGGGG------------------------- d.16.e.H.anguillarum.fasta UUCGUAGUCGGGCUGCGU-GACUGG------------------------- d.16.e.P.mirandellae.fasta UUCGUAGUCGGGCUGCAU-GACUGG------------------------- d.16.e.T.hominis.fasta UUCGUAGUCGGGCUGCGU-GACUGG------------------------- d.16.e.V.culicis.fasta UUCGUAGUCGGGCUGCAU-GACCGG------------------------- d.16.e.P.hippoglossoideos.fast UUCGUAGUCGGACUGCGU-GACUGG------------------------- d.16.e.Microgemma.sp.fasta UCCGUAGUCGAAGAACAA-UACUUG------------------------- d.16.e.S.lophii.fasta UCCGUAGUCGAAGAACAG-UACUUG------------------------- d.16.e.Pleistophora.sp.LS.fast UUCGUAGUCUGGGGGCUA-UAUUUU------------------------- d.16.e.D.gammarellum.fasta UCCGUAGUCUAGCCGCAC-GACCAG------------------------- d.16.e.M.prosopium.fasta UUCGUAGUCGAGUAGCAU-GACAGG------------------------- d.16.e.A.scoticae.fasta UCCGUAGUCGGCCAUGAGGGGCAG-------------------------- d.16.e.P.whitei.fasta UCCGUAGUCGGCCCGGGCGCGCCG-------------------------- a.16.c.C.coccineum.fasta ----------------------------------AAUAGCUUACCAAGGC a.16.c.C.ruber.fasta ----------------------------------AAUAGCUUACCAAGGC d.16.c.N.tabacum.fasta ----------------------------------AAUAGCUUACCAAGGC d.16.c.S.oleracea.fasta ----------------------------------AAUAGCUUACCAAGGC d.16.c.Z.mays.fasta ----------------------------------AAUAGCUUACCAAGGC d.16.c.M.polymorpha.fasta ----------------------------------AAUAGCUUACCAAGGC d.16.c.R.communis.fasta ----------------------------------AAUAGCUUACCAAGGC d.16.c.C.vulgaris.fasta ----------------------------------AAUGGCUUACCAAGGC d.16.c.P.wickerhamii.fasta ----------------------------------AACUGCAUACCAAGGC d.16.c.P.minor.fasta ----------------------------------AAAUGCUUACCAAGGC d.16.c.N.olivacea.fasta ----------------------------------AAAAGCCUACCAAGGC d.16.c.P.parkeae.fasta ----------------------------------AAAGGCCUCCCAAGGC d.16.c.C.reinhardtii.fasta ----------------------------------AACGGCCUCCCAAGGC b.16.m.A.castellanii.fasta ----------------------------------AUUAUUC-AACAAGCC d.16.c.P.thurberi.fasta ----------------------------------AG-GCCU-ACCAAGAC b.16.m.C.crispus.fasta ----------------------------------AUAGAGU-ACCAAGCU d.16.c.T.gondii.fasta ----------------------------------AUAGUUUUACCAAGGC b.16.m.N.crassa.fasta UUAGGCACCUGUUGAAAGGGGCC-UACUUAUAUUAUAUCCGCUUUAAGAG b.16.m.P.anserina.fasta -------------------------------GUCAUGUUCGCUUUUAGAU b.16.m.P.chrysogenum.fasta --------------------------------AUAUUACCGCUUUAAGAU b.16.m.E.nidulans.fasta -------------------------------AGAAGGUCCGCUUUAAGAU b.16.m.S.cerevisiae.fasta ----------------------------------AGAGUUAAACCUAGCC b.16.m.W.saturnus.m.fasta ----------------------------------AUAGCCAUACAUAGCC b.16.m.P.minor.fasta ----------------------------------UUAGAUAU-UAUGGAU d.16.c.P.falciparum.fasta ----------------------------------AAAGAC-UACCAAGGU d.16.c.B.bovis.fasta ----------------------------------AAAAUAAUAUUAAGGU b.16.m.T.pyriformis.fasta ----------------------------------UUAGCAGCUUAAAGAU d.16.m.S.sinuspaulianus.fasta ----------------------------------AUAA-AAUAAAAAAGC b.16.m.P.tetraurelia.fasta -----------------------------GCUUCGAAUUCGAAGGGGGGC b.16.m.D.discoideum.fasta -----------------------------------AAGGCUUACCAAACC d.16.m.P.polycephalum.fasta GACUCCCUCGGGAGGCUGCAGUA-GGGAAUCGUGAACAAUGUGCUAACGC b.16.m.P.littoralis.fasta ---------------------------------AGUAAGCUUACCAAGCC b.16.m.P.wickerhamii.fasta -----------------------------------AAGGCUUACCAAGCC d.16.c.H.africana.fasta -----------------------------------ACAGCUUAACAAGAC d.16.c.C.fragile.fasta -----------------------------------AAAGCUUACCAAGGC d.16.c.C.sertularioides.fasta -----------------------------------AAAGCUUACCAAGAC d.16.c.C.humicola.fasta GGGCUUGCGGCUGAUUAGCUAGU-UGGUGGGGGUAAAAGCCUCCCAAGGC d.16.c.P.uvella.fasta GAGCUUGCGGCUGAUUAGCUAGU-UGGUGAGG-UAAAGGCUUACCAAGGC a.16.c.G.nostochinearum.fasta -----------------------------------ACGGCUUACCAAGGC a.16.c.G.wittrockiana.fasta -----------------------------------AUGGCUUACCAAGGC d.16.c.C.paradoxa.fasta -----------------------------------AAGGCCUACCAAGGC d.16.y.C.paradoxa.fasta -----------------------------------AAGGCCUACCAAGGC d.16.c.Cryptomonas.sp.fasta -----------------------------------AGGGCCUACCAAGGC d.16.c.P.palmata.fasta -----------------------------------AAAGCUUACCAAGGC d.16.c.H.akashiwo.fasta -----------------------------------AUGGCCUACCAAGGC d.16.c.S.pseudocostatum.fasta -----------------------------------AGAGCUUACCAAGGC d.16.c.P.littoralis.fasta -----------------------------------AAAGGCUAC-AAGGC d.16.c.C.caldarium.fasta -----------------------------------AUGGCUUACCAAGGC a.16.c.E.huxleyi.fasta -----------------------------------ACGGCUUACCAAGGC d.16.c.E.gracilis.fasta -----------------------------------AAGGCUUACCAAGGC d.16.b.Anabaena.sp.fasta -----------------------------------AGAGCGCACCAAGGC d.16.b.Chlorogloeopsis.PCC7518 -----------------------------------AAGGCCUACCAUGGC d.16.b.Synechococcus.sp.fasta -----------------------------------AGGGCCUACCAAGGC d.16.b.Synechocystis.PCC6803.G -----------------------------------AGAGCCUACCAUGGC d.16.b.O.agardhii.fasta -----------------------------------AGAGCCCACCAAGGC d.16.b.Pleurocapsa.7516.fasta -----------------------------------AUGGACUACCAAGGC d.16.b.M.aeruginosa.fasta -----------------------------------AGGGCCUACCAAGGC b.16.m.C.reinhardtii.fasta ----------------------------------AGCGGCCCAUG----- d.16.m.C.eugametos.fasta ----------------------------------AGCUUCCCAUG----- b.16.m.M.senile.fasta ----------------------------------ACCACCUUGCU----- d.16.b.S.pneumoniae.fasta ----------------------------------AACGGCUCACCAAGGC d.16.b.S.pyogenes.fasta ----------------------------------AAAGGCUCACNAAGGC d.16.b.B.anthracis.fasta ----------------------------------AACGGCUCACCAAGGC d.16.b.B.cereus.1.fasta ----------------------------------AACGGCUCACCAAGGC d.16.b.E.faecalis.fasta ----------------------------------AACGGCUCACCAAGGC d.16.b.E.faecium2.fasta ----------------------------------AACGGCUCACCAAGGC d.16.b.L.monocytogenes.fasta ----------------------------------AAUGGCCUACCAAGGC d.16.b.B.subtilis.fasta ----------------------------------AACGGCUCACCAAGGC d.16.b.B.subtilis.GEN.fasta ----------------------------------AACGGCUCACCAAGGC d.16.b.B.halodurans.fasta ----------------------------------AACGGCUCACCAAGGC d.16.b.S.aureus.fasta ----------------------------------AACGGCUUACCAAGGC d.16.b.S.aureus.GEN.fasta ----------------------------------AACGGCUUACCAAGGC d.16.b.L.lactis.GEN.fasta ----------------------------------AAAGGCUCACCAAGGC d.16.b.S.pyogenes.GEN.fasta ----------------------------------AAAGGCUCACCAAGGC d.16.b.L.acidophilus.fasta ----------------------------------AACGGCCUACCAAGGC d.16.b.M.capricolum.fasta ----------------------------------AAUAGCCCACCUAGGC d.16.b.M.mycoides.fasta ----------------------------------AAUAGCCCACCUAGGC d.16.b.E.rhusiopathiae.fasta ----------------------------------AACGGCUUACCAAGAC d.16.b.C.innocuum.fasta ----------------------------------AACGGCCCACCAAGGC d.16.b.M.genitalium.fasta ----------------------------------AAUGGCCUACCAAGGC d.16.b.M.pneumoniae.GEN.fasta ----------------------------------AACGGCCUACCAAGGC d.16.b.M.pneumoniae.fasta ----------------------------------AACGGCCUACCAAGGC d.16.b.M.gallisepticum.fasta ----------------------------------AAUGGCCCACCAAGGC d.16.b.U.urealyticum.fasta ----------------------------------AAUGGCUCACCAAGUC d.16.b.U.urealyticum.GEN.fasta ----------------------------------AAUGGCUCACCAAGUC d.16.b.M.hyopneumoniae.fasta ----------------------------------AAAAGCCUACCAAGAC d.16.b.F.necrophorum.fasta ----------------------------------AACGGCCCACCAAGGC d.16.b.F.nucleatum.fasta ----------------------------------AACGGCUCACCAAGGC d.16.b.S.moniliformis.fasta ----------------------------------AAAGGCCUACCAAGGC d.16.b.C.botulinum.F.fasta ----------------------------------AACGGCUUACCAAGGC d.16.b.C.tetani.fasta ----------------------------------AAUGGCUUACCAAGGC d.16.b.C.perfringens.fasta ----------------------------------AACGGCCUACCAAGGC d.16.b.C.difficile.fasta ----------------------------------AACGGCUUACCAAGGC d.16.b.E.brachy.fasta ----------------------------------AACGGCUCACCAAGGC d.16.b.Epulopiscium.sp.fasta ----------------------------------AAAAGCUCACCAAGGC d.16.b.H.chlorum.fasta ----------------------------------AAAGGCCUACCAAGGC b.16.m.G.max.fasta -----------------------------------AAGGCUGACCAAGCC b.16.m.O.berteriana.fasta -----------------------------------AAGGCUGACCAAGCC b.16.m.S.cereale.fasta -----------------------------------AAGGCUGACCAAGCC b.16.m.T.aestivum.fasta -----------------------------------AAGGCUGACCAAGCC d.16.m.Z.mays.fasta -----------------------------------AAGGCUGACCAAGCC b.16.m.M.polymorpha.fasta -----------------------------------AAGGCUGACCAAGCC b.16.m.N.olivacea.fasta -----------------------------------AAAGCUCACCAAGCC d.16.b.G.liquefaciens.fasta -----------------------------------AAGGCCCACCAAGGC d.16.b.B.japonicum.fasta -----------------------------------ACGGCCUACCAAGGC d.16.b.R.acidophilus.fasta -----------------------------------AUGGCUCACCAAGGC d.16.b.A.caulinodans.fasta -----------------------------------AAGGCUCACCAAGGC d.16.b.B.quintana.fasta -----------------------------------AGGGCUCACCAAGGC d.16.b.M.loti.fasta -----------------------------------AUGGCCUACCAAGGC d.16.b.A.tumefaciens.fasta -----------------------------------AAGGCCUACCAAGGC d.16.b.B.bacilliformis.fasta -----------------------------------ACGGCCCACCAAGGC d.16.b.B.henselae.fasta -----------------------------------ACGGCUCACCAAGGC d.16.b.B.melitensis.fasta -----------------------------------AAGGCUCACCAAGGC d.16.b.R.orientis.fasta -----------------------------------AUGGCCCACCAAGGC d.16.b.Methylobacterium.sp.fas -----------------------------------ACGGCCUACCAAGGC d.16.b.R.bellii.fasta -----------------------------------AUGGCUCACCAAGCC d.16.b.R.felis.URRWXCal2.fasta -----------------------------------ACGGCUCACCAAGCC d.16.b.R.prowazekii.fasta -----------------------------------AUGGCUCACCAAGCC d.16.b.R.prowazekii.GEN.fasta -----------------------------------AUGGCUCACCAAGCC d.16.b.R.rickettsii.fasta -----------------------------------AUGGCUCACCAAGCC d.16.b.A.calcoaceticus.fasta -----------------------------------AAGGCCUACCAAGGC d.16.b.P.pacificensis.fasta -----------------------------------AAGGCCUACCAUGGC d.16.b.C.marismortui.fasta -----------------------------------ACGGCUCACCAAGGC d.16.b.H.halodenitrificans.fas -----------------------------------ACGGCUCACCAAGAC d.16.b.P.aeruginosa.fasta -----------------------------------AAGGCCUACCAAGGC d.16.b.P.aeruginosa.GEN.fasta -----------------------------------AAGGCCUACCAAGGC d.16.b.Pseudomonas.sp.fasta -----------------------------------AAGGCCUACCAAGGC d.16.b.P.putida.fasta -----------------------------------AUGGCUCACCAAGGC d.16.b.C.burnetii.fasta -----------------------------------AUGGCCUACCAAGGC d.16.b.M.capsulatus.fasta -----------------------------------AAGGCCUACCAAGGC d.16.b.L.pneumophila.1.fasta -----------------------------------AGGGCCUACCAAGGC d.16.b.L.pneumophila.2.fasta -----------------------------------AGGGCCUACCAAGGC d.16.b.A.vinosum.fasta -----------------------------------AAGGCCCACCAAGGC d.16.b.Beggiatoa.sp.fasta -----------------------------------AAGGCCUACCAAGGC d.16.b.A.hydrophila.fasta -----------------------------------AUGGCUCACCAAGGC d.16.b.S.putrefaciens.fasta -----------------------------------AUGGCUCACCAAGGC d.16.b.C.freundii.fasta -----------------------------------ACGGCUCACCUAGGC d.16.b.S.dysenteriae.1.fasta -----------------------------------AUGGCUCACCUAGGC d.16.b.K.pneumoniae.fasta -----------------------------------ACGGCUCACCUAGGC d.16.b.P.shigelloides.fasta -----------------------------------AUGGCUCACCAAGGC d.16.b.Y.pestis.fasta -----------------------------------AUGGCUCACCUAGGC d.16.b.Y.pseudotuberculosis.fa -----------------------------------AUGGCUCACCUAGGC d.16.b.S.dysenteriae.2.fasta -----------------------------------ACGGCUCACCUAGGC d.16.b.E.coli.0157G.GEN.fasta -----------------------------------ACGGCUCACCUAGGC d.16.b.E.coli.EDL.GEN.fasta -----------------------------------ACGGCUCACCUAGGC d.16.b.E.coli.fasta -----------------------------------ACGGCUCACCUAGGC d.16.b.E.coli.K12.GEN.fasta -----------------------------------ACGGCUCACCUAGGC h.16.b.E.coli.hlxnum.fasta -----------------------------------ACGGCUCACCUAGGC m.16.b.E.coli.mhg.fasta -----------------------------------ACGGCUCACCUAGGC s.16.b.E.coli.schem.fasta -----------------------------------ACGGCUCACCUAGGC d.16.b.S.typhimurium.fasta -----------------------------------ACGGCUCACCAAGGC d.16.b.S.marcescens.fasta -----------------------------------AUGGCUCACCUAGGC d.16.b.E.tarda.fasta -----------------------------------AUGGCUCACCUAGGC d.16.b.P.vulgaris.fasta -----------------------------------AUGGCUCACCUAGGC d.16.b.V.cholerae4.fasta -----------------------------------AGGGCUCACCAAGGC d.16.b.V.cholerae5.fasta -----------------------------------AGGGCUCACCAAGGC d.16.b.V.cholerae2.fasta -----------------------------------AGGGCUCACCAAGGC d.16.b.V.cholerae6.fasta -----------------------------------AGGGCUCACCAAGGC d.16.b.V.cholerae.fasta -----------------------------------AGGGCUCACCAAGGC d.16.b.V.cholerae.GEN.fasta -----------------------------------AGGGCUCACCAAGGC d.16.b.V.parahaemolyticus.fast -----------------------------------AGGGCUCACUAAGGC d.16.b.H.influenzae7.fasta -----------------------------------AAUGCCUACCAAGCC d.16.b.H.influenzae8.fasta -----------------------------------AAGGCCUACCAAGCC d.16.b.H.influenzae6.fasta -----------------------------------AAGGCUCACCAAGCC d.16.b.H.influenz.fasta -----------------------------------AAUGCCUACCAAGCC d.16.b.H.influenzae.fasta -----------------------------------AAUGCCUACCAAGCC d.16.b.P.multocida.fasta -----------------------------------AAGGCCUACCAAGCC d.16.b.P.multocida.GEN.fasta -----------------------------------AAGGCCUACCAAGCC d.16.b.X.albilineans.fasta -----------------------------------AAGGCCCACCAAGGC d.16.b.X.campestris.fasta -----------------------------------AAGGCCCACCAAGGC d.16.b.X.fastidiosa.GEN.fasta -----------------------------------AAGGCUCACCAAGGC d.16.b.D.nodosus.fasta -----------------------------------AGAGCCUACCAAGGC d.16.b.F.tularensis.fasta -----------------------------------AGGGCCCACCAAGGC d.16.b.B.parapertussis.fasta -----------------------------------ACGGCCUACCAAGGC d.16.b.B.pertussis.fasta -----------------------------------ACGGCCUACCAAGGC d.16.b.B.bronchiseptica2.fasta -----------------------------------ACGGCCUACCAAGGC d.16.b.u.proteobacterium.fasta -----------------------------------AAGGCCUACCAAGGC d.16.b.B.mallei.fasta -----------------------------------AAGGCCUACCAAGGC d.16.b.Burkholderia.sp.fasta -----------------------------------AAGGCCUACCAAGGC d.16.b.N.meningitidis.MD58.GEN -----------------------------------AAGGCCUACCAAGGC d.16.b.N.meningitidis.Z2491.GE -----------------------------------AAGGCCUACCAAGGC d.16.b.N.gonorrhoeae.fasta -----------------------------------AAGGCCCACCAAGGC d.16.b.C.testosteroni.fasta -----------------------------------AAGGCUUACCAAGCC d.16.b.D.desulfuricans.fasta -----------------------------------ACGGCCCACCAAGGC d.16.b.M.xanthus.fasta -----------------------------------AUGGCCCACCAAGGC d.16.b.D.thermophilus.fasta -----------------------------------ACGGCUCACCAAGGC d.16.b.B.burgdorferi.fasta -----------------------------------AAUGCCUACCAAGGC d.16.b.B.burgdorferi.GEN.fasta -----------------------------------AAUGCCUACCAAGGC d.16.b.B.hermsii.fasta -----------------------------------AAAGCCUACCAAGGC d.16.b.S.aurantia.fasta -----------------------------------AAGGCCUACCAAGGC d.16.b.T.pallidum.A.fasta -----------------------------------AUGGCCUACCAAGGC d.16.b.L.illini.fasta -----------------------------------ACGGCUCACCAAGCC d.16.b.L.interrogans.fasta -----------------------------------AAGGCUCACCAAGGC d.16.b.C.trachomatis.GEN.fasta -----------------------------------AAGGCCUACCAAGGC d.16.b.C.trachomatis.L2.fasta -----------------------------------AAGGCCUACCAAGGC d.16.b.C.muridarum.fasta -----------------------------------AAGGCCUACCAAGGC d.16.b.C.pneumoniae.AR39.fasta -----------------------------------AAAGCCCACCAAGGC d.16.b.C.pneumoniae.fasta -----------------------------------AAAGCCCACCAAGGC d.16.b.C.pneumoniae.J138.fasta -----------------------------------AAAGCCCACCAAGGC d.16.b.C.pneumoniae.CWL029.fas -----------------------------------AAAGCCCACCAAGGC d.16.b.C.psittaci.fasta -----------------------------------AUGGCCUACCAAGGC d.16.b.D.radiodurans.1.fasta -----------------------------------AAGGCCUACCAAGGC d.16.b.D.radiodurans.GEN.fasta -----------------------------------AAGGCCUACCAAGGC d.16.b.B.fragilis.fasta -----------------------------------ACGGCUCACCAAGCC d.16.b.P.gingivalis.fasta -----------------------------------ACGGCUCACCAAGGC d.16.b.C.vibrioforme.fasta -----------------------------------ACGGCCCACCAAGCC d.16.b.C.jejuni.fasta -----------------------------------AUGGCUUACCAAGGC d.16.b.C.jejuni.GEN.fasta -----------------------------------AUGGCUUACCAAGGC d.16.b.C.sputorum.fasta -----------------------------------AUGGCUUACCAAGGC d.16.b.H.pylori.26695.GEN.fast -----------------------------------AUGGCUUACCAAGGC d.16.b.H.pylori.J99.GEN.fasta -----------------------------------AUGGCUUACCAAGGC d.16.b.H.pylori2.fasta -----------------------------------AUGGCUUACCAAGGC d.16.b.A.capsulatum.fasta -----------------------------------AUGGCCCACCAAGGC d.16.b.H.foetida.fasta -----------------------------------ACGGCCCACCAAGGC d.16.b.A.globiformis.fasta -----------------------------------AUGGCUCACCAAGGC d.16.b.M.luteus.fasta -----------------------------------AUGGCUCACCAAGGC d.16.b.Frankia.sp.fasta -----------------------------------AUGGCCUACCAAGGC d.16.b.S.bottropensis.fasta -----------------------------------ACGGCUCACCAAGGC d.16.b.S.scabiei.fasta -----------------------------------ACGGCUCACCAAGGC d.16.b.S.neyagawaensis.fasta -----------------------------------ACGGCUCACCAAGGC d.16.b.S.diastatochromogenes.f -----------------------------------ACGGCUCACCAAGGC d.16.b.Streptomyces.sp.fasta -----------------------------------GUGGCUCACCAAGGC d.16.b.S.acidiscabies.fasta -----------------------------------AUGGCUCACCAAGGC d.16.b.S.griseus.fasta -----------------------------------AUGGCCUACCAAGGC d.16.b.S.ornatus.fasta -----------------------------------AUGGCCUACCAAGGC d.16.b.S.subrutilus.fasta -----------------------------------AUGGCCCACCAAGGC d.16.b.S.bikiniensis.fasta -----------------------------------ACGGCCCACCAAGGC d.16.b.S.galbus.fasta -----------------------------------AUGGCUCACCAAGGC d.16.b.S.hygroscopicus.fasta -----------------------------------AUGGCUCACCAAGGC d.16.b.S.lincolnensis.fasta -----------------------------------AUGGCUCACCAAGGC d.16.b.S.coelicolor.fasta -----------------------------------AUGGCUCACCAAGGC d.16.b.S.tendae.fasta -----------------------------------AUGGCUCACCAAGGC d.16.b.S.ambofaciens.fasta -----------------------------------GUGGCUCACCAAGGC d.16.b.S.eurythermus.fasta -----------------------------------AUGGCUCACCAAGGC d.16.b.S.nodosus.fasta -----------------------------------ACGGCUCACCAAGGC d.16.b.S.sampsonii.fasta -----------------------------------GUGGCUCACCAAGGC d.16.b.S.glaucescens.fasta -----------------------------------ACGGCUCACCAAGGC d.16.b.S.pseudogriseolus.fasta -----------------------------------AUGGCUCACCAAGGC d.16.b.S.caelestis.fasta -----------------------------------AUGGCUCACCAAGGC d.16.b.S.bluensis.fasta -----------------------------------AUGGCUCACCAAGGC d.16.b.S.espinosus.fasta -----------------------------------ACGGCUCACCAAGGC d.16.b.S.mashuensis.fasta -----------------------------------AUGGCUCACCAAGGC d.16.b.S.rimosus.fasta -----------------------------------AUG-CCUACCAAGGC d.16.b.S.limosus.fasta -----------------------------------GUGGCUCACCAAGGC d.16.b.S.odorifer.fasta -----------------------------------GUGGCUCACCAAGGC d.16.b.S.felleus.fasta -----------------------------------GUGGCUCACCAAGGC d.16.b.S.albidoflavus.fasta -----------------------------------GUGGCUCACCAAGGC d.16.b.S.gougerotii.fasta -----------------------------------GUGGCUCACCAAGGC d.16.b.S.rutgersensis.fasta -----------------------------------GUGGCUCACCAAGGC d.16.b.S.intermedius.fasta -----------------------------------GUGGCUCACCAAGGC d.16.b.S.thermodiastaticus.fas -----------------------------------ACGGCUCACCGAGGC d.16.b.S.thermoviolaceus.fasta -----------------------------------ACGGCUCACCAAGGC d.16.b.S.thermovulgaris.1.fast -----------------------------------ACGGCUCACCAAGGC d.16.b.S.thermovulgaris.2.fast -----------------------------------ACGGCUCACCAAGGC d.16.b.S.macrosporus.fasta -----------------------------------ACGGCCCACCAAGGC d.16.b.S.megasporus.fasta -----------------------------------ACGGNCCACCAAGGC d.16.b.S.thermolineatus.fasta -----------------------------------AUGGCCCACCAAGGC d.16.b.M.tuberculosis.2.fasta -----------------------------------ACGGCCUACCAAGGC d.16.b.M.tuberculosis.3.fasta -----------------------------------ACGGCCUACCAAGGC d.16.b.M.avium.fasta -----------------------------------ACGGCCUACCAAGGC d.16.b.M.leprae.fasta -----------------------------------ACGGCCUACCAAGGC d.16.b.M.leprae.GEN.fasta -----------------------------------ACGGCCUACCAAGGC d.16.b.M.tuberculosis.CDC1551. -----------------------------------ACGGCCUACCAAGGC d.16.b.M.tuberculosis.GEN.fast -----------------------------------ACGGCCUACCAAGGC d.16.b.N.asteroides.fasta -----------------------------------AUGGCCUACCAAGGC d.16.b.R.erythropolis.fasta -----------------------------------AUGGCCUACCAAGGC d.16.b.C.diphtheriae.fasta -----------------------------------AUGGCCUACCAAGGC d.16.b.A.israelii.fasta -----------------------------------AUGGCCUGCCAAGGC d.16.b.B.hyodysenteriae.fasta -----------------------------------ACGGCCUACCAAAGC d.16.b.G.subterranea.fasta -----------------------------------AGAGCCUACCNAGCC d.16.b.P.miotherma.fasta -----------------------------------AAGGCUYACCNAGCC d.16.b.B.andersonii.fasta -----------------------------------AAGGCUGACCAAGGC d.16.b.H.aurantiacus.fasta -----------------------------------AUGGCGCACCAAGUC d.16.b.Leptospirillium.sp.fast -----------------------------------AAGGCCUACCAAGGC d.16.b.A.aeolicus.fasta -----------------------------------ACGGCCCACCAAGCC d.16.b.A.pyrophilus.fasta -----------------------------------ACGGCCCACCAAGCC d.16.b.T.maritima.fasta -----------------------------------ACGGCCCACCAAGCC d.16.b.T.maritima.GEN.fasta -----------------------------------ACGGCCCACCAAGCC n.16.b.T.thermophilus.2.num.fa -----------------------------------AUGGCCCACCAAGGC s.16.b.T.thermophilus.2.schem. -----------------------------------AUGGCCCACCAAGGC d.16.b.T.thermophilus.2.fasta -----------------------------------AUGGCCCACCAAGGC s.16.b.T.thermophilus.1.schem. -----------------------------------AUGGCCCACCAAGGC n.16.b.T.thermophilus.1.num.fa -----------------------------------AUGGCCCACCAAGGC d.16.b.T.thermophilus.1.fasta -----------------------------------AUGGCCCACCAAGGC d.16.b.T.aquaticus.fasta -----------------------------------AGAGCCCACCAAGGC d.16.b.T.roseum.fasta -----------------------------------ACGGCCUACCGUGGC d.16.b.P.marina.fasta -----------------------------------AUGGCCUACCAAGGC d.16.b.P.staleyi.fasta -----------------------------------AUGGCCUACCAAGGC d.16.b.P.Schlesner.fasta -----------------------------------AUGGCUCACCAAGGC d.16.b.G.obscuriglobus.1.fasta -----------------------------------ACGGCCCACCAAGGC d.16.b.I.pallida.fasta -----------------------------------ACGGCCCACNAAGCC d.16.a.P.abyssi.fasta -----------------------------------ACGGCCCACCAAGCC d.16.a.P.horikoshii.fasta -----------------------------------ACGGCCCACCAAGCC d.16.a.P.furiosus.fasta -----------------------------------ACGGCCCACCAAGCC d.16.a.T.celer.fasta -----------------------------------ACGGCCCACCAAGCC d.16.a.A.fulgidus.fasta -----------------------------------ACGGCCCACCAAGCC d.16.a.N.equitans.fasta -----------------------------------AUGGCCCGCCAAGCC d.16.a.A.pernix.K1.fasta -----------------------------------AUGGCCCGCCAAGCC d.16.a.P.occultum.fasta -----------------------------------ACGGCCCGCCAAGCC d.16.a.T.tenax.fasta -----------------------------------ACGGCCCGCCAAGCC d.16.a.S.acidocaldarius.fasta -----------------------------------AAGGCCCACCGAACC d.16.a.S.solfataricus.fasta -----------------------------------AAGGCCCACCGAACC d.16.a.S.solfataricus.2.fasta -----------------------------------AGGGCCCCCCAAGCC d.16.a.M.thermautotrophicus.1. -----------------------------------ACGGCCUACCAAGCC d.16.a.M.thermautotrophicus.2. -----------------------------------ACGGCCUACCAAGCC d.16.a.M.formicicum.fasta -----------------------------------AAUGCCCACCAAGCC d.16.a.M.vannielii.fasta -----------------------------------AUGGCCCACCAAGCC d.16.a.H.marismortui.rrnA.fast -----------------------------------ACGGCCCACCAUGCC d.16.a.H.marismortui.rrnB.fast -----------------------------------ACGGCCCACCAUGCC d.16.a.Halobacterium.sp.fasta -----------------------------------ACGGCCCACCGUGCC d.16.a.N.bangense.fasta -----------------------------------ACGGCCCACCGUGCC d.16.a.N.innermongoliae.fasta -----------------------------------ACGGCCCACCGUGCC d.16.a.H.volcanii.fasta -----------------------------------ACGGCCCACCGUGCC d.16.a.M.hungatei.fasta -----------------------------------ACGGCCCAACAAGCC d.16.a.P.torridus.fasta -----------------------------------ACGGACCACCUAGCC d.16.a.T.acidophilum.fasta -----------------------------------AAGGACCACCUAGCC a.16.e.G.ardeae.fasta -------------------------------------------------- d.16.e.G.intestinalis.fasta -------------------------------------------------- a.16.e.G.muris.fasta -------------------------------------------------- d.16.e.A.bracteata.fasta -------------------------------------------------- d.16.e.Glomus.sp.W3349.fasta UAAGGGGUAUGA----------------------ACUGGUGUAGUGA--- d.16.e.S.cerradensis.fasta U----UGUCUGU----------------------ACUGGCGUGUAGA--- a.16.e.G.intraradices.fasta CU---GGUAUGU----------------------ACUGGUCUCACUG--- d.16.e.S.culisetae.fasta GAUUGAGUAGGUUGCUUCGGUA--AUUUUAUUCGACUAGUGUAUUUACAA a.16.e.P.balamuthi.fasta AUAUUAGUAUUUAGRRGGAGCAAUCCUUUUAAGUAUUGRUGUAUCAGUUC d.16.e.A.flavus.fasta ---UCCGCCU--------------CACCGCGAGUACUGGU---CCGGCUG d.16.e.T.caries.fasta ---UCCGCCU--------------CACGGCGUGUACUGCUUGGCCGGGUC d.16.e.M.circinelloides.fasta GGCCUGGUCUUC----------------------AUUGAUCAAGCUC--- d.16.e.M.racemosus.fasta GGCCUGGUCUUC----------------------AUUGAUCAAGCUC--- d.16.e.R.oryzae.fasta GGCCUGGUCUUC----------------------AUUGACCAAGCUC--- a.16.e.M.edulis.fasta GACG----CCUGUC------------------------------------ a.16.e.P.magellanicus.fasta ACUC----CUUGGU------------------------------------ b.16.e.E.granulosus.fasta GGCCGGUGUGUGGUUAUC--------GGUGCGCGGUUGCCUCGGCGCCUG d.16.e.D.melanogaster.fasta AACU----UACAAUUGU----------------GGUUAGUACUAUACCUU b.16.e.C.koreana.fasta AUCU----UGCGAU--------------------GUU------------- b.16.e.A.australis.fasta CGCC------CGGU-------------------GGUUA------------ b.16.e.O.utahensis.fasta GCCCG----UCGGU--------------------GUCAACUG---GCAUG b.16.e.A.salina.fasta CGCCU---CACGGU------------------------------------ d.16.e.M.musculus.fasta GCCG----CGAGGC------------------------------------ d.16.e.R.norvegicus.fasta GCCG----CGAGGC------------------------------------ d.16.e.H.sapiens.fasta GCCG----CGAGGC------------------------------------ d.16.e.O.cuniculus.fasta GCCG----CGAGGC------------------------------------ d.16.e.X.borealis.fasta GCCG----CAAGGC------------------------------------ d.16.e.X.laevis.fasta GCCG----CGAGGC------------------------------------ d.16.e.A.castellanii.fasta GCCCGUGUCGUCGGGUCAAACC---GGCGACUGCGUUGGCGUUGCGGGCU d.16.e.B.mandrillaris.fasta -----------------------------------UUGGCA----GGGCU d.16.e.P.falciparum.A.fasta ---------------------------GUAACUAUUCUAGG----GGAAC d.16.e.P.falciparum.S.fasta ---------------------------UAAACUGGUUUGGG----AAAAC d.16.e.P.vivax.A.fasta ---------------------------CAACGCUUCUAGCU----UAAUC d.16.e.P.vivax.O.fasta ---------------------------CAACGCGUUUAGCU----UAAUC d.16.e.P.vivax.S.fasta ---------------------------UAACGCCGUUAGCU----AGAUC d.16.e.E.histolytica.fasta -------------------------------ACAUUUUG----------- d.16.e.I.hoferi.fasta ---------------------------------GGUCGGCC--------- d.16.e.Dermocystidium.sp.fasta -----------------------------------UUGGUC--------- d.16.e.S.destruens.fasta -----------------------------------UUGGGC--------- d.16.e.A.unguiculata.fasta -----------------------------------CUGGGG--------- d.16.e.D.grandis.fasta -----------------------------------GAGGGG--------- d.16.e.A.macrogynus.fasta ---------------------------------AGCUAGCC--------- d.16.e.B.emersonii.fasta ---------------------------------ACCUGGCC--------- d.16.e.C.albicans.fasta UUUUGAUGCGUACUGGAC--CC---AGCCGAGCCUUUCCUUCUGGGUAGC d.16.e.S.cerevisiae.fasta UUUU--CGUGUACUGGAUUUCC---AACGGGGCCUUUCCUUCUGGCUAAC d.16.e.N.crassa.fasta CA-CCGCGUGCACUGACU---G---GGUCGGGCCUUUUUUCCUGGAGAAC d.16.e.P.anserina.fasta CA-CCGGGUGCACUGGCU---C---GGCCGGGCCUUUCCUUCUGGAGAAC d.16.e.C.immitis.fasta CG-CGGCGUGCACUGGUC---C---GGCUGGACCUUUCCUUCUGGGGAAC d.16.e.L.major.fasta CA-UGUCGGAUUUGGU-----G---ACCCAGGCCCUUGCAGCCCGUGAAC d.16.e.T.cruzi.fasta CA-CUUCGGAUU-GGU-----G---ACCCAUGCCCUUGUGGUCCGUGAAC d.16.e.T.brucei.fasta CA-CCUCGGACGUGUUUU---G---ACCCACGCCCUCGUGGCCCGUGAAC d.16.e.P.carinii.fasta AAGUUGUGUGCACUGGCG---C---AACUGAUCCUUCCCUCCUGGAUUAC d.16.e.C.neoformans.fasta ---------------------------CGAGGCGGUCCUCC--------- d.16.e.Fungus.sp.QPX.fasta ---------------------------CGGGACGGUCCGCC--------- d.16.e.U.maydis.fasta ---------------------------ACGCUGGGUCUGCU--------- d.16.e.M.leidyi.fasta ---------------------------CCGAUUGGUCCGUC--------- d.16.e.T.cystophora.fasta ---------------------------GUUGACGGUCUGCC--------- d.16.e.M.prolifera.fasta ---------------------------CUGGCUGGUCCGUC--------- d.16.e.P.haeckeli.fasta ---------------------------------CUUUUCC---------- d.16.e.E.rotunda.fasta ---------------------------CAAAUUGGCCCGUU--------- d.16.e.P.chromatophora.fasta ---------------------------CGGGCACGUCGGCG--------- d.16.e.A.majus.fasta --------------------------CCGG-CCGGUCCGCC--------- d.16.e.S.indicum.fasta --------------------------CCGG-CCGGUCCGCC--------- d.16.e.D.grandiflora.fasta --------------------------UCGG-CCGGUCCGCC--------- d.16.e.Pla.lanceolata.fasta --------------------------CCGA-UCGGUCCGCC--------- d.16.e.N.tabacum.fasta --------------------------CCGG-CCGGUCCGCC--------- d.16.e.A.thaliana.fasta --------------------------UCGG-CCGGUCCGCC--------- d.16.e.S.alba.fasta --------------------------UCGC-CCGGUCCGCG--------- d.16.e.S.tuberosum.fasta --------------------------ACGG-CCGGUCCGCC--------- d.16.e.F.x.ananassa.fasta --------------------------UCGA-CCGGUCCGCC--------- d.16.e.G.max.fasta --------------------------UCGA-UCGGUCCGCC--------- d.16.e.O.sativa.fasta --------------------------CCGGGCCGGUCCGCC--------- d.16.e.Z.mays.fasta --------------------------CCGGGUGCCGCCGCC--------- d.16.e.A.verticilliflorum.fast --------------------------UUUGAUCGGUCUACC--------- d.16.e.G.spirotaenia.fasta --------------------------GAAU-UCGGUCUGCCA-------- d.16.e.Staurastrum.sp.M752.fas --------------------------GGAU-UCGGUCUGCC--------- d.16.e.C.paradoxa.fasta --------------------------GCAG-UCGGUCUGCCU-------- d.16.e.G.nostochinearum.fasta --------------------------GCGG-CUGGUCUGCCU-------- d.16.e.G.wittrockiana.fasta --------------------------ACGA-UCGGUCUGCCC-------- d.16.e.C.luteoviridis.fasta --------------------------CUGA-CCGGUCCACC--------- d.16.e.O.longa.fasta ---------------------------------UGCCAAUGU-------- d.16.e.P.weissei.fasta ---------------------------------CGCCAAUGU-------- d.16.e.C.citrina.fasta ---------------------------------CGUCGAAGU-------- d.16.e.G.steinii.fasta ---------------------------------UGCCGAUGU-------- d.16.e.Ple.lanceolata.fasta ---------------------------------UGCCAAUGU-------- d.16.e.O.quadricornutus.fasta ---------------------------------UGCCAAUGU-------- d.16.e.S.lemnae.fasta ---------------------------------CGCCAAUGU-------- d.16.e.S.mytilus.fasta ---------------------------------UGCCAAUGU-------- d.16.e.E.mobilis.fasta ---------------------------------CUCCAAUGU-------- d.16.e.O.granulifera.1.fasta ---------------------------------UGCCAAUGU-------- d.16.e.O.granulifera.2.fasta ---------------------------------UGCUGAUGU-------- d.16.e.U.gallina.fasta ---------------------------------UGCCAAUGU-------- d.16.e.U.pisces.fasta ---------------------------------UGCCAAUGU-------- d.16.e.P.lepisma.fasta ---------------------------------UGCCGAUGU-------- d.16.e.U.grandis.fasta ---------------------------------UGACAAAGU-------- d.16.e.B.coli.fasta -------------------------------------------------- d.16.e.E.aediculatus.fasta ---------------------------------AGACGGGAG-------- d.16.e.T.thermophila.fasta ---------------------------------UUC--AUUU-------- d.16.e.Bangia.sp.NWT.fasta ----------------------------------CCCCACGG-------- d.16.e.Bangia.sp.VIS7.fasta ----------------------------------GUUCACGG-------- d.16.e.E.carnea.fasta ----------------------------------CCGCACG--------- d.16.e.R.parvula.fasta ----------------------------------UUGCACG--------- d.16.e.C.coeruleus.fasta ----------------------------------UUGGACGC-------- d.16.e.P.aerugineum.1.fasta ----------------------------------GASAUYGU-------- d.16.e.R.maculata.fasta ----------------------------------CCCGGUGU-------- d.16.e.A.ambigua.fasta -------------------------------UCGGUCUGU-C-------- d.16.e.A.baicalensis.fasta -------------------------------UCGGUCUGU-C-------- d.16.e.S.nipponica.fasta -------------------------------GCAACCGGU-C-------- d.16.e.C.radiatus.fasta -------------------------------GCAAUCAGU-G-------- d.16.e.C.criophilum.fasta -------------------------------CUGGUGGGU-C-------- d.16.e.A.capitellata.fasta -------------------------------CCUGUGG-UCC-------- d.16.e.S.pupula.fasta -------------------------------GGUGCGGCUCC-------- d.16.e.T.antarctica.fasta -------------------------------CCAGUUGGCCU-------- d.16.e.E.triangulatum.fasta -------------------------------UGGAGAGUCCU-------- d.16.e.A.bongranii.fasta -------------------------------GCGGGAGGCCU-------- d.16.e.Pseudogomphonema.sp.fas -------------------------------GGCG-AGCUCC-------- d.16.e.D.tenue.fasta -------------------------------GCGACC-GGCC-------- d.16.e.G.marina.fasta -------------------------------GCGACC-GGUC-------- d.16.e.Thalassionema.sp.fasta -------------------------------UUGGCUUGGUC-------- d.16.e.R.belgicae.fasta -------------------------------GUGGCU-GGCC-------- d.16.e.Undatella.sp.fasta -------------------------------UCUGUGUGCCC-------- d.16.e.C.belgica.fasta -------------------------------GCGACCGGU-C-------- d.16.e.O.sinensis.fasta -------------------------------GCAAUCGGUAC-------- d.16.e.D.brightwellii.fasta -------------------------------GCGAUCGGU-C-------- d.16.e.L.undulatum.fasta -------------------------------GCGAUCGGU-C-------- d.16.e.T.eccentrica.fasta -------------------------------GUGACCGGU-C-------- d.16.e.T.pseudonana.fasta -------------------------------GCGACCGGU-C-------- d.16.e.S.costatum.fasta -------------------------------GUGGCCGGC-C-------- d.16.e.P.laevis.fasta -------------------------------GCGAUGGGU-U-------- d.16.e.L.borealis.fasta -------------------------------UCGACCGGU-C-------- d.16.e.P.pseudodenticulata.fas -------------------------------UCGACCGGU-C-------- d.16.e.B.mediterranea.fasta -------------------------------CGGCGUGGUC--------- d.16.e.B.pacifica.fasta -------------------------------UCGUUUGGCC--------- d.16.e.L.minuta.fasta -------------------------------GUGACCGUUCC-------- d.16.e.L.danicus.fasta -------------------------------UCCACUGGCCU-------- d.16.e.Chaetoceros.sp.fasta -------------------------------GGGAUUAGU-C-------- d.16.e.A.invadans.fasta -------------------------------GCGUCCGGUCG-------- d.16.e.L.giganteum.fasta -------------------------------GCGUCCGGUCC-------- d.16.e.M.varians.fasta --------------------------------UGGCUUAUUC-------- d.16.e.B.hominis.fasta -------------------------------GCUGUUG------------ d.16.e.P.marinus.fasta ----------------------------------CCUUGGGCG------- d.16.e.T.gondii.fasta ----------------------------------CUGGAAGCA------- d.16.e.A.fundyense.fasta ----------------------------------CUGAGGAUG------- d.16.e.B.bigemina.fasta ----------------------------------CCUCGC---------- d.16.e.B.canis.fasta ----------------------------------CUUGGC---------- d.16.e.Babesia.sp.OKD.fasta ----------------------------------CGUUGCC--------- d.16.e.B.microti.1.fasta ----------------------------------CCUUGUCAU------- d.16.e.B.microti.2.fasta ----------------------------------CCUUGUCAU------- d.16.e.B.microti.3.fasta ----------------------------------CCUUGUCAU------- d.16.e.B.microti.4.fasta ----------------------------------CCUUGUCAU------- d.16.e.B.microti.5.fasta ----------------------------------CCUUGUCAU------- d.16.e.B.rodhaini.fasta ----------------------------------CCUCGUCGU------- d.16.e.B.gibsoni.fasta ----------------------------------CC--GCCGG------- d.16.e.B.bovis.fasta ----------------------------------GUCCCCC--------- d.16.e.J.libera.fasta ---------------------------------CCCCUGACGUU------ d.16.e.R.americana.fasta ---------------------------------CCCCUGUUGU------- d.16.e.B.ostreae.fasta ---------------------------------GGCCGGCCCG------- d.16.e.A.dasyae.fasta -------------------------GCCCGUGCUGUGCGCGUAG------ d.16.e.A.hermannii.fasta -------------------------GCCCGUGCUGUGCGCGUAG------ d.16.e.N.helminthoides.fasta -------------------------GCCCGUGCUGUGUGCGUGG------ d.16.e.B.gelatinosum.fasta -------------------------CGCCGGGCUGUGCGCGUAA------ d.16.e.N.tortuosa.fasta -------------------------GCCCGCGCUGUGCGCGUAG------ d.16.e.T.hispida.fasta -------------------------CCCGGCGCCGUGCGCGUAG------ d.16.e.T.violacea.4.fasta -------------------------CCCGGCGCCGUGCGCGUAG------ d.16.e.T.violacea.1.fasta -------------------------GCCGGCGCUGUGCGCGUAAA----- d.16.e.T.violacea.2.fasta -------------------------GCCGGCGCUGUGGGCGUAAA----- d.16.e.N.shawii.fasta -------------------------GCCCGCGCUGUGCGCGUAG------ d.16.e.B.investiens.fasta -------------------------CCCGGUGCUGUGCGCGUAA------ d.16.e.B.macrosporum.fasta -------------------------GGCCGGGCUGUGCGCGUCA------ d.16.e.A.plicata.fasta -------------------------GGCGUCUGGCGGAGAGUAA------ d.16.e.C.officinalis.fasta -------------------------UCCGGAUGUGUGCGCGUCG------ d.16.e.R.carriebowensis.fasta -------------------------CUUGCGGGUGCGCGCGUUG------ d.16.e.B.hamifera.fasta -------------------------GCGCGGGGCGUCCUCACGGA----- d.16.e.G.vagum.fasta -------------------------ACGCAGGGCGUCUUUGCGGA----- d.16.e.C.crispus.fasta -------------------------GUCCAGGGCGUCCUCGCGGA----- d.16.e.H.plana.fasta -------------------------ACUUAAGUCGUCUUUACCGA----- d.16.e.R.leptophylla.fasta -------------------------ACUUGCCUCGUCCUCGCGGA----- d.16.e.P.pulvinata.fasta -------------------------AUGUGGGGCGUCUUAACCGA----- d.16.e.C.rubrum.fasta -------------------------CCUCGAGUCGGCCUCACGGU----- d.16.e.Gracilariopsis.sp.fasta -------------------------AUUUGGGUCGUUCUCGCGGA----- d.16.e.B.moritziana.fasta -------------------------UUGCUGAAACUCCGUAAGGA----- d.16.e.H.rubra.fasta -------------------------GGCGGUGGUGUGGGCGCAA------ d.16.e.D.grisea.fasta -------------------------GUUGAAUCUAUUGUGCUAUA----- d.16.e.N.fowleri.fasta -------------------------UACGGGGUAACUAGUUCCAUCAGGA d.16.e.N.gruberi.fasta -------------------------UGUGUAGUAAUUAGUUUUACCAGAG a.16.e.Hexamita.sp.fasta -------------------------------------------------- d.16.e.T.foetus.fasta -------------------------------------------------- d.16.e.A.khaliulini.fasta -------------------------------------------------- d.16.e.E.aedis.fasta AAUCUGUGGAUUGUGCUAUAAUU--------------------------- d.16.e.A.connecticus.fasta -------------------------------------------------- d.16.e.I.barri.fasta -------------------------------------------------- d.16.e.A.ferocious.fasta -------------------------------------------------- d.16.e.Amblyospora.sp.fasta -------------------------------------------------- d.16.e.C.lunata.fasta -------------------------------------------------- d.16.e.P.anophelis.fasta -------------------------------------------------- d.16.e.Hazardia.sp.fasta -------------------------------------------------- d.16.e.H.milleri.fasta -------------------------------------------------- d.16.e.P.simulii.fasta -------------------------------------------------- d.16.e.W.palustris.fasta -------------------------------------------------- d.16.e.Nosema.sp.03.fasta -------------------------------------------------- d.16.e.Nosema.sp.05.fasta -------------------------------------------------- d.16.e.Endoreticulatus.sp.fast -------------------------------------------------- d.16.e.Nosema.sp.02.fasta -------------------------------------------------- d.16.e.N.spodopterae.fasta -------------------------------------------------- d.16.e.N.trichoplusiae.fasta -------------------------------------------------- d.16.e.N.bombycis.27.fasta -------------------------------------------------- d.16.e.N.bombycis.02.fasta -------------------------------------------------- d.16.e.V.imperfecta.fasta -------------------------------------------------- d.16.e.N.furnacalis.fasta -------------------------------------------------- d.16.e.Microsporidium57864.fas -------------------------------------------------- d.16.e.Vairimorpha.sp.C21.fast -------------------------------------------------- d.16.e.N.oulemae.fasta -------------------------------------------------- d.16.e.N.necatrix.fasta -------------------------------------------------- d.16.e.V.necatrix.fasta -------------------------------------------------- d.16.e.N.apis.fasta -------------------------------------------------- d.16.e.O.occidentalis.fasta -------------------------------------------------- d.16.e.Microsporidium.sp.DP119 -------------------------------------------------- d.16.e.V.corneae.fasta -------------------------------------------------- d.16.e.A.michaelis.fasta -------------------------------------------------- d.16.e.T.contejeani.fasta -------------------------------------------------- d.16.e.E.hellem.fasta -------------------------------------------------- d.16.e.Encephalitozoon.sp.fast -------------------------------------------------- d.16.e.E.cuniculi.fasta -------------------------------------------------- d.16.e.O.colligata.fasta -------------------------------------------------- d.16.e.E.salmonis.fasta -------------------------------------------------- d.16.e.N.salmonis.fasta -------------------------------------------------- d.16.e.Enterocytozoonidae.sp.f -------------------------------------------------- d.16.e.E.bieneusi.fasta -------------------------------------------------- d.16.e.B.algerae.fasta -------------------------------------------------- d.16.e.T.solenopsae.fasta -------------------------------------------------- d.16.e.V.acridophagus.fasta -------------------------------------------------- d.16.e.Bacillidium.sp.fasta -------------------------------------------------- d.16.e.P.cristatellae.fasta CUCGAUA------------------------------------------- d.16.e.Pleistophora.sp.fasta -------------------------------------------------- d.16.e.O.operophterae.fasta -------------------------------------------------- d.16.e.F.magnivora.fasta -------------------------------------------------- d.16.e.G.atherinae.fasta -------------------------------------------------- d.16.e.Ichthyosporidium.sp.fas -------------------------------------------------- d.16.e.L.acerinae.fasta -------------------------------------------------- d.16.e.H.anguillarum.fasta -------------------------------------------------- d.16.e.P.mirandellae.fasta -------------------------------------------------- d.16.e.T.hominis.fasta -------------------------------------------------- d.16.e.V.culicis.fasta -------------------------------------------------- d.16.e.P.hippoglossoideos.fast -------------------------------------------------- d.16.e.Microgemma.sp.fasta -------------------------------------------------- d.16.e.S.lophii.fasta -------------------------------------------------- d.16.e.Pleistophora.sp.LS.fast -------------------------------------------------- d.16.e.D.gammarellum.fasta -------------------------------------------------- d.16.e.M.prosopium.fasta -------------------------------------------------- d.16.e.A.scoticae.fasta -------------------------------------------------- d.16.e.P.whitei.fasta -------------------------------------------------- a.16.c.C.coccineum.fasta GA-UGA-----UCAGUAGCUGGUCUGAGAGGA-----------------U a.16.c.C.ruber.fasta AA-UAA-----UCAGUAGCUGGUCCGAGAGGA-----------------U d.16.c.N.tabacum.fasta GA-UGA-----UCAGUAGCUGGUCCGAGAGGA-----------------U d.16.c.S.oleracea.fasta GA-UGA-----UCAGUAGCUGGUCCGAGAGGA-----------------U d.16.c.Z.mays.fasta GA-UGA-----UCAGUAGCUGGUCCGAGAGGA-----------------U d.16.c.M.polymorpha.fasta GA-CGA-----UCAGUAGCUGGUCUGAGAGGA-----------------U d.16.c.R.communis.fasta GA-UGA-----UCAGUAGCUGGUCCGAGAGGA-----------------U d.16.c.C.vulgaris.fasta AA-UGA-----UCAGUAGCUGGUCUGAGAGGA-----------------U d.16.c.P.wickerhamii.fasta AA-UGA-----UCAGUAGCUGUUCUGAGAGGA-----------------U d.16.c.P.minor.fasta GA-CGA-----UCAGUAGCUGGUCUGAGAGGA-----------------U d.16.c.N.olivacea.fasta GA-CGA-----UCAGUAGCUGGUCUGAGAGGA-----------------U d.16.c.P.parkeae.fasta AA-CGA-----UCAGUAGCUGGUUUGAGAGGA-----------------U d.16.c.C.reinhardtii.fasta CA-CGA-----GCAGUAGCUGGUCUGAGAGGA-----------------U b.16.m.A.castellanii.fasta GA-CGA-----UGCUUAGCUGGUUUGAGAGAA-----------------U d.16.c.P.thurberi.fasta UU-UGA-----UUAGUAGUUGGUUUGGAAGAA-----------------U b.16.m.C.crispus.fasta UA-CGA-----UCUUUAGUUGGUCUAUGAGGA-----------------U d.16.c.T.gondii.fasta GA-AGA-----UUAGUAGCUGCCUUGAGAGGG-----------------G b.16.m.N.crassa.fasta GA-UGA------GAAAAGUUUCAGAGAUAGGUAGUUG----------UUA b.16.m.P.anserina.fasta GA-AGA-----UAAAAAAUCUCGGGGAAAGGUAGUUG----------UUA b.16.m.P.chrysogenum.fasta GA-UAA--------UUUAUCUCGGUGAGUAGUAGG--------------A b.16.m.E.nidulans.fasta GU-UAA------UUAUUAUCACGGUGAGUAGUAGUA-------------A b.16.m.S.cerevisiae.fasta AA-CGA-----UCCAUAAUCGAUAAUGAAAGU----------------UA b.16.m.W.saturnus.m.fasta GA-UAA-----UCUGUAGCAAUUAAUUAACGU----------------UA b.16.m.P.minor.fasta AA-UUU-----UGAAUAAAUUUUCGAAGAUAU----------------UA d.16.c.P.falciparum.fasta UA-UUA-----UCAAAAAUUGGUUUGAAAGAA----------------UG d.16.c.B.bovis.fasta GA-AGA-----UCAAUAACUGGCCUGAGAGGG----------------UU b.16.m.T.pyriformis.fasta UA-AUU-----UGUAUAAUAUUAGGUAAUUAUUU-C------------UA d.16.m.S.sinuspaulianus.fasta UA-UUU-----UUAUUAAAAAAAGGAAAUUUUCUGC------------UA b.16.m.P.tetraurelia.fasta CA-CUU-----GGGCCUCCUGCGCUUAGCUGAUUUG-----------UGA b.16.m.D.discoideum.fasta UG-AGA-----UUCGUAGGUGGUUCGAGAGAA-----------------U d.16.m.P.polycephalum.fasta UU-GAU-----UCUAUAAUGUUGCGUGGGGGAUACA-------------A b.16.m.P.littoralis.fasta UU-UGA-----UGCUUAGUUGGUCUGGGAGGA-----------------C b.16.m.P.wickerhamii.fasta AA-AGA-----UCUUUAGCUGGUUUGAGAGAA-----------------U d.16.c.H.africana.fasta AA-UGA-----UCAGUAAUUGGUCUGAGAGGA-----------------U d.16.c.C.fragile.fasta AA-UGA-----UCAGUAGUUGGUCUGAGAGGA-----------------U d.16.c.C.sertularioides.fasta CA-UAA-----UCAGUAGCUGGUCUAAGAGGA-----------------U d.16.c.C.humicola.fasta CA-CGA-----UCAGUAGCUGGUCUGAGAGGA-----------------U d.16.c.P.uvella.fasta CA-CGA-----UCAGUAUCUGGUUUGAGAGAA-----------------U a.16.c.G.nostochinearum.fasta GA-CGA-----UCAGUAGCUGGUCUGAGAGGA-----------------U a.16.c.G.wittrockiana.fasta GA-UGA-----UCAGUAGCUGGUCUGAGAGGA-----------------U d.16.c.C.paradoxa.fasta GA-CGA-----UCAGUAGCUGGUCUGAGAGGA-----------------U d.16.y.C.paradoxa.fasta GA-CGA-----UCAGUAGCUGGUCUGAGAGGA-----------------U d.16.c.Cryptomonas.sp.fasta GA-CGA-----UCAGUAGCUGGUUUGAGAGGA-----------------C d.16.c.P.palmata.fasta AA-CGA-----UCAGUAGCUGGUUUGAGAGGA-----------------C d.16.c.H.akashiwo.fasta GA-CGA-----UCAGUAACUGAUUUGAGAGGA-----------------U d.16.c.S.pseudocostatum.fasta GA-CGA-----UCAGUAUCUGGUUUGAGAGGA-----------------C d.16.c.P.littoralis.fasta GA-CGA-----UCAGUAGCUGGUUUGAGAGGA-----------------C d.16.c.C.caldarium.fasta AA-CGA-----UCAGUAGCUGGUCUUAGAGGA-----------------U a.16.c.E.huxleyi.fasta CA-CGA-----UCAGUAGCUGGUUUGAGAGAA-----------------C d.16.c.E.gracilis.fasta GA-CGA-----UCAGUAGCUGAUUUGAGAGGA-----------------U d.16.b.Anabaena.sp.fasta GA-CGA-----UCAGUAGCUGGUCUGAGAGGA-----------------U d.16.b.Chlorogloeopsis.PCC7518 GA-CGA-----UCGGUAGCUGGUCUGAGAGGA-----------------C d.16.b.Synechococcus.sp.fasta GA-CGA-----UCAGUAGCUGGUCUGAGAGGA-----------------U d.16.b.Synechocystis.PCC6803.G AA-CGA-----UCAGUAGCUGGUCUGAGAGGA-----------------U d.16.b.O.agardhii.fasta GA-CGA-----UCAGUAGCUGGUCUGAGAGGA-----------------U d.16.b.Pleurocapsa.7516.fasta AG-CGA-----UCGGUAGCUGGUCUGAGAGGA-----------------U d.16.b.M.aeruginosa.fasta GA-CGA-----UCAGUAGCUGGUCUGAGAGGA-----------------U b.16.m.C.reinhardtii.fasta GC-UUA-----UCCUUAGCCUGUCUUAACGGU------------------ d.16.m.C.eugametos.fasta UC-UAA-----AACAUAGUUUAAUUGAUAGAU-----------------U b.16.m.M.senile.fasta GA-AGA-----UGGGUAGCUUAGUUGG----------------------- d.16.b.S.pneumoniae.fasta GA-CGA-----UACNUAGCCGACCUGAGAGGG-----------------U d.16.b.S.pyogenes.fasta GA-CGA-----UACNUAGCCGACCUGAGAGGG-----------------U d.16.b.B.anthracis.fasta AA-CGA-----UGCGUAGCCGACCUGAGAGGG-----------------U d.16.b.B.cereus.1.fasta AA-CGA-----UGCGUAGCCGACCUGAGAGGG-----------------U d.16.b.E.faecalis.fasta CA-CGA-----UGCAUAGCCGACCUGAGAGGG-----------------U d.16.b.E.faecium2.fasta CA-CGA-----UGCAUAGCCGACCUGAGAGGG-----------------U d.16.b.L.monocytogenes.fasta AA-CGA-----UGCAUAGCCGACCUGAGAGGG-----------------U d.16.b.B.subtilis.fasta AA-CGA-----UGCGUAGCCGACCUGAGAGGG-----------------U d.16.b.B.subtilis.GEN.fasta GA-CGA-----UGCGUAGCCGACCUGAGAGGG-----------------U d.16.b.B.halodurans.fasta GA-CGA-----UGCGUAGCCGACCUGAGAGGG-----------------U d.16.b.S.aureus.fasta AA-CGA-----UGCAUAGCCGACCUGAGAGGG-----------------U d.16.b.S.aureus.GEN.fasta AA-CGA-----UGCAUAGCCGACCUGAGAGGG-----------------U d.16.b.L.lactis.GEN.fasta GA-UGA-----UACAUAGCCGACCUGAGAGGG-----------------U d.16.b.S.pyogenes.GEN.fasta GA-CGA-----UACAUAGCCGACCUGAGAGGG-----------------U d.16.b.L.acidophilus.fasta AA-UGA-----UGCAUAGCCGAGUUGAGAGAC-----------------U d.16.b.M.capricolum.fasta GA-UGA-----UACGUAGCCGAACUGAGAGGU-----------------U d.16.b.M.mycoides.fasta GA-UGA-----UACGUAGCCGAACUGAGAGGU-----------------U d.16.b.E.rhusiopathiae.fasta GA-UGA-----UGCGUAGCCGACCUGAGAGGG-----------------U d.16.b.C.innocuum.fasta GA-UGA-----UGCGUAGCCGGCCUGAGAGGG-----------------U d.16.b.M.genitalium.fasta AA-UGA-----CGUGUAGCUAUGCUGAGAAGU-----------------A d.16.b.M.pneumoniae.GEN.fasta AA-UGA-----CGUGUAGCUAUGCUGAGAAGU-----------------A d.16.b.M.pneumoniae.fasta AA-UGA-----CGUGUAGCUAUGCUGAGAAGU-----------------A d.16.b.M.gallisepticum.fasta GA-UGA-----CGUGUAGUUAUGCUGAGAGGU-----------------A d.16.b.U.urealyticum.fasta AA-UGA-----CGCGUAGCUGUACUGAGAGGU-----------------A d.16.b.U.urealyticum.GEN.fasta AA-UGA-----CGCGUAGCUGUACUGAGAGGU-----------------A d.16.b.M.hyopneumoniae.fasta GA-UGA-----UGUUUAGCGGGGCCAAGAGGU-----------------U d.16.b.F.necrophorum.fasta AA-UGA-----UGGGUAGCCGGCCUGAGAGGG-----------------U d.16.b.F.nucleatum.fasta AA-UGA-----UGGGNAGCCGGCCUGAGAGGG-----------------U d.16.b.S.moniliformis.fasta UA-UGA-----UAGGUAGCCGGCCCGAGAGG------------------U d.16.b.C.botulinum.F.fasta AA-CGA-----UGCGUAGCCGACCUGAGAGGG-----------------U d.16.b.C.tetani.fasta GA-CGU-----AGGGUAGCCGACCUGAGAGGG-----------------U d.16.b.C.perfringens.fasta GA-CGA-----UGCGUAGCCGACCUGAGAGGG-----------------U d.16.b.C.difficile.fasta GA-CGA-----UCAGUAGCCGACCUGAGAGGG-----------------U d.16.b.E.brachy.fasta GA-CGA-----UCAGUAGCCGACCUGAGAGGG-----------------U d.16.b.Epulopiscium.sp.fasta GA-CGA-----UCUAUAGCCGGCCUGAGAGGG-----------------U d.16.b.H.chlorum.fasta GA-CGA-----UCGGUAGCCGGCCUGAGAGGG-----------------U b.16.m.G.max.fasta AA-UGA-----UGCUUAGCUGGUCUUUUCGGA-----------------U b.16.m.O.berteriana.fasta AA-UGA-----UGCUUAGCUGGUCUUUUCGGA-----------------U b.16.m.S.cereale.fasta AA-UGA-----UGCUUAGCUGGUCUUUUCGGA-----------------U b.16.m.T.aestivum.fasta AA-UGA-----UGCUUAGCUGGUCUUUUCGGA-----------------U d.16.m.Z.mays.fasta AA-UGA-----UGCUUAGCUGGUCUUUUCGGA-----------------U b.16.m.M.polymorpha.fasta AA-CGA-----CGCUUAGCGGGUCUGUUAGGA-----------------C b.16.m.N.olivacea.fasta GA-UGA-----UCCUUAGCUGGUCUGAGAGGA-----------------C d.16.b.G.liquefaciens.fasta GA-UGA-----UCGAUAGCUGGUCUGAGAGGA-----------------U d.16.b.B.japonicum.fasta GA-CGA-----UCAGUAGCUGGUCUGAGAGGA-----------------U d.16.b.R.acidophilus.fasta GA-CGA-----UCGGNAGCUNGUCUGAGAGGA-----------------U d.16.b.A.caulinodans.fasta GA-CGA-----UCAGUAGCUGGUCUGAGAGGA-----------------U d.16.b.B.quintana.fasta GA-CGA-----UCCAUAGCUGGUCUGAGAGGA-----------------U d.16.b.M.loti.fasta GA-CGA-----UCCAUAGCUGGUCUGAGAGGA-----------------U d.16.b.A.tumefaciens.fasta GA-CGA-----UCCAUAGCUGGUCUGAGAGGA-----------------U d.16.b.B.bacilliformis.fasta GA-CGA-----UCCAUAGCUGGUCUGAGAGGA-----------------U d.16.b.B.henselae.fasta GA-CGA-----UCCAUAGCUGGUCUGAGAGGA-----------------U d.16.b.B.melitensis.fasta GA-CGA-----UCCAUAGCUGGUCUGAGAGGA-----------------U d.16.b.R.orientis.fasta GA-CGA-----UCCAUAGCUGGUCUGAGAGGA-----------------U d.16.b.Methylobacterium.sp.fas GA-CGA-----UCAGUAGCUGGUCUGAGAGGA-----------------U d.16.b.R.bellii.fasta UA-CGA-----UCUGUAGCUGGUCUGAGAGGA-----------------U d.16.b.R.felis.URRWXCal2.fasta GA-CGA-----UCUGUAGCUGGUCUGAGAGGA-----------------U d.16.b.R.prowazekii.fasta GA-CGA-----UCUGUAGCUGGUCUGAGAGGA-----------------U d.16.b.R.prowazekii.GEN.fasta GA-CGA-----UCUGUAGCUGGUCUGAGAGGA-----------------U d.16.b.R.rickettsii.fasta GA-CGA-----UCUGUAGCUGGUCUGAGAGGA-----------------U d.16.b.A.calcoaceticus.fasta GA-CGA-----UCUGUAGCGGGUCUGAGAGGA-----------------U d.16.b.P.pacificensis.fasta GA-CGA-----UCAGUAGCUGGUCUGAGAGGA-----------------U d.16.b.C.marismortui.fasta GA-CGA-----UCCGUAGCUGGUCUGAGAGGA-----------------U d.16.b.H.halodenitrificans.fas CG-CGA-----UCCGUAGCUGGUCUGAGAGGA-----------------U d.16.b.P.aeruginosa.fasta GA-CGA-----UCCGUAACUGGUCUGAGAGGA-----------------C d.16.b.P.aeruginosa.GEN.fasta GA-CGA-----UCCGUAACUGGUCUGAGAGGA-----------------U d.16.b.Pseudomonas.sp.fasta GA-CGA-----UCCGUAACUGGUCUGAGAGGA-----------------U d.16.b.P.putida.fasta GA-CGA-----UCCGUAACUGGUCUGAGAGGA-----------------U d.16.b.C.burnetii.fasta GA-CGA-----UCCGUAGCUGGUCUGAGAGGA-----------------C d.16.b.M.capsulatus.fasta GA-CGA-----UCCGUAGCUGGUCUGAGAGGA-----------------C d.16.b.L.pneumophila.1.fasta GA-CGA-----UCGGNAGCUNGUCUGAGAGGA-----------------U d.16.b.L.pneumophila.2.fasta GA-CGA-----UCGGUAGCUGGUCUGAGAGGA-----------------U d.16.b.A.vinosum.fasta GA-CGA-----UCGGUAGCUNGUCUGAGAGGA-----------------U d.16.b.Beggiatoa.sp.fasta GA-CGA-----UCAGUAGCUGGUCUGAGAGGA-----------------C d.16.b.A.hydrophila.fasta GA-CGA-----UCCCUAGCUGGUCUGAGAGGA-----------------U d.16.b.S.putrefaciens.fasta GA-CGA-----UCCCUAGCUGUUCUGAGAGGA-----------------U d.16.b.C.freundii.fasta GA-CGA-----UCCCUAGCUGGUCUGAGAGGA-----------------U d.16.b.S.dysenteriae.1.fasta GA-CGA-----UCCCUAGCUGGUCUGAGAGGA-----------------U d.16.b.K.pneumoniae.fasta GA-CGA-----UCCCUAGCUGGUCUGAGAGGA-----------------U d.16.b.P.shigelloides.fasta GA-CGA-----UCUCUAACUGGUUUGAGAGAA-----------------U d.16.b.Y.pestis.fasta GA-CGA-----UCCCUAGCUGGUCUGAGAGGA-----------------U d.16.b.Y.pseudotuberculosis.fa GA-CGA-----UCCCUAGCUGGUCUGAGAGGA-----------------U d.16.b.S.dysenteriae.2.fasta GA-CGA-----UCCCUAGCUGGUCUGAGAGGA-----------------U d.16.b.E.coli.0157G.GEN.fasta GA-CGA-----UCCCUAGCUGGUCUGAGAGGA-----------------U d.16.b.E.coli.EDL.GEN.fasta GA-CGA-----UCCCUAGCUGGUCUGAGAGGA-----------------U d.16.b.E.coli.fasta GA-CGA-----UCCCUAGCUGGUCUGAGAGGA-----------------U d.16.b.E.coli.K12.GEN.fasta GA-CGA-----UCCCUAGCUGGUCUGAGAGGA-----------------U h.16.b.E.coli.hlxnum.fasta GA-CGA-----UCCCUAGCUGGUCUGAGAGGA-----------------U m.16.b.E.coli.mhg.fasta GA-CGA-----UCCCUAGCUGGUCUGAGAGGA-----------------U s.16.b.E.coli.schem.fasta GA-CGA-----UCCCUAGCUGGUCUGAGAGGA-----------------U d.16.b.S.typhimurium.fasta GA-CGA-----UCCCUAGCUGGUCUGAGAGGA-----------------U d.16.b.S.marcescens.fasta GA-CGA-----UCCCUAGCUNGUCUGAGAGGA-----------------U d.16.b.E.tarda.fasta GA-CGA-----UCCCUAGCUGGUCUGAGAGGA-----------------U d.16.b.P.vulgaris.fasta AA-CGA-----UCUCUAGCUGGUCUGAGAGGA-----------------U d.16.b.V.cholerae4.fasta GA-CGA-----UCCCUAGCUGGUCUGAGAGGA-----------------U d.16.b.V.cholerae5.fasta GA-CGA-----UCCCUAGCUGGUCUGAGAGGA-----------------U d.16.b.V.cholerae2.fasta GA-CGA-----UCCCUAGCUGGUCUGAGAGGA-----------------U d.16.b.V.cholerae6.fasta GA-CGA-----UCCCUAGCUGGUCUGAGAGGA-----------------U d.16.b.V.cholerae.fasta GA-CGA-----UCCCUAGCUGGUCUGAGAGGA-----------------U d.16.b.V.cholerae.GEN.fasta GA-CGA-----UCCCUAGCUGGUCUGAGAGGA-----------------U d.16.b.V.parahaemolyticus.fast GA-CGA-----UCCCUAGCUUGUCUGAGAGGA-----------------U d.16.b.H.influenzae7.fasta UG-CGA-----UCUCUAGCUGGUCUGAGAGGA-----------------U d.16.b.H.influenzae8.fasta UG-CGA-----UCUCUAGCUGGUCUGAGAGGA-----------------U d.16.b.H.influenzae6.fasta UG-CGA-----UCUCUAGCUGGUCUGAGAGGA-----------------U d.16.b.H.influenz.fasta UG-CGA-----UCUCUAGCUGGUCUGAGAGGA-----------------U d.16.b.H.influenzae.fasta UG-CGA-----UCUCUAGCUGGUCUGAGAGGA-----------------U d.16.b.P.multocida.fasta UN-CGA-----UCUCUAGCUGGUCUGAGAGGA-----------------U d.16.b.P.multocida.GEN.fasta UG-CGA-----UCUCUAGCUGGUCUGAGAGGA-----------------U d.16.b.X.albilineans.fasta GA-CGA-----UCCGUAGCUGGUCUGAGAGGA-----------------U d.16.b.X.campestris.fasta GA-CGA-----UCCGUAGCUGGUCUGAGAGGA-----------------U d.16.b.X.fastidiosa.GEN.fasta GA-CGA-----UCGGUAGCUGGUCUGAGAGGA-----------------U d.16.b.D.nodosus.fasta GA-CGA-----UCCGUAGCUGGUUUGAGAGAA-----------------U d.16.b.F.tularensis.fasta UA-CGA-----UCCAUAGCUGAUUUGAGAGGA-----------------U d.16.b.B.parapertussis.fasta GA-CGA-----UCCGUAGCUGGUUUGAGAGGA-----------------C d.16.b.B.pertussis.fasta GA-CGA-----UCCGUAGCUGGUUUGAGAGGA-----------------C d.16.b.B.bronchiseptica2.fasta GA-CGA-----UCCGUAGCUGGUUUGAGAGGA-----------------C d.16.b.u.proteobacterium.fasta GA-CGA-----UCUGUAGCUGGUCUGAGAGGA-----------------C d.16.b.B.mallei.fasta GA-CGA-----UCAGUAGCUGGUCUGAGAGGA-----------------C d.16.b.Burkholderia.sp.fasta GA-CGA-----UCUGUAGCUGGUCUGAGAGGA-----------------C d.16.b.N.meningitidis.MD58.GEN GA-CGA-----UCAGUAGCGGGUCUGAGAGGA-----------------U d.16.b.N.meningitidis.Z2491.GE GA-CGA-----UCAGUAGCGGGUCUGAGAGGA-----------------U d.16.b.N.gonorrhoeae.fasta GA-CGA-----UCAGUAGCGGGUCUGAGAGGA-----------------U d.16.b.C.testosteroni.fasta UG-CGA-----UCUGUAGCUGGUCUGAGAGGA-----------------C d.16.b.D.desulfuricans.fasta AU-CGA-----UGGGUAGCCGAUUUGAGAGGA-----------------U d.16.b.M.xanthus.fasta AA-CGA-----CGGGUAGCUGGUCUGAGAGGA-----------------C d.16.b.D.thermophilus.fasta UA-CGA-----UGGGUAGCCGGCCUGAGAGGG-----------------U d.16.b.B.burgdorferi.fasta AA-UGA-----UAAGUAACCGGCCUGAGAGGG-----------------U d.16.b.B.burgdorferi.GEN.fasta AA-UGA-----UAAGUAACCGGCCUGAGAGGG-----------------U d.16.b.B.hermsii.fasta UG-UGA-----UAAGUAACCGGCCUGAGAGGG-----------------U d.16.b.S.aurantia.fasta GA-CGA-----UCAGUAGCCGGCCUGAGAGGG-----------------U d.16.b.T.pallidum.A.fasta GU-CGA-----UGGGUAUCCGACCUGAGAGGG-----------------U d.16.b.L.illini.fasta AG-CGA-----UCGGUAGCCGGCCUGAGAGGG-----------------U d.16.b.L.interrogans.fasta GA-CGA-----UCGGUAGCCGGCCUGAGAGGG-----------------U d.16.b.C.trachomatis.GEN.fasta UA-UGA-----CGUCUAGGCGGAUUGAGAGAU-----------------U d.16.b.C.trachomatis.L2.fasta UA-UGA-----CGUCUAGGCGGAUUGAGAGAU-----------------U d.16.b.C.muridarum.fasta UA-UGA-----CGUCUAGGCGGAUUGAGAGAU-----------------U d.16.b.C.pneumoniae.AR39.fasta GA-UGA-----CGUCUAGGCGGAUUGAGAGAU-----------------U d.16.b.C.pneumoniae.fasta GA-UGA-----CGUCUAGGCGGAUUGAGAGAU-----------------U d.16.b.C.pneumoniae.J138.fasta GA-UGA-----CGUCUAGGCGGAUUGAGAGAU-----------------U d.16.b.C.pneumoniae.CWL029.fas GA-UGA-----CGUCUAGGCGGAUUGAGAGAU-----------------U d.16.b.C.psittaci.fasta UU-UGA-----CGUCUAGGCGGAUUGAGAGAU-----------------U d.16.b.D.radiodurans.1.fasta GA-CGA-----CGGAUAGCCGGCCUGAGAGGG-----------------U d.16.b.D.radiodurans.GEN.fasta GA-CGA-----CGGAUAGCCGGCCUGAGAGGG-----------------U d.16.b.B.fragilis.fasta UU-CGA-----UGGAUAGGGGUUCUGAGAGGA-----------------A d.16.b.P.gingivalis.fasta GA-CGA-----UGGGUAGGGGAACUGAGAGGU-----------------U d.16.b.C.vibrioforme.fasta UA-CGA-----CGGAUAGCUGGUCUGAGAGGA-----------------U d.16.b.C.jejuni.fasta UA-UGA-----CGCUUAACUGGUCUGAGAGGA-----------------U d.16.b.C.jejuni.GEN.fasta UA-UGA-----CGCUUAACUGGUCUGAGAGGA-----------------U d.16.b.C.sputorum.fasta UA-UGA-----CGCAUAACUGGUCUGAGAGGA-----------------U d.16.b.H.pylori.26695.GEN.fast UA-UGA-----CGGGUAUCCGGCCUGAGAGGG-----------------U d.16.b.H.pylori.J99.GEN.fasta UA-UGA-----CGGGUAUCCGGCCUGAGAGGG-----------------U d.16.b.H.pylori2.fasta UA-UGA-----CGGGUAUCCGGCCUGAGAGGG-----------------U d.16.b.A.capsulatum.fasta AG-UGA-----UCGGUAUCCGGCCUGAGAGGG-----------------C d.16.b.H.foetida.fasta GA-CGA-----UCAGUAGCCGGCCUGAGAGGG-----------------U d.16.b.A.globiformis.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------U d.16.b.M.luteus.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------U d.16.b.Frankia.sp.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.bottropensis.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.scabiei.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.neyagawaensis.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.diastatochromogenes.f GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.Streptomyces.sp.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.acidiscabies.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.griseus.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.ornatus.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.subrutilus.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.bikiniensis.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.galbus.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.hygroscopicus.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.lincolnensis.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.coelicolor.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.tendae.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.ambofaciens.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.eurythermus.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.nodosus.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.sampsonii.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.glaucescens.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.pseudogriseolus.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.caelestis.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.bluensis.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.espinosus.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.mashuensis.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.rimosus.fasta GAGCGAG----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.limosus.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.odorifer.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.felleus.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.albidoflavus.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.gougerotii.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.rutgersensis.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.intermedius.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.thermodiastaticus.fas GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.thermoviolaceus.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.thermovulgaris.1.fast GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.thermovulgaris.2.fast GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.macrosporus.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.megasporus.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.S.thermolineatus.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.M.tuberculosis.2.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------U d.16.b.M.tuberculosis.3.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------U d.16.b.M.avium.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------U d.16.b.M.leprae.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------U d.16.b.M.leprae.GEN.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------U d.16.b.M.tuberculosis.CDC1551. GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------U d.16.b.M.tuberculosis.GEN.fast GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------U d.16.b.N.asteroides.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------C d.16.b.R.erythropolis.fasta GA-CGA-----CGGGUAGCCGACCUGAGAGGG-----------------U d.16.b.C.diphtheriae.fasta GU-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------U d.16.b.A.israelii.fasta UU-UGA-----CGGGUAGCCGGCCUGAGAGGG-----------------U d.16.b.B.hyodysenteriae.fasta UA-CGA-----UAGGUAGCCGACCUGAGAGGG-----------------U d.16.b.G.subterranea.fasta GA-CGA-----CGGGUAGCCGAUGUGAGAGCA-----------------U d.16.b.P.miotherma.fasta GA-UGA-----CGGAUAACCGGUGUGAGAGCA-----------------U d.16.b.B.andersonii.fasta UA-AGA-----CGGGUAGCCGGCUUGAGAGAG-----------------U d.16.b.H.aurantiacus.fasta GA-UGA-----UGGGUCUCUGGUCUGAGAGGN-----------------C d.16.b.Leptospirillium.sp.fast GA-CGA-----CGGGUAGCUGGUCUGAGAGGA-----------------C d.16.b.A.aeolicus.fasta UA-UGA-----CGGGUAGCCGGCCUGAGAGGG-----------------U d.16.b.A.pyrophilus.fasta UA-UGA-----CGGGUAGCCGGCCUGAGAGGG-----------------U d.16.b.T.maritima.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------U d.16.b.T.maritima.GEN.fasta GA-CGA-----CGGGUAGCCGGCCUGAGAGGG-----------------U n.16.b.T.thermophilus.2.num.fa GA-CGA-----CGGGUAGCCGGUCUGAGAGGA-----------------U s.16.b.T.thermophilus.2.schem. GA-CGA-----CGGGUAGCCGGUCUGAGAGGA-----------------U d.16.b.T.thermophilus.2.fasta GA-CGA-----CGGGUAGCCGGUCUGAGAGGA-----------------U s.16.b.T.thermophilus.1.schem. GA-CGA-----CGGGUAGCCGGUCUGAGAGGA-----------------U n.16.b.T.thermophilus.1.num.fa GA-CGA-----CGGGUAGCCGGUCUGAGAGGA-----------------U d.16.b.T.thermophilus.1.fasta GA-CGA-----CGGGUAGCCGGUCUGAGAGGA-----------------U d.16.b.T.aquaticus.fasta GA-CGA-----CGGGUAGCCGGUCUGAGAGGA-----------------C d.16.b.T.roseum.fasta GA-UGA-----CGGGUAGCUGGUCUGAGAGGA-----------------U d.16.b.P.marina.fasta GA-CGA-----UGGUUAGCGGGCGUGAGAGCG-----------------U d.16.b.P.staleyi.fasta AA-AGA-----UGCGUAUGGGGUGUGAGAGCA-----------------U d.16.b.P.Schlesner.fasta GA-AGA-----CGGGUAGCAGGUGUGAGAGCA-----------------C d.16.b.G.obscuriglobus.1.fasta GA-AGA-----UGUCUAGCGGGUGUGAGAGCA-----------------C d.16.b.I.pallida.fasta GA-CGA-----UGCCUACCGGGCGUGCGAGCG-----------------U d.16.a.P.abyssi.fasta GA-AGA-----UCGGUACGGGCCGUGAGAGCGG----------------- d.16.a.P.horikoshii.fasta GA-AGA-----UCGGUACGGGCCGUGAGAGCGG----------------- d.16.a.P.furiosus.fasta GA-AGA-----UCGGUACGGGCCGUGAGAGCGG----------------- d.16.a.T.celer.fasta GA-AGA-----UCGGUACGGGCCAUGAGAGUGG----------------- d.16.a.A.fulgidus.fasta GA-AGA-----UCCGUACGGGCCAUGAGAGUGG----------------- d.16.a.N.equitans.fasta GA-AGA-----CGGGUAGGGGCCGUGAGAGCGG----------------- d.16.a.A.pernix.K1.fasta UA-CGA-----CGGGUAGGGGCCGUGAGAGCGG----------------- d.16.a.P.occultum.fasta GA-UAA-----CGGGUAGGGGCCGUGAGAGCGG----------------- d.16.a.T.tenax.fasta GA-AGA-----CGGGUAGGGGCGGUGAGAGCCGU---------------- d.16.a.S.acidocaldarius.fasta UA-UAA-----CGGGUAGGGGCCGUGGAAGCGG----------------- d.16.a.S.solfataricus.fasta UA-UAA-----CGGGUAGGGGCCGUGGAAGCGG----------------- d.16.a.S.solfataricus.2.fasta UA-UAA-----CGGGUAGGGGCCGUGAGAGCGG----------------- d.16.a.M.thermautotrophicus.1. GA-UCA-----UCGGUACGGGUUGUGAGAGCAA----------------- d.16.a.M.thermautotrophicus.2. GA-UCA-----UCGGUACGGGUUGUGAGAGCAA----------------- d.16.a.M.formicicum.fasta AG-UAA-----UCUGUACGGGUUGUGAGAGCAA----------------- d.16.a.M.vannielii.fasta UA-CGA-----UCGAUACGGGCCUUGAGAGAGG----------------- d.16.a.H.marismortui.rrnA.fast GA-UAA-----UCGGUACGGGUUGUGAGAGCAA----------------- d.16.a.H.marismortui.rrnB.fast GA-UAA-----UCGGUACAGGUUGUGAGAGCAA----------------- d.16.a.Halobacterium.sp.fasta CA-UAA-----UCGGUACGGGUUGUGAGAGCAA----------------- d.16.a.N.bangense.fasta AA-UAA-----UCGGUACGGGUUGUGAGAGCAA----------------- d.16.a.N.innermongoliae.fasta AG-UAA-----UCGGUACGGGUUGUGAGAGCAA----------------- d.16.a.H.volcanii.fasta GA-UAA-----UCGGUACGGGUUGUGAGAGCAA----------------- d.16.a.M.hungatei.fasta UG-UCA-----UCGGUACGGGUUGUGGGAGCAA----------------- d.16.a.P.torridus.fasta UA-AGA-----CGGGUACGGGCCCUGGGAGGGG----------------- d.16.a.T.acidophilum.fasta UA-AGA-----CGGGUACGGGCCCUGAAAGGGG----------------- a.16.e.G.ardeae.fasta -------------------------------------------------- d.16.e.G.intestinalis.fasta -------------------------------------------------- a.16.e.G.muris.fasta -------------------------------------------------- d.16.e.A.bracteata.fasta -------------------------------------------------- d.16.e.Glomus.sp.W3349.fasta ---------------AUUUCUC----------ACCUUCUGGAGAACCGU- d.16.e.S.cerradensis.fasta ---------------AUUUCU-----------ACCUUCUGGGGAACUAU- a.16.e.G.intraradices.fasta ---------------AUUCCU-----------CCUUCCUUAUGAACCGU- d.16.e.S.culisetae.fasta --------------CAUUCUUGGGCC---UUUAUGUUUCUGGAGAUUAA- a.16.e.P.balamuthi.fasta ACCGU-------UUAACUCCGGGGAAGGCUAUCCACUCUAAUGCCUUAUU d.16.e.A.flavus.fasta GACCU-------UUCCUUCUGGGGAA-----------------CCUCAU- d.16.e.T.caries.fasta ------------UUCUCUCUUGGUGA---------------UCCGGCAU- d.16.e.M.circinelloides.fasta ---------------GCUUUUAUCGAG-----GCUUUUUUUCUGGUUAU- d.16.e.M.racemosus.fasta ---------------GCUUUUAUCGAG-----GCUUUUUUUCUGGUUAU- d.16.e.R.oryzae.fasta ---------------AUUGCUGCCGGA-----GACUCCACGUCCAUUG-- a.16.e.M.edulis.fasta --------------GGUUACUGCCUGC----------------------- a.16.e.P.magellanicus.fasta --------------GGCUACUGCUCG------------------------ b.16.e.E.granulosus.fasta CAUGUUGGUGGGCCGGUCAGUAGUUGGGCUGGUAGGUUGGCGUUUGUUGC d.16.e.D.melanogaster.fasta UAUGUAUGUAAGCGUAUUACCGGUGGAGUUCUUAUAU------------- b.16.e.C.koreana.fasta ----------------UUACUAUU------------U------------- b.16.e.A.australis.fasta -----------------CUGUAGC------------G------------- b.16.e.O.utahensis.fasta UCUGUGGGACGUCCUGCCGGUGGCGGNCACGG------------------ b.16.e.A.salina.fasta --------------GGUCACUGCCU------------------------- d.16.e.M.musculus.fasta -------------GAGUCACCGCCCGU----------------------- d.16.e.R.norvegicus.fasta -------------GAGUCACCGCCCGU----------------------- d.16.e.H.sapiens.fasta -------------GAGCCACCGCCCGU----------------------- d.16.e.O.cuniculus.fasta -------------GAGCCACCGCCCGU----------------------- d.16.e.X.borealis.fasta -------------GAGCUACCGCCUGU----------------------- d.16.e.X.laevis.fasta -------------GAGCUACCGCCUGU----------------------- d.16.e.A.castellanii.fasta CGGUCCG----UCGGUGCCCCACAAAGGGCUA-CUGGCGUGUCAACCGGC d.16.e.B.mandrillaris.fasta -GGUCCG----CCG---------AAAUAG---------GUGAGCACCGUC d.16.e.P.falciparum.A.fasta ------U----AUUUUAGCUUUUGGCUUU--------------------- d.16.e.P.falciparum.S.fasta CAAAUAU----AUUAUAUAUUUUGCUUUG----------UUCAA------ d.16.e.P.vivax.A.fasta CACAUAA----CUGAUACUUCGUAUCGAC----------U---------- d.16.e.P.vivax.O.fasta CACACGA----CUGGUGCUUCGUAUCGGU----------UGGUACUUAGC d.16.e.P.vivax.S.fasta CACAAGG----GGUUGAGCCAAUCACGGU----------UUCGGCUU--- d.16.e.E.histolytica.fasta -------------AAGACUUUAUGUAAG---------------------- d.16.e.I.hoferi.fasta -----------------------GCAAGG--------------------- d.16.e.Dermocystidium.sp.fasta -----------------CGCCGCAAGGUG--------------------- d.16.e.S.destruens.fasta -----------------CGCCGCGAGGUG--------------------- d.16.e.A.unguiculata.fasta ------------UGGUCCACCGCAAGGUG--------------------- d.16.e.D.grandis.fasta ------------UGGUCCGCCUCACGGCG--------------------- d.16.e.A.macrogynus.fasta -----------AUUGUUCCCUUUGCGGUC--------------------- d.16.e.B.emersonii.fasta -----------ACUGAGCC-UUURCGGCC--------------------- d.16.e.C.albicans.fasta ----------------------CAU------------------------- d.16.e.S.cerevisiae.fasta ----------------------CUUGA----------GUCCUUGU----- d.16.e.N.crassa.fasta C--------------------GCAUGC--------CCUUCACUGG----- d.16.e.P.anserina.fasta C--------------------GCAUGC--------CCUUCACUGG----- d.16.e.C.immitis.fasta C--------------------CUAUGG--------CCUUCACUGG----- d.16.e.L.major.fasta AUUCAAA----GAAACAAGAAACACGGGAGUGGUUCCUUUCCUGAUUUAC d.16.e.T.cruzi.fasta AGACAUAUUCAGAAACAAAAAACACGGGAGUGGUACCUUUUCUGAUUAUC d.16.e.T.brucei.fasta ACACUCA----GAUACAAGAAACACGGGAGCGGUUCCUCCUCACUUUCAC d.16.e.P.carinii.fasta C--------------------GGCUGC--------CCUUCGCUGG----- d.16.e.C.neoformans.fasta ---------------------UCACGGAG--------------------- d.16.e.Fungus.sp.QPX.fasta ---------------------UUACGGUG--------------------- d.16.e.U.maydis.fasta ---------------------UAAUUGCA--------------------- d.16.e.M.leidyi.fasta ---------------------CUCUGGAU--------------------- d.16.e.T.cystophora.fasta ---------------------GCAAGGUA--------------------- d.16.e.M.prolifera.fasta ---------------------GCGAGACG--------------------- d.16.e.P.haeckeli.fasta ---------------------GCGAGCUA--------------------- d.16.e.E.rotunda.fasta -----------------CCCUUUCGGGUA--------------------- d.16.e.P.chromatophora.fasta -----------------UCCUUCGGGCCG--------------------- d.16.e.A.majus.fasta ---------------------UCU-GGU---------------------- d.16.e.S.indicum.fasta ---------------------UCU-GGU---------------------- d.16.e.D.grandiflora.fasta ---------------------UUUAGGU---------------------- d.16.e.Pla.lanceolata.fasta ---------------------UUCUGGU---------------------- d.16.e.N.tabacum.fasta ---------------------UUA-GGU---------------------- d.16.e.A.thaliana.fasta ---------------------UU-UGGU---------------------- d.16.e.S.alba.fasta ---------------------UU-UGGU---------------------- d.16.e.S.tuberosum.fasta ---------------------CU-AGGU---------------------- d.16.e.F.x.ananassa.fasta ---------------------UUAUGGU---------------------- d.16.e.G.max.fasta ---------------------UC-CGGU---------------------- d.16.e.O.sativa.fasta ---------------------UCACGGC---------------------- d.16.e.Z.mays.fasta ---------------------GUACGGG---------------------- d.16.e.A.verticilliflorum.fast ---------------------UUUGGGU---------------------- d.16.e.G.spirotaenia.fasta ---------------------CUUCGGU---------------------- d.16.e.Staurastrum.sp.M752.fas ---------------------UACCGGU---------------------- d.16.e.C.paradoxa.fasta ---------------------AAUAGGU---------------------- d.16.e.G.nostochinearum.fasta ---------------------UAUGGGU---------------------- d.16.e.G.wittrockiana.fasta ---------------------UAUGGGU---------------------- d.16.e.C.luteoviridis.fasta ---------------------UCUCGGU---------------------- d.16.e.O.longa.fasta -------------------CCGCUG-UU---------------------- d.16.e.P.weissei.fasta -------------------CCGCUGAUU---------------------- d.16.e.C.citrina.fasta -------------------GAGCUCGUU---------------------- d.16.e.G.steinii.fasta -------------------CGUCUUGUU---------------------- d.16.e.Ple.lanceolata.fasta -------------------CGUCUUGUU---------------------- d.16.e.O.quadricornutus.fasta -------------------CGUCUUGUU---------------------- d.16.e.S.lemnae.fasta -------------------CCGAU-GUU---------------------- d.16.e.S.mytilus.fasta -------------------CCGAUUGUU---------------------- d.16.e.E.mobilis.fasta -------------------CCGCUGAU----------------------- d.16.e.O.granulifera.1.fasta -------------------CCGCUCGUUU--------------------- d.16.e.O.granulifera.2.fasta -------------------CCGCAUGUUU--------------------- d.16.e.U.gallina.fasta -------------------CCGCUCGUUC--------------------- d.16.e.U.pisces.fasta -------------------CCGCAUGUU---------------------- d.16.e.P.lepisma.fasta -------------------CCGCAUGUU---------------------- d.16.e.U.grandis.fasta -------------------CCGCUGAU----------------------- d.16.e.B.coli.fasta -------------------------------------------------- d.16.e.E.aediculatus.fasta -------------------GGUGGCUAUG--------------------- d.16.e.T.thermophila.fasta -------------------CGAUUCGU----------------------- d.16.e.Bangia.sp.NWT.fasta ---------------------GCCGGGC---------------------- d.16.e.Bangia.sp.VIS7.fasta ---------------------GACCGUC---------------------- d.16.e.E.carnea.fasta ---------------------ACUCGG----------------------- d.16.e.R.parvula.fasta ---------------------ACUCGG----------------------- d.16.e.C.coeruleus.fasta ---------------------ACGCGG----------------------- d.16.e.P.aerugineum.1.fasta ---------------------GCUGGGG---------------------- d.16.e.R.maculata.fasta ---------------------AG--------------------------- d.16.e.A.ambigua.fasta -----------------CUUCACUUGG----------------------- d.16.e.A.baicalensis.fasta -----------------CUUCACUUGG----------------------- d.16.e.S.nipponica.fasta -----------------CUUCACUUGG----------------------- d.16.e.C.radiatus.fasta -----------------UGAC-CUUAU----------------------- d.16.e.C.criophilum.fasta -----------------UGCU-CUUUG----------------------- d.16.e.A.capitellata.fasta -----------------GA----UUU------------------------ d.16.e.S.pupula.fasta -----------------GAAAUGUUU------------------------ d.16.e.T.antarctica.fasta -----------------UUGCUCUUUGAG--------------------- d.16.e.E.triangulatum.fasta -----------------C-----UUU------------------------ d.16.e.A.bongranii.fasta -----------------GGCACGUGC------------------------ d.16.e.Pseudogomphonema.sp.fas -----------------GGGCACUUUGUG--------------------- d.16.e.D.tenue.fasta -----------------CGACACA--GUG--------------------- d.16.e.G.marina.fasta -----------------CAGCACA--GUG--------------------- d.16.e.Thalassionema.sp.fasta -----------------CGACGCAUCAUG--------------------- d.16.e.R.belgicae.fasta -----------------UCACU---------------------------- d.16.e.Undatella.sp.fasta -----------------UUCACUUUUGU---------------------- d.16.e.C.belgica.fasta -----------------CGACGCUUAG----------------------- d.16.e.O.sinensis.fasta -----------------CGACGCUC------------------------- d.16.e.D.brightwellii.fasta -----------------UGACACUUUG----------------------- d.16.e.L.undulatum.fasta -----------------CGACACUUUG----------------------- d.16.e.T.eccentrica.fasta -----------------ACGCACUCUG----------------------- d.16.e.T.pseudonana.fasta -----------------UCACACUCAG----------------------- d.16.e.S.costatum.fasta -----------------ACACACACUG----------------------- d.16.e.P.laevis.fasta -----------------CUGUGCCUAG----------------------- d.16.e.L.borealis.fasta -----------------CCGUGCUUUGU---------------------- d.16.e.P.pseudodenticulata.fas -----------------UCACGCAUUGU---------------------- d.16.e.B.mediterranea.fasta ------------------GUCUCAAUGA---------------------- d.16.e.B.pacifica.fasta ------------------GGCCGUAAAG---------------------- d.16.e.L.minuta.fasta -----------------GAACUUGAUUG---------------------- d.16.e.L.danicus.fasta -----------------AUUGGUUAACUC--------------------- d.16.e.Chaetoceros.sp.fasta -----------------CGACCUUUGG----------------------- d.16.e.A.invadans.fasta -----------------ACG------AAA--------------------- d.16.e.L.giganteum.fasta -----------------GCUUCCUCUGGA--------------------- d.16.e.M.varians.fasta -----------------CCACAUUGUGA---------------------- d.16.e.B.hominis.fasta -----------------UGAGACUUCG----------------------- d.16.e.P.marinus.fasta ------------ACCGAUCCACCUUUCCUA-------------------- d.16.e.T.gondii.fasta ------------GCCAGUCCGCCCU------------------------- d.16.e.A.fundyense.fasta ------------GCUGGUCCGCCCU------------------------- d.16.e.B.bigemina.fasta ---------------------GUUU------------------------- d.16.e.B.canis.fasta ---------------------GGUU------------------------- d.16.e.Babesia.sp.OKD.fasta -------------------CGACUC------------------------- d.16.e.B.microti.1.fasta ------------UAAA-U-UCGCUU------------------------- d.16.e.B.microti.2.fasta ------------UAAU-C-UCGCUU------------------------- d.16.e.B.microti.3.fasta ------------UAAU-C-UCGCUU------------------------- d.16.e.B.microti.4.fasta ------------UAAU-C-UCGCUU------------------------- d.16.e.B.microti.5.fasta ------------UAAU-C-UCGCUU------------------------- d.16.e.B.rodhaini.fasta ------------UUAUGC-UCGCUU------------------------- d.16.e.B.gibsoni.fasta ------------GACUUCGUUCCCU------------------------- d.16.e.B.bovis.fasta ---------------------GCUUG------------------------ d.16.e.J.libera.fasta --------UGGCACCGGUGAUGCAUUUG---------------------- d.16.e.R.americana.fasta ---------GGCGCCGACCAACUCUCUGAG-------------------- d.16.e.B.ostreae.fasta ------------------GUCGUCCGCGACCG------------------ d.16.e.A.dasyae.fasta ------------------UGCGUGCGGCGCU------------------- d.16.e.A.hermannii.fasta ------------------UGCGUGCGGCGCU------------------- d.16.e.N.helminthoides.fasta ------------------UGCAUGUGGCGCU------------------- d.16.e.B.gelatinosum.fasta ------------------UGCGUGUGGCGC-------------------- d.16.e.N.tortuosa.fasta ------------------UGCGUGUGGCGAU------------------- d.16.e.T.hispida.fasta ------------------UGCGUGGGGCGUU-----------------UU d.16.e.T.violacea.4.fasta ------------------UGCGUGGGGCGUU-----------------UU d.16.e.T.violacea.1.fasta ------------------UGCGUGCGGCGUUAAAG---AAAAAAUUUAUU d.16.e.T.violacea.2.fasta ------------------UGCGU-CGGCGUUAAAGGA-AAAAAAUUUUUU d.16.e.N.shawii.fasta ------------------UGCGUGUGGCGAU------------------- d.16.e.B.investiens.fasta ------------------UGCGUGCGGCGCU------------------- d.16.e.B.macrosporum.fasta ------------------UGCGUGCGGCCAC------------------- d.16.e.A.plicata.fasta -------------------AUCUUUGUCGGU------------------- d.16.e.C.officinalis.fasta ------------------UGCGCGCACUUUG------------------- d.16.e.R.carriebowensis.fasta ------------------AGCGUACGCCU-G------------------- d.16.e.B.hamifera.fasta ------------------CGGUUCUGCGGC-------------------- d.16.e.G.vagum.fasta ------------------CGGUUCUGUAUC-------------------- d.16.e.C.crispus.fasta ------------------CGGAUCUGGAGUU------------------- d.16.e.H.plana.fasta ------------------CGAUCUUAGGUU-------------------- d.16.e.R.leptophylla.fasta ------------------UGUUGGCAGGUC-------------------- d.16.e.P.pulvinata.fasta ------------------CGAUCUCAUGUC-------------------- d.16.e.C.rubrum.fasta ------------------CGAUCUUGUUGGC------------------- d.16.e.Gracilariopsis.sp.fasta ------------------CGCGCUCAGGUU-------------------- d.16.e.B.moritziana.fasta ------------------GAUUGAUGUAGC-------------------- d.16.e.H.rubra.fasta -------------------GCCUGUGGUGCC------------------- d.16.e.D.grisea.fasta ------------------UGUGCGAUGGACU------------------- d.16.e.N.fowleri.fasta GAUGGUUGGAGGGAGUUUAUAACUCCCUCUUGCCUACUCC---------- d.16.e.N.gruberi.fasta GACGGUUGGCGAGAGUUUAUCACUCUUGUUUGCCUACUU----------- a.16.e.Hexamita.sp.fasta -------------------------------------------------- d.16.e.T.foetus.fasta -------------------------------------------------- d.16.e.A.khaliulini.fasta -------------------------------------------------- d.16.e.E.aedis.fasta -------------------------------------------------- d.16.e.A.connecticus.fasta -------------------------------------------------- d.16.e.I.barri.fasta -------------------------------------------------- d.16.e.A.ferocious.fasta -------------------------------------------------- d.16.e.Amblyospora.sp.fasta -------------------------------------------------- d.16.e.C.lunata.fasta -------------------------------------------------- d.16.e.P.anophelis.fasta -------------------------------------------------- d.16.e.Hazardia.sp.fasta -------------------------------------------------- d.16.e.H.milleri.fasta -------------------------------------------------- d.16.e.P.simulii.fasta -------------------------------------------------- d.16.e.W.palustris.fasta -------------------------------------------------- d.16.e.Nosema.sp.03.fasta -------------------------------------------------- d.16.e.Nosema.sp.05.fasta -------------------------------------------------- d.16.e.Endoreticulatus.sp.fast -------------------------------------------------- d.16.e.Nosema.sp.02.fasta -------------------------------------------------- d.16.e.N.spodopterae.fasta -------------------------------------------------- d.16.e.N.trichoplusiae.fasta -------------------------------------------------- d.16.e.N.bombycis.27.fasta -------------------------------------------------- d.16.e.N.bombycis.02.fasta -------------------------------------------------- d.16.e.V.imperfecta.fasta -------------------------------------------------- d.16.e.N.furnacalis.fasta -------------------------------------------------- d.16.e.Microsporidium57864.fas -------------------------------------------------- d.16.e.Vairimorpha.sp.C21.fast -------------------------------------------------- d.16.e.N.oulemae.fasta -------------------------------------------------- d.16.e.N.necatrix.fasta -------------------------------------------------- d.16.e.V.necatrix.fasta -------------------------------------------------- d.16.e.N.apis.fasta -------------------------------------------------- d.16.e.O.occidentalis.fasta -------------------------------------------------- d.16.e.Microsporidium.sp.DP119 -------------------------------------------------- d.16.e.V.corneae.fasta -------------------------------------------------- d.16.e.A.michaelis.fasta -------------------------------------------------- d.16.e.T.contejeani.fasta -------------------------------------------------- d.16.e.E.hellem.fasta -------------------------------------------------- d.16.e.Encephalitozoon.sp.fast -------------------------------------------------- d.16.e.E.cuniculi.fasta -------------------------------------------------- d.16.e.O.colligata.fasta -------------------------------------------------- d.16.e.E.salmonis.fasta -------------------------------------------------- d.16.e.N.salmonis.fasta -------------------------------------------------- d.16.e.Enterocytozoonidae.sp.f -------------------------------------------------- d.16.e.E.bieneusi.fasta -------------------------------------------------- d.16.e.B.algerae.fasta -------------------------------------------------- d.16.e.T.solenopsae.fasta -------------------------------------------------- d.16.e.V.acridophagus.fasta -------------------------------------------------- d.16.e.Bacillidium.sp.fasta -------------------------------------------------- d.16.e.P.cristatellae.fasta -------------------------------------------------- d.16.e.Pleistophora.sp.fasta -------------------------------------------------- d.16.e.O.operophterae.fasta -------------------------------------------------- d.16.e.F.magnivora.fasta -------------------------------------------------- d.16.e.G.atherinae.fasta -------------------------------------------------- d.16.e.Ichthyosporidium.sp.fas -------------------------------------------------- d.16.e.L.acerinae.fasta -------------------------------------------------- d.16.e.H.anguillarum.fasta -------------------------------------------------- d.16.e.P.mirandellae.fasta -------------------------------------------------- d.16.e.T.hominis.fasta -------------------------------------------------- d.16.e.V.culicis.fasta -------------------------------------------------- d.16.e.P.hippoglossoideos.fast -------------------------------------------------- d.16.e.Microgemma.sp.fasta -------------------------------------------------- d.16.e.S.lophii.fasta -------------------------------------------------- d.16.e.Pleistophora.sp.LS.fast -------------------------------------------------- d.16.e.D.gammarellum.fasta -------------------------------------------------- d.16.e.M.prosopium.fasta -------------------------------------------------- d.16.e.A.scoticae.fasta -------------------------------------------------- d.16.e.P.whitei.fasta -------------------------------------------------- a.16.c.C.coccineum.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- a.16.c.C.ruber.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCUUACGGGAG-- d.16.c.N.tabacum.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.c.S.oleracea.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.c.Z.mays.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.c.M.polymorpha.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCUUACGGGAG-- d.16.c.R.communis.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.c.C.vulgaris.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.c.P.wickerhamii.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.c.P.minor.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.c.N.olivacea.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.c.P.parkeae.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.c.C.reinhardtii.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- b.16.m.A.castellanii.fasta GAUCAGCCACAUUGGGACUGAAA-ACGGCCCA----AGUCUUCUAAAAGG d.16.c.P.thurberi.fasta GAUCAGCCACACUAGGACUGAAACAAGGCCUAGACUAAUUUUUUAAUUAG b.16.m.C.crispus.fasta GAACAGCCACAUUGGAACUGAGAUACGGUCCA----AACUUAAUUAAAAG d.16.c.T.gondii.fasta AAACAGCCACAUAGAGAUUGAAAUACAGCUCU----AACUCCUAAGGGGG b.16.m.N.crassa.fasta AGGUCAUGGCUUAACAAGCCAAUAAUUCUCUUAG--UCGAAGCUGA-A-A b.16.m.P.anserina.fasta AGGUAAUUGCUUAACAAGCCUAGUAUUCUCUUAG--UCGAAGCUGAGA-A b.16.m.P.chrysogenum.fasta AGGUAAUGACUUUUCUAGCAAUAAAC---CGUAG--UCGUAACUGG---A b.16.m.E.nidulans.fasta AGGUAAUGACUUUACUAGCUAAAUC----CGUAG--UCGUGACUGA---G b.16.m.S.cerevisiae.fasta GAACGAUCACGUUGACUCUGAAAUAUAGUCAAUA--UCUAUAA-GAUA-- b.16.m.W.saturnus.m.fasta UAAUUGUCACGUCGAUUAUCAAAUACAAUCGAUA--UCUAUAU-GAUA-- b.16.m.P.minor.fasta AGGUGUUAACCCACAUCAGAAUUUUCUGAGUUUA--UAUUUAU-AAUC-- d.16.c.P.falciparum.fasta UA-CAAUCACAUUAGGAUUGAAAUAAAGCCUAAA--UUUUUAU-AAAAAA d.16.c.B.bovis.fasta UA-CAGUCACAUCAGAAUUGAGAUAAAAUCUGAA--UUUCUAUAGAGAGA b.16.m.T.pyriformis.fasta AAA----UUGUUUAAUAAAUAAAUAUAUUUAUUU--UUAGUAAAA----- d.16.m.S.sinuspaulianus.fasta UAGGAUUCUAUUUAUUUUGAUUAGGUAGUUGGUA--UGGGUAAAGGCCUA b.16.m.P.tetraurelia.fasta GAAGAAUCAGCCACAUACAGGUAUGUGAAAGACC--UUAUCUCGGA---- b.16.m.D.discoideum.fasta GAUCAUCCACAUUGGUAUUGAAAGAACGACCAAA--CUCUGAAGAG---- d.16.m.P.polycephalum.fasta AAAACAUUAUUUUAUACUUAUUGUUUUAUAAACA--AAUUUAUAUA---- b.16.m.P.littoralis.fasta GAUCAAUCACACUGGGACUGAGACAAGGCCCAGG--UUUCAUUUGAAG-- b.16.m.P.wickerhamii.fasta GAUCAGCCACAUUGGGACUGAGACACGGCCCAAA--UACUUUAGAGUA-- d.16.c.H.africana.fasta GAUCAAUCACACUGGAACUGAGAUAAGGUCCAGA--CUCCUACGGGUG-- d.16.c.C.fragile.fasta GAUCAACCACACUGGGACUGAGAUACGGCCCAGA--CCUUUACGGAGG-- d.16.c.C.sertularioides.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CCUCUACGGAGG-- d.16.c.C.humicola.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.c.P.uvella.fasta GACCAGACACACUGGGACUGAGAUACGGCCCAGA--CUCCUACGGGAG-- a.16.c.G.nostochinearum.fasta GACCAGCCACACUGGGACUGAGAUACGGCCCAGA--CUCCUACGGGAG-- a.16.c.G.wittrockiana.fasta GAUCAGCCACACUGGGACUGAGAUACGGCCCAGA--CUCCUACGGGAG-- d.16.c.C.paradoxa.fasta GAUCAGCCACACUGGGACUGAGAUACGGCCCAGA--CUCCUACGGGAG-- d.16.y.C.paradoxa.fasta GAUCAGCCACACUGGGACUGAGAUACGGCCCAGA--CUCCUACGGGAG-- d.16.c.Cryptomonas.sp.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.c.P.palmata.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUUCUACGGGAG-- d.16.c.H.akashiwo.fasta GAUCAGUCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.c.S.pseudocostatum.fasta GAUCAGACACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.c.P.littoralis.fasta GACCAGUCACACUGGA-CUGAGACACGGUCCAGA--CUACUACGGGAG-- d.16.c.C.caldarium.fasta GAUCAGCCACACUGGAACUGAGAUACGGUCCAGA--CUCCUACGGGAG-- a.16.c.E.huxleyi.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUCCGGGAG-- d.16.c.E.gracilis.fasta GAUCAGCCACACUGGGAUUGAGA-ACGGAACAGA--CUUCUACGGAAG-- d.16.b.Anabaena.sp.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.Chlorogloeopsis.PCC7518 GAACAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.Synechococcus.sp.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.Synechocystis.PCC6803.G GAGCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.O.agardhii.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.Pleurocapsa.7516.fasta GAGCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.M.aeruginosa.fasta GAGCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- b.16.m.C.reinhardtii.fasta ACUAGGCCACGGUGGCACUGAAAAG-GGGCCACG--GUUCUUAUGAAC-- d.16.m.C.eugametos.fasta AUUAAAUCACAAUGGCACUGAAAAAAGGGCCAUA--CAAUAAAUAUUG-- b.16.m.M.senile.fasta ----AGCCACACUUUCACUGAAACAAGGGG-AAG--GCUCACAUAGAG-- d.16.b.S.pneumoniae.fasta NAUCGGCCACACUGGGACUNAGACNCGGCCNNGN--CUCCUACGGGAG-- d.16.b.S.pyogenes.fasta GAUCGGCCACACUGGGACUGAGACACGGCCCNGA--CUCCUACGGGAG-- d.16.b.B.anthracis.fasta GAUCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.B.cereus.1.fasta GAUCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.E.faecalis.fasta GAUCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.E.faecium2.fasta GAUCGGCCACAUUGGGACUGAGACACGGCCCAAA--CUCCUACGGGAG-- d.16.b.L.monocytogenes.fasta NAUCGGCCACACUGGGACUGAGACACGGCCNNGA--CUCCUACGGGAG-- d.16.b.B.subtilis.fasta GAUCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.B.subtilis.GEN.fasta GAUCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.B.halodurans.fasta GAUCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.aureus.fasta GAUCGGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.S.aureus.GEN.fasta GAUCGGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.L.lactis.GEN.fasta GAUCGGCCACAUUGGGACUGAGACACGGCCCAAA--CUCCUACGGGAG-- d.16.b.S.pyogenes.GEN.fasta GAUCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.L.acidophilus.fasta GAUCGGCCACAUUGGGACUGAGACACGGCCCAAA--CUCCUACGGGAG-- d.16.b.M.capricolum.fasta GAUCGGCCACAUUGGGACUGAAAUACGGCCCAGA--CUCCUACGGGAG-- d.16.b.M.mycoides.fasta GAUCGGCCACAUUGGGACUGAGAUACGGCCCAGA--CUNNUACGGGAG-- d.16.b.E.rhusiopathiae.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.C.innocuum.fasta AAACGGCCACAUUGGGACUGAGACACGGCCCAAA--CUCCUACGGGAG-- d.16.b.M.genitalium.fasta GAAUAGCCACAAUGGGACUGAGACACGGCCCAUA--CUCCUACGGGAG-- d.16.b.M.pneumoniae.GEN.fasta GAAUAGCCACAAUGGGACUGAGACACGGCCCAUA--CUCCUACGGGAG-- d.16.b.M.pneumoniae.fasta GAAUAGCCACAAUGGGACUGAGACACGGCCCAUA--CUCCUACGGGAG-- d.16.b.M.gallisepticum.fasta GAAUAACCACAAUGGGACUGAGACACGGCCCAUA--CUCCUACGGGAG-- d.16.b.U.urealyticum.fasta GAACAGCCACAAUGGGACUGAGACACGGCCCAUA--CUCCUACGGGAG-- d.16.b.U.urealyticum.GEN.fasta GAACAGCCACAAUGGGACUGAGACACGGCCCAUA--CUCCUACGGGAG-- d.16.b.M.hyopneumoniae.fasta GUACCGCCACACUGGGAUUGAGAUACGGCCCAGA--CUCCUACGGGAG-- d.16.b.F.necrophorum.fasta GAACGGCCACAAGGGGACUGAGACACGGCCCUUA--CUCCUACGGGAG-- d.16.b.F.nucleatum.fasta GAACGGCCACAAGGGGACUGAGACACGGCCCUUA--CUCCUACGGGAG-- d.16.b.S.moniliformis.fasta GAACGGCCACAAGGGGACUGAGAUACGGCCCUUA--CUCCUACGGGAG-- d.16.b.C.botulinum.F.fasta GAUCGGCCACAUUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.C.tetani.fasta GAUCGGCCACAUUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.C.perfringens.fasta GAUCGGCCACAUUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.C.difficile.fasta GAUCGGCCACAUUGGAACUGAGACACGGUCCAAA--CUCCUACGGGAG-- d.16.b.E.brachy.fasta GAACGGCCACAUUGGAACUGAGACACGGUCCAAA--CUCCUACGGGAG-- d.16.b.Epulopiscium.sp.fasta GAACGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.H.chlorum.fasta GAACGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- b.16.m.G.max.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCGGA--CUCCCACGGGGG-- b.16.m.O.berteriana.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCGGA--CUCCCACGGGGG-- b.16.m.S.cereale.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCGGA--CUCCCACGGGGG-- b.16.m.T.aestivum.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCGGA--CUCCCACGGGGG-- d.16.m.Z.mays.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCGGA--CUCCCACGGGGG-- b.16.m.M.polymorpha.fasta GAUCCGCCGCACUGGGACUGAGACACGGCCCAGA--CUCCCACGGGAG-- b.16.m.N.olivacea.fasta GAUCAGCCACACUGGGACUGAGA-AGGGCCCAGA--CUUCUACGGAAG-- d.16.b.G.liquefaciens.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.B.japonicum.fasta GAUCAGCCACAUUGGGACUGAGACACGGCCCAAA--CUCCUACGGGAG-- d.16.b.R.acidophilus.fasta GAUCAGCCACAUUGGGACUGAGACACGGCCCAAA--CUCCUACGGGAG-- d.16.b.A.caulinodans.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.B.quintana.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.M.loti.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.A.tumefaciens.fasta GAUCAGCCACAUUGGGACUGAGACACGGCCCAAA--CUCCUACGGGAG-- d.16.b.B.bacilliformis.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUC-UACGGGAG-- d.16.b.B.henselae.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.B.melitensis.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.R.orientis.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.Methylobacterium.sp.fas GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.R.bellii.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.R.felis.URRWXCal2.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.R.prowazekii.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.R.prowazekii.GEN.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.R.rickettsii.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.A.calcoaceticus.fasta GAUCCGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.P.pacificensis.fasta GAUCAGCCACACCGGGACUGAGACACGGCCCGGA--CUCCUACGGGAG-- d.16.b.C.marismortui.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.H.halodenitrificans.fas GAUCAGCCACACCGGGACUGAGACACGGCCCGGA--CUCCUACGGGAG-- d.16.b.P.aeruginosa.fasta GAUCAGUCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.P.aeruginosa.GEN.fasta GAUCAGUCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.Pseudomonas.sp.fasta GAUCAGUCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.P.putida.fasta GAUCAGUCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.C.burnetii.fasta GAUCAGCCACACUGGGACUGAGACNCGGCCCAGA--CUCCUACGGGAG-- d.16.b.M.capsulatus.fasta GAUCAGCCACACUGGGACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.L.pneumophila.1.fasta GACCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.L.pneumophila.2.fasta GACCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.A.vinosum.fasta GACCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.Beggiatoa.sp.fasta GACCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.A.hydrophila.fasta GAUCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.S.putrefaciens.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.C.freundii.fasta GACCAGCCACACUGGAACUGAGACACGGUCNAGA--CUCCUACGGGAG-- d.16.b.S.dysenteriae.1.fasta GACCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.K.pneumoniae.fasta GACCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.P.shigelloides.fasta GACCAGUCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.Y.pestis.fasta GACCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.Y.pseudotuberculosis.fa GACCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.S.dysenteriae.2.fasta GACCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.E.coli.0157G.GEN.fasta GACCAGCCACACUGGAACUGAGACACGGUCCAGA--YUCCUACGGGAG-- d.16.b.E.coli.EDL.GEN.fasta GACCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.E.coli.fasta GACCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.E.coli.K12.GEN.fasta GACCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- h.16.b.E.coli.hlxnum.fasta GACCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- m.16.b.E.coli.mhg.fasta GACCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- s.16.b.E.coli.schem.fasta GACCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.S.typhimurium.fasta GACCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.S.marcescens.fasta GACCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.E.tarda.fasta GACCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.P.vulgaris.fasta GAUCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.V.cholerae4.fasta GAUCAGCCACACUGGAACUGAGACACGGUCCAGA--CUNCUACGGGAG-- d.16.b.V.cholerae5.fasta GAUCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.V.cholerae2.fasta GAUCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.V.cholerae6.fasta GAUCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.V.cholerae.fasta GAUCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.V.cholerae.GEN.fasta GAUCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.V.parahaemolyticus.fast GAUCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.H.influenzae7.fasta GACCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.H.influenzae8.fasta GACCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.H.influenzae6.fasta GGCCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.H.influenz.fasta GACCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.H.influenzae.fasta GACCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.P.multocida.fasta GACCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.P.multocida.GEN.fasta GACCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.X.albilineans.fasta GAUCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.X.campestris.fasta GAUCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.X.fastidiosa.GEN.fasta GAUCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.D.nodosus.fasta GAUCAGCCACAUCGGGACUGAGACACGGCCCNAA--CUCCUACGGGAG-- d.16.b.F.tularensis.fasta GAUCAGCCACAUUGGGACUGAGACACGGCCCAAA--CUCCUACGGGAG-- d.16.b.B.parapertussis.fasta GACCAGCCACACUGGGACUGAGACACGGCCCAGN--CUCCUACGGGAG-- d.16.b.B.pertussis.fasta GACCAGCCACACUGGGACUGAGACACGGCCCAGN--CUCCUACGGGAG-- d.16.b.B.bronchiseptica2.fasta GACCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.u.proteobacterium.fasta GACCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.B.mallei.fasta GACCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.Burkholderia.sp.fasta GACCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.N.meningitidis.MD58.GEN GAUCCGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.N.meningitidis.Z2491.GE GAUCCGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.N.gonorrhoeae.fasta GAUCCGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.C.testosteroni.fasta GACCAGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.D.desulfuricans.fasta GAUCGGCCACACUGGAACUGAAACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.M.xanthus.fasta GAUCAGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.D.thermophilus.fasta GGUCGGCCACAUUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.B.burgdorferi.fasta GAACGGUCACACUGGAACUGAGAUACGGUCCAGA--CUCCUACGGGAG-- d.16.b.B.burgdorferi.GEN.fasta GAACGGUCACACUGGAACUGAGAUACGGUCCAGA--CUCCUACGGGAG-- d.16.b.B.hermsii.fasta GAACGGUCACACUGGAACUGAGAUACGGUCCAGA--CUCCUACGGGAG-- d.16.b.S.aurantia.fasta GUACGGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.T.pallidum.A.fasta GACCGGACACACUGGGACUGAGAUACGGCCCAGA--CUCCUACGGGAG-- d.16.b.L.illini.fasta GAACGGCCACACUGGAACUGGGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.L.interrogans.fasta GUUCGGCCACAAUGGAACUGAGACACGGUCCAUA--CUCCUACGGGAG-- d.16.b.C.trachomatis.GEN.fasta GGCCGCCAACACUGGGACUGAGACACUGCCCAGA--CUCCUACGGGAG-- d.16.b.C.trachomatis.L2.fasta GGCCGCCAACACUGGGACUGAGACACUGCCCAGA--CUCCUACGGGAG-- d.16.b.C.muridarum.fasta GGCCGCCAACACUGGGACUGAGACACUGCCCAGA--CUCCUACGGGAG-- d.16.b.C.pneumoniae.AR39.fasta GACCGCCAACACUGGGACUGAGACACUGCCCAGA--CUCCUACGGGAG-- d.16.b.C.pneumoniae.fasta GACCGCCAACACUGGGACUGAGACACUGCCCAGA--CUCCUACGGGAG-- d.16.b.C.pneumoniae.J138.fasta GACCGCCAACACUGGGACUGAGACACUGCCCAGA--CUCCUACGGGAG-- d.16.b.C.pneumoniae.CWL029.fas GACCGCCAACACUGGGACUGAGACACUGCCCAGA--CUCCUACGGGAG-- d.16.b.C.psittaci.fasta GACCGCCAACACUGGGACUGAGACACUGCCCAGA--CUUCUACGGAAG-- d.16.b.D.radiodurans.1.fasta GGCCGGCCACAGGGGCACUGAGACACGGGUCCCA--CUCCUACGGGAG-- d.16.b.D.radiodurans.GEN.fasta GGCCGGCCACAGGGGCACUGAGACACGGGUCCCA--CUCCUACGGGAG-- d.16.b.B.fragilis.fasta GGUCCCCCACAUUGGAACUGAGACACGGUCCAAA--CUCCUACGGGAG-- d.16.b.P.gingivalis.fasta UAUCCCCCACACUGGUACUGAGACACGGACCAGA--CUCCUACGGGAG-- d.16.b.C.vibrioforme.fasta GAUCAGCCACAUUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.C.jejuni.fasta GAUCAGUCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.C.jejuni.GEN.fasta GAUCAGUCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.C.sputorum.fasta GAUCAGUCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.H.pylori.26695.GEN.fast GAACGGACACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.H.pylori.J99.GEN.fasta GAACGGACACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.H.pylori2.fasta GAACGGACACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.A.capsulatum.fasta GCACGGACACACUGGAACUGAAACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.H.foetida.fasta GAUCGGCCACACUGGAACUGAGACACGGUCCAGA--CUCCUACGGGAG-- d.16.b.A.globiformis.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.M.luteus.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.Frankia.sp.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.bottropensis.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.scabiei.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.neyagawaensis.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.diastatochromogenes.f GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.Streptomyces.sp.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.acidiscabies.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.griseus.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.ornatus.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.subrutilus.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.bikiniensis.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.galbus.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.hygroscopicus.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.lincolnensis.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.coelicolor.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.tendae.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.ambofaciens.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.eurythermus.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.nodosus.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.sampsonii.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.glaucescens.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.pseudogriseolus.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.caelestis.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.bluensis.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.espinosus.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.mashuensis.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.rimosus.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.limosus.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.odorifer.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.felleus.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.albidoflavus.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.gougerotii.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.rutgersensis.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.intermedius.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.thermodiastaticus.fas GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.thermoviolaceus.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.thermovulgaris.1.fast GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.thermovulgaris.2.fast GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.macrosporus.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.megasporus.fasta GACCGGUCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.S.thermolineatus.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.M.tuberculosis.2.fasta GUCCGGCCACACUGGGACUGAGAUACGGCCCAGA--CUCCUACGGGAG-- d.16.b.M.tuberculosis.3.fasta GUCCGGCCACACUGGGACUGAGAUACGGCCCAGA--CUCCUACGGGAG-- d.16.b.M.avium.fasta GUCCGGCCACACUGGGACUGAGAUACGGCCCAGA--CUNCUACGGGAG-- d.16.b.M.leprae.fasta GUCCGGCCACACUGGGACUGAGAUACGGCCCAGA--CUCCUACGGGAG-- d.16.b.M.leprae.GEN.fasta GUACGGCCACACUGGGACUGAGAUACGGCCCAGA--CUCCUACGGGAG-- d.16.b.M.tuberculosis.CDC1551. GUCCGGCCACACUGGGACUGAGAUACGGCCCAGA--CUCCUACGGGAG-- d.16.b.M.tuberculosis.GEN.fast GUCCGGCCACACUGGGACUGAGAUACGGCCCAGA--CUCCUACGGGAG-- d.16.b.N.asteroides.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.R.erythropolis.fasta GACCGGCCACACUGGGACUGAGACACGGCCCAGA--CUCCUACGGGAG-- d.16.b.C.diphtheriae.fasta GGACGGCCACAUUGGGACUGAGAUACGGCCCAGA--CUCCUACGGGAG-- d.16.b.A.israelii.fasta GGGCGGUCACACUGGGACUGAGAUACGGCCCAGA--CUCCUGCGGGAG-- d.16.b.B.hyodysenteriae.fasta GACCGGCCACAUUGGGACUGAGAUACGGCCCAGA--CUCCUACGGGAG-- d.16.b.G.subterranea.fasta GAUCGGCCACAAGGGAACUGAGACACGGUUCCUA--CUCCUACGGGAG-- d.16.b.P.miotherma.fasta GNACGGUCACAAGGGCACUGAGACACGGGCCNNN--CUCCUACGGGAG-- d.16.b.B.andersonii.fasta GGCCGGCCACAAGGGAACUGAGACACGGUCCCUA--CUCCUACGGGAG-- d.16.b.H.aurantiacus.fasta GACCAGACAGAUUGGGACUGAGACACGGCCCAAA--CUCCUACGGGGN-- d.16.b.Leptospirillium.sp.fast AACCAGCCACACUGGCACUGAGACACGGGCCAGA--CUCCUACGGGAG-- d.16.b.A.aeolicus.fasta GGCCGGCCACAGCGGGACUGAGACACGGCCCGCA--CCCCUACGGGGG-- d.16.b.A.pyrophilus.fasta GGCCGGCCACAGCGGGACUGAGACACGGCCCGCA--CCCCUACGGGGG-- d.16.b.T.maritima.fasta GGUCGGCCACAGGGGCACUGAGACACGGGCCCCA--CUCCUACGGGAG-- d.16.b.T.maritima.GEN.fasta GGUCGGCCACAGGGGCACUGAGACACGGGCCCCA--CUC-UACGGGAG-- n.16.b.T.thermophilus.2.num.fa GGCCGGCCACAGGGGCACUGAGACACGGGCCCCA--CUCCUACGGGAG-- s.16.b.T.thermophilus.2.schem. GGCCGGCCACAGGGGCACUGAGACACGGGCCCCA--CUCCUACGGGAG-- d.16.b.T.thermophilus.2.fasta GGCCGGCCACAGGGGCACUGAGACACGGGCCCCA--CUCCUACGGGAG-- s.16.b.T.thermophilus.1.schem. GGCCGGCCACAGGGGCACUGAGACACGGGCCCCA--CUCCUACGGGAG-- n.16.b.T.thermophilus.1.num.fa GGCCGGCCACAGGGGCACUGAGACACGGGCCCCA--CUCCUACGGGAG-- d.16.b.T.thermophilus.1.fasta GGCCGGCCACAGGGGCACUGAGACACGGGCCCCA--CUCCUACGGGAG-- d.16.b.T.aquaticus.fasta GGCCGGCCACAGGGGCACUGAGACACGGGCCCCA--CUCCUACGGGAG-- d.16.b.T.roseum.fasta GGCCAGCCACACGGGCACUGAGACACGGGCCCGA--CUCCUACGGGAG-- d.16.b.P.marina.fasta GGCCCGUCUCACUGGGACUGAGAUACUGCCCAGA--CACCUACGGGUG-- d.16.b.P.staleyi.fasta GCCCCCACUCACUGGGACUGAGACACUGCCCAGA--CACCUACGGGUG-- d.16.b.P.Schlesner.fasta GACCUGCCUCACUGGGACUGAGAUACUGCCCAGA--CACCUACGGGUG-- d.16.b.G.obscuriglobus.1.fasta GACCCGCGCCACUCGCACUGAGACACUGGCGAGA--CACCUACGGGUG-- d.16.b.I.pallida.fasta GGCCCGGCACACUGGGACUGAGACACUGCCCAGA--CUCCUACGGGAG-- d.16.a.P.abyssi.fasta GAGCCCGGAGAUGGACACUGAGACACGGGUCCAG--GCCCUACGGGGC-- d.16.a.P.horikoshii.fasta GAGCCCGGAGAUGGACACUGAGACACGGGUCCAG--GCCCUACGGGGC-- d.16.a.P.furiosus.fasta GAGCCCGGAGAUGGACACUGAGACACGGGUCCAG--GCCCUACGGGGC-- d.16.a.T.celer.fasta GAGCCCGGAGAUGGACACUGAGACACGGGUCCAG--GCCCUACGGGGC-- d.16.a.A.fulgidus.fasta GAGCCCGGAGAUGGACCCUGAGACACGGGUCCAG--GCCCUACGGGGC-- d.16.a.N.equitans.fasta GAGCCCCCAGAUCGGCACUGAGACAAGGGCCGAG--GCCCUACGGGGC-- d.16.a.A.pernix.K1.fasta GAGCCCCCAGAUGGGCACUGAGACAAGGGCCCAG--GCCCUACGGGGC-- d.16.a.P.occultum.fasta GAGNCCCCAGAUGGGCACUGAGACAAGGGCCCAG--GCCCUACGGGGC-- d.16.a.T.tenax.fasta GAGCCCCGAGAUGGGCACUGAGACAAGGGCCCAG--GCCCUACGGGGU-- d.16.a.S.acidocaldarius.fasta GAGCCUCCAGUUGGGCACUGAGACAAGGGCCCAG--GCCCUACGGGGC-- d.16.a.S.solfataricus.fasta GAGCCUCCAGUUGGGCACUGAGACAAGGGCCCAG--GCCCUACGGGGC-- d.16.a.S.solfataricus.2.fasta GAGCCCCCAGUUGGGCACUGAGACAAGGGCCCAG--GCCCUACGGGGC-- d.16.a.M.thermautotrophicus.1. GAGCCCGGAGAUGGAACCUGAGACAAGGUUCCAG--GCCCUACGGGGC-- d.16.a.M.thermautotrophicus.2. GAGCCCGGAGAUGGAACCUGAGACAAGGUUCCAG--GCCCUACGGGGC-- d.16.a.M.formicicum.fasta GAGCCCGGAGAUGGAACCUGAGACAAGGUUCCAG--GCCCUACGGGGC-- d.16.a.M.vannielii.fasta GAGCCCGGAGAUGGGGACUGAGACACGGCCCCAG--GCCCUACGGGGC-- d.16.a.H.marismortui.rrnA.fast GAACCUGGAGACGGUAUCUGAGACAAGAUACCGG--GCCCUACGGGGC-- d.16.a.H.marismortui.rrnB.fast GAGCCUGGAGACGGUAUCUGAGACAAGAUACCGG--GCCCUACGGGGC-- d.16.a.Halobacterium.sp.fasta GAGCCCGGAGACGGAAUCUGAGACAAGAUUCCGG--GCCCUACGGGGC-- d.16.a.N.bangense.fasta GAGCCCGGAGACGGUAUCUGAGACAAGAUACCGG--GCCCUACGGGGC-- d.16.a.N.innermongoliae.fasta GAGCCCGGAGACGGUAUCUGAGACAAGAUACCGG--GCCCUACGGGGC-- d.16.a.H.volcanii.fasta GAGCCCGGAGACGGAAUCUGAGACAAGAUUCCGG--GCCCUACGGGGC-- d.16.a.M.hungatei.fasta GAGCCCGGAGAUGGAUUCUGAGACACGAAUCCAG--GCCCUACGGGGC-- d.16.a.P.torridus.fasta UAGCCCGGAGAUGGACUCUGAGACACUAGUCCAG--GCCCUACGGGGC-- d.16.a.T.acidophilum.fasta GAGCCCGGAGAUGGACUCUGAGACAACAGUCCAG--GCCCUACGGGGC-- a.16.e.G.ardeae.fasta -------------------------------------------------- d.16.e.G.intestinalis.fasta -------------------------------------------------- a.16.e.G.muris.fasta -------------------------------------------------- d.16.e.A.bracteata.fasta -------------------------------------------------- d.16.e.Glomus.sp.W3349.fasta ------GAUGUCCUUAAUUG--G------------------------GUG d.16.e.S.cerradensis.fasta ------CAUGUUAUUAAUUU--A------------------------GCG a.16.e.G.intraradices.fasta ------AAUGCCAUUAAUUU--G------------------------GUG d.16.e.S.culisetae.fasta ------AAUAUUAUUUACGCAAG------------------------GAG a.16.e.P.balamuthi.fasta CCCGCCAGGGCUCUUAAUUGAGUCUUGGAUAUACCACCCGGACCGAUAAG d.16.e.A.flavus.fasta ---------GGCCUUCACUGGCU--------------------------- d.16.e.T.caries.fasta ---------GCUCUUUACUGGGU--------------------------- d.16.e.M.circinelloides.fasta ---------GCUAUGAAUAGCUUC-------------------------- d.16.e.M.racemosus.fasta ---------GCUAUGAAUAGCUUC-------------------------- d.16.e.R.oryzae.fasta ---------ACUCCUAGU--CCUC-------------------------- a.16.e.M.edulis.fasta -------UCCUGACCUACCU----------------CCCGGUUUUUU--- a.16.e.P.magellanicus.fasta -------UCCUGACCUACCU----------------CCCGGUUUU----- b.16.e.E.granulosus.fasta GUUAGGGUGGUUGGUUGGUUAGUUGACCAGCUGAUGUGCUCUUUCGUCGC d.16.e.D.melanogaster.fasta ------GUGAUUAAAUACUU---------------GUAUUUUUUCAU--- b.16.e.C.koreana.fasta --------GCUUGGACGAUU-------------------UUGUUGGU--- b.16.e.A.australis.fasta ---------ACCGGACGUUU---------------------GGCCGG--- b.16.e.O.utahensis.fasta ------GCGCCCGGCCGUGC---------GUAGGGGCACGUCCCCGAAGC b.16.e.A.salina.fasta -------CGAUCGGACAAUU--------------------CAUUGGA--- d.16.e.M.musculus.fasta ---------CCCCGCCCCUU------------------GCCUCUCGG--- d.16.e.R.norvegicus.fasta ---------CCCCGCCCCUU------------------GCCUCUCGG--- d.16.e.H.sapiens.fasta ---------CCCCGCCCCUU------------------GCCUCUCGG--- d.16.e.O.cuniculus.fasta ---------CCCCGCCCCUU------------------GCCUCUCGG--- d.16.e.X.borealis.fasta ---------CCCAGCCCCU-------------------GCCUCUCGG--- d.16.e.X.laevis.fasta ---------CCCAGCCCCU-------------------GCCUCUCGG--- d.16.e.A.castellanii.fasta CCGCCCGUCCCCUCCUUCUGGAU------UCCCGUUCCUGCUAUUGAGUU d.16.e.B.mandrillaris.fasta CUGCCCGCUCCUCUUGUCCGGGU------UCUCAUCCCUGCUAUUCACUU d.16.e.P.falciparum.A.fasta ------AAUACGCUUCCUCUAUU------A-UUAUGUUCUU--UAAAUAA d.16.e.P.falciparum.S.fasta ------AAUAAGGUUUUCUAAUA------AAUUAUGUUUUUAUCAGAUAU d.16.e.P.vivax.A.fasta -------UUGUGCGCAUUUUGC-------UAUUAUGUGUUCUUUUAAUUA d.16.e.P.vivax.O.fasta AUCGACAUUGUGCGCAUUUUGC-------UACUACGUGUUCUUCUAAUUA d.16.e.P.vivax.S.fasta -------CUGUGCGCAUCCUACC------UAUCAAGCGUUUUUUUAAUUA d.16.e.E.histolytica.fasta --------UAAAGUUUCUAGAAA------UGUUAAAUUAAAAUCAAA--- d.16.e.I.hoferi.fasta --------UCUGUACUGGUACGG------CAGUUUCUUCUUCUCGAAGGC d.16.e.Dermocystidium.sp.fasta -------UUGUACCGAGUCAGCC------AAUCCUUUCGCUUCCCGAAAG d.16.e.S.destruens.fasta -------UUUGCCCCGACGAGGG------UAUCCUU---CCUCUCGAAAU d.16.e.A.unguiculata.fasta --------AGCACUGCUCUGGUU------CGC--CAUCCUCUCGGAGGC- d.16.e.D.grandis.fasta --------AGCACUGCUAUCCUC------UGUGACAUCCUCUCAAAGUUU d.16.e.A.macrogynus.fasta --------AAUGU-GCAUUUGGC------UACAGGCCCUUUUUUUCUGCU d.16.e.B.emersonii.fasta --------AGUGUUGCUUUCGGG------UGCGGGCCCUUUAUUUCUGCU d.16.e.C.albicans.fasta ------------UUAUGGCGAAC------CAGGACUUUU-ACUUUGAAAA d.16.e.S.cerevisiae.fasta ---------GGCUCUUGGCGAAC------CAGGACUUUU-ACUUUGAAAA d.16.e.N.crassa.fasta ---------GUGUGUCGGGGAAC------CAGGACUUUU-ACCGUGAACA d.16.e.P.anserina.fasta ---------GCGUGCCGGGGAAC------CAGGACUUUU-ACUCUGAACA d.16.e.C.immitis.fasta ---------CUGUAG-GGGGAAC------CAGGACUUUU-ACUGUGAAAA d.16.e.L.major.fasta GCAUGUCAUGCAUGCCAGGGGGCGUC---CGUGAUUUUUUACUGUGACUA d.16.e.T.cruzi.fasta GCAUGUCAUGCAUGCCAGAGGGCGCC---CGUGAUUUUUUACUGUGACUA d.16.e.T.brucei.fasta GCAUGUCAUGCAUGCGAGGGGGCGUC---CGUGAAUUUU-ACUGUGACCA d.16.e.P.carinii.fasta ---------GUGUGCCGGAUAGC------CAGGGCAUUUUACUUUGAGAA d.16.e.C.neoformans.fasta --------UGCACU-GUCUUGCUG-----GACCUUACCUCCUGGUGGUCC d.16.e.Fungus.sp.QPX.fasta --------UGUACU-GUCCGGCCG-----GGUCUUACCUCCUGGUGAGGC d.16.e.U.maydis.fasta --------UGUACUUGACGGUCCG-----AGACUUCCUUCUUGGUGA--- d.16.e.M.leidyi.fasta --------CGUGUACUGAUCGGU--------CUGUUCUUCUUCGCGAAGA d.16.e.T.cystophora.fasta --------UGU-UACUGUCCACU--------CUGUCCUUCUUCGCAAGGA d.16.e.M.prolifera.fasta --------AGC--ACUGGUCAG---------CCGCCCUUCCUCUCGAAAG d.16.e.P.haeckeli.fasta --------AACGGUUCGUCGGGAAAG---GACGAUCUUCUUUCUCGAAGU d.16.e.E.rotunda.fasta --------UGAGUGCCGCUUUGAGUU---UGUCAUCCUU-CCAGAGAGCU d.16.e.P.chromatophora.fasta --------UGUGUGC-GUCCUGCGUU---UGCCAUCCUU-CCAGAGAGUU d.16.e.A.majus.fasta ---------GUGCACCGGUCGU-------CUCGUCCCUUCUGCCGGCGAU d.16.e.S.indicum.fasta ---------GUGCACCGGUCGU-------CUCGUCCCUUCUGCCGGCGAU d.16.e.D.grandiflora.fasta ---------GUGCACCGGUCAU-------CUCGUCCCUUCUGCCGGCGAU d.16.e.Pla.lanceolata.fasta ---------GUGUACCGGUCGU-------CUCGUCCCUUCUGCUGGCGAU d.16.e.N.tabacum.fasta ---------GUGCACCGGUCGU-------CUCGUCCCUUCUGCCGGCGAU d.16.e.A.thaliana.fasta ---------GUGCAUUGGUCGG-------CUUGUCCCUUCGGUCGGCGAU d.16.e.S.alba.fasta ---------GAGCACCGGUCGG-------CUUGUCCCUUCUGUCGGCGAU d.16.e.S.tuberosum.fasta ---------GUGCACCGGUCGU-------CUUGUCCCUUCUGUCGGCGAU d.16.e.F.x.ananassa.fasta ---------GUGCACCGGUCGG-------CUCGUCCCUUCUACCGGCGAU d.16.e.G.max.fasta ---------GUGCACCGGUCGG-------CUCGUCCCUUCUGCCGGCGAU d.16.e.O.sativa.fasta ---------AGGCACCGACCUG-------CUCGACCCUUCUGCCGGCGAU d.16.e.Z.mays.fasta ---------CAGAACCGACCGG-------CUCGACCCUUCUGCCGGCGAU d.16.e.A.verticilliflorum.fast ---------GUGUACCGGUUAC-------CUCGUCCCUCCUACCCAUGAU d.16.e.G.spirotaenia.fasta ---------UGAUACUAAAUUC-------CUCAUCCUUCUUGCCGGUGAC d.16.e.Staurastrum.sp.M752.fas ---------UGAUACUGUUUCC-------UCCAUCCUUCUUGCCGGGGAC d.16.e.C.paradoxa.fasta ---------GUGUACUGGCUGUA------CCCGUCCUUCCUUCCGGGGAU d.16.e.G.nostochinearum.fasta ---------GUGUACUAGUCGUG------CCCGUCCUUCCUUCCGGGGAU d.16.e.G.wittrockiana.fasta ---------GUGCACUGGUCGCU------CCCGUUCUUCCUUCCGCGUGC d.16.e.C.luteoviridis.fasta ---------GCGCACUGGUCGUG------CCGCGUCUCGCUGUCGGGGAC d.16.e.O.longa.fasta -------GCGUGUUCAGCGGCGCCC----CUUCAUCCUUCUGUUAACGUC d.16.e.P.weissei.fasta -------GCGUGUGCAGCGGUGCCC----UCUCAUCCUUCUGUUAACGUU d.16.e.C.citrina.fasta -------GCUUGUACUGAGAUGCCC----UUCCAUCCUACUGUUAACGUU d.16.e.G.steinii.fasta -------GAUUGUGCAGAGGCGCCC----UUCCAUCCUUCUGUUAACGUU d.16.e.Ple.lanceolata.fasta -------GACUGUGCAGCGGCGCUC----UUCCAUCCUUCUGUUAACGUU d.16.e.O.quadricornutus.fasta -------GACUGUGCAGCGGCGCUC----UUCCAUCCUUCUGUUAACGUU d.16.e.S.lemnae.fasta -------UCGUGUGCAGCGGUGCCU----CUCCAUCCUUCAGUUAACGUU d.16.e.S.mytilus.fasta -------UCGUGUGCAGCGGCGCCC----UUCCAUCCUUCUGUUAACGUU d.16.e.E.mobilis.fasta -------GCGUGUGCAGCGGAGCCC----UCUCAUCCUUCUGUUAACGUU d.16.e.O.granulifera.1.fasta -------GCGUGUGCAGCGGCGCCC----UUCCAUCCUUCUGUUAACGUU d.16.e.O.granulifera.2.fasta -------GCGUGUGCAG-AGCGCCC----UCCCAUCCUUCUGUUAACGUU d.16.e.U.gallina.fasta -------GCGUGUGCAGCGGCGCCC----UUCCAUCCUUCUGUUAACGUU d.16.e.U.pisces.fasta -------GCGUGUGCAGCGGCGCCC----UUCCAUCCUUCUGUUAACGUU d.16.e.P.lepisma.fasta -------GCGUGUGCAGAGGCGCUC----UUCCAUCCUUCUGUUAACGUU d.16.e.U.grandis.fasta -------GCGUGUGCUGCGUCGCCC----CUUCAUCCUUCUGUUAACGUU d.16.e.B.coli.fasta --------CGUGUAUAC-----------------UCUUUUUGAGUAUGCU d.16.e.E.aediculatus.fasta -------GCCAUCGCCCGACUCUUU----CCUCAUCCACCUGUUUGCGAA d.16.e.T.thermophila.fasta --------CGUGUGAAACUGGA----------CAUACGUUUGCAAACUAA d.16.e.Bangia.sp.NWT.fasta --UUUUGCCUUGUGCCAGUGGGAGUUU--GUCUCCUUUUGUCGGGACGCG d.16.e.Bangia.sp.VIS7.fasta --UUCCGACG-GCGCCUGUGAGCUGCU--G-CUCCUAUUUCCGGAACGUG d.16.e.E.carnea.fasta --CCACUGGUCGUGCUUGUGUGGUG------CGCCUUCCUUCCAG-CG-A d.16.e.R.parvula.fasta --CCACUGGUCGUGCUUGUGCAGCA------UGCCUUCCUUCCAG-CG-A d.16.e.C.coeruleus.fasta --CUGUGCCGUGUGGCGUCUGGACA------GGCCUUGUUAGCGGACG-A d.16.e.P.aerugineum.1.fasta --CAACUCGGUGYGGUGUUCCGCC--------GCCUUCCUCGGUG-UG-A d.16.e.R.maculata.fasta --CCACGGCGAACGCCGGGUGGG---------GCCUUCCUUCUGG--GAU d.16.e.A.ambigua.fasta --------UGUUGGUACGUGACUG-UAUCUCUGCCC-UCCUUGGUUGGAU d.16.e.A.baicalensis.fasta --------UGUUGGUUCGUGACUG-UAUCUCUGCCC-UCCUUGGUUGGAG d.16.e.S.nipponica.fasta --------UGUUGGUACUUGUGU--UGUCUCUGGCCAUCCUUGGGGAGAG d.16.e.C.radiatus.fasta --------GGUUUCAACUUGUAU--UGUCUCUGGCCAUCUUUGGGGAGAG d.16.e.C.criophilum.fasta --------AGUAUGCACCUAUCC----AGUUUGACCAUCCUUUGGGAGAR d.16.e.A.capitellata.fasta -----------CGGUACU---UU--CUGGGACUGCCAUCCUUGGGUGGAU d.16.e.S.pupula.fasta -----------UGGUUCU---GC--ACGUUGCAUCCAUCCUUGGGUGGAA d.16.e.T.antarctica.fasta --------UGAUAGUGCU---UU--ACUGGUCUGCCAUGUUUGGGUGGAA d.16.e.E.triangulatum.fasta -----------UGGUACU---UU--CAUGAUCAGCCAUCCUUGGGUGGAA d.16.e.A.bongranii.fasta -----------CAGCGCUC--UU--CCUGCGACGCCAUCCUUGGGUUGAA d.16.e.Pseudogomphonema.sp.fas --------UCUGAGCAGU-------UCGCCGCUGCCAUCCUUGGGUGGAA d.16.e.D.tenue.fasta --------UGUUGGUGCUUG-GU--UGUCUCCGUCCAUCCUUGGGUGGAG d.16.e.G.marina.fasta --------UGCAGGUACUUG-GU--UGUCUCCGUCCAUCCUUGGGGGGAA d.16.e.Thalassionema.sp.fasta --------CGUUGGUACCUG-AG--C-CAUGCUCCCAUCCUUGGGUGGAA d.16.e.R.belgicae.fasta --------UGUGAGCGCUGU-GC--CUUUUCCAUCCAUCCUUGGGUGGAA d.16.e.Undatella.sp.fasta --------UGUUGGUGCU---AC--UCGGAGUCGCCAUCCUUGAAUGGAA d.16.e.C.belgica.fasta --------CGUGGGUACUUGCGU--CGUCUCCGGCCAUCCUUGGGGAGAG d.16.e.O.sinensis.fasta --------UGYGGGUACUUGUAU--UGUCUCCCGCCAUCCUUGGGGAGAG d.16.e.D.brightwellii.fasta --------UGUGAGUACUCGUAU--UGUCUCCGGCCAUCCUUGGGCGGAG d.16.e.L.undulatum.fasta --------UGUGGGUACUCGUAU--UGUCUCCGGCCAUCCUUGGGUCUAU d.16.e.T.eccentrica.fasta --------UGSUG--ACUUGUGU--UGUCUCUGGCCAUCCUUGGGGAGAU d.16.e.T.pseudonana.fasta --------UGCGAGAACUCGUGU--UGUCUCUGGCCAUCCUUGGGGAUAU d.16.e.S.costatum.fasta --------UGUGUG-AGUUGUGU--CAU-UCUGGCCAUCCUUGGUGAGAU d.16.e.P.laevis.fasta --------CGCAGAUACUUCGAU--UGCCUCCUGCCAUCCUCGGGGAGAG d.16.e.L.borealis.fasta --------CGCGGGCACUCGUGU--CGAGCUAGAUCAUUCUUGG-UGAUA d.16.e.P.pseudodenticulata.fas --------CGUGRRCACUUGUGU--UGUAUUAGGUCAUUCUUGGAUUUUA d.16.e.B.mediterranea.fasta --------GUC-UGUACC-GUCG--CAUGUGUCGCCAUCCUUGGUUAAAA d.16.e.B.pacifica.fasta --------GUC-UGUGCC-GAAA--UGUUAUUCGCCAUCCUUGGUGUAAU d.16.e.L.minuta.fasta --------UUCGUGUAUU-GUGU--UUUCUCCAGCCAUCCUUGUGGAGAA d.16.e.L.danicus.fasta --------CAACUUGGCUCAUUU---GGAAUACGCCAUCUUUAGGCAGAC d.16.e.Chaetoceros.sp.fasta ----------UGGGUAUUUAAUC---CUCUUGCCUCGUCCUUGAGUGGUG d.16.e.A.invadans.fasta --------UGUCAGUACUAUGGA--UGUUUGGGCCAUAUUUUGUGAGGAU d.16.e.L.giganteum.fasta --------AGUGUGUACUAAGGA--UGUUUGAGCCAUUUUUUGUGAGGAU d.16.e.M.varians.fasta ---------GAAAGAGUC----------GUUUAGCCUUUAAUGAUUAAUG d.16.e.B.hominis.fasta ------------GUCUCUCGACAG-UAAGUCACCCCCUUCCAGUAUCCAG d.16.e.P.marinus.fasta -CGGGAUUGGUUGGUAUCAGGUUU----GACCUUGGCUUUUUCUUGGGAU d.16.e.T.gondii.fasta -CAGG---GGUGUGCACUUGGUG-----AAUUCUAGCAUCCUUCUGGAUU d.16.e.A.fundyense.fasta -CUGG----GUGAGUAUUUGGCAC----AGCCUGAGCAUUUAUCUUGAAA d.16.e.B.bigemina.fasta -U---------UUCCCUUUUGUU-------GGGUCUUUUCGCU-GGCUUU d.16.e.B.canis.fasta -U---------GUUGCCUUUGUG-------GCUUGAUUCCGCUUGGCUUU d.16.e.Babesia.sp.OKD.fasta -G---------GCUACUUGCCUU-------GUCUGGUUUCGCU----UUU d.16.e.B.microti.1.fasta -CCGA----GCGUUUUUUUAUUG-------ACUUGGCAUCUUCUGGAUUU d.16.e.B.microti.2.fasta -CCGA----GCGUUUUUUUAUUG-------GCUUGGCAUCAUCUGGAUUU d.16.e.B.microti.3.fasta -UCGA----GCGUUAUUUUAUUG-------ACUUGGCAUCUUCUGGAUUU d.16.e.B.microti.4.fasta -CCGA----GCGUUUUUUUAUUG-------GCUUGGCAUCUUCUGGAUUU d.16.e.B.microti.5.fasta -CCGA----GCGUUUUUUUAUUG-------ACUUGGCAUCUUCUGGAUUU d.16.e.B.rodhaini.fasta -CCAA----GCGUU-UGUAAUUG-------ACUUGGCAUCUUUGUGGAUU d.16.e.B.gibsoni.fasta -UCGG----GCUUCGUUUUCUCG-------G--UGGCAUCCCUCUGGUUA d.16.e.B.bovis.fasta -----------GUCCUUUCCUCG-------CCGGGACGCCUCG------- d.16.e.J.libera.fasta -CUCGCCGUUCAUGCCCGCAGGGAGCCCCUCCUGGACCCCACCCGA--UC d.16.e.R.americana.fasta -CUGGUCGAUUACGCCCUCAGG-----CCUCCUGGACCCCGCCCGACUUU d.16.e.B.ostreae.fasta ------CACACACGUGCAGAGCGGCCGCCCGGGGGCAUAAUUCAGGAACG d.16.e.A.dasyae.fasta ------GGGAUGUUCUUUUGUGGA-------GGGCGGCGCGUCGUGGCUU d.16.e.A.hermannii.fasta ------GGGGCGCGCUUUUGUGGA-------GGGCGGCGCGUCGUGGCUU d.16.e.N.helminthoides.fasta ------GGGGCACGCUUUUGUGGA-------AGGCGGCAUUUCGUGGCUU d.16.e.B.gelatinosum.fasta ------GGGGCGUGCUUUUGUGGA-------GGGCGGCCGCUCGUGGCUU d.16.e.N.tortuosa.fasta ------GGGGCGUGCUUUUGUGGA-------UGGCGGCACGUGGUGGCUU d.16.e.T.hispida.fasta GUAUGAAGGGUGCGCUUUUGUGGA-------GGGCGGCGCGUGGUGGCUU d.16.e.T.violacea.4.fasta -UAUGAAGGGUGCGCUUUUGUGGA-------GGGCGGCGCGUGGUGGCUU d.16.e.T.violacea.1.fasta UUUUUUCGGGCGUGCUUUUGUGGA-------GGGCGACACGUGGUGGCUU d.16.e.T.violacea.2.fasta UUUUUUCGGGCGCGCUUUUGUGGA-------GGGCGACACGUGGUGGCUU d.16.e.N.shawii.fasta ------GGGACGUGCUUUUGUGGA-------UGGCGGCACGUGGUGGCUU d.16.e.B.investiens.fasta ------UGGGCGCGCUUUUGUGGA-------GGGCGGCGCGUCGUGGCUU d.16.e.B.macrosporum.fasta ------GGGACGUGCUUUUGUGGA-------UGGCGGCCGCACGUGGCUU d.16.e.A.plicata.fasta ------CGCGCCUGCUUUUGUGGA-------GGGCGCGAGCGGGCGGCUU d.16.e.C.officinalis.fasta -----CAGGGGUUGCUUUUGUGGGCA----UGCGUGGGAUGAUGCGACUU d.16.e.R.carriebowensis.fasta -----UCGAGGCUGCUUUUGUGGAU-----UGCGCGCACGG--GCGGCUU d.16.e.B.hamifera.fasta ---------GGCCGCCUUUGUGGAUG-----GGGGCUAGAGC-GAUGUUU d.16.e.G.vagum.fasta ---------GGCCGCCUUUGUGGAGG-----GGGGCUU-AGC-GGUGCUU d.16.e.C.crispus.fasta ---------GGCCGCCUUUGUGGAUG-----GGGGCCU-AGU-GGAGCUU d.16.e.H.plana.fasta ---------GGCCGCCUUUGUGGAGG-----GGGGCCU-AGU-GGUGCUU d.16.e.R.leptophylla.fasta ---------GGCCGCCUUUGUGGAGG-----GGGGCCU-AGU-GGUUCUU d.16.e.P.pulvinata.fasta ---------GGCUGCCUUUGUGGAGG-----GGGGCCU-AGU-GGUGCUU d.16.e.C.rubrum.fasta ---------GGCCGCCUUUGUGGAGG-----GGGGCUUAGGUCGGUGCUU d.16.e.Gracilariopsis.sp.fasta ---------GUGCGCCUUUGUGGAGA-----GGGGGUGUGGU-GGUGCUU d.16.e.B.moritziana.fasta ----------CUCGUCCUUGUGGAUUU--UUGGGGGUGUGGU-GGUACUU d.16.e.H.rubra.fasta ------GCCCGGCUCUUUUGGGGAA------AUGGCCGGAGUAGGGUUUU d.16.e.D.grisea.fasta ---UGAACGGUCUUCCUUCUUGGA-------AGUUUACAUACUCUUUAUU d.16.e.N.fowleri.fasta ---UUGGUGAACUUUAGCUGGACAGGACUUCUGGUCCUCGUCUGGCAGUU d.16.e.N.gruberi.fasta ---UUGGUAGACUUUAGUCGGGCUGGAUCUUUGGUCCUCGUCUGACAGUU a.16.e.Hexamita.sp.fasta -------------------------------------------------- d.16.e.T.foetus.fasta -------------------------------------------------- d.16.e.A.khaliulini.fasta -------------------------------------------------- d.16.e.E.aedis.fasta -------------------------------------------------- d.16.e.A.connecticus.fasta -------------------------------------------------- d.16.e.I.barri.fasta -------------------------------------------------- d.16.e.A.ferocious.fasta -------------------------------------------------- d.16.e.Amblyospora.sp.fasta -------------------------------------------------- d.16.e.C.lunata.fasta -------------------------------------------------- d.16.e.P.anophelis.fasta -------------------------------------------------- d.16.e.Hazardia.sp.fasta -------------------------------------------------- d.16.e.H.milleri.fasta -------------------------------------------------- d.16.e.P.simulii.fasta -------------------------------------------------- d.16.e.W.palustris.fasta -------------------------------------------------- d.16.e.Nosema.sp.03.fasta -------------------------------------------------- d.16.e.Nosema.sp.05.fasta -------------------------------------------------- d.16.e.Endoreticulatus.sp.fast -------------------------------------------------- d.16.e.Nosema.sp.02.fasta -------------------------------------------------- d.16.e.N.spodopterae.fasta -------------------------------------------------- d.16.e.N.trichoplusiae.fasta -------------------------------------------------- d.16.e.N.bombycis.27.fasta -------------------------------------------------- d.16.e.N.bombycis.02.fasta -------------------------------------------------- d.16.e.V.imperfecta.fasta -------------------------------------------------- d.16.e.N.furnacalis.fasta -------------------------------------------------- d.16.e.Microsporidium57864.fas -------------------------------------------------- d.16.e.Vairimorpha.sp.C21.fast -------------------------------------------------- d.16.e.N.oulemae.fasta -------------------------------------------------- d.16.e.N.necatrix.fasta -------------------------------------------------- d.16.e.V.necatrix.fasta -------------------------------------------------- d.16.e.N.apis.fasta -------------------------------------------------- d.16.e.O.occidentalis.fasta -------------------------------------------------- d.16.e.Microsporidium.sp.DP119 -------------------------------------------------- d.16.e.V.corneae.fasta -------------------------------------------------- d.16.e.A.michaelis.fasta -------------------------------------------------- d.16.e.T.contejeani.fasta -------------------------------------------------- d.16.e.E.hellem.fasta -------------------------------------------------- d.16.e.Encephalitozoon.sp.fast -------------------------------------------------- d.16.e.E.cuniculi.fasta -------------------------------------------------- d.16.e.O.colligata.fasta -------------------------------------------------- d.16.e.E.salmonis.fasta -------------------------------------------------- d.16.e.N.salmonis.fasta -------------------------------------------------- d.16.e.Enterocytozoonidae.sp.f -------------------------------------------------- d.16.e.E.bieneusi.fasta -------------------------------------------------- d.16.e.B.algerae.fasta -------------------------------------------------- d.16.e.T.solenopsae.fasta -------------------------------------------------- d.16.e.V.acridophagus.fasta -------------------------------------------------- d.16.e.Bacillidium.sp.fasta -------------------------------------------------- d.16.e.P.cristatellae.fasta -------------------------------------------------- d.16.e.Pleistophora.sp.fasta -------------------------------------------------- d.16.e.O.operophterae.fasta -------------------------------------------------- d.16.e.F.magnivora.fasta -------------------------------------------------- d.16.e.G.atherinae.fasta -------------------------------------------------- d.16.e.Ichthyosporidium.sp.fas -------------------------------------------------- d.16.e.L.acerinae.fasta -------------------------------------------------- d.16.e.H.anguillarum.fasta -------------------------------------------------- d.16.e.P.mirandellae.fasta -------------------------------------------------- d.16.e.T.hominis.fasta -------------------------------------------------- d.16.e.V.culicis.fasta -------------------------------------------------- d.16.e.P.hippoglossoideos.fast -------------------------------------------------- d.16.e.Microgemma.sp.fasta -------------------------------------------------- d.16.e.S.lophii.fasta -------------------------------------------------- d.16.e.Pleistophora.sp.LS.fast -------------------------------------------------- d.16.e.D.gammarellum.fasta -------------------------------------------------- d.16.e.M.prosopium.fasta -------------------------------------------------- d.16.e.A.scoticae.fasta -------------------------------------------------- d.16.e.P.whitei.fasta -------------------------------------------------- a.16.c.C.coccineum.fasta GCAGC-AGUGGGGAAUUUUCCGC-AAUGGGCGAAA--------GC-UGAC a.16.c.C.ruber.fasta GCAGC-AGUGGGGAAUUUUCCGC-AAUGGGCUAAA--------GC-UGAC d.16.c.N.tabacum.fasta GCAGC-AGUGGGGAAUUUUCCGC-AAUGGGCGAAA--------GC--GAC d.16.c.S.oleracea.fasta GCAGC-AGUGGGGAAUUUUCCGC-AAUGGGCGAAA--------GCCUGAC d.16.c.Z.mays.fasta GCAGC-AGUGGGGAAUUUUCCGC-AAUGGGCGAAA--------GCCUGAC d.16.c.M.polymorpha.fasta GCAGC-AGUGGGGAAUUUUCCGC-AAUGGGCGAAA---------CGUGAC d.16.c.R.communis.fasta GCAGC-AGUGGGGAAUUUUCCGC-AAUGGGCGAAA--------GCCUGAC d.16.c.C.vulgaris.fasta GCAGC-AGUGAGGAAUUUUCCGC-AAUGGGCGACA--------GCCUGAC d.16.c.P.wickerhamii.fasta GCAGC-AGUGAGGAAUUUUCCGC-AAUGGGCGAAA--------GCCUGAC d.16.c.P.minor.fasta GCAGC-AGUGAGGAAUUUUCCGC-AAUGGGCGAAA--------GCCUGAC d.16.c.N.olivacea.fasta GCAGC-AGUGGGGAAUUUUCCGC-AAUGGGCGAAA--------GCCUGAC d.16.c.P.parkeae.fasta GCAGC-AGUGGGGAAUUUUCCGC-AAUGGGCGAAA--------GCCUGAC d.16.c.C.reinhardtii.fasta GCAGC-AGUGAGGAAUUUUUCGC-AAUGGGCGCAA--------GC--GAC b.16.m.A.castellanii.fasta GCAGC-AGUGGAGAAUAUUUGAC-AAUGGGCGAAA--------GCUUGAU d.16.c.P.thurberi.fasta UCAGC-AGUGGGGGAUAUUCUGC-AAUGGGCAAUAAGU-----GCCUGAC b.16.m.C.crispus.fasta GCAGC-AGUGAGGAAUAUUGGGC-AAUGGGUGAAA--------GCUUGAC d.16.c.T.gondii.fasta GCAGC-AGUGGGGAAUUUUCUGCCAAUAAGCGCAA--------GCUUGAC b.16.m.N.crassa.fasta AGGCU-GAUCGACCACAUUGGG--AAUGAAAAAAU--------CCCAAGG b.16.m.P.anserina.fasta AGGUU-GAUCGACCACAUUGGG--GAUGAAAAAAU--------CCCAAGG b.16.m.P.chrysogenum.fasta AAGUU-GAUCGACCACAUUGGG--UCUGAAAAAAA--------CCCAAUG b.16.m.E.nidulans.fasta AGGUC-GAUCGACCACAUUGGG--UCUGAAAAAAC--------CCCAAUG b.16.m.S.cerevisiae.fasta -CAGC-AGUGAGGAAUAUUGGAC-AAUGAUCGAAA--------GAUUGAU b.16.m.W.saturnus.m.fasta -CAGC-AGUGAGGAAUAUUGGGC-UUAGAUCGAAA--------GAUUGAC b.16.m.P.minor.fasta -CAGC-AGUGUAAAACAUUAGAC-AAUAAGUAUAG--------GCUUGAU d.16.c.P.falciparum.fasta UCAGC-AGUGAGGAAUAUUUUAC-AAUAAGUGUAA--------GCUUGAU d.16.c.B.bovis.fasta GCAGC-AGUGGGGAAUAUUCUAC-AAUUAGUGAAA--------ACUAGAU b.16.m.T.pyriformis.fasta -UA---AGCCUA-GAUGUUUAGU-UGAAUUUAG-A--------GAUU-GU d.16.m.S.sinuspaulianus.fasta CCA---AGCCGACAAUCAAUAGC-CAUGCUUGACA--------GAGC-AG b.16.m.P.tetraurelia.fasta -CAGA-AGUGGGGAAUUUUGGGC-AAUGCGCUUAA--------GCGUGAC b.16.m.D.discoideum.fasta GCUGC-AGUAAGGAAUAUUGGAC-AAUGAGCGCAA--------GCUUGAU d.16.m.P.polycephalum.fasta -UAAA-AUAGUGAUAAUUCUAGC-AACGACU-UAA--------GCGCAAU b.16.m.P.littoralis.fasta GCAGC-AGUAAGGAAUAUUGCAC-AAUGAGCGAAA--------GCUUGAU b.16.m.P.wickerhamii.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGCGCAA--------GCCUGAU d.16.c.H.africana.fasta GCAGC-AGUGGGGAAUUUUCCGC-AAUGGGCGAAA---------GCUGAC d.16.c.C.fragile.fasta GCAGC-AGUGAGGAAUUUUCCGC-AAUGGGCGAAA--------GCCUGAC d.16.c.C.sertularioides.fasta GCAGC-AGUGAGGAAUUUUCCGC-AAUGGGCGAAA--------GCCUGAC d.16.c.C.humicola.fasta GCAGC-AGUGAGGAAUUUUCCAC-AAUGGGCGAAA--------GCCUGAU d.16.c.P.uvella.fasta ACAGC-AGUGGCUAAUAUUUCAC-AAUGGGCGAAA--------GCCUGAU a.16.c.G.nostochinearum.fasta GCAGC-AGUGGGGAAUUUUCCGC-AAUGGGCGAAA--------GC-UGAC a.16.c.G.wittrockiana.fasta GCAGC-AGUGGGGAAUUUUCCGC-AAUGGGCGAAA--------GC-UGAC d.16.c.C.paradoxa.fasta GCAGC-AGUGGGGAAUUUUCCGC-AAUGGGCGAAA--------GC-UGAC d.16.y.C.paradoxa.fasta GCAGC-AGUGGGGAAUUUUCCGC-AAUGGGCGAAA--------GCCUGAC d.16.c.Cryptomonas.sp.fasta GCAGC-AGUGGGGAAUUUUCCGC-AAUGGGCGCAA--------GCCUGAC d.16.c.P.palmata.fasta GCAGC-AGUGGGGAAUUUUCCGC-AAUGGGCGAAA--------GC-UGAC d.16.c.H.akashiwo.fasta GCAGC-AGUGGGGAAUUUUCUGC-AAUGGGCGAAA--------GCCUGAC d.16.c.S.pseudocostatum.fasta GCAGC-AGUGGGGAAUUUUCCGC-AAUGGGCGAAA--------GC-UGAC d.16.c.P.littoralis.fasta GCAGC-AGUGGGGAAUUUUCUGC-AAUGGGCGAAA---------CUGAAC d.16.c.C.caldarium.fasta GCAGC-AGUGGGGAAUUUUCCAC-AAUGGGCGAAA--------GCCUGAU a.16.c.E.huxleyi.fasta GCAGC-AGUGAGGAAUUUUCCGC-AAUGGGCGAAA--------GC-UGAC d.16.c.E.gracilis.fasta GCAGC-AGUGAGGAAUUUUCCGC-AAUGGGCGCAA--------GCCUGAC d.16.b.Anabaena.sp.fasta GCAGC-AGUGGGGAAUUUUCCGC-AAUGGGCGAAA--------GCCUGAC d.16.b.Chlorogloeopsis.PCC7518 GCAGC-AGUGGGGAAUUUUCCGC-AAUGGGCGNAA--------GCCUGAC d.16.b.Synechococcus.sp.fasta GCAGC-AGUGGGGAAUUUUCCGC-AAUGGGCGCAA--------GC--GAC d.16.b.Synechocystis.PCC6803.G GCAGC-AGUGGGGAAUUUUCCGC-AAUGGGCGAAA--------GCCUGAC d.16.b.O.agardhii.fasta GCAGC-AGUGGGGAAUUUUCCGC-AAUGGGCGAAA--------GC-UGAC d.16.b.Pleurocapsa.7516.fasta GCAGC-AGUGGGGAAUUUUCCGC-AAUGGGCGAAA--------GC-UGAC d.16.b.M.aeruginosa.fasta GCAGC-AGUGGGGAAUUUUCCGC-AAUGGGCGAAA--------GCCUGAC b.16.m.C.reinhardtii.fasta CCAGC-AGUGUUGAAUUUUGGACAAUCGCUUGAAC--------GGCGGAU d.16.m.C.eugametos.fasta UCAGC-AGUAGAGAAUAUUGGACAAU-GUAAAAAC--------AUAUGAU b.16.m.M.senile.fasta GCAGC-AGUAGAGAAUCUUGUGCAAU-GCACGAAA--------GUAUGAC d.16.b.S.pneumoniae.fasta GCNGC-NGUNGGGAAUCUUCGGCAAU-GGACGGAA--------GUCUGAC d.16.b.S.pyogenes.fasta GCAGC-NGUAGGGAAUCUUCGGCNAU-GGGGGNNA--------CCCNNAC d.16.b.B.anthracis.fasta GCAGC-AGUAGGGAAUCUUCCGCAAU-GGACGAAA--------GUCUGAC d.16.b.B.cereus.1.fasta GCAGC-AGUNGGGAAUCUUCCGCAAU-GGACGAAA--------GUCUGAC d.16.b.E.faecalis.fasta GCAGC-AGUAGGGAAUCUUCGGCAAU-GGACGAAA--------GUCUGAC d.16.b.E.faecium2.fasta GCAGC-AGUAGGGAAUCUUCGGCAAU-GGACGAAA--------GUCUGAC d.16.b.L.monocytogenes.fasta GCAGC-AGUAGGGAAUCUUCCGCAAU-GGACGAAA--------GUCUGAC d.16.b.B.subtilis.fasta GCAGC-AGUAGGGAAUCUUCCGCAAU-GGACGAAA--------GUCUGAC d.16.b.B.subtilis.GEN.fasta GCAGC-AGUAGGGAAUCUUCCGCAAU-GGACGAAA--------GUCUGAC d.16.b.B.halodurans.fasta GCAGC-AGUAGGGAAUCUUCCGCAAU-GGACGAAA--------GUCUGAC d.16.b.S.aureus.fasta GCAGC-AGUAGGGAAUCUUCCGCAAU-GGGCGAAA--------GCCUGAC d.16.b.S.aureus.GEN.fasta GCAGC-AGUAGGGAAUCUUCCGCAAU-GGGCGAAA--------GCCUGAC d.16.b.L.lactis.GEN.fasta GCAGC-AGUAGGGAAUCUUCGGCAAU-GGACGAAA--------GUCUGAC d.16.b.S.pyogenes.GEN.fasta GCAGC-AGUAGGGAAUCUUCGGCAAU-GGGGGCAA--------CCCUGAC d.16.b.L.acidophilus.fasta GCAGC-NGUAGGGAAUCUUCCACAAU-GGACGAAA--------GUCUGAU d.16.b.M.capricolum.fasta GCAGC-AGUAGGGAAUUUUUCACAAU-GGACGAAA--------GUCUGAU d.16.b.M.mycoides.fasta GCAGC-AGUAGGGAAUUUUUCACAAU-GGACGAAA--------GUCUGAU d.16.b.E.rhusiopathiae.fasta GCAGC-AGUAGGGAAUUUUCGGCAAU-GGGGGAAA--------CCCUGAC d.16.b.C.innocuum.fasta GCAGC-AGUAGGGAAUUUUCGUCAAU-GGGGGAAA--------CCCUGAA d.16.b.M.genitalium.fasta GCAGC-AGUAGGGAAUUUUUCACAAU-GAGCGAAA--------GCUUGAU d.16.b.M.pneumoniae.GEN.fasta GCAGC-AGUAGGGAAUUUUUCACAAU-GAGCGAAA--------GCUUGAU d.16.b.M.pneumoniae.fasta NCAGC-AGUAGGGAAUUUUUCACAAU-GAGCGAAA--------GCUUGAU d.16.b.M.gallisepticum.fasta GCAGC-AGUAGGGAAUUUUUCACAAU-GGACGAAA--------GUCUGAU d.16.b.U.urealyticum.fasta GCAGC-AGUAGGGAAUUUUUCACAAU-GGGCGCAA--------GCCUUAU d.16.b.U.urealyticum.GEN.fasta GCAGC-AGUAGGGAAUUUUUCACAAU-GGGCGCAA--------GCCUUAU d.16.b.M.hyopneumoniae.fasta GCAGC-AGUAAGGAAUAUUCCACAAU-AAGCGAAA--------GCUUGAU d.16.b.F.necrophorum.fasta GCAGC-AGUGGGGAAUAUUGGACAAUGGACCACAA--------GUCUGAU d.16.b.F.nucleatum.fasta GCAGC-AGUGGGGAAUAUUGGACAAUGGACCGAGA--------GUCUGAU d.16.b.S.moniliformis.fasta GCAGC-AGUGGGGAAUAUUGGACAAUGGAG-GAAA--------CUCUGAU d.16.b.C.botulinum.F.fasta GCAGC-AGUGGGGAAUAUUGCGCAAU-GGGGGAAA--------CCCUGAC d.16.b.C.tetani.fasta GCAGC-AGUGGGGAAUAUUGCGCAAU-GGGGGAAA--------CCCUGAC d.16.b.C.perfringens.fasta GCAGC-AGUGGGGAAUAUUGCACAAU-GGGGGAAA--------CCCUGAU d.16.b.C.difficile.fasta GCAGC-AGUGGGGAAUAUUGCACAAU-GGGCGAAA--------GCCUGAU d.16.b.E.brachy.fasta GCAGC-AGUGGGGAAUAUUGCACAAU-GGGGGAAA--------CCCUGAU d.16.b.Epulopiscium.sp.fasta GCAGC-AGUGGGGAAUAUUGCACAAU-GGGCGAAA--------GCCUGAU d.16.b.H.chlorum.fasta GCAGC-AGUGGGGAAUCUUCCGCAAU-GGGCGAAA--------GCCUGAC b.16.m.G.max.fasta GCAGC-AGUGGGGAAUCUUGGAC-AAUGGGCGAAA--------GCCCGAU b.16.m.O.berteriana.fasta GCAGC-AGUGGGGAAUCUUGGAC-AAUGGGCGAAA--------GCCCGAU b.16.m.S.cereale.fasta GCAGC-AGUGGGGAAUCUUGGAC-AAUGGGCGAAA--------GCCCGAU b.16.m.T.aestivum.fasta GCAGC-AGUGGGGAAUCUUGGAC-AAUGGGCGAAA--------GCCCGAU d.16.m.Z.mays.fasta GCAGC-AGUGGGGAAUCUUGGAC-AAUGGGCGAAA--------GCCCGAU b.16.m.M.polymorpha.fasta GCUGC-AGUGGGGAAUCUUGGAC-AAUGGGCGAAA--------GCCUGAU b.16.m.N.olivacea.fasta GCAGC-AGUGGGGAAUCUUGGAC-AAUGGGCGAAA--------GCCUGAU d.16.b.G.liquefaciens.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGCGCAA--------GCCUGAU d.16.b.B.japonicum.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGGGCAA--------CCCUGAU d.16.b.R.acidophilus.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGCGCAA--------GCCNGAU d.16.b.A.caulinodans.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGCGCAA--------GCCUGAU d.16.b.B.quintana.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGGGCAA--------CCCUGAU d.16.b.M.loti.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGCGCAA--------GCCUGAU d.16.b.A.tumefaciens.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGCGCAA--------GCCUGAU d.16.b.B.bacilliformis.fasta GCAGCUAGUGGGNNAUAUUGGAC-AAUGGGNNNAA--------CCCUGAU d.16.b.B.henselae.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGGGCAA--------CCCUGAU d.16.b.B.melitensis.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGCGCAA--------GCCUGAU d.16.b.R.orientis.fasta GCAGC-AGUGAGGAAUAUUGGAC-AAUGGGCGCAA--------GCCUGAU d.16.b.Methylobacterium.sp.fas GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGCGCAA--------GCCUGAU d.16.b.R.bellii.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGCGAAA--------GCCUGAU d.16.b.R.felis.URRWXCal2.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGCGAAA--------GCCUGAU d.16.b.R.prowazekii.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGCGAAA--------GCCUGAU d.16.b.R.prowazekii.GEN.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGCGAAA--------GCCUGAU d.16.b.R.rickettsii.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGCGAAA--------GCCUGAU d.16.b.A.calcoaceticus.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGCGCAA--------GCCNGAU d.16.b.P.pacificensis.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGG-GGGA--------ACCUGAU d.16.b.C.marismortui.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGCGAAA--------GCCUGAU d.16.b.H.halodenitrificans.fas GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGCGAAA--------GCCUGAU d.16.b.P.aeruginosa.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGCGAAA--------GCCNGAU d.16.b.P.aeruginosa.GEN.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGCGAAA--------GCCUGAU d.16.b.Pseudomonas.sp.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGCGAAA--------GCCUGAU d.16.b.P.putida.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGCGAAA--------GCCUGAU d.16.b.C.burnetii.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGGGAAA--------CCCUGAU d.16.b.M.capsulatus.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGCGCAA--------GCCUGAU d.16.b.L.pneumophila.1.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGGGCAA--------CCCUGAU d.16.b.L.pneumophila.2.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGGGCAA--------CCCUGAU d.16.b.A.vinosum.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGGGAAA--------CCCUGAU d.16.b.Beggiatoa.sp.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGCGAAA--------GCCUGAU d.16.b.A.hydrophila.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGGGAAA--------CCCUGAU d.16.b.S.putrefaciens.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGGGAAA--------CCCUGAU d.16.b.C.freundii.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.S.dysenteriae.1.fasta GGAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.K.pneumoniae.fasta GCAGC-NGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.P.shigelloides.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.Y.pestis.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.Y.pseudotuberculosis.fa GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.S.dysenteriae.2.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.E.coli.0157G.GEN.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.E.coli.EDL.GEN.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.E.coli.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.E.coli.K12.GEN.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU h.16.b.E.coli.hlxnum.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU m.16.b.E.coli.mhg.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU s.16.b.E.coli.schem.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.S.typhimurium.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.S.marcescens.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.E.tarda.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.P.vulgaris.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.V.cholerae4.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.V.cholerae5.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.V.cholerae2.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.V.cholerae6.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.V.cholerae.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.V.cholerae.GEN.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.V.parahaemolyticus.fast GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.H.influenzae7.fasta GCAGC-AGUGGGGAAUAUUGCGC-AAUGGGGGGAA--------CCCUGAC d.16.b.H.influenzae8.fasta GCAGC-AGUGGGGAAUAUUGCGC-AAUGGGGGGAA--------CCCUGAC d.16.b.H.influenzae6.fasta GCAGC-AGUGGGGAAUAUUGCGC-AAUGGGGGGAA--------CCCUGAC d.16.b.H.influenz.fasta GCAGC-AGUGGGGAAUAUUGCGC-NAUGGGGGGAA--------CCCUGAC d.16.b.H.influenzae.fasta GCAGC-AGUGGGGAAUAUUGCGC-AAUGGGGGGAA--------CCCUGAC d.16.b.P.multocida.fasta GCAGC-AGUGGGGAAUAUUGCGC-AAUGGGGGGAA--------CCCUGAC d.16.b.P.multocida.GEN.fasta GCAGC-AGUGGGGAAUAUUGCGC-AAUGGGGGGAA--------CCCUGAC d.16.b.X.albilineans.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGCGCAA--------GCCUGAU d.16.b.X.campestris.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGCGCAA--------GCCUGAU d.16.b.X.fastidiosa.GEN.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGCGCAA--------GCCUGAU d.16.b.D.nodosus.fasta GCAGC-AGUGGGGAAUAUUGGAC-NAUGGGGGGAA--------CCCUGAU d.16.b.F.tularensis.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGGGCAA--------CCCUGAU d.16.b.B.parapertussis.fasta GCAGC-AGUGGGGAAUUUUGGAC-AAUGGGGGCAA--------CCCUGAU d.16.b.B.pertussis.fasta GCAGC-AGUGGGGAAUUUUGGAC-AAUGGGGGCAA--------CCCUGAU d.16.b.B.bronchiseptica2.fasta GCAGC-AGUGGGGAAUUUUGGAC-AAUGGGGGCAA--------CCCUGAU d.16.b.u.proteobacterium.fasta GCAGC-AGUGGGGAAUUUUGGAC-AAUGGGCGAAA--------GCCUGAU d.16.b.B.mallei.fasta GCAGC-AGUGGGGAAUUUUGGAC-AAUGGGCGCAA--------GCCUGAU d.16.b.Burkholderia.sp.fasta GCAGC-AGUGGGGAAUUUUGGAC-AAUGGGCGCAA--------GCCUGAU d.16.b.N.meningitidis.MD58.GEN GCAGC-AGUGGGGAAUUUUGGAC-AAUGGGCGCAA--------GCCUGAU d.16.b.N.meningitidis.Z2491.GE GCAGC-AGUGGGGAAUUUUGGAC-AAUGGGCGCAA--------GCCUGAU d.16.b.N.gonorrhoeae.fasta GCAGC-AGUGGGGAAUUUUGGAC-AAUGGGCGCAA--------GCCUGAU d.16.b.C.testosteroni.fasta GCAGC-AGUGGGGAAUUUUGGAC-AAUGGGCGAAA--------GCCUGAU d.16.b.D.desulfuricans.fasta GCAGC-AGUGGGGAAUAUUGCGC-AAUGGGCGAAA--------GCCUGAC d.16.b.M.xanthus.fasta GCAGC-AGUGGGGAAUUUUGCGC-AAUGGGCGAAA--------GCCUGAC d.16.b.D.thermophilus.fasta GCAGC-AGUGGGGAAUCUUGCGC-AAUGCCGGAAA--------CGGUGAC d.16.b.B.burgdorferi.fasta GCAGC-AGCUAAGAAUCUUCCGC-AAUGGGCGGAA--------GCCUGAC d.16.b.B.burgdorferi.GEN.fasta GCAGC-AGCUAAGAAUCUUCCGC-AAUGGGCGAAA--------GCCUGAC d.16.b.B.hermsii.fasta GCAGC-AGCUAAGAAUCUUCCGC-AAUGGGCGAAA--------GC-UGAC d.16.b.S.aurantia.fasta GCAGC-AGCUAAGAAUCUUCCGC-AAUGGGCGAAA--------GCCUGAC d.16.b.T.pallidum.A.fasta GCAGC-AGCUAAGAAUAUUCCGC-AAUGGGCGAAA--------GCCUGAC d.16.b.L.illini.fasta GCAGC-AGUUAAGAAUCUUGCGC-AAUGGAGGCAA--------CUCUGAC d.16.b.L.interrogans.fasta GCAGC-AGUUAAGAAUCUUGCUC-AAUGGGGGGAA--------C-CUGAA d.16.b.C.trachomatis.GEN.fasta GCUGC-AGUCGAGAAUCUUUCGC-AAUGGACGGAA--------GUCUGAC d.16.b.C.trachomatis.L2.fasta GCUGC-AGUCGAGAAUCUUUCGC-AAUGGACGGAA--------GUCUGAC d.16.b.C.muridarum.fasta GCUGC-AGUCGAGAAUCUUUCGC-AAUGGACGGAA--------GUCUGAC d.16.b.C.pneumoniae.AR39.fasta GCUGC-AGUCGAGAAUCUUUCGC-AAUGGACGAAA--------GUCUGAC d.16.b.C.pneumoniae.fasta GCUGC-AGUCGAGAAUCUUUCGC-AAUGGACGAAA--------GUCUGAC d.16.b.C.pneumoniae.J138.fasta GCUGC-AGUCGAGAAUCUUUCGC-AAUGGACGAAA--------GUCUGAC d.16.b.C.pneumoniae.CWL029.fas GCUGC-AGUCGAGAAUCUUUCGC-AAUGGACGAAA--------GUCUGAC d.16.b.C.psittaci.fasta GCUGC-AGUCGAGAAUCUUUCGC-AAUGGACGAAA--------GUCUGAC d.16.b.D.radiodurans.1.fasta GCAGC-AGUUAGGAAUCUUCCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.D.radiodurans.GEN.fasta GCAGC-AGUUAGGAAUCUUCCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.B.fragilis.fasta GCAGC-AGUGAGGAAUAUUGGUC-AAUGGGCGCUA--------GCCUGAA d.16.b.P.gingivalis.fasta GCAGC-AGUGAGGAAUAUUGGUC-AAUGGGCGAGA--------GCCUGAA d.16.b.C.vibrioforme.fasta GCAGC-AGUGAGGAAUAUUGCGC-AAUGGGCGAAA--------GCCUGAC d.16.b.C.jejuni.fasta GCAGC-AGUAGGGAAUAUUGCGC-AAUGGGGGAAA--------CCCUGAC d.16.b.C.jejuni.GEN.fasta GCAGC-AGUAGGGAAUAUUGCGC-AAUGGGGGAAA--------CCCUGAC d.16.b.C.sputorum.fasta GCAGC-AGUAGGGAAUAUUGCUC-AAUGGGGGAAA--------CCCUGAA d.16.b.H.pylori.26695.GEN.fast GCAGC-AGUAGGGAAUAUUGCUC-AAUGGGGGAAA--------CCCUGAA d.16.b.H.pylori.J99.GEN.fasta GCAGC-AGUAGGGAAUAUUGCUC-AAUGGGGGAAA--------CCCUGAA d.16.b.H.pylori2.fasta GCAGC-AGUAGGGAAUAUUGCUC-AAUGGGGGAAA--------CCCUGAA d.16.b.A.capsulatum.fasta GCAGC-AGUGGGGAAUUUUGCGC-AAUGGGGGAAA--------CCGUGAC d.16.b.H.foetida.fasta GCAGC-AGUGGGGAAUUUUGCGC-AAUGGGCGAAA--------GCCUGAC d.16.b.A.globiformis.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGAAA--------GCCUGAU d.16.b.M.luteus.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUNAU d.16.b.Frankia.sp.fasta GCAGC-AGUGGGGAAUAUUGCGC-AAUGGGCGGAA--------GCCUGAC d.16.b.S.bottropensis.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGAAA--------GCCUGAU d.16.b.S.scabiei.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGAAA--------GCCUGAU d.16.b.S.neyagawaensis.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGAAA--------GCCUGAU d.16.b.S.diastatochromogenes.f GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGAAA--------GCCUGAU d.16.b.Streptomyces.sp.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGAAA--------GCCUGAU d.16.b.S.acidiscabies.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGGAA--------GCCUGAU d.16.b.S.griseus.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGAAA--------GCCUGAU d.16.b.S.ornatus.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGAAA--------GCCUGAU d.16.b.S.subrutilus.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGAAA--------GCCUGAU d.16.b.S.bikiniensis.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.S.galbus.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGAAA--------GCCUGAU d.16.b.S.hygroscopicus.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGAAA--------GCCUGAU d.16.b.S.lincolnensis.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGAAA--------GCCUGAU d.16.b.S.coelicolor.fasta GCAGC-AGUGGGGAAUGUUGCAC-AAUGGGCGAAA--------GCCUGAU d.16.b.S.tendae.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGAAA--------GCCUGAU d.16.b.S.ambofaciens.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGAAA--------GCCUGAU d.16.b.S.eurythermus.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGAAA--------GCCUGAU d.16.b.S.nodosus.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGAAA--------GCCUGAU d.16.b.S.sampsonii.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGAAA--------GCCUGAU d.16.b.S.glaucescens.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCUGAAU d.16.b.S.pseudogriseolus.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGAAA--------GCCUGAU d.16.b.S.caelestis.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGAAA--------GCCUGAU d.16.b.S.bluensis.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGAAA--------GCCUGAU d.16.b.S.espinosus.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.S.mashuensis.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGAAA--------GCCUGAU d.16.b.S.rimosus.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.S.limosus.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGAAA--------GCCUGAU d.16.b.S.odorifer.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGAAA--------GCCUGAU d.16.b.S.felleus.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGAAA--------GCCUGAU d.16.b.S.albidoflavus.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGAAA--------GCCUGAU d.16.b.S.gougerotii.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGAAA--------GCCUGAU d.16.b.S.rutgersensis.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGAAA--------GCCUGAU d.16.b.S.intermedius.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGAAA--------GCCUGAU d.16.b.S.thermodiastaticus.fas GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.S.thermoviolaceus.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.S.thermovulgaris.1.fast GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.S.thermovulgaris.2.fast GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.S.macrosporus.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.S.megasporus.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.S.thermolineatus.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.M.tuberculosis.2.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.M.tuberculosis.3.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.M.avium.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.M.leprae.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.M.leprae.GEN.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.M.tuberculosis.CDC1551. GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.M.tuberculosis.GEN.fast GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.N.asteroides.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGNAA--------GCCUGAU d.16.b.R.erythropolis.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGAAA--------GCCUGAU d.16.b.C.diphtheriae.fasta GCAGC-AGUGGGGAAUAUUGCAC-AAUGGGCGCAA--------GCCUGAU d.16.b.A.israelii.fasta GCAGC-AGUGGGGGGUAUUGCAC-AAUGGGCGGAA--------GCCUGAU d.16.b.B.hyodysenteriae.fasta GCAGC-AGCUGAGAAUCUUCCAC-AAUGGACGAAA--------GUCUGAU d.16.b.G.subterranea.fasta GCAGC-AGUGGGGAAUUUUGGAC-AAUGCACGGAA--------GUGUGAU d.16.b.P.miotherma.fasta GCAGC-AGUGGGGAAUAUUGGAC-AAUGGGCGAAA--------GCCUNAU d.16.b.B.andersonii.fasta GCAGC-AGCCAAGAAUAUUCCGC-AAUGGGGGAAA--------CCCUGAC d.16.b.H.aurantiacus.fasta GCAGC-AGCAAGGAAUUUUCGGC-AAUGGGCGCAA--------GCCUGAC d.16.b.Leptospirillium.sp.fast GCAGC-AGUGAGGAAUAUUGCGC-AAUGGGGGCAA--------CCCUGAC d.16.b.A.aeolicus.fasta GCAGC-AGUGGGGAAUCGUGGGC-AAUGGGCGAAA--------GCCUGAC d.16.b.A.pyrophilus.fasta GCAGC-AGUGGGGAAUCGUGGGC-AAUGGGCGAAA--------GCCUGAC d.16.b.T.maritima.fasta GCAGC-AGUGGGGAAUCUUGGAC-AAUGGGGGAAA--------CCCUGAU d.16.b.T.maritima.GEN.fasta GCAGC-AGUGGGGAAUCUUGGAC-AAUGGGGGAAA--------CCCUGAU n.16.b.T.thermophilus.2.num.fa GCAGC-AGUUAGGAAUCUUCCGC-AAUGGGCGCAA--------GCCUGAC s.16.b.T.thermophilus.2.schem. GCAGC-AGUUAGGAAUCUUCCGC-AAUGGGCGCAA--------GCCUGAC d.16.b.T.thermophilus.2.fasta GCAGC-AGUUAGGAAUCUUCCGC-AAUGGGCGCAA--------GCCUGAC s.16.b.T.thermophilus.1.schem. GCAGC-AGUUAGGAAUCUUCCGC-AAUGGGCGCAA--------GCCUGAC n.16.b.T.thermophilus.1.num.fa GCAGC-AGUUAGGAAUCUUCCGC-AAUGGGCGCAA--------GCCUGAC d.16.b.T.thermophilus.1.fasta GCAGC-AGUUAGGAAUCUUCCGC-AAUGGGCGCAA--------GCCUGAC d.16.b.T.aquaticus.fasta GCAGC-AGUUAGGAAUCUUCCGC-AAUGGGCGCAA--------GCCUGAC d.16.b.T.roseum.fasta GCAGC-AGCAGGGAAUCUUCCGC-AAUGGGGGCAA--------CCCUGAC d.16.b.P.marina.fasta GCUGC-AGUCGAGAAUCUUUGGC-AAUGGGCGCAA---------CGUGAC d.16.b.P.staleyi.fasta GCUGC-AGUCGAGAAUCUUCGGC-AAUGGGCGAAA--------GCCUGAC d.16.b.P.Schlesner.fasta GCUGC-AGUCGAGAAUCUUUGGC-AAUGGGGGCAA--------CCCUGAC d.16.b.G.obscuriglobus.1.fasta GCUGC-AGUCGAGGAUCUUCGGC-AAUGGGGGCAA--------CCCUGAC d.16.b.I.pallida.fasta GCUGC-AGUCGAGNAUCUUCGGC-AAUGGGCGAAA--------GCCUGAC d.16.a.P.abyssi.fasta GCAGC-AGGCGCGAAACCUCCGC-AAUGCGGGAAA--------CCGCGAC d.16.a.P.horikoshii.fasta GCAGC-AGGCGCGAAACCUCCGC-AAUGCGGGAAA--------CCGCGAC d.16.a.P.furiosus.fasta GCAGC-AGGCGCGAAACCUCCGC-AAUGCGGGAAA--------CCGCGAC d.16.a.T.celer.fasta GCAGC-AGGCGCGAAACCUCCGC-AAUGCGGGCAA--------CCGCGAC d.16.a.A.fulgidus.fasta GCAGC-AGGCGCGAAACCUCCGC-AAUGCGGGAAA--------CCGCGAC d.16.a.N.equitans.fasta GCACC-AGGGGCGAAACCUCCGC-AAUGCGGGAAA--------CCGUGAC d.16.a.A.pernix.K1.fasta GCACC-AGGCGCGAAAACUCCGC-AAUGCGGGCAA--------CCGUGAC d.16.a.P.occultum.fasta GCACC-AGGCGCGAAACCUCCGC-AAUGCGGGCAA--------CCGUGAC d.16.a.T.tenax.fasta GCAGC-AGGCGCGAAUACUCCGC-AAUGCGGGCAA--------CCGCGAC d.16.a.S.acidocaldarius.fasta GCACC-AGGCGCGAAACGUCCCC-AAUGCGCGAAA--------GCGUGAG d.16.a.S.solfataricus.fasta GCACC-AGGCGCGAAACGUCCCC-AAUGCGCGAAA--------GCGUGAG d.16.a.S.solfataricus.2.fasta GCACC-AGGCGCGAAACGUCCCC-AAUGCGCGGAA--------GCGUGAG d.16.a.M.thermautotrophicus.1. GCAGC-AGGCGCGAAACCUCCGC-AAUGCACGCAA--------GUGCGAC d.16.a.M.thermautotrophicus.2. GCAGC-AGGCGCGAAACCUCCGC-AAUGCACGCAA--------GUGCGAC d.16.a.M.formicicum.fasta GCAGC-AGGCGCGAAACCUCCGC-AAUGCACGAAA--------GUGCGAC d.16.a.M.vannielii.fasta GCAGC-AGGCGCGAAACCUCCGC-AAUGCACGAAA--------GUGCGAC d.16.a.H.marismortui.rrnA.fast GCAGC-AGGCGCGAAACCUUUAC-ACUGCACGACA--------GUGCGAU d.16.a.H.marismortui.rrnB.fast GCAGC-AGGCGCGAAACCUUUAC-ACUGCACGACA--------GUGCGAU d.16.a.Halobacterium.sp.fasta GCAGC-AGGCGCGAAACCUUUAC-ACUGUACGAAA--------GUGCGAU d.16.a.N.bangense.fasta GCAGC-AGGCGCGAAACCUUUAC-ACUGCACGCCA--------GUGCGAU d.16.a.N.innermongoliae.fasta GCAGC-AGGCGCGAAACCUUUAC-ACUGCACGCCA--------GUGCGAU d.16.a.H.volcanii.fasta GCAGC-AGGCGCGAAACCUUUAC-ACUGCACGCAA--------GUGCGAU d.16.a.M.hungatei.fasta GCAGC-AGGCGCGAAAACUUUAC-CAUGCGGGCAA--------CCGUGAU d.16.a.P.torridus.fasta GCAGC-AGGCGCGAAACCUGUGC-AAUGCGCGCAA--------GCGCGAC d.16.a.T.acidophilum.fasta GCAGC-AGGCGCGAAAACUGUGC-AAUGCGCGAAA--------GCGCGAC a.16.e.G.ardeae.fasta -------------------------------------------------- d.16.e.G.intestinalis.fasta -------------------------------------------------- a.16.e.G.muris.fasta -------------------------------------------------- d.16.e.A.bracteata.fasta -------------------------------------------------- d.16.e.Glomus.sp.W3349.fasta CCGCGA---GGAACCAGGACC----UUU-----------------ACUUU d.16.e.S.cerradensis.fasta UGGUAG---GAAACCAGGACC----UUU-----------------ACCUU a.16.e.G.intraradices.fasta UUGCGG---GGAAUUUGGACU----GUU-----------------ACUUU d.16.e.S.culisetae.fasta UAGUAUUUUACUACCAGAACC----UUUU----------------ACCUU a.16.e.P.balamuthi.fasta GAAUGG-GGGGAAUAAGGACUAAAGGUUU----------------ACCUU d.16.e.A.flavus.fasta --GUGG-GGGGAACCAGGACU-----UUU----------------ACUGU d.16.e.T.caries.fasta --GUGUCGGGGAACCAGGAUU-----UUU----------------ACUUU d.16.e.M.circinelloides.fasta GGUUGUUUAUAGUCUCUAGCCAGAUGAUU----------------ACCAU d.16.e.M.racemosus.fasta GGUUGUUUAUAGUCUCUAGCCAGAUGAUU----------------ACCAU d.16.e.R.oryzae.fasta G--UGGUUAGGGUUUU---CUGGACAAUU----------------ACCAU a.16.e.M.edulis.fasta -----CGCCCUU-------------------------------------- a.16.e.P.magellanicus.fasta ------ACCCUU-------------------------------------- b.16.e.E.granulosus.fasta GCGCGCGCUCGCUUGCUGGCCGAUUGGUGAGCUGGCUCGCUCGUUCGCCU d.16.e.D.melanogaster.fasta ----AUGUUCCU-------CCUAUUUAAAAACC----------------- b.16.e.C.koreana.fasta ----UCGUUCAU-------------------------------------- b.16.e.A.australis.fasta ------AUUCCU-------------------------------------- b.16.e.O.utahensis.fasta ACGCCGGCGCGUC------CCGGUCCGCCGAUCCAAUCC----------- b.16.e.A.salina.fasta ----UCGUUCGG-------------------------------------- d.16.e.M.musculus.fasta -----CGCCCCCU------------------------------------- d.16.e.R.norvegicus.fasta -----CGCCCCCU------------------------------------- d.16.e.H.sapiens.fasta -----CGCCCCCU------------------------------------- d.16.e.O.cuniculus.fasta -----CGCCCCCU------------------------------------- d.16.e.X.borealis.fasta -----CGCCUCCC------------------------------------- d.16.e.X.laevis.fasta -----CGCCUCCC------------------------------------- d.16.e.A.castellanii.fasta AGUGGGGACGUCACAGGGGGCUCAUCGUCGUGCGGCGUCAAAACCGUGGC d.16.e.B.mandrillaris.fasta AGUGGGGA----ACCAAAGGUUC-UGUUCCCGC----------CCUCGGG d.16.e.P.falciparum.A.fasta CAAAGAUUCUUUUU-AAAAUCCCCACUUU-UGC----------------- d.16.e.P.falciparum.S.fasta GACAGAAUCUUUUUUAAAAUCUCUUCAAUAUGC----------------- d.16.e.P.vivax.A.fasta AAAUGAUUCUUUUUAAGGACUUUCUUUGC--------------------- d.16.e.P.vivax.O.fasta AAAUGAUUCUUUUUAGGGGUUUCCUUUGU--------------------- d.16.e.P.vivax.S.fasta AAGUGUUUCUUUUUAAAAUCUUCUUUACC--------------------- d.16.e.E.histolytica.fasta GAAGGAAACAAUUCAAGUAAUU---------------------------- d.16.e.I.hoferi.fasta AGUGGGUGCUCUUAAUUGAGUGUCUACU---------------------- d.16.e.Dermocystidium.sp.fasta CGGCGCGUGCUCUUAAUUGUUGUGUGCGUCCGU----------------- d.16.e.S.destruens.fasta UGGCGUGUGCGCUUAAUUGA-GUGUGCGUCG------------------- d.16.e.A.unguiculata.fasta -GGCUAGUGCCAUUAACUUGGUGCUUGUC--------------------- d.16.e.D.grandis.fasta UAGCGGGUGCACUUAGUUGUGUGGCUGKU--------------------- d.16.e.A.macrogynus.fasta AGGAGAUGCGGCUCUUCUGCUU--GUCAGCG------------------- d.16.e.B.emersonii.fasta GGGUGCUCCUUUGGGUUGGCUUUUGCUAGCU------------------- d.16.e.C.albicans.fasta AAUUAGAGUGUUCAAAGCAGGCCU-UUGCUCGAAUAUAUUAGCAUGGAAU d.16.e.S.cerevisiae.fasta AAUUAGAGUGUUCAAAGCAGGCGUAUUGCUCGAAUAUAUUAGCAUGGAAU d.16.e.N.crassa.fasta AAUCAGAUCGCUCAAAGAAGGCCUAUG-CUCGAAUGUACUAGCAUGGAAU d.16.e.P.anserina.fasta AAUUAGAUCGCUUAAAGAAGGCCUAUG-CUCGAAUAGUCUAGCAUGGAAU d.16.e.C.immitis.fasta AAUUAGAGUGUUCAAAGCAGGCCUUUG-CUCGGAUACAUUAGCAUGGAAU d.16.e.L.major.fasta AAGAAGCGUGACUAAAGCAGUCAUUUGACUUGAAUUAGAAAGCAUGGGAU d.16.e.T.cruzi.fasta AAAAAGUGUGACCAAAGCAGUCAUUCGACUUGAAUUAGAAAGCAUGGGAU d.16.e.T.brucei.fasta AAAAAGUGCGACCAAAGCAGUCUGCCGACUUGAAUUACAAAGCAUGGGAU d.16.e.P.carinii.fasta AAUUAGAGUGUUCAAAGCAGGCGUUUG-CUCGAAUACAUUAGCAUGGAAU d.16.e.C.neoformans.fasta UGUAUGCUCUUUACUGGGUGUGCAGG------------------------ d.16.e.Fungus.sp.QPX.fasta CGUAUGCCCUUUACUGGGUGUGCGGU------------------------ d.16.e.U.maydis.fasta ---ACGGCCGCCCUCGGGUGGUC--C------------------------ d.16.e.M.leidyi.fasta CCGCGUGUGCCCUUAACUG-GGUGGGCGY--------------------- d.16.e.T.cystophora.fasta CUUCACAUAUCCUUAACUG-GCUGUGUGU--------------------- d.16.e.M.prolifera.fasta CCCCGACUGCUCUUCACUGCAGUGGUCGG--------------------- d.16.e.P.haeckeli.fasta CCUCUUCUGCUCUUAAUUGAGUGGGAGAG--------------------- d.16.e.E.rotunda.fasta GCGUCUACCG-UUUACUCGGCCGGACGUA--------------------- d.16.e.P.chromatophora.fasta GUGCCUACCGGCUCGUUCGGCAGGGCGC---------------------- d.16.e.A.majus.fasta GCGCUCCUGGCCUYAAUUG-GCCGGGU----------------------- d.16.e.S.indicum.fasta GCGCUCCUGGUCUUAACUG-GCCGGGU----------------------- d.16.e.D.grandiflora.fasta GCGCUCCUGGCCUUAAUUG-GCCGGGU----------------------- d.16.e.Pla.lanceolata.fasta GCGCUCCUGGCCUUAACUG-GCCGGGU----------------------- d.16.e.N.tabacum.fasta GCGCUCCUGGCCUUAAUUG-GCCGGGU----------------------- d.16.e.A.thaliana.fasta ACGCUCCUGGUCUUAAUUG-GCCGGGU----------------------- d.16.e.S.alba.fasta ACGCUCCUGGCCUUAAUUG-GCCGGGU----------------------- d.16.e.S.tuberosum.fasta GCGCUCCUGGCCUUAAUGU-GCCGGGU----------------------- d.16.e.F.x.ananassa.fasta ACGCUCCUGGCCUUAACUG-GCCGGGU----------------------- d.16.e.G.max.fasta GCGCUCCUGUCCUUAACUG-GCCGGGU----------------------- d.16.e.O.sativa.fasta GCGCUCCUGGCCUUAACUG-GCCGGGUU---------------------- d.16.e.Z.mays.fasta GCGCUCCUGGCCUUAACUG-GCCGGGU----------------------- d.16.e.A.verticilliflorum.fast GCGCUUCUGGCCUUAAUUG-GUCGGGU----------------------- d.16.e.G.spirotaenia.fasta GCA-UUGUGGCCUUCAUUG-ACUGGAG----------------------- d.16.e.Staurastrum.sp.M752.fas GCG-UCCUGGACUUCACUG-GCUGGGG----------------------- d.16.e.C.paradoxa.fasta G-GGUGCUGCUCUUAACUGAGUGGCAUU---------------------- d.16.e.G.nostochinearum.fasta G-GCUUCUGCUCUUAAUUGAGUGGGAGU---------------------- d.16.e.G.wittrockiana.fasta C-CUGCCUGCUCUUUACUGGGCCGGGUU---------------------- d.16.e.C.luteoviridis.fasta GGGCUGCUGGGCUUCAUUG--UCCGGCA---------------------- d.16.e.O.longa.fasta UCG-GGUAUUCAUUUACUCGUUUCGGGCUCAG---------------AUA d.16.e.P.weissei.fasta UCU-GAUAUUCAUUUAUUGGUCUCGGGCUCAG---------------AUA d.16.e.C.citrina.fasta UCU-GAUAUUCAUUUAUUGGUCUCGGGCUCAG---------------UUA d.16.e.G.steinii.fasta UCU-GAUAUUCAUUUAUUGGUCUCGGGCUCAG---------------AUA d.16.e.Ple.lanceolata.fasta UCU-GAUAUUCAUUUAUUGGUCUCGGGCUCAG---------------AUA d.16.e.O.quadricornutus.fasta UCU-GCUAUUUAUUUAGUGGUCUCGGGCUCAG---------------AUA d.16.e.S.lemnae.fasta UCU-GAUAUUCAUUUAUUGGUCUCGGGCUCUG---------------AUA d.16.e.S.mytilus.fasta UCU-GAUAUUCAUUUAUUGGUCUCGGGCUCAG---------------AUA d.16.e.E.mobilis.fasta UCUUGGUAUUCAGUUACUGGUUUCGGGCUCAG---------------AUA d.16.e.O.granulifera.1.fasta UCUUGGUAUUCAUUUACUGGUUUCGGGCUCAG---------------AUA d.16.e.O.granulifera.2.fasta UCUUGGUAUUCAUUUACUGGUUUCGGGCUCAG---------------AUA d.16.e.U.gallina.fasta UCU-GGUAUUCAGUUACUGGACUCGGGCUCAG---------------AUA d.16.e.U.pisces.fasta UCU-GGUAUUCAGUUACUGGACUCGGGCUCAG---------------AUA d.16.e.P.lepisma.fasta UCU-GGUAUUCAGUUACUGGACUCGGGCUCAG---------------AUA d.16.e.U.grandis.fasta UCUUGGUAUUCAGUUACUGGUUUCGGGCUCAG---------------AUA d.16.e.B.coli.fasta ACC-----------UACUAGUCUCUGACUG-------------------- d.16.e.E.aediculatus.fasta GUCCGGGAUUGAUUUCUCGGCUUCGGGCGCAGUAUCUUACCAUUUCAAUA d.16.e.T.thermophila.fasta AAUCGGCCUUCACUGGUUCGACUUAGGGAGUA--------------AACA d.16.e.Bangia.sp.NWT.fasta GUGUGUAGAGACUUGUCU--CUGCGCGUUUAC------------------ d.16.e.Bangia.sp.VIS7.fasta GGCCGUGGGGACUUCACUGUCUCUGCGUCACC------------------ d.16.e.E.carnea.fasta GUGUGUGGGCUCUUCACUGAGUCUGCG----------------------- d.16.e.R.parvula.fasta GUGCGUGGGCGCUUCACUGGGUCUGCG----------------------- d.16.e.C.coeruleus.fasta AGGGGUGUGCUCUUAACUGAGUGUGCU----------------------- d.16.e.P.aerugineum.1.fasta GCGGUGCUGGCAUUAAGUUGUUGGUAG----------------------- d.16.e.R.maculata.fasta UCCUCUGCACUCUUUACUGAGUCGGAU----------------------- d.16.e.A.ambigua.fasta CCAGUGCUGGCAUUUGGUUGU-CGGUC----------------------- d.16.e.A.baicalensis.fasta CCAGUGUUGGCAUUCAGUUGU-UGGGC----------------------- d.16.e.S.nipponica.fasta CCUGUG-UGGCAUUAAGUUGU-CGGGC----------------------- d.16.e.C.radiatus.fasta UCUGUC-UGGCAUUAGGUUGU-CGGGC----------------------- d.16.e.C.criophilum.fasta CC-AUAGUGGCAUUAAGUUGU-UGGUG----------------------- d.16.e.A.capitellata.fasta -CCUGUGUGGCAUUAGGUUGU-CGUGC----------------------- d.16.e.S.pupula.fasta -UCUGUGUGGCAUUAGGUUGU-CGUGC----------------------- d.16.e.T.antarctica.fasta -UCUGUGUGGCAUUAAGUUGU-CGUGC----------------------- d.16.e.E.triangulatum.fasta ACCUGUGUGGCAUUAGGUUGU-CGUGC----------------------- d.16.e.A.bongranii.fasta -AGUGGGUGGCAUUAGGUUGU-CGCCU----------------------- d.16.e.Pseudogomphonema.sp.fas -CCUGUGUGGCAUUAGGUUGU-CGUGC----------------------- d.16.e.D.tenue.fasta -CCUGUGUGGCAUUAAGUUGU-CGUGC----------------------- d.16.e.G.marina.fasta -UUUGUGUGGCAUUAAGUUGU-CGUGC----------------------- d.16.e.Thalassionema.sp.fasta -CCUGUGUGGCAUUAGGUUGU-CGUGC----------------------- d.16.e.R.belgicae.fasta -UCUGUGUGGCAUUGAGUUGU-CGUGC----------------------- d.16.e.Undatella.sp.fasta -CCUGUGUGGCAUUAGGUUGU-CGUGC----------------------- d.16.e.C.belgica.fasta -UUUGUCUGGCAUUAAGUUGU-CGGGC----------------------- d.16.e.O.sinensis.fasta -CCUGUCUGGCAUUAGGUUGU-CGGGC----------------------- d.16.e.D.brightwellii.fasta -CCUGUCUGGCAUUAAGUUGU-CGGGC----------------------- d.16.e.L.undulatum.fasta -CUUGUCUGGCAUUAAGUUGU-CGGGC----------------------- d.16.e.T.eccentrica.fasta -CCUGUUUGGCAUUAAGUUGU-CGGGC----------------------- d.16.e.T.pseudonana.fasta -CCUGUUUGGCAUUAAGUUGU-CGGGC----------------------- d.16.e.S.costatum.fasta -CCUGUUUGGCAUUAAGUUGU-CGGGC----------------------- d.16.e.P.laevis.fasta -CUCACCUGGCAUUAGGUUGU-CGGGU----------------------- d.16.e.L.borealis.fasta ACCGAUCUGGCAUUAGGUUGU-UGGAUUUU-------------------- d.16.e.P.pseudodenticulata.fas GCCAGUCUGGCAUUAAGUUGU-CGGGU----------------------- d.16.e.B.mediterranea.fasta -CUUGUCUGGCAUUAGGUUGU-CGGGCU---------------------- d.16.e.B.pacifica.fasta -CUUGUCCGCCAUUAAGUUGUGUGGGCU---------------------- d.16.e.L.minuta.fasta -CUUUUCUUGCAUUAAUUUGU-AGGGAU---------------------- d.16.e.L.danicus.fasta -CCGUCGUGGCAUUAGGUUGU-CGUGA----------------------- d.16.e.Chaetoceros.sp.fasta --CUUCUUGGUAUUAAGUUAU-CGAGGA---------------------- d.16.e.A.invadans.fasta GCCUUUCUGCCAUUGAGUUGG-UGGUUG---------------------- d.16.e.L.giganteum.fasta GUUCUUCUGCCAUUAAGUUGG-UGGUUG---------------------- d.16.e.M.varians.fasta -AUAAAAUAGCAUUAAUUUGU-UGUUUUGU-------------------- d.16.e.B.hominis.fasta ---UAGUGGGUAUUCAGUUACUUACUA----------------------- d.16.e.P.marinus.fasta UCGUG--CUCACGUACUUAACUGUGCGUU--------------------- d.16.e.T.gondii.fasta UC-------UCCACACUUCAUUGUGUG----------------------- d.16.e.A.fundyense.fasta GU--A--CAACUGCACUUGACUGUGUG----------------------- d.16.e.B.bigemina.fasta U------------------------------------------------- d.16.e.B.canis.fasta UG---------GC------------------------------------- d.16.e.Babesia.sp.OKD.fasta GG---------GG------------------------------------- d.16.e.B.microti.1.fasta GG---------UUCCCUUCG--GGGUU----------------------- d.16.e.B.microti.2.fasta GG---------UGCCUUC----GGGUA----------------------- d.16.e.B.microti.3.fasta GG---------UAUCCUUAAUUGGUUA----------------------- d.16.e.B.microti.4.fasta GG---------UGCCUUC----GGGUA----------------------- d.16.e.B.microti.5.fasta GG---------UGCCUUC----GGGUA----------------------- d.16.e.B.rodhaini.fasta AG---------UGC--------GCAAG----------------------- d.16.e.B.gibsoni.fasta AU---------UUGGGCCUC--GGCCC----------------------- d.16.e.B.bovis.fasta -------------------------------------------------- d.16.e.J.libera.fasta ACUGC--GAGCCGCCCGUGCUUCACGGCC--------------------- d.16.e.R.americana.fasta AUUGCUGGAGCCGUUCCUCCUACG-GAGC--------------------- d.16.e.B.ostreae.fasta CCGGUCUGGCCAUUUAAUUGGUCGGGC----------------------- d.16.e.A.dasyae.fasta CACUGUCGCGG-CG-----------UGU---------------------- d.16.e.A.hermannii.fasta CACUGUCGCGG-CG-----------UGU---------------------- d.16.e.N.helminthoides.fasta CACUGUCGCGG-CU-----------UGU---------------------- d.16.e.B.gelatinosum.fasta AACUGUUGCGGGUG-----------UGC---------------------- d.16.e.N.tortuosa.fasta CAUUGUCGCUG-CG-----------UGU---------------------- d.16.e.T.hispida.fasta AAUUGUUGCUG-CG-----------CGC---------------------- d.16.e.T.violacea.4.fasta AAUUGUUGCUG-CG-----------UGC---------------------- d.16.e.T.violacea.1.fasta GAUUGUUGCUG-CG-----------GGU---------------------- d.16.e.T.violacea.2.fasta CAUUGUUGCUG-CG-----------GGU---------------------- d.16.e.N.shawii.fasta CAUUGUCGCUG-CG-----------UGU---------------------- d.16.e.B.investiens.fasta UGCUGUCGCGG-UG-----------UGU---------------------- d.16.e.B.macrosporum.fasta AAUUGUUGCGGGCG-----------UGC---------------------- d.16.e.A.plicata.fasta UACUGUCGCGCGUU-----------CG----------------------- d.16.e.C.officinalis.fasta UAUUGUCGAACGU---------CCCUAC---------------------- d.16.e.R.carriebowensis.fasta UAGUGUCGAACGUGUUGGGUUUCGCUGCUUUGGCGUUCACGC-------- d.16.e.B.hamifera.fasta CAUUACAUUGCACU-----------AGU---------------------- d.16.e.G.vagum.fasta UAUUGCCUUGC-UA-----------AGU---------------------- d.16.e.C.crispus.fasta CACUGCUUCAUUGU-----------GGU---------------------- d.16.e.H.plana.fasta AACCGCUUCGC-UA-----------GGU---------------------- d.16.e.R.leptophylla.fasta UACUGCAUCGC-UA-----------GGU---------------------- d.16.e.P.pulvinata.fasta CACUGCAUUGU-UA-----------GGU---------------------- d.16.e.C.rubrum.fasta UAUUGUCACUCCUU-----------UGU---------------------- d.16.e.Gracilariopsis.sp.fasta GAGUGCGCUGC-CA-----------UGC---------------------- d.16.e.B.moritziana.fasta UAUUGUAUUGC-UG-----------CAU---------------------- d.16.e.H.rubra.fasta AAGCGGCUUUGCUC-----------CGG---------------------- d.16.e.D.grisea.fasta GAGUGU-GCAAGUG------------------------------------ d.16.e.N.fowleri.fasta GCCUCGUAUUCACUCGUCCACGGUUCAUCC-------------------- d.16.e.N.gruberi.fasta GCUACGUACUUACUUA-CCACGGUUCAUCC-------------------- a.16.e.Hexamita.sp.fasta -------------------------------------------------- d.16.e.T.foetus.fasta -------------------------------------------------- d.16.e.A.khaliulini.fasta -------------------------------------------------- d.16.e.E.aedis.fasta -------------------------------------------------- d.16.e.A.connecticus.fasta -------------------------------------------------- d.16.e.I.barri.fasta -------------------------------------------------- d.16.e.A.ferocious.fasta -------------------------------------------------- d.16.e.Amblyospora.sp.fasta -------------------------------------------------- d.16.e.C.lunata.fasta -------------------------------------------------- d.16.e.P.anophelis.fasta -------------------------------------------------- d.16.e.Hazardia.sp.fasta -------------------------------------------------- d.16.e.H.milleri.fasta -------------------------------------------------- d.16.e.P.simulii.fasta -------------------------------------------------- d.16.e.W.palustris.fasta -------------------------------------------------- d.16.e.Nosema.sp.03.fasta -------------------------------------------------- d.16.e.Nosema.sp.05.fasta -------------------------------------------------- d.16.e.Endoreticulatus.sp.fast -------------------------------------------------- d.16.e.Nosema.sp.02.fasta -------------------------------------------------- d.16.e.N.spodopterae.fasta -------------------------------------------------- d.16.e.N.trichoplusiae.fasta -------------------------------------------------- d.16.e.N.bombycis.27.fasta -------------------------------------------------- d.16.e.N.bombycis.02.fasta -------------------------------------------------- d.16.e.V.imperfecta.fasta -------------------------------------------------- d.16.e.N.furnacalis.fasta -------------------------------------------------- d.16.e.Microsporidium57864.fas -------------------------------------------------- d.16.e.Vairimorpha.sp.C21.fast -------------------------------------------------- d.16.e.N.oulemae.fasta -------------------------------------------------- d.16.e.N.necatrix.fasta -------------------------------------------------- d.16.e.V.necatrix.fasta -------------------------------------------------- d.16.e.N.apis.fasta -------------------------------------------------- d.16.e.O.occidentalis.fasta -------------------------------------------------- d.16.e.Microsporidium.sp.DP119 -------------------------------------------------- d.16.e.V.corneae.fasta -------------------------------------------------- d.16.e.A.michaelis.fasta -------------------------------------------------- d.16.e.T.contejeani.fasta -------------------------------------------------- d.16.e.E.hellem.fasta -------------------------------------------------- d.16.e.Encephalitozoon.sp.fast -------------------------------------------------- d.16.e.E.cuniculi.fasta -------------------------------------------------- d.16.e.O.colligata.fasta -------------------------------------------------- d.16.e.E.salmonis.fasta -------------------------------------------------- d.16.e.N.salmonis.fasta -------------------------------------------------- d.16.e.Enterocytozoonidae.sp.f -------------------------------------------------- d.16.e.E.bieneusi.fasta -------------------------------------------------- d.16.e.B.algerae.fasta -------------------------------------------------- d.16.e.T.solenopsae.fasta -------------------------------------------------- d.16.e.V.acridophagus.fasta -------------------------------------------------- d.16.e.Bacillidium.sp.fasta -------------------------------------------------- d.16.e.P.cristatellae.fasta -------------------------------------------------- d.16.e.Pleistophora.sp.fasta -------------------------------------------------- d.16.e.O.operophterae.fasta -------------------------------------------------- d.16.e.F.magnivora.fasta -------------------------------------------------- d.16.e.G.atherinae.fasta -------------------------------------------------- d.16.e.Ichthyosporidium.sp.fas -------------------------------------------------- d.16.e.L.acerinae.fasta -------------------------------------------------- d.16.e.H.anguillarum.fasta -------------------------------------------------- d.16.e.P.mirandellae.fasta -------------------------------------------------- d.16.e.T.hominis.fasta -------------------------------------------------- d.16.e.V.culicis.fasta -------------------------------------------------- d.16.e.P.hippoglossoideos.fast -------------------------------------------------- d.16.e.Microgemma.sp.fasta -------------------------------------------------- d.16.e.S.lophii.fasta -------------------------------------------------- d.16.e.Pleistophora.sp.LS.fast -------------------------------------------------- d.16.e.D.gammarellum.fasta -------------------------------------------------- d.16.e.M.prosopium.fasta -------------------------------------------------- d.16.e.A.scoticae.fasta -------------------------------------------------- d.16.e.P.whitei.fasta -------------------------------------------------- a.16.c.C.coccineum.fasta GGAGCAAUGCCGCGUGGAGGUAAAAGGCUUAUGGGU--CAUGAACUUCUU a.16.c.C.ruber.fasta GGAGCAAUGCCACGUGAAGGUAAAAGGCCCCUGGGU--CAUGAACUUCUU d.16.c.N.tabacum.fasta GGAGCAAUGCCGCGUGGAGGUAGAAGGCCCACGGGU--CGUGAACUUCUU d.16.c.S.oleracea.fasta GGAGCAAUGCCGCGUGGAGGCAGAAGGCCCACGGGU--CGUGAACUUCUU d.16.c.Z.mays.fasta GGAGCAAUGCCGCGUGGAGGUGGAAGGCCUACGGGU--CGUCAACUUCUU d.16.c.M.polymorpha.fasta GGAGCAAUGCCGCGUGGAGGUAGAAGGCUCACGGGU--CGUAAACUCCUU d.16.c.R.communis.fasta GGAGCAAUGCCGCGUGGAGGUAGAAGGCCUACGGGU--CGUGAACUUCUU d.16.c.C.vulgaris.fasta GGAGCAAUGCCGCGUGAAGGAUGAAGGCCUAUGGGU--UGUAAACUUCUU d.16.c.P.wickerhamii.fasta GGAGCAAUGCCGCGUGAAGGAUGACGGCCUAUGGGU--UGUAAACUUCUU d.16.c.P.minor.fasta GGAGCAAUACCGCGUGAAGGAUGAAGGCCUGUGGGU--UGUAAACUUCUU d.16.c.N.olivacea.fasta GGAGCAAUGCCGCGUGGAGGAUGAAGGCCCAUGGGU--UGUAAACUCCUU d.16.c.P.parkeae.fasta GGAGCAAUGCCGCGUGGAGGAAGACGGCCCGUGGGU--UGUAAACUCCUU d.16.c.C.reinhardtii.fasta GGAGCAAUGCCGCGUGCAGGAAGAAGGCCUGUGGGU--CGUAAACUGCUU b.16.m.A.castellanii.fasta CGAGUAAUGUUACGUGGGUGAUCAGAAGGCUUAAUUGCCGUAAAACUCGU d.16.c.P.thurberi.fasta AGAGUAAUAUCGAGUU-----------AACUCAAAUG------AGUUUAU b.16.m.C.crispus.fasta CCAGCUAAACCACAAGUGUGAU---GAAAGUAAAAUACUUU--AAAACAC d.16.c.T.gondii.fasta AGAGCGUCAUCACAUGAAGGAGGAAGGCCUAUAAAGGUUGUAAACUUCUU b.16.m.N.crassa.fasta CAAAU-AGGUACAGCAGU-GAGGAAUCUUGGUCAAUGGGCCCACGC-CUG b.16.m.P.anserina.fasta CAAACGAAGUACAGCAGU-GAGGAAUAUUGGUCAAUGGCCUAACGG-CUG b.16.m.P.chrysogenum.fasta CUUUU-AUGUACAGCAGU-GAGGAAUAUUGGUCAAUGG-CCGAAAC-GUG b.16.m.E.nidulans.fasta CGUUU-UAGUACAGCAGU-GAGGAAUAUUGGUCAAUGG-CCGAAAG-GCG b.16.m.S.cerevisiae.fasta CCAGUUACUUAUUAGGAU-GA--UAUAUAAAAAUAUUUUAUUUUAU-UUA b.16.m.W.saturnus.m.fasta CCAGUUAUCUAUAAUAAU-GA--AAUUUCAA------UUUUCUUAU-UUA b.16.m.P.minor.fasta CUAGUGA--UAUAAAAA--AA--AGUUUAAG------------UAU-UUA d.16.c.P.falciparum.fasta AAAGUAAUAUUUCUUUUA-GG--AAGACAGUA----------UUAU-UAA d.16.c.B.bovis.fasta AGAGUGACGUCGUGUGA--AA--AAGAUGAA-------------AU-AAA b.16.m.T.pyriformis.fasta UCAACCACAUACGGGUAU-GA--AAACUACCCUAU------------CUA d.16.m.S.sinuspaulianus.fasta AUGGCCACAU-UGGGAAU-GA--AAUCUCCCAAGUA-------GUU-UUA b.16.m.P.tetraurelia.fasta CCAGCAAAUUGAUGUUGCGGAAGAAAAUAAGUGAGGGUGCCUUGCA-GCA b.16.m.D.discoideum.fasta CCAGCUACACUGAGUGAGGGAAGAAGUAAAGCG----------------- d.16.m.P.polycephalum.fasta AAAAGUUUCCGUAAAAAGAGAUUUUUAUCUGUGUCUUCUGUAGCGUGCCU b.16.m.P.littoralis.fasta GCAGCAAGACUUGGUGAGGGAUUGAAGGC------------------UUA b.16.m.P.wickerhamii.fasta CCAGCUAUACGGCAUGAGUGUAGAAGACUGUAUUGGUUGUAAAGCU-CUU d.16.c.H.africana.fasta GGGGCAAUGUUGCGUGAAGGCAGAAGGCCGAUAGGU--UGUAAACUUCUU d.16.c.C.fragile.fasta GGAGCAAUAUCGCGUGAAGGA-UGACGGCCUGUGGGUUGUAAACUUCUUU d.16.c.C.sertularioides.fasta GGAGCAAUGCCGCGUGGAGGAAUGAAGGCUCUUGGGUCGUAAACUCCUUU d.16.c.C.humicola.fasta GGAGCAAUGCCGCGUGGAGGAAGAAGGUCUAUUGAU--UGUAAACUCCUU d.16.c.P.uvella.fasta GAAGCAAUGCCGCGUGGAGGAUUAAGAUCUAUUGAU--UGUAAACUCCUU a.16.c.G.nostochinearum.fasta GGAGCAAUACCGCGUGAGGGAAGAAGG-CCUGUGGG-UUGUAAACCUCUU a.16.c.G.wittrockiana.fasta GGAGCAAUACCGCGUGAGGGAUGAAGG-CCUUUGGG-UUGUAAACCUCUU d.16.c.C.paradoxa.fasta GGAGCAAUACCGCGUGAGGGAAGAAGG-CCUGUGGG-UUGUAAACCUCUU d.16.y.C.paradoxa.fasta GGAGCAAUACCGCGUGAGGGAAGACGG-CCUGUGGG-UUGUAAACCUCUU d.16.c.Cryptomonas.sp.fasta GGAGCAAUACCGCGUGAGGGAUGAAGG-CCUGUGGG-UUGUAAACCUCUU d.16.c.P.palmata.fasta GGAGCAAUACCGCGUGAGGGAAGAAUG-CCCGUGCG-UUGUAAACCUCUU d.16.c.H.akashiwo.fasta AGAGCAAUACCGCGUGAGGGAUGACAGUCCUAUGGA-UUGUAAACCUCUU d.16.c.S.pseudocostatum.fasta GGAGCAAUACCGCGUGAGGGAAGACUG-CCUAUGGG-UUGUAAACCUCUU d.16.c.P.littoralis.fasta AGAGCAAUACCGCGUGAGGGAAGAAAGCCCACAGGG-UUGUAAACCUCUU d.16.c.C.caldarium.fasta GGAGCAAUACCGUGUGAGGGAUGAAGG-CCUGUGGG-UUGUAAACCUCUU a.16.c.E.huxleyi.fasta GGAGCAAUACCGCGUGAGGGAUGAAGG-AUUUUGGU-CUGUAAACCUCUU d.16.c.E.gracilis.fasta GGAGCAAUACCGCGUGAAGGAAGACGG-CCUUUGGG-UUGAAAACCUCUU d.16.b.Anabaena.sp.fasta GGAGCAAUACCGCGUGAGGGAGGAAGGCUCUUGGGU--UGUAAACCUCUU d.16.b.Chlorogloeopsis.PCC7518 GGAGCAAUACCGCGUGAGGGAGGAAGGCCCUUGGGU--UGUAAACCUCUU d.16.b.Synechococcus.sp.fasta GGAGCAACGCCGCGUGGGGGAGGAAGGUUUUUGGAC--UGUAAACCCCUU d.16.b.Synechocystis.PCC6803.G GGAGCAAUACCGCGUGAGGGAGGAAGGUCCUUGGAU--UGUAAACCUCUU d.16.b.O.agardhii.fasta GGAGCAAGACCGCGUGGGGGAGGAAGGUUCUUGGAU--UGUCAACCCCUU d.16.b.Pleurocapsa.7516.fasta GGAGCAAUACCGCGUGAGGGAGGAAGGCUUUUGGGU--UGUAAACCUCUU d.16.b.M.aeruginosa.fasta GGAGCAACGCCGCGUGAGGGAGGAAGGUCUUUGGAU--UGUAAACCUCUU b.16.m.C.reinhardtii.fasta CCAGAUGCUGCUUAC----------------------------------- d.16.m.C.eugametos.fasta CCAGAG------CAU----------------------------------- b.16.m.M.senile.fasta ACAGAGAGGACACAU----------------------------------- d.16.b.S.pneumoniae.fasta CGAGCNACGCCGCGUGAGUGAAGAAGGUUUUCG--GAUCGUNAAGCUCUG d.16.b.S.pyogenes.fasta CGAGCAACGCNGCGUGAGUGAAGAAGGUUUUCG--GAUCGUAAAGCUCUG d.16.b.B.anthracis.fasta GGAGCAACGCCGCGUGAGUGAUGAAGGCUNUCG--GGUCGUAAAACUCUG d.16.b.B.cereus.1.fasta GGAGCAACGCCGCGUGAGUGAUGAAGGCUUUCG--GGUCGUAAAACUCUG d.16.b.E.faecalis.fasta CGAGCAACGCCGCGUGAGUGAAGAAGGUUUUCG--GAUCGUAAAACUCUG d.16.b.E.faecium2.fasta CGAGCAACGCCGCGUGAGUGAAGAAGGUUUUCG--GAUCGUAAAACUCUG d.16.b.L.monocytogenes.fasta GGAGCAACGCCGCGUGUAUGAAGAAGGUUUUCG--GAUCGUAAAGUACUG d.16.b.B.subtilis.fasta GGAGCAACGCCGCGUGAGUGAUGAAGGUUUUCG--GAUCGUAAAGCUCUG d.16.b.B.subtilis.GEN.fasta GGAGCAACGCCGCGUGAGUGAUGAAGGUUUUCG--GAUCGUAAAGCUCUG d.16.b.B.halodurans.fasta GGAGCAACGCCGCGUGAGUGAUGAAGGUUUUCG--GAUCGUAAAACUCUG d.16.b.S.aureus.fasta GGAGCAACGCCGCGUGAGUGAUGAAGGUCUUCG--GAUCGUAAAACUCUG d.16.b.S.aureus.GEN.fasta GGAGCAACGCCGCGUGAGUGAUGAAGGUCUUCG--GAUCGUAAAACUCUG d.16.b.L.lactis.GEN.fasta CGAGCAACGCCGCGUGAGUGAAGAAGGUUUUCG--GAUCGUAAAACUCUG d.16.b.S.pyogenes.GEN.fasta CGAGCAACGCCGCGUGAGUGAAGAAGGUUUUCG--GAUCGUAAAGCUCUG d.16.b.L.acidophilus.fasta GGAGCAACGCCGCGUGAGUGAAGAAGGUUUUCG--GAUCGUAAAGCUCUG d.16.b.M.capricolum.fasta GAAGCAAUGCCGCGUGAGUGAUGACGGCCUUCG--GGUUGUAAAGCUCUG d.16.b.M.mycoides.fasta GAAGCAAUGCCGCGUGAGUGAUGACGGCCUUCG--GGUUGUAAAGCUCUG d.16.b.E.rhusiopathiae.fasta CGAGCAACGCCGCGUGAGUGAAGACGGCCUUCG--GGUUGUAAAGCUCUG d.16.b.C.innocuum.fasta CGAGCAAUGCCGCGUGAGUGAAGAAGGUCUUCG--GAUCGUAAAGCUCUG d.16.b.M.genitalium.fasta GGAGCAAUGCCGCGUGAACGAUGAAGGUCUUUU-UGAUUGUAAAGUUCUU d.16.b.M.pneumoniae.GEN.fasta GGAGCAAUGCCGCGUGAACGAUGAAGGUCUUUA-AGAUUGUAAAGUUCUU d.16.b.M.pneumoniae.fasta GGAGCAAUGCCGCGUGAACGAUGAAGGUCUUUA-AGAUUGUAAAGUUCAU d.16.b.M.gallisepticum.fasta GGAGCAAUGCCGCGUGAACGAUGAAGGUCUUUUUAGAUUGUAAAGUUCUU d.16.b.U.urealyticum.fasta GAAGCAAUGCCGCGUGAACGAUGAAGGUCUUAU-AGAUUGUAAAGUUCUU d.16.b.U.urealyticum.GEN.fasta GAAGCAAUGCCGCGUGAACGAUGAAGGUCUUAU-AGAUUGUAAAGUUCUU d.16.b.M.hyopneumoniae.fasta GGAGCGACACAGCGUGCAGGAUGAAG-UCUUUC-GGGAUGUAAACUGCUG d.16.b.F.necrophorum.fasta CCAGCAAUUCUGUGUGCACGAUGACGUUUUUCG--GAAUGUAAAGUGCUU d.16.b.F.nucleatum.fasta CCAGCAAUUCUGUGUGCACGAUGACGUUUUUCG--GAAUGUAAAGUGCUU d.16.b.S.moniliformis.fasta CCAGCAAUUCUGUGUGCACGAAGAAGGUUUUCG--GAUUGUAAAGUGCUU d.16.b.C.botulinum.F.fasta GCAGCAACGCCGCGUGGGUGAUGAAGGUCUUCG--GAUUGUAAAGCCCUG d.16.b.C.tetani.fasta GCAGCAACGCCGCGUGGGUGAUGAAGGUUUUCG--GAUCGUAAAACCCUG d.16.b.C.perfringens.fasta GCAGCAACGCCGCGUGAGUGAUGAAGGUUUUCG--GAUCGUAAAGCUCUG d.16.b.C.difficile.fasta GCAGCAACGCCGCGUGAGUGAUGAAGGCCUUCG--GGUCGUAAAACUCUG d.16.b.E.brachy.fasta GCAGCAACGCCGCGUGAACGAUGAAGGCCUUUG--GGUCGUAAAGUUCUG d.16.b.Epulopiscium.sp.fasta GCAGCGACGCCGCGUGAUUGAUGAAGGCUUUCG--AGUCGUAAAGAUCUA d.16.b.H.chlorum.fasta GGAGCAAUGCCGCGUGGGGGAUGAAGGUCUUCG--GAUUGUAAACCCUUG b.16.m.G.max.fasta CCAGCAAUAUCGCGUGAGUGAAGAAGGGCAAUGCCGCUUGUAAAGCUCUU b.16.m.O.berteriana.fasta CCAGCAAUAUCGCGUGAGUGAAGAAGGGCAAUGCCGCUUGUAAAGCUCUU b.16.m.S.cereale.fasta CCAGCAAUAUCGCGUGAGUGAAGAAGGGCAAUGCCGCUUGUAAAGCUCUU b.16.m.T.aestivum.fasta CCAGCAAUAUCGCGUGAGUGAAGAAGGGCAAUGCCGCUUGUAAAGCUCUU d.16.m.Z.mays.fasta CCAGCAAUAUCGCGUGAGUGAAGAAGGGCAAUGCCGCUUGUAAAGCUCUU b.16.m.M.polymorpha.fasta CCAGCAAUAUGGCGUGAGUGAAGAAGGGCAAUGCAGCUUGUAAAGCUCUU b.16.m.N.olivacea.fasta CCAGCUAUAUGGCGUGAGUGAUGAAGG-CAAUUUCUGUUGUAAAGCUCUU d.16.b.G.liquefaciens.fasta CCAGCAAUGCCGCGUGUGUGAAGAAGGUC--UUCGGAUUGUAAAGCACUU d.16.b.B.japonicum.fasta CCAGCCAUGCCGCGUGAGUGAUGAAGGCC--CUAGGGUUGUAAAGCUCUU d.16.b.R.acidophilus.fasta CCAGCCAUGCCGCGUGAGUGAUGACGGCC--CUAGGGUUGUAAAGCUCUU d.16.b.A.caulinodans.fasta CCAGCCAUGCCGCGUGAGUGAUGAAGGCC--UUAGGGUUGUAAAGCUCUU d.16.b.B.quintana.fasta CCAGCCAUGCCGCGUGAGUGAUGAAGGCC--CUAGGGUUGUAAAGCUCUU d.16.b.M.loti.fasta CCAGCCAUGCCGCGUGAGUGAUGAAGGCC--CUAGGGUUGUAAAGCUCUU d.16.b.A.tumefaciens.fasta CCAGCCAUGCCGCGUGAGUGAUGAAGGCC--UUAGGGUUGUAAAGCUCUU d.16.b.B.bacilliformis.fasta CCAGCCAUGCCGCGUGAGUGAUGAAGGCC--UUAGGGUUGUAAAGCUCUU d.16.b.B.henselae.fasta CCAGCCAUGCCGCGUGAGUGAUGAAGGCC--CUAGGGUUGUAAAGCUCUU d.16.b.B.melitensis.fasta CCAGCCAUGCCGCGUGAGUGAUGAAGGCC--CUAGGGUUGUAAAGCUCUU d.16.b.R.orientis.fasta CCAGCCAUGCCGCGUGAGUGAUGAAGGCC--CUAGGGUUGUAAAGCUCUU d.16.b.Methylobacterium.sp.fas CCAGCCAU-CCGCGUGAGUGAUGAAGGCC--UUAGGGUUGUAAAGCUCUU d.16.b.R.bellii.fasta CCAGCAAUACCGAGUGAGUGAUGAAGGCC--CUAGGGUUGUAAAGCUCUU d.16.b.R.felis.URRWXCal2.fasta CCAGCAAUACCGAGUGAGUGAUGAAGGCC--CUAGGGUUGUAAAGCUCUU d.16.b.R.prowazekii.fasta CCAGCAAUACCGAGUGAGUGAUGAAGGCC--UUAGGGUUGUAAAGCUCUU d.16.b.R.prowazekii.GEN.fasta CCAGCAAUACCGAGUGAGUGAUGAAGGCC--UUAGGGUUGUAAAGCUCUU d.16.b.R.rickettsii.fasta CCAGCAAUACCGAGUGAGUGAUGAAGGCC--UUAGGGUUGUAAAGCUCUU d.16.b.A.calcoaceticus.fasta CCAGCCAUGCCGCGUGUGUGAAGAAGGCC--UUUUGGUUGUAAAGCACUU d.16.b.P.pacificensis.fasta CCAGCCAUGCCGCGUGUGUGAAGAAGGCC--UUUUGGUUGUAAAGCACUU d.16.b.C.marismortui.fasta CCAGCCAUGCCGCGUGUGUGAAGAAGGCU--UUCGGGUUGUAAAGCACUU d.16.b.H.halodenitrificans.fas CCAGCCAUGCCGCGUGUGUGAAGAAGGCU--UUCGGGUUGUAAAGCACUU d.16.b.P.aeruginosa.fasta CCAGCCAUGCCGCGUGUGUGAAGAAGGUC--UUCGGAUUGUAAAGCACUU d.16.b.P.aeruginosa.GEN.fasta CCAGCCAUGCCGCGUGUGUGAAGAAGGUC--UUCGGAUUGUAAAGCACUU d.16.b.Pseudomonas.sp.fasta CCAGCCAUGCCGCGUGUGUGAAGAAGGUC--UUCGGAUUGUAAAGCACUU d.16.b.P.putida.fasta CCAGCCAUGCCGCGUGUGUUAAGAAGGUC--UUCGGAUUGUAAAGCACUU d.16.b.C.burnetii.fasta CCAGCAAUGCCGCGUGUGUGAAGAAGGCC--UUCGGGUUGUAAAGCACUU d.16.b.M.capsulatus.fasta CCAGCAAUGCCGCGUGUGUGAAGAAGGCC--UGAGGGUUGUAAAGCACUU d.16.b.L.pneumophila.1.fasta CCAGCAAUGCCGCGUGUGUGAAGAAGGCC--UNAGGGUUGUAAAGCACUU d.16.b.L.pneumophila.2.fasta CCAGCAAUGCCGCGUGUGUGAAGAAGGCC--UGAGGGUUGUAAAGCACUU d.16.b.A.vinosum.fasta CCAGCAAUGCCGCGUGGGUGAAGACGGCC--UGCGGGUUGUAAAGCCCUU d.16.b.Beggiatoa.sp.fasta CCAGCAAUACCGCGUGUGUGAAGAAGGCC--UGCGGGUUGUAAAGCACUU d.16.b.A.hydrophila.fasta GCAGCCAUGCCGCGUGUGUGAAGAAGGCC--UUCGGGUUGUAAAGCACUU d.16.b.S.putrefaciens.fasta GCAGCCAUGCCGCGUGUGUGAAGAAGGCC--UUCGGGUUGUAAAGCACUU d.16.b.C.freundii.fasta GCAGCNAUGCNGCGUGUAUGAAGAAGGCC--UUCGGGUUGUAAAGUACUU d.16.b.S.dysenteriae.1.fasta GCAGCCAUGCCGCGUGUAUGAAGAAGGC---UUCGGGUUGUAAAGUACUU d.16.b.K.pneumoniae.fasta GCAGCCAUGCCGCGUGUGUGAAGAAGGCN--UUCGGGUUGUAAAGCACUU d.16.b.P.shigelloides.fasta GCAGCCAUGCCGCGUGUGUGAAGAAGGCC--UUCGGGUUGUAAAGCACUU d.16.b.Y.pestis.fasta GCAGCCAUGCCGCGUGUGUGAAGAAGGCC--UUCGGGUUGUAAAGCACUU d.16.b.Y.pseudotuberculosis.fa GCAGCCAUGCCGCGUGUGUGAAGAAGGCC--UUCGGGUUGUAAAGCACUU d.16.b.S.dysenteriae.2.fasta GCAGCCAUGCCGCGUGUAUGAAGAAGGCC--UUCGGGUUGUAAAGUACUU d.16.b.E.coli.0157G.GEN.fasta GCAGCCAUGCCGCGUGUAUGAAGAAGGCC--UUCGGGUUGUAAAGUACUU d.16.b.E.coli.EDL.GEN.fasta GCAGCCAUGCCGCGUGUAUGAAGAAGGCC--UUCGGGUUGUAAAGUACUU d.16.b.E.coli.fasta GCAGCCAUGCCGCGUGUAUGAAGAAGGCC--UUCGGGUUGUAAAGUACUU d.16.b.E.coli.K12.GEN.fasta GCAGCCAUGCCGCGUGUAUGAAGAAGGCC--UUCGGGUUGUAAAGUACUU h.16.b.E.coli.hlxnum.fasta GCAGCCAUGCCGCGUGUAUGAAGAAGGCC--UUCGGGUUGUAAAGUACUU m.16.b.E.coli.mhg.fasta GCAGCCAUGCCGCGUGUAUGAAGAAGGCC--UUCGGGUUGUAAAGUACUU s.16.b.E.coli.schem.fasta GCAGCCAUGCCGCGUGUAUGAAGAAGGCC--UUCGGGUUGUAAAGUACUU d.16.b.S.typhimurium.fasta GCAGCCAUGCCGCGUGUAUGAAGAAGGCC--UUCGGGUUGUAAAGUACUU d.16.b.S.marcescens.fasta GCAGCCAUGCNGNGUGUGUGAAGAAGGCC--UUCGGGUUGUAAAGCACUU d.16.b.E.tarda.fasta GCAGCCAUGCCGCGUGUAUGAAGAAGGCC--UUCGGGUUGUAAAGUACUU d.16.b.P.vulgaris.fasta GCAGCCAUGCCGCGUGUAUGAAGAAGGCC--UUAGGGUUGUAAAGUACUU d.16.b.V.cholerae4.fasta GCAGCCAUGCCGCGUGUAUGAAGAAGGCC--UUCGGGUUGUAAAGUACUU d.16.b.V.cholerae5.fasta GCAGCCAUGCCGCGUGUAUGAAGAAGGCC--UUCGGGUUGUAAAGUACUU d.16.b.V.cholerae2.fasta GCAGCCAUGCCGCGUGUAUGAAGAAGGCC--UUCGGGUUGUAAAGUACUU d.16.b.V.cholerae6.fasta GCAGCCAUGCCGCGUGUAUGAAGAAGGCC--UUCGGGUUGUAAAGUACUU d.16.b.V.cholerae.fasta GCAGCCAUGCCGCGUGUAUGAAGAAGGCC--UUCGGGUUGUAAAGUACUU d.16.b.V.cholerae.GEN.fasta GCAGCCAUGCCGCGUGUAUGAAGAAGGCC--UUCGGGUUGUAAAGUACUU d.16.b.V.parahaemolyticus.fast GCAGCCAUGCCGCGUGUGUGAAGAAGGCC--UUCGGGUUGUAAAGCACUU d.16.b.H.influenzae7.fasta GCAGCCAUGCCGCGUGAAUGAAGAAGGCC--UUCGGGUUGUAAAGUUCUU d.16.b.H.influenzae8.fasta GCAGCCAUGCCGCGUGAAUGAAGAAGGCC--UUCGGGUUGUAAAGUUCUU d.16.b.H.influenzae6.fasta GCAGCCAUGCCGCGUGAAUGAAGAAGGCC--UUCGGGUUGUAAAGUUCUU d.16.b.H.influenz.fasta GCAGCCAUGCCGCGUGAAUGAAGAAGGCC--UUCGGGUUGUAAAGUUCUU d.16.b.H.influenzae.fasta GCAGCCAUGCCGCGUGAAUGAAGAAGGCC--UUCGGGUUGUAAAGUUCUU d.16.b.P.multocida.fasta GCAGCCAUGCCGCGUGAAUGAAGAAGGCC--UUCGGGUUGUAAAGUUCUU d.16.b.P.multocida.GEN.fasta GCAGCCAUGCCGCGUGAAUGAAGAAGGCC--UUCGGGUUGUAAAGUUCUU d.16.b.X.albilineans.fasta CCAGCCAUGCCGCGUGGGUGAAGAAGGCC--UUCGGGUUGUAAAGCCCUU d.16.b.X.campestris.fasta CCAGCCAUGCCGCGUGGGUGAAGAAGGCC--UUCGGGUUGUAAAGCCCUU d.16.b.X.fastidiosa.GEN.fasta CCAGCUAUGCCGCGUGGGUGAAGAAUGCC--UUCGGGUUGUAAAGCCCUU d.16.b.D.nodosus.fasta CCAGCAAUGCCGCGUGUGUGAAGAAGGCC--UUCGGGUUGUAAAGCACUU d.16.b.F.tularensis.fasta CCAGCAAUGCCAUGUGUGUGAAGAAGGCC--CUAGGGUUGUAAAGCACUU d.16.b.B.parapertussis.fasta CCAGCCAUCCCGCGUGUGCGAUGAAGGCC--UUCGGGUUGUAAAGCACUU d.16.b.B.pertussis.fasta CCAGCCAUCCCGCGUGUGCGAUGAAGGCC--UUCGGGUUGUAAAGCACUU d.16.b.B.bronchiseptica2.fasta CCAGCCAUCCCGCGUGUGCGAUGAAGGCC--UUCGGGUUGUAAAGCACUU d.16.b.u.proteobacterium.fasta CCAGCAAUGCCGCGUGUGUGAUGAAGGCC--UUCGGGUUGUAAAGCACUU d.16.b.B.mallei.fasta CCAGCAAUGCCGCGUGUGUGAAGAAGGCC--UUCGGGUUGUAAAGCACUU d.16.b.Burkholderia.sp.fasta CCAGCAAUGCCGCGUGUGUGAAGAAGGCC--UUCGGGUUGUAAAGCACUU d.16.b.N.meningitidis.MD58.GEN CCAGCCAUGCCGCGUGUCUGAAGAAGGCC--UUCGGGUUGUAAAGGACUU d.16.b.N.meningitidis.Z2491.GE CCAGCCAUGCCGCGUGUCUGAAGAAGGCC--UUCGGGUUGUAAAGGACUU d.16.b.N.gonorrhoeae.fasta CCAGCCAUGCCGCGUGUCUGAAGAAGGCC--UUCGGGUUGUAAAGGACUU d.16.b.C.testosteroni.fasta CCAGCAAUGCCGCGUGCAGGAUGAAGGCC--CUCGGGUUGUAAACUGCUU d.16.b.D.desulfuricans.fasta GCAGCGACGCCGCGUGAGGGAUGAAGGUU--UUCGGAUCGUAAACCUCUG d.16.b.M.xanthus.fasta GCAGCAACGCCGCGUGUGUGAUGAAGGUC--UUUGGAUUGUAAAGCACUU d.16.b.D.thermophilus.fasta GCAGCGACGCCGCGUGGGCGAGGAAGGCC--UUCGGGUCGUAAAGCCCUU d.16.b.B.burgdorferi.fasta GGAGCGACACUGCGUGAAUGAAGAAGGUCG-A-AAGAUUGUAAAAUUCUU d.16.b.B.burgdorferi.GEN.fasta GGAGCGACACUGCGUGAAUGAAGAAGGUCG-A-AAGAUUGUAAAAUUCUU d.16.b.B.hermsii.fasta GGAGCGACACUGCGUGAACGAAGAAGGUCG-A-AAGAUUGUAAAGUUCUU d.16.b.S.aurantia.fasta GGAGCGAUGCCGCGUGAUCGAUGAAGGUCG-A-GAGAUUGUAAAGAUCUU d.16.b.T.pallidum.A.fasta GGAGCGACACCGCGUGGAUGAGGAAGGUCG-A-AAGAUUGUAAAGUUCUU d.16.b.L.illini.fasta GCAGCGACGCCGCGUGUGCGAUGAAGGCCC-U-CGGGUUGUAAAGCACA- d.16.b.L.interrogans.fasta GCAGCGACGCCGCGUGAACGAUGAAGGUCU-U-CGGAUUGUAAAGUUCA- d.16.b.C.trachomatis.GEN.fasta GAAGCGACGCCGCGUGUGUGAUGAAGGCUC-U-AGGGUUGUAAAGCACUU d.16.b.C.trachomatis.L2.fasta GAAGCGACGCCGCGUGUGUGAUGAAGGCUC-U-AGGGUUGUAAAGCACUU d.16.b.C.muridarum.fasta GAAGCGACGCCGCGUGUGUGAUGAAGGCUC-U-AGGGUUGUAAAGCACUU d.16.b.C.pneumoniae.AR39.fasta GAAGCGACGCCGCGUGUGUGAUGAAGGCCU-U-AGGGUUGUAAAGCACUU d.16.b.C.pneumoniae.fasta GAAGCGACGCCGCGUGUGUGAUGAAGGCCU-U-AGGGUUGUAAAGCACUU d.16.b.C.pneumoniae.J138.fasta GAAGCGACGCCGCGUGUGUGAUGAAGGCCU-U-AGGGUUGUAAAGCACUU d.16.b.C.pneumoniae.CWL029.fas GAAGCGACGCCGCGUGUGUGAUGAAGGCCU-U-AGGGUUGUAAAGCACUU d.16.b.C.psittaci.fasta GAAGCGACGCCGCGUGUGUGAUGAAGGCUC-U-AGGGUUGUAAAGCACUU d.16.b.D.radiodurans.1.fasta GGAGCGACGCCGCGUGAGGGAUGAAGGUUU-U-CGGAUCGUAAACC--UC d.16.b.D.radiodurans.GEN.fasta GGAGCGACGCCGCGUGAGGGAUGAAGGUUU-U-CGGAUCGUAAACC--UC d.16.b.B.fragilis.fasta CCAGCCAAGUAGCGUGAAGGAUGAAGGCUC-UAUGGGUCGUAAACUUCUU d.16.b.P.gingivalis.fasta CCAGCCAAGUCGCGUGAAGGAAGACAGUCC-UAAGGAUUGUAAACUUCUU d.16.b.C.vibrioforme.fasta GCAGCAACGCCGCGUGGAUGAUGA-AGUCC-UUCGGGAUGUAAAGUCCUU d.16.b.C.jejuni.fasta GCAGCAACGCCGCGUGGAGGAUGACACUUU-U-CGGAGCGUAAACUCCUU d.16.b.C.jejuni.GEN.fasta GCAGCAACGCCGCGUGGAGGAUGACACUUU-U-CGGAGCGUAAACUCCUU d.16.b.C.sputorum.fasta GCAGCAACGCCGCGUGGAGGAUGACACUUU-U-CGGAGCGUAAACUCCUU d.16.b.H.pylori.26695.GEN.fast GCAGCAACGCCGCGUGGAGGAUGAAGGUUU-U-AGGAUUGUAAACUCCUU d.16.b.H.pylori.J99.GEN.fasta GCAGCAACGCCGCGUGGAGGAUGAAGGUUU-U-AGGAUUGUAAACUCCUU d.16.b.H.pylori2.fasta GCAGCAACGCCGCGUGGAGGAUGAAGGUUU-U-AGGAUUGUAAACUCCUU d.16.b.A.capsulatum.fasta GCAGCAACGCCGCGUGGAGGAUGAAGUCU--CUUGGGACGUAAACUCCUU d.16.b.H.foetida.fasta GCAGCAACGCCGCGUGGGUGAUGAAGGUC--UUCGGAUUGUAAAACCCUG d.16.b.A.globiformis.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.M.luteus.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.Frankia.sp.fasta GCAGCGACGCCGCGUGGGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.bottropensis.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.scabiei.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.neyagawaensis.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.diastatochromogenes.f GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.Streptomyces.sp.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.acidiscabies.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.griseus.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.ornatus.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.subrutilus.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.bikiniensis.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.galbus.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.hygroscopicus.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.lincolnensis.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.coelicolor.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.tendae.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.ambofaciens.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.eurythermus.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.nodosus.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.sampsonii.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.glaucescens.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.pseudogriseolus.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAAC-UCUU d.16.b.S.caelestis.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.bluensis.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.espinosus.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.mashuensis.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.rimosus.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.limosus.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.odorifer.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.felleus.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.albidoflavus.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.gougerotii.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.rutgersensis.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.intermedius.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.thermodiastaticus.fas GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.thermoviolaceus.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.thermovulgaris.1.fast GCAGCGACGCCGCGUGAGGGAUGAAGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.thermovulgaris.2.fast GCAGCGACGCCGCGUGAGGGAUGAAGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.macrosporus.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.megasporus.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.S.thermolineatus.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.M.tuberculosis.2.fasta GCAGCGACGCCGCGUGGGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.M.tuberculosis.3.fasta GCAGCGACGCCGCGUGGGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.M.avium.fasta GCAGCGACGCCGCGUGGGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.M.leprae.fasta GCAGCGACGCCGCGUGGGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.M.leprae.GEN.fasta GCAGCGACGCCGCGUGGGGGAUGACGGCU--UUCGGGUUGUAAACCUCUU d.16.b.M.tuberculosis.CDC1551. GCAGCGACGCCGCGUGGGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.M.tuberculosis.GEN.fast GCAGCGACGCCGCGUGGGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.N.asteroides.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.R.erythropolis.fasta GCAGCGACGCCGCGUGAGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.C.diphtheriae.fasta GCAGCGACGCCGCGUGGGGGAUGACGGCC--UUCGGGUUGUAAACCUCUU d.16.b.A.israelii.fasta GCAGCGACGUCGCGUGAGGGAUGGAGGCC--UUCGGGUUGUGAACCUCUU d.16.b.B.hyodysenteriae.fasta GGAGCGACAUCGCGUGAGGGAUGAAGGCC--UUCGGGUUGUAAACCUCGG d.16.b.G.subterranea.fasta CCAGCGACGCCGCGUGAAGGAAGAAGUCC--UUCGGGAUGUAAACUUCUG d.16.b.P.miotherma.fasta CCAGCGACGCCGCGUGAAGGAAGAAGUCC--UUCGGGAUGUAAACUUCUG d.16.b.B.andersonii.fasta GGAGCGACGCUGCGUGAAGGAAGAAGGCA--UUCGUGUUGUAAACUNCUU d.16.b.H.aurantiacus.fasta CGAGCAACGCCGCGUGGAGGAUGACGGCU--CUUGGGUUGUAAACUCCUU d.16.b.Leptospirillium.sp.fast GCAGCAACGCCGCGUGUGGGAAGAAGGCU--UUCGGGUUGUAAACCACUU d.16.b.A.aeolicus.fasta CCCGCGACGCCGCGUGGGGGAUGAAGCCC--UGCGGGGUGUAAACCCCUG d.16.b.A.pyrophilus.fasta CCCGCGACGCCGCGUGGGGGAAGAAGCCC--UGCGGGGUGUAAACCCCUG d.16.b.T.maritima.fasta CCAGCGACGCCGCGUGCGGGACGAAGCCC--UUCGGGGUGUAAACCGCUG d.16.b.T.maritima.GEN.fasta CCAGCGACGCCGCGUGCGGGACGAAGCC---UUCGGGGUGUAAACCGCUG n.16.b.T.thermophilus.2.num.fa GGAGCGACGCCGCUUGGAGGAAGAAGCCC--UUCGGGGUGUAAACUCCUG s.16.b.T.thermophilus.2.schem. GGAGCGACGCCGCUUGGAGGAAGAAGCCC--UUCGGGGUGUAAACUCCUG d.16.b.T.thermophilus.2.fasta GGAGCGACGCCGCUUGGAGGAAGAAGCCC--UUCGGGGUGUAAACUCCUG s.16.b.T.thermophilus.1.schem. GGAGCGACGCCGCUUGGAGGAAGAAGCCC--UUCGGGGUGUAAACUCCUG n.16.b.T.thermophilus.1.num.fa GGAGCGACGCCGCUUGGAGGAAGAAGCCC--UUCGGGGUGUAAACUCCUG d.16.b.T.thermophilus.1.fasta GGAGCGACGCCGCUUGGAGGAAGAAGCCC--UUCGGGGUGUAAACUCCUG d.16.b.T.aquaticus.fasta GGAGCGACGCCGCUUGGAGGAGGAAGCCC--UUCGGGGUGUAAACUCCUG d.16.b.T.roseum.fasta GGAGCGACGCCGCGUGCGGGAGGAAGCCC--UUCGGGGUGUAAACCGCUG d.16.b.P.marina.fasta CAAGCGAUGCCGCGUGCGG-AUUAAGGCC--UUCGGGUUGUAAACCGCUG d.16.b.P.staleyi.fasta CGAGCGAUGCCGCGUGCGGGAUGAAGGCC--UUCGGGUUGUAAACCGCUG d.16.b.P.Schlesner.fasta CAAGCGACGCCGCGUGCGGGAUGAAGGCC--UUCGGGUUGUAAACCGCUU d.16.b.G.obscuriglobus.1.fasta CGAGCGAUGC-GCGUGCGCGAUGAAGGCC--UUCGGGUUGUAAAGCGCUU d.16.b.I.pallida.fasta CGAGCGACGCGCNGUGGAGGAAGACGGCC--CUUGGGUUGUAAACUCCUG d.16.a.P.abyssi.fasta GGGGGGACCCCCAGUGCCGU--GCCUCUG----------GCACGGCUUUU d.16.a.P.horikoshii.fasta GGGGGGACCCCCAGUGCCGU--GCCUCUG----------GCACGGCUUUU d.16.a.P.furiosus.fasta GGGGGGACCCCCAGUGCCGU--GCCUCUG----------GCACGGCUUUU d.16.a.T.celer.fasta GGGGGGACCCCCAGUGCCGU--GGCAACG----------CCACGGCUUUU d.16.a.A.fulgidus.fasta GGGGUCAGCCGGAGUGCUCG--CGCAUCG----------CGCGGGCUGUC d.16.a.N.equitans.fasta GGGGGGACGGAGAGUGCCGGAGGGCGUUAU------GCUCUCCGGCUUUU d.16.a.A.pernix.K1.fasta GGGGCUACCCCGAGUGCCCC--CCUUGGG----------GG--GGCUUUU d.16.a.P.occultum.fasta GGGGUCACCCCGAGUGCCGC--CGAUAAG----------GC--GGCUGUU d.16.a.T.tenax.fasta GGGGCCACCCCGAGUGCCGG--GCGAAGA----------GCCCGGCUUUU d.16.a.S.acidocaldarius.fasta GGCGCUACCCCGAGUGCCUC--CGCAAGG----------A---GGCUUUU d.16.a.S.solfataricus.fasta GGCGCUACCCCGAGUGCCUC--CGCAAGG----------A---GGCUUUU d.16.a.S.solfataricus.2.fasta GGCGCCACCCCGAGUGCUCC--CGUAAGG----------G---AGCUUUU d.16.a.M.thermautotrophicus.1. GGGGGAACCCCAAGUGC-CACUCUUAACG----------GGGUGGCUUUU d.16.a.M.thermautotrophicus.2. GGGGGAACCCCAAGUGC-CACUCUUAACG----------GGGUGGCUUUU d.16.a.M.formicicum.fasta GGGGGAAACCCAAGUGC-CACUCUUAACG----------GGGUGGCUUUU d.16.a.M.vannielii.fasta GGGGGGACCCCAAGUGCUCAUGCACAGCA----------UGG--GCUUUU d.16.a.H.marismortui.rrnA.fast AGGGGGACUCCGAGUGUGAGGGCAUAUAG----------CCCUCGCUUUU d.16.a.H.marismortui.rrnB.fast AGGGGGACUCCGAGUGUGAGGGCAUAUAG----------CCCUCGCUUUU d.16.a.Halobacterium.sp.fasta AAGGGGACUCCGAGUGUGAAGGCAUAGAG----------CCUUCACUUUU d.16.a.N.bangense.fasta AAGGGGACUCCGAGUGCGAGGGCAUAUAG----------UCCUCGCUUUU d.16.a.N.innermongoliae.fasta AAGGGGACUCCAAGUGCGAGGGCAUAUAG----------UCCUCGCUUUU d.16.a.H.volcanii.fasta AAGGGGACCCCAAGUGCGAGGGCAUAUAG----------UCCUCGCUUUU d.16.a.M.hungatei.fasta AAGGAAACCCCGAGUGCCAGCACAGG---------------CUGGCUGUC d.16.a.P.torridus.fasta ACGGGGAGCUUGAGUGUCUUGGCAAAA-G----------CCAAGACUUUU d.16.a.T.acidophilum.fasta ACGGGGAGCCUGAGUGCCUUGACUUUUUG----------UCAAGGCUUUU a.16.e.G.ardeae.fasta ----------------------------------------GGAGGAAAGG d.16.e.G.intestinalis.fasta ----------------------------------------CGAGGAAACG a.16.e.G.muris.fasta ----------------------------------------GGAGGAAAGA d.16.e.A.bracteata.fasta ----------------------------------------GG-GUCUUGA d.16.e.Glomus.sp.W3349.fasta GAAAAAACUAGAGUGUUUAAAGCAGGCAUUUUUG----CUUGAAUACAUU d.16.e.S.cerradensis.fasta GAAAAAAUUAGAGUGUUCAAAGCAGGC--UUAUG----UCUGAAUACAUU a.16.e.G.intraradices.fasta GAAAAAAUUAGAGUGUUUAAAGCAAGC--UAACG----CUUGAAUACAUU d.16.e.S.culisetae.fasta GAAAAAAUUAGAGUGUUCAAAGCAGGCA-UUUUG----CCUGAAUAUAUU a.16.e.P.balamuthi.fasta GAACAAAUUAGAGUGAUUCAGGCAGGCUUUUUUAAGCCCUUGAAUACAUU d.16.e.A.flavus.fasta GAAAAAAUUAGAGUGUUCAAAGCAGGCCUUUG------CUCGAAUACAUU d.16.e.T.caries.fasta GAAAAAAUUAGAGUGUUCAAAGCAGGCCUAUG------CCCGAAUAUAUU d.16.e.M.circinelloides.fasta GAGCAAAUCAGAGUGUUUAAAGCAGGCUUUCAAG----CUUGAAUGUGUU d.16.e.M.racemosus.fasta GAGCAAAUCAGAGUGUUUAAAGCAGGCUUUCAAG----CUUGAAUGUGUU d.16.e.R.oryzae.fasta GAGCAAAUCAGAGUGUUUAAAGCAGGCUUUUAAG----CUUGAAUGUGUU a.16.e.M.edulis.fasta ------------------------GGUGCUCUUG----ACUGAGUGUCUC a.16.e.P.magellanicus.fasta ------------------------GGUGCUCUUG----AUUGAGUGUCUC b.16.e.E.granulosus.fasta GCAGCGUUGGGGGGGCUGUGCAGUCGCGGCCAUG----AGCAAGCACUGU d.16.e.D.melanogaster.fasta ------------------UGCAUUAGUGCUCUUA----AACGAGUGUUAU b.16.e.C.koreana.fasta ------------------------AGUUCUCUUU----ACUGAGUGCUUU b.16.e.A.australis.fasta ----------------------UUGAUGCUCUUU----GCCGAGUGUCUU b.16.e.O.utahensis.fasta ------------------CGCCGCGGUGCUCUUC----ACUGAGUGUCGA b.16.e.A.salina.fasta ------------------------GGUGCUCUUA----ACCGAGUGUCCU d.16.e.M.musculus.fasta -----------------------CGAUGCUCUUA----GCUGAGUGUCCC d.16.e.R.norvegicus.fasta -----------------------CGAUGCUCUUA----GCUGAGUGUCCC d.16.e.H.sapiens.fasta -----------------------CGAUGCUCUUA----GCUGAGUGUCCC d.16.e.O.cuniculus.fasta -----------------------CGAUGCUCUUA----GCUGAGUGUCCC d.16.e.X.borealis.fasta -----------------------CGAUGCUCUUG----ACUGAGUGUCCC d.16.e.X.laevis.fasta -----------------------CGAUGCUCUUG----ACUGAGUGUCCC d.16.e.A.castellanii.fasta GGCGGUGGG---UCCCUGGGGCCCAGAUCGUUUA---CCGUGAAAAAAUU d.16.e.B.mandrillaris.fasta UGGGGCAGG---ACUG-GAGGCCCGGACCAUUUA---CUUUGAAAAAAUU d.16.e.P.falciparum.A.fasta UUUUGCU-----UUUUUGGGGAUUUUG----UUA---CUUUGAGUAAAUU d.16.e.P.falciparum.S.fasta UUUUAUUGC---UUUUGAGAGGUUUUG----UUA---CUUUGAGUAAAAU d.16.e.P.vivax.A.fasta -UU--CGG-----CUUGGAAGUCCUUG----UUA---CUUUGAGUAAAUU d.16.e.P.vivax.O.fasta -UU--CGG-----CAUUGAAUCCCUUG----UUA---CCUUGCGAAAAAU d.16.e.P.vivax.S.fasta -UUAACCA-----UAUGGAAGAUUUUG----UUA---CUUUGAGUAAAUU d.16.e.E.histolytica.fasta ------------------GAGUUGUUA----UUA---CUUUGAAUAAAAU d.16.e.I.hoferi.fasta ------------------GAGUUCGGGACUUUUA---CUGUGAGAAAAUU d.16.e.Dermocystidium.sp.fasta ----------------CUUAUUUCGGGACUUUUA---CUGUGAAAAAAUU d.16.e.S.destruens.fasta -------------------AGUUUGGGACUUUUA---CUGUGAAAAAAUU d.16.e.A.unguiculata.fasta ------------------GUGGCCGGGACCUUUA---CUUUGAAAAAAUU d.16.e.D.grandis.fasta ------------------GAAUUUGGGAUSUUUA---CUUUGAAAAAAUU d.16.e.A.macrogynus.fasta -----GGGC---UGCAGUUUUCCUAGCACUUUUA---CUUUGAAAAAAUU d.16.e.B.emersonii.fasta -----CGGG---GGAUGUCUGCCCAGCACGUUUA---CUUUGAAAAAAUU d.16.e.C.albicans.fasta AAUAGAAUA---------GGACGUUAUGGUUCUA----UUUUGUUGGUUU d.16.e.S.cerevisiae.fasta AAUAGAAUA---------GGACGUU-UGGUUCUA----UUUUGUUGGUUU d.16.e.N.crassa.fasta AAUAGAAUA---------GGACGUG-UGGUUCUA----UUUUGUUGGUUU d.16.e.P.anserina.fasta AAUGGAAUA---------GGACGUG-UGGUUCUA----UUUUGUUGGUUU d.16.e.C.immitis.fasta AAUAGAAUA---------GGACGUG-UGGUUCUA----UUUUGUUGGUUU d.16.e.L.major.fasta AACAAAGGAGCAGCCUCUAGGCUAC-CGUUUCGG---CUUUUGUUGGUUU d.16.e.T.cruzi.fasta AACAAAGGAGCAGCCUCUGGGCCAC-CGUUUCGG---CUUUUGUUGGUUU d.16.e.T.brucei.fasta AACGAAGCAUCAGCCCUGGGGCCAC-CGUUUCGG---CUUUUGUUGGUUU d.16.e.P.carinii.fasta AAUAAAAUA---------GGACAUG-UGGUUCUA----UUUUGUUGGUUU d.16.e.C.neoformans.fasta ------------------GGAACCAGGAAUUUUA---CCUUGAAAAAAUU d.16.e.Fungus.sp.QPX.fasta ------------------GGAACCAGGAAUUUUA---CCUUGAGAAAAUU d.16.e.U.maydis.fasta ------------------GGAACCAGGACUAUUA---CUUUGAAAAAAUU d.16.e.M.leidyi.fasta -----------------GGGAUUCGCGACGUUUA---CUUURAAAAAAUU d.16.e.T.cystophora.fasta -----------------AGGAUUUGCGACGUUUA---CUUUGAAAAAAUU d.16.e.M.prolifera.fasta -----------------GUAGUUCGGGACGUUUA---CUUUGAAAAAAUU d.16.e.P.haeckeli.fasta ------------------GAAGUCGAGACGUUUA---CUGUGAGAAAAUU d.16.e.E.rotunda.fasta ----------------UGCGAUCUGGAUCUAUUA---CUUUGAAAAAAUU d.16.e.P.chromatophora.fasta ----------------UGCGAUCUGGAUCUUUUA---CUUUGAAAAAAUU d.16.e.A.majus.fasta ---------------CGUGCCUCCGGCGCUGUUA---CUUUGAAGAAAUU d.16.e.S.indicum.fasta ---------------CGUGCCUCCGGCGCUGUUA---CUUUGAAGAAAUU d.16.e.D.grandiflora.fasta ---------------CGUGCCUCCGGCGUUGUUA---CUUUGAAGAAAUU d.16.e.Pla.lanceolata.fasta ---------------CGUUCCUCCAGCACUGUUA---CUUUGAAGAAAUU d.16.e.N.tabacum.fasta ---------------CGUGCCUCCGGCGCUGUUA---CUUUGAAGAAAUU d.16.e.A.thaliana.fasta ---------------CGUGCCUCCGGCGCUGUUA---CUUUGAAGAAAUU d.16.e.S.alba.fasta ---------------CGUGCCUCCGGCGCUGUUA---CUUUGAAGAAAUU d.16.e.S.tuberosum.fasta ---------------CGUGCCUCCGGCGCUGUUA---CUUGAAGAAAUUU d.16.e.F.x.ananassa.fasta ---------------CGUGCCUCCGGUGCUGUUA---CUUUGAAGAAAUU d.16.e.G.max.fasta ---------------CGUGCCUCCGGUGCUGUUA---CUUUGAAGAAAUU d.16.e.O.sativa.fasta ---------------CGUGCCUCCGGCGCCGUUA---CUUUGAAGAAAUU d.16.e.Z.mays.fasta ---------------CGUGCCUCCGG-GCCGUUA---CUUUGAAGAAAUU d.16.e.A.verticilliflorum.fast ---------------CGUGCCUUGGGUGCUGUUA---CUUUGAAGAAAUU d.16.e.G.spirotaenia.fasta ---------------UGCGAACUCGGCGAUGUUA---CUUUGAAAAAAUU d.16.e.Staurastrum.sp.M752.fas ---------------CGCGGAGUCGGCGAUGUUA---CUUUGAAAAAAUU d.16.e.C.paradoxa.fasta ---------------CAGA--CACGGAUCUUUUA---CUUUGAGUAAAUU d.16.e.G.nostochinearum.fasta ---------------CAGA--CACGGAUCCUUUA---CUUUGAGUAAAUU d.16.e.G.wittrockiana.fasta ---------------GGGGAGCACGGAUCCUUUA---CUUUGAGUAAAUU d.16.e.C.luteoviridis.fasta ---------------CCCGGAGUCGACGACGUCA---CUUUGAGUAAAUU d.16.e.O.longa.fasta UU-----------------------------UUA---CCUUGAGAAAAUU d.16.e.P.weissei.fasta UU-----------------------------UUA---CCUUGAGAAAAUU d.16.e.C.citrina.fasta UU-----------------------------UUA---CCUUGAGAAAAUU d.16.e.G.steinii.fasta UU-----------------------------UUA---CCUUGAGAAAAUU d.16.e.Ple.lanceolata.fasta UU-----------------------------UUA---CCUUGAGAAAAUU d.16.e.O.quadricornutus.fasta UU-----------------------------UUA---CCUUGAGAAAAUU d.16.e.S.lemnae.fasta UU-----------------------------UUA---CCUUGAGAAAAUU d.16.e.S.mytilus.fasta UU-----------------------------UUA---CCUUGAGAAAAUU d.16.e.E.mobilis.fasta UU-----------------------------UUA---CCUUGAGAAAAUU d.16.e.O.granulifera.1.fasta CU-----------------------------UUA---CCUUGAGAAAAUU d.16.e.O.granulifera.2.fasta UU-----------------------------UUA---CCUUGAGAAAAUU d.16.e.U.gallina.fasta UU-----------------------------UUA---CCUUGAGAAAAUU d.16.e.U.pisces.fasta CU-----------------------------UUA---CCUUGAGAAAAUU d.16.e.P.lepisma.fasta CU-----------------------------UUA---CCUUGAGAAAAUU d.16.e.U.grandis.fasta UU-----------------------------UUA---CCUUGAGAAAAUU d.16.e.B.coli.fasta -------------------------------UUA---CUGUGAGAAAAUU d.16.e.E.aediculatus.fasta UUCGUAGUC------UUCAUCGAUUAUGUUGUUU---CUUUGAGCAAAUU d.16.e.T.thermophila.fasta UU-----------------------------UUA---CUGUGAAAAAAUU d.16.e.Bangia.sp.NWT.fasta ----------------CUGCGGGCCGGCCGUUUA---CUGUGAAGAAAGU d.16.e.Bangia.sp.VIS7.fasta ----------------CCGCGGGCCGGACGUUUA---CUGUGAAGAAAUU d.16.e.E.carnea.fasta ----------------CAUAAGUUGGGAUGUUUA---CUGUGAACAAAUU d.16.e.R.parvula.fasta ----------------CACAAGUUGGGAUGUUUA---CUGUGAACAAAUU d.16.e.C.coeruleus.fasta ----------------CUGGAGUUUGCGCGUUUA---CUGUGAACAAAUU d.16.e.P.aerugineum.1.fasta ----------------CGUGAGCGCCGACUUUUA---CUGUGAAAAAAUU d.16.e.R.maculata.fasta ----------------GGCGUUCCAGGACGUUUA---CUGUGAAAAAAUU d.16.e.A.ambigua.fasta ---------------UGGGGACGGCCAUCGUUUA---CUGUGAAGAAAUU d.16.e.A.baicalensis.fasta ---------------UGGGGACAAUCAUCGUUUA---CUGUGAAGAAAUU d.16.e.S.nipponica.fasta ---------------GGGGGAUCCCCAUCGUUUA---CUGUGAAGAAAUU d.16.e.C.radiatus.fasta ---------------AGUGGAUCUCCAUCUUUUA---CUGUGAAAAAAAU d.16.e.C.criophilum.fasta ---------------UGGAUAUCCCAAUCUUUUA---CUGUGAAGAAAUU d.16.e.A.capitellata.fasta ---------------AGGGGAUGCCCAUCGUUUA---CUGUGAAAAAAUU d.16.e.S.pupula.fasta ---------------AGGGGAUGCCCAUCGUUUA---CUGUGAAAAAAUU d.16.e.T.antarctica.fasta ---------------AGGGGAUGCCCAUCGUUUA---CUGUGAAAAAAUU d.16.e.E.triangulatum.fasta ---------------UGGGGAUGCUCAUCAUUUA---CUGUGAAAAAAUC d.16.e.A.bongranii.fasta ---------------AUGGGAAGCCCAUCGUUUA---CUGUGAAAAAAUU d.16.e.Pseudogomphonema.sp.fas ---------------AGGGGAUGCCCAUCGUUUA---CUGUGAAAAAAUU d.16.e.D.tenue.fasta ---------------AGGGGAUGCCCAUCUUUUA---CUGUGAAAAAAUU d.16.e.G.marina.fasta ---------------AGGGGAUGCCCAUCGUUUA---CUGUGAAAAAAAU d.16.e.Thalassionema.sp.fasta ---------------AGGGGAUGCCCAUCGUUUA---CUGUGAAAAAAUU d.16.e.R.belgicae.fasta ---------------AGGGGAUGCCCAUCGUUUA---CUGUGAAAAAAUU d.16.e.Undatella.sp.fasta ---------------AGGGGAUGUUCAUCGUUUA---CUGUGAAAAAAUU d.16.e.C.belgica.fasta ---------------AGAGGAUCCUCAUCGUUUA---CUGUGAAAAAAUU d.16.e.O.sinensis.fasta ---------------AGGGGAUCCCCAUCGUUUA---CUGUGAAAAAAUU d.16.e.D.brightwellii.fasta ---------------AGGGGAUGCCCAUCGUUUA---CUGUGAAAAAAUU d.16.e.L.undulatum.fasta ---------------AGGGGAUGCCCAUCGUUUA---CUGUGAAAAAAUU d.16.e.T.eccentrica.fasta ---------------AGGGGAUACCCAUCGUUUA---CUGUGAAAAAAUU d.16.e.T.pseudonana.fasta ---------------AGGGGAUACCCAUCGUUUA---CUGUGAAAAAAUU d.16.e.S.costatum.fasta ---------------AGGGGAUAACCAUCGUUUA---CUGUGAAAAAAUU d.16.e.P.laevis.fasta ---------------AAGGGAUCCUUGUCAUUUA---CUGUGAAAAAAUU d.16.e.L.borealis.fasta ---------------UGGUGAAGACCAUCGUUUA---CUGUGAAAAAAUU d.16.e.P.pseudodenticulata.fas ---------------UGGUGAAAACCAUCGUUUA---CUGUGAAAAAAUU d.16.e.B.mediterranea.fasta ---------------UGGGGAUAGCCAUCGUUUA---CUGUGAAAAAAUU d.16.e.B.pacifica.fasta ---------------UGAGGAU-GCCAUCGUUUA---CUGUGAAAAAAUU d.16.e.L.minuta.fasta ---------------UGGGACCCGC-AUCGUUUA---CUGUGAAAAAAUU d.16.e.L.danicus.fasta ---------------UGGUUACGCCUAUCGUUUA---CUGUGAAGAAAUU d.16.e.Chaetoceros.sp.fasta ---------------GAUAGCCGCUCAUCGUUUA---CUGUGAGAAAAUU d.16.e.A.invadans.fasta ---------------GGUGGACUUGCAUCGUUUA---CUGUGAAAAAAUU d.16.e.L.giganteum.fasta ---------------AAUGGACUUGCAUCGUUUA---CUGUGAAAAAAUU d.16.e.M.varians.fasta ---------------UAGGAAU---CAUCUUUUA---CUGUGAAGAAAUU d.16.e.B.hominis.fasta ----------------CUGUGUGUUGGUCCUUUA---CUGUGAGAAAAUU d.16.e.P.marinus.fasta --------GACCGUGUUCCAAGAC-----UUUUA---CUUUGAGGAAAUU d.16.e.T.gondii.fasta --------GAGUUUUUUCCAGGAC-----UUUUA---CUUUGAGAAAAUU d.16.e.A.fundyense.fasta --------GUGUGUUAUUGAGAAC-----AUUUA---CUUUGAGGAAAUC d.16.e.B.bigemina.fasta ---------------------UU-------UUUA---CUUUGAGAAAAUU d.16.e.B.canis.fasta -------------UUUUUGCCUU-------AUUA---CUUUGAGAAAAUU d.16.e.Babesia.sp.OKD.fasta -------------UUUUCCCCUU-------UUUA---CUUUGAGAAAAUU d.16.e.B.microti.1.fasta ----------CUAUUUUCCGGGA-------UUUA---CUUUGAGAAAACU d.16.e.B.microti.2.fasta ----------CUGUUU-CCAGGG-------UUUA---CUUUGAGAAAACU d.16.e.B.microti.3.fasta ----------CUAUCUUCCAGUA-------UUUA---CUUUGAGAAAACU d.16.e.B.microti.4.fasta ----------CUAUUUUCCAGGA-------UUUA---CUUUGAGAAAACU d.16.e.B.microti.5.fasta ----------CUAUUUUCCAGGA-------UUUA---CUUUGAGAAAACU d.16.e.B.rodhaini.fasta ----------CAUUUUUCCACUA-------UUUA---CUUUGAGAAAACU d.16.e.B.gibsoni.fasta ----------UCUUUUUCCAGUU-------UUUA---CUUUGAGAAAAUU d.16.e.B.bovis.fasta -------------------------------UUA---CUUUGAGAAAAUU d.16.e.J.libera.fasta --------GGGCGCGCCUC-GUACGGGUACGUUC---CUGUGAGCAAAUC d.16.e.R.americana.fasta --------GAACSUGUUUCAGCACGGGCAUGUUC---CUGUGAGCAAAUC d.16.e.B.ostreae.fasta ---------------CGCUGGUCCUGAUCCUUUA---CUUUGAGAAAAUU d.16.e.A.dasyae.fasta -------------------CGGCGCCACCGUUUA---CUGUGAAAAAAUU d.16.e.A.hermannii.fasta -------------------CGGCGCCACCGUUUA---CUGUGAAAAAAUU d.16.e.N.helminthoides.fasta -------------------CGGCGCCACCGUUUA---CUGUGAAAAAAUU d.16.e.B.gelatinosum.fasta -------------------CGGCGCCACCGUUUA---CUGUGAAAAAAUU d.16.e.N.tortuosa.fasta -------------------CGGCGCCACCGUUUA---CUGUGAAAAAAUU d.16.e.T.hispida.fasta -------------------CGGCGCCACCGUUUA---CUGUGAAAAAAUU d.16.e.T.violacea.4.fasta -------------------CGGCGCCACCGUUUA---CUGUGAAAAAAUU d.16.e.T.violacea.1.fasta -------------------CGGCGCCACUUUUUA---CUGUGAAAAAAUU d.16.e.T.violacea.2.fasta -------------------CGGCGCCACUUUUUA---CUGUGAAAAAAUU d.16.e.N.shawii.fasta -------------------CGGCGCCACCGUUUA---CUGUGAAAAAAUU d.16.e.B.investiens.fasta -------------------CGGCGCCACCGUUUA---CUGUGAAAAAAUU d.16.e.B.macrosporum.fasta -------------------CGGCGCCACCAUUUA---CUGUGAAGAAAUU d.16.e.A.plicata.fasta -------------------CGGCGCCACCGUUUA---CUGUGAAUAAAUU d.16.e.C.officinalis.fasta --------------------GCAACCACCUUUUA---CUGUGAGAAAAUU d.16.e.R.carriebowensis.fasta ---GGCAGAGCGGCGGAGGCGCAGCCACCGUUUA---CUGUGAAAAAAUU d.16.e.B.hamifera.fasta -------------------CGCUGCCACCGUUUA---CUGUGAAAAAAUU d.16.e.G.vagum.fasta -------------------CGCUGCCACCGUUUA---CUGUGAAAAAAUU d.16.e.C.crispus.fasta -------------------CGCUGCCACCGUUUA---CUGUGAAAAAAUU d.16.e.H.plana.fasta -------------------CGCUGCCACCGUUUA---CUGUGAAAAAAUU d.16.e.R.leptophylla.fasta -------------------CGCUGCCACCGUUUA---CUGUGAAAAAAUU d.16.e.P.pulvinata.fasta -------------------UUCUGCCACCGUUUA---CUGUGAAAAAAUU d.16.e.C.rubrum.fasta -------------------CGCUGCCACCGUUUA---CUGUGAAAAAAUU d.16.e.Gracilariopsis.sp.fasta -------------------UGCCGCCACCGUUUA---CUGUGAAAAAAUU d.16.e.B.moritziana.fasta -------------------UUCCGCCACUGUUUA---CUGUGAAAAAAUU d.16.e.H.rubra.fasta --------------------GCGUCCCCCGUUUA---CUGUGAAAAAAUG d.16.e.D.grisea.fasta --------------------GAAGAGAAAAUUUA---CUGUGAAAAAAUU d.16.e.N.fowleri.fasta ---------------GUGAGGCCCCUUUGGGUUGCAACUGUAAAUAAAUC d.16.e.N.gruberi.fasta ---------------GUGAGGCCC--UUGGCUUGCAACUGUAAAUAAAUC a.16.e.Hexamita.sp.fasta --------------------------------UGUCACUUUGAGAAAAUC d.16.e.T.foetus.fasta --------------------------------CAAAGGCGUACGAACAUC d.16.e.A.khaliulini.fasta -------------------------------------------AAUGGCC d.16.e.E.aedis.fasta --------------------------GCUAUUUGUGAAUAUGCAACAGCC d.16.e.A.connecticus.fasta -------------------------------------------AGUGGUC d.16.e.I.barri.fasta -------------------------------------------UGUGGCC d.16.e.A.ferocious.fasta -------------------------------------------UAUAGCC d.16.e.Amblyospora.sp.fasta -------------------------------------------UAUGGCU d.16.e.C.lunata.fasta -------------------------------------------CGAGAUC d.16.e.P.anophelis.fasta --------------------------------------------GUAGCG d.16.e.Hazardia.sp.fasta -------------------------------------------CAGGGCC d.16.e.H.milleri.fasta -------------------------------------------GUUAGCC d.16.e.P.simulii.fasta ---------------------------------CGUAGGGCGCACUGUCC d.16.e.W.palustris.fasta ---------------------------------CAUAAGUGUCACUGUCC d.16.e.Nosema.sp.03.fasta -----------------------------------------AUAAUAA-- d.16.e.Nosema.sp.05.fasta -----------------------------------------AUAAUAA-- d.16.e.Endoreticulatus.sp.fast -----------------------------------------AUAAUAG-- d.16.e.Nosema.sp.02.fasta -----------------------------------------AUAAUAA-- d.16.e.N.spodopterae.fasta -----------------------------------------AUAAUAA-- d.16.e.N.trichoplusiae.fasta -----------------------------------------AUAAUAA-- d.16.e.N.bombycis.27.fasta -----------------------------------------AUAAUAA-- d.16.e.N.bombycis.02.fasta -----------------------------------------AUAAUAA-- d.16.e.V.imperfecta.fasta -----------------------------------------AUAAUAA-- d.16.e.N.furnacalis.fasta -----------------------------------------UUAAUAA-- d.16.e.Microsporidium57864.fas -----------------------------------------UUAAGAA-- d.16.e.Vairimorpha.sp.C21.fast -----------------------------------------UUAAGAA-- d.16.e.N.oulemae.fasta -----------------------------------------UUAAGAA-- d.16.e.N.necatrix.fasta -----------------------------------------UUAAGAA-- d.16.e.V.necatrix.fasta -----------------------------------------UUAAGAA-- d.16.e.N.apis.fasta -----------------------------------------UUAAGAA-- d.16.e.O.occidentalis.fasta -----------------------------------------UUAAGAA-- d.16.e.Microsporidium.sp.DP119 -------------------------------------CAAUUUAAAAACU d.16.e.V.corneae.fasta -------------------------------------GCAAAGAGAGAUG d.16.e.A.michaelis.fasta -------------------------------------UGACCUGUAAUCU d.16.e.T.contejeani.fasta ----------------------------------------UGUAAUAAUC d.16.e.E.hellem.fasta -------------------------------------UG-UGUGAUGUU- d.16.e.Encephalitozoon.sp.fast -------------------------------------GU-UUGGGGGAU- d.16.e.E.cuniculi.fasta -------------------------------------GUGUGUGAUGUU- d.16.e.O.colligata.fasta -------------------------------------GAGUAUGAAGGUG d.16.e.E.salmonis.fasta -------------------------------------GGUGCGGAUCAAG d.16.e.N.salmonis.fasta -------------------------------------GGUGCGGAUCAAG d.16.e.Enterocytozoonidae.sp.f -------------------------------------GGUGCAGAUCAAA d.16.e.E.bieneusi.fasta -------------------------------------GUCGUUGUUCAAU d.16.e.B.algerae.fasta -------------------------------------UAGACAAAAGGAC d.16.e.T.solenopsae.fasta -------------------------------------UUGAUAAUAGUUA d.16.e.V.acridophagus.fasta -------------------------------------CAGAGGAAAGGAG d.16.e.Bacillidium.sp.fasta -------------------------------------CUGUGAGUAAACU d.16.e.P.cristatellae.fasta -------------------------------------CUGUGAGAAAAAU d.16.e.Pleistophora.sp.fasta ---------------------------------------AGGCGGAGCCU d.16.e.O.operophterae.fasta -------------------------------------CUGCUCGAUGGCG d.16.e.F.magnivora.fasta -------------------------------------AUGCUAGAAGACA d.16.e.G.atherinae.fasta --------------------------------------UGUAACAGGCCU d.16.e.Ichthyosporidium.sp.fas --------------------------------------CGUGACAGUCAG d.16.e.L.acerinae.fasta --------------------------------------UGUGACGGGUCC d.16.e.H.anguillarum.fasta --------------------------------------CGUGAAAGGCCU d.16.e.P.mirandellae.fasta --------------------------------------CGUGAAAGACCU d.16.e.T.hominis.fasta --------------------------------------GGUUUAAGGCCC d.16.e.V.culicis.fasta --------------------------------------CGCUGAAGGCUC d.16.e.P.hippoglossoideos.fast --------------------------------------CGUGAAAGACCC d.16.e.Microgemma.sp.fasta --------------------------------------UUUGUAAUGUGG d.16.e.S.lophii.fasta --------------------------------------UUUGUAAUGUGG d.16.e.Pleistophora.sp.LS.fast --------------------------------------UCUGUAAUGGGC d.16.e.D.gammarellum.fasta --------------------------------------UCUGGAAUGUUU d.16.e.M.prosopium.fasta --------------------------------------UCUUUAAAGUGG d.16.e.A.scoticae.fasta ----------------------------------------UGAGGAAAGG d.16.e.P.whitei.fasta ----------------------------------------AGAGGAAACC a.16.c.C.coccineum.fasta UUCCCAGCGA---------------------------------------- a.16.c.C.ruber.fasta UUACCAGAGA---------------------------------------- d.16.c.N.tabacum.fasta UUCCCGGAGA---------------------------------------- d.16.c.S.oleracea.fasta UUCCCGGAGA---------------------------------------- d.16.c.Z.mays.fasta UUCUCGGAGA---------------------------------------- d.16.c.M.polymorpha.fasta UUCUCAGAGA---------------------------------------- d.16.c.R.communis.fasta UUCCCGGAGA---------------------------------------- d.16.c.C.vulgaris.fasta UUCUCAGAGA---------------------------------------- d.16.c.P.wickerhamii.fasta UUCUCAGAAA---------------------------------------- d.16.c.P.minor.fasta UUCUCAGAGA---------------------------------------- d.16.c.N.olivacea.fasta UUCUCAGAGA---------------------------------------- d.16.c.P.parkeae.fasta UUCUCAGAGA---------------------------------------- d.16.c.C.reinhardtii.fasta UUCUCAGAGA---------------------------------------- b.16.m.A.castellanii.fasta UUCGUCAAGG---------------------------------------- d.16.c.P.thurberi.fasta UUCUUAAAAG---------------------------------------- b.16.m.C.crispus.fasta UUUUUUAAA----------------------------------------- d.16.c.T.gondii.fasta UUGCUUAAAA---------------------------------------- b.16.m.N.crassa.fasta AACUGGUAACUUGGAGGAAUGAG-------------------GGGUCAAC b.16.m.P.anserina.fasta AACUGGUAACUUGGAAGAAU----------------------GGCUCCA- b.16.m.P.chrysogenum.fasta AACCAGUAACUUGGAAGAAU------------------------GUCUA- b.16.m.E.nidulans.fasta AACCAGUAACUUGGAAGAAUGA--------------------AAGUGUAU b.16.m.S.cerevisiae.fasta GUUCCGGGGCCCGGCCACGGAACCGGACCCGAAA--------GGAGAAAU b.16.m.W.saturnus.m.fasta UUUU---------------------------------------------U b.16.m.P.minor.fasta UUUU---------------------------------------------- d.16.c.P.falciparum.fasta AAUAU--------------------------------------------U d.16.c.B.bovis.fasta AUGU---------------------------------------------- b.16.m.T.pyriformis.fasta U-UUGACAGC-------------------------------------AGU d.16.m.S.sinuspaulianus.fasta UACUACCAGC-------------------------------------AGU b.16.m.P.tetraurelia.fasta AUGUGGGA------------------------------------------ b.16.m.D.discoideum.fasta -------------------------------------------------- d.16.m.P.polycephalum.fasta UUCUAGUAGACGGCAAGUUGUCUUAAACCCCUUU--------UUUUACGA b.16.m.P.littoralis.fasta GGUUG--------------------------------------------- b.16.m.P.wickerhamii.fasta CGGUGAUAUAU--------------------------------------U d.16.c.H.africana.fasta UUGUGAGAAA---------------------------------------- d.16.c.C.fragile.fasta UCUUAAGAA----------------------------------------- d.16.c.C.sertularioides.fasta UCUCAAAAA----------------------------------------- d.16.c.C.humicola.fasta UUCUUAGAGA---------------------------------------- d.16.c.P.uvella.fasta UUAUCGGGGA---------------------------------------- a.16.c.G.nostochinearum.fasta UUCUCAGGGA---------------------------------------- a.16.c.G.wittrockiana.fasta UUCUCAAGGA---------------------------------------- d.16.c.C.paradoxa.fasta UUCUUAGGGA---------------------------------------- d.16.y.C.paradoxa.fasta UUCUUAGGGA---------------------------------------- d.16.c.Cryptomonas.sp.fasta UUCUCAAGGA---------------------------------------- d.16.c.P.palmata.fasta UUCUUAGGGA---------------------------------------- d.16.c.H.akashiwo.fasta UUUUCAGGGA---------------------------------------- d.16.c.S.pseudocostatum.fasta UUUUCAGGGA---------------------------------------- d.16.c.P.littoralis.fasta UUGUCAAGGA---------------------------------------- d.16.c.C.caldarium.fasta UUUUCAGGAA---------------------------------------- a.16.c.E.huxleyi.fasta UUCUCAAGAA---------------------------------------- d.16.c.E.gracilis.fasta UUCUCAAAGA---------------------------------------- d.16.b.Anabaena.sp.fasta UUCUCAGGGA---------------------------------------- d.16.b.Chlorogloeopsis.PCC7518 UUCUCAGGGA---------------------------------------- d.16.b.Synechococcus.sp.fasta UUCUCAGGGA---------------------------------------- d.16.b.Synechocystis.PCC6803.G UUAUCAGGGA---------------------------------------- d.16.b.O.agardhii.fasta UUCUCAGGGA---------------------------------------- d.16.b.Pleurocapsa.7516.fasta UUAUUAAGGA---------------------------------------- d.16.b.M.aeruginosa.fasta UUCUCAAGGA---------------------------------------- b.16.m.C.reinhardtii.fasta -------------------------------------------------- d.16.m.C.eugametos.fasta -------------------------------------------------- b.16.m.M.senile.fasta -------------------------------------------------- d.16.b.S.pneumoniae.fasta UUGUAAGAGAAGAACGAGUG------------------------------ d.16.b.S.pyogenes.fasta UUGUUAGAGAAGAAUGAUGG------------------------------ d.16.b.B.anthracis.fasta UUGUUAGGGAAGAACAAGUG------------------------------ d.16.b.B.cereus.1.fasta UUGUUAGGGAAGAACAAGUG------------------------------ d.16.b.E.faecalis.fasta UUGUUAGAGAAGAACAAGGA------------------------------ d.16.b.E.faecium2.fasta UUGUUAGAGAAGAACAAGGA------------------------------ d.16.b.L.monocytogenes.fasta UUGUUAGAGAAGAACAAGGA------------------------------ d.16.b.B.subtilis.fasta UUGUUAGGGAAGAACAAGUA------------------------------ d.16.b.B.subtilis.GEN.fasta UUGUUAGGGAAGAACAAGUA------------------------------ d.16.b.B.halodurans.fasta UUGUUAGGGAAGAACAAGUG------------------------------ d.16.b.S.aureus.fasta UUAUUAGGGAAGAACAUAUG------------------------------ d.16.b.S.aureus.GEN.fasta UUAUUAGGGAAGAACAUAUG------------------------------ d.16.b.L.lactis.GEN.fasta UUGGUAGAGAAGAACGUUGG------------------------------ d.16.b.S.pyogenes.GEN.fasta UUGUUAGAGAAGAAUGAUGG------------------------------ d.16.b.L.acidophilus.fasta UUGUUGGUGAAGAAGGAUAG------------------------------ d.16.b.M.capricolum.fasta UUGUAAGGGAAGAAAAAAUA------------------------------ d.16.b.M.mycoides.fasta UUGUAAGGGAAGAAAAAAUA------------------------------ d.16.b.E.rhusiopathiae.fasta UUGUAAGGGAAGAACGAUAG------------------------------ d.16.b.C.innocuum.fasta UUGUAAGUGAAGAACGGCUC------------------------------ d.16.b.M.genitalium.fasta UUAUUUGGGAAGAAUGACUC------------------------------ d.16.b.M.pneumoniae.GEN.fasta UUAUUUGGGAAGAAUGACUU------------------------------ d.16.b.M.pneumoniae.fasta UUAUUUGGGAAGAAUGACUU------------------------------ d.16.b.M.gallisepticum.fasta UUAUUUGGGAAGAACAGUUA------------------------------ d.16.b.U.urealyticum.fasta UUAUAUGGGAAGAAACGCUA------------------------------ d.16.b.U.urealyticum.GEN.fasta UUAUAUGGGAAGAAACGCUA------------------------------ d.16.b.M.hyopneumoniae.fasta UUGUAAGGGAAGAAAAAACU------------------------------ d.16.b.F.necrophorum.fasta UCAGUCGGGAAGAA------------------------------------ d.16.b.F.nucleatum.fasta UCAGUUGGGAAGAA------------------------------------ d.16.b.S.moniliformis.fasta UCAGUAGGGAAGAA------------------------------------ d.16.b.C.botulinum.F.fasta UUUUCUAGGACGAUA----------------------------------- d.16.b.C.tetani.fasta UUUUCUGGGACGAUA----------------------------------- d.16.b.C.perfringens.fasta UCUUUGGGGAAGAUA----------------------------------- d.16.b.C.difficile.fasta UCCUCAAGGAAGAUA----------------------------------- d.16.b.E.brachy.fasta UUCUAGGUGAUGAAA----------------------------------- d.16.b.Epulopiscium.sp.fasta GCAGCAGGGAAGAAAGA--------------------------------- d.16.b.H.chlorum.fasta UCUUCGGGGAAGAAGU---------------------------------- b.16.m.G.max.fasta UCGUCGAGUGCGCGA------------------------------UCAUG b.16.m.O.berteriana.fasta UCGUCGAGUGCGCGA------------------------------UCAUG b.16.m.S.cereale.fasta UCGUCGAGUGCGCGA------------------------------UCAUG b.16.m.T.aestivum.fasta UCGUCGAGUGCGCGA------------------------------UCAUG d.16.m.Z.mays.fasta UCGUCGAGUGCGCGA------------------------------UCAUG b.16.m.M.polymorpha.fasta UCGUCGAGUAUGCGA------------------------------UUAUG b.16.m.N.olivacea.fasta UCAUUGAGAACG-AA------------------------------UUAUG d.16.b.G.liquefaciens.fasta UCGACGGGGACG--A------------------------------UGAUG d.16.b.B.japonicum.fasta UUGUGCGGGAAG--A------------------------------UAAUG d.16.b.R.acidophilus.fasta UCACCCACGACG--A------------------------------UAAUG d.16.b.A.caulinodans.fasta UCGCCGGUGAAG--A------------------------------UAAUG d.16.b.B.quintana.fasta UCACCGGUGAAG--A------------------------------UAAUG d.16.b.M.loti.fasta UCAACGGUGAAG--A------------------------------UAAUG d.16.b.A.tumefaciens.fasta UCACCGGAGAAG--A------------------------------UAAUG d.16.b.B.bacilliformis.fasta UCACCGGUGAAG--A------------------------------UAAUG d.16.b.B.henselae.fasta UCACCGGUGAAG--A------------------------------UAAUG d.16.b.B.melitensis.fasta UCACCGGUGAAG--A------------------------------UAAUG d.16.b.R.orientis.fasta UCAGUAGGGAAG--A------------------------------UAAUG d.16.b.Methylobacterium.sp.fas UUAUCCGGGACG--A------------------------------UAAUG d.16.b.R.bellii.fasta UUAGCAAGGAAG--A------------------------------UAAUG d.16.b.R.felis.URRWXCal2.fasta UUAGCAAGGAAG--A------------------------------UAAUG d.16.b.R.prowazekii.fasta UUAGCAAGGAAG--A------------------------------UAAUG d.16.b.R.prowazekii.GEN.fasta UUAGCAAGGAAG--A------------------------------UAAUG d.16.b.R.rickettsii.fasta UUAGCAAGGAAG--A------------------------------UAAUG d.16.b.A.calcoaceticus.fasta UAAGCGAGGAGGAGGCUCUCUUAG--------------------UUAAUA d.16.b.P.pacificensis.fasta UAAGCAGUGAAGAAGACUCUUCGG--------------------UUAAUA d.16.b.C.marismortui.fasta UCAGUGGGGAAGAAGGCUUGUCGG--------------------CCAAUA d.16.b.H.halodenitrificans.fas UCAGUGGGGAAGAAAUCCUCGGGG--------------------CCAAUA d.16.b.P.aeruginosa.fasta UAAGUUGGGAGGAAGGGCAGUAAG--------------------UUAAUA d.16.b.P.aeruginosa.GEN.fasta UAAGUUGGGAGGAAGGGCAGUAAG--------------------UUAAUA d.16.b.Pseudomonas.sp.fasta UAAGUUGGGAGGAAGGGCAGUAAG--------------------UUAAUA d.16.b.P.putida.fasta UAAGUUGGGAGGAAGGGCAUUAAC--------------------CUAAUA d.16.b.C.burnetii.fasta UCGGUGGGGAAGAAAUUCUCAAGG--------------------GUAAUA d.16.b.M.capsulatus.fasta UCAGCAGGAAAGAAGGGCGGGGGU--------------------UUAAUA d.16.b.L.pneumophila.1.fasta UCAGUGGGGAGGAGGGUUGAUAGG--------------------UUAAGA d.16.b.L.pneumophila.2.fasta UCAGUGGGGAGGAGGGUUGAUAGG--------------------UUAAGA d.16.b.A.vinosum.fasta UCGGUGGGAAAGAAAAGCACGGGG--------------------CUAAUA d.16.b.Beggiatoa.sp.fasta UNNGUUGGGAAGNNNAGCUGUGUG--------------------UUAAUA d.16.b.A.hydrophila.fasta UCAGCGAGGAGGAAAGGUUGGCGC--------------------CUAAUA d.16.b.S.putrefaciens.fasta UCAGUAGGGAGGAAAGGGUGUAGC--------------------UUAAUA d.16.b.C.freundii.fasta UCAGCGAGGAGGAAGGGGUUGAGG--------------------UUAAUA d.16.b.S.dysenteriae.1.fasta UCAGCGGGGAGGAAGGGAGUAAAG--------------------UUAAUA d.16.b.K.pneumoniae.fasta UCAGCGGGGAGGAAGGCGUUAAGG--------------------UUAAUA d.16.b.P.shigelloides.fasta UCAGCGGGGAGGAAGGGUCACUAG--------------------UUAAUA d.16.b.Y.pestis.fasta UCAGCGAGGAGGAAGGGGUUGAGU--------------------UUAAUA d.16.b.Y.pseudotuberculosis.fa UCAGCGAGGAGGAAGGGGUUGAGU--------------------UUAAUA d.16.b.S.dysenteriae.2.fasta UCAGCGGGGAGGAAGGGAGUAAAG--------------------UUAAUA d.16.b.E.coli.0157G.GEN.fasta UCAGCGGGGAGGAAGGGAGUAAAG--------------------UUAAUA d.16.b.E.coli.EDL.GEN.fasta UCAGCGGGGAGGAAGGGAGUAAAG--------------------UUAAUA d.16.b.E.coli.fasta UCAGCGGGGAGGAAGGGAGUAAAG--------------------UUAAUA d.16.b.E.coli.K12.GEN.fasta UCAGCGGGGAGGAAGGGAGUAAAG--------------------UUAAUA h.16.b.E.coli.hlxnum.fasta UCAGCGGGGAGGAAGGGAGUAAAG--------------------UUAAUA m.16.b.E.coli.mhg.fasta UCAGCGGGGAGGAAGGGAGUAAAG--------------------UUAAUA s.16.b.E.coli.schem.fasta UCAGCGGGGAGGAAGGGAGUAAAG--------------------UUAAUA d.16.b.S.typhimurium.fasta UCAGCGGGGAGGAAGGUGUUGUGG--------------------UUAAUA d.16.b.S.marcescens.fasta UCAGCGAGGAGGAAGGUGGUGAGC--------------------UUAAUA d.16.b.E.tarda.fasta UCAGUAGGGAGGAAGGUGUNCGUG--------------------UUAAUA d.16.b.P.vulgaris.fasta UCAGCGGGGAGGAAGGUGAUAAAG--------------------UUAAUA d.16.b.V.cholerae4.fasta UCAGUAGGGAGGAAGGUGGUUAAG--------------------UUAAUA d.16.b.V.cholerae5.fasta UCAGUAGGGAGGAAGGUGGUUAAG--------------------UUAAUA d.16.b.V.cholerae2.fasta UCAGUAGGGAGGAAGGUGGUUAAG--------------------UUAAUA d.16.b.V.cholerae6.fasta UCAGUAGGGAGGAAGGUGGUUAAG--------------------UUAAUA d.16.b.V.cholerae.fasta UCAGUAGGGAGGAAGGUGGUUAAG--------------------UUAAUA d.16.b.V.cholerae.GEN.fasta UCAGUAGGGAGGAAGGUGGUUAAG--------------------UUAAUA d.16.b.V.parahaemolyticus.fast UCAGCCGUGAGGAAGGUGGCAGUG--------------------UUAAUA d.16.b.H.influenzae7.fasta UCGGUAUUGAGGAAGGUUGAUGUG--------------------UUAAUA d.16.b.H.influenzae8.fasta UCGGUAUUGAGGAAGGUUGAUGUG--------------------UUAAUA d.16.b.H.influenzae6.fasta UCGGUAUUGAGGAAGGGAUGUGUG--------------------CUAAUA d.16.b.H.influenz.fasta UCGGUAUUGAGGAAGGUUGAUGUG--------------------UUAAUA d.16.b.H.influenzae.fasta UCGGUAUUGAGGAAGGUUGAUGUG--------------------UUAAUA d.16.b.P.multocida.fasta UCGGUAAUGAGGAAGGGAUGUUGU--------------------UAAAUA d.16.b.P.multocida.GEN.fasta UCGGUAAUGAGGAAGGGAUGUUGU--------------------UAAAUA d.16.b.X.albilineans.fasta UUGUUGGGGAAGAAAAGCAGUCGG--------------------UUAAUA d.16.b.X.campestris.fasta UUGUUGGGAAAGAAAAGCAGUCGG--------------------UUAAUA d.16.b.X.fastidiosa.GEN.fasta UUGUUGGGGAAGAAAAGCAAUUGG--------------------UUAAUA d.16.b.D.nodosus.fasta UUAUUAGUGAAGAACGGUGCAUGG--------------------UUAAUA d.16.b.F.tularensis.fasta UAGUUGGGGAGGAAAGCCUCAAGG--------------------UUAAUA d.16.b.B.parapertussis.fasta UUGGCAGGAAAGAAACGGCACGGG--------------------CUAAUA d.16.b.B.pertussis.fasta UUGGCAGGAAAGAAACGGCACGGG--------------------CUAAUA d.16.b.B.bronchiseptica2.fasta UUGGCAGGAAAGAAACGGCACGGG--------------------CUAAUA d.16.b.u.proteobacterium.fasta UUGGCGGGAACGAAAAGGACUGUG--------------------CCAAUA d.16.b.B.mallei.fasta UUGUCCGGAAAGAAAUCAUUCUGG--------------------CUAAUA d.16.b.Burkholderia.sp.fasta UUGUCCGGAAAGAAAACCUCCGUC--------------------CUAAUA d.16.b.N.meningitidis.MD58.GEN UUGUCAGGGAAGAAAAGGCUGUUG--------------------CUAAUA d.16.b.N.meningitidis.Z2491.GE UUGUCAGGGAAGAAAAGGCUGUUG--------------------CUAAUA d.16.b.N.gonorrhoeae.fasta UUGUCAGGGAAGAAAAGGCUGUUG--------------------CCAAUA d.16.b.C.testosteroni.fasta UUGUACGGAACGAAAAGCCUGGGG--------------------CUAAUA d.16.b.D.desulfuricans.fasta UCAGAAGGGAAGAAACUACGUUGU--------------------GCUAAU d.16.b.M.xanthus.fasta UCGACCGGGAAGAAAACCCGUUG---------------------GCUAAC d.16.b.D.thermophilus.fasta UCAGUGGGGAAGAAAGGUCCAGGC--------------------AGUAAC d.16.b.B.burgdorferi.fasta UUAUAAAUGAGGAAUAAGCUUUGU---------------------AGGAA d.16.b.B.burgdorferi.GEN.fasta UUAUAAAUGAGGAAUAAGCUUUGU---------------------AGGAA d.16.b.B.hermsii.fasta UUAUAAAUGAGGAAUAAGCUUUGU---------------------AGGAA d.16.b.S.aurantia.fasta UUCUACAUGAGGAAUAAGUCUGGG---------------------AGGGA d.16.b.T.pallidum.A.fasta UUGCCGACGAAGAAUGAGGACGGG---------------------AGGGA d.16.b.L.illini.fasta --ACAAACAGGGAA---------G---------------------AAGAA d.16.b.L.interrogans.fasta --GUAAGCAGGGAA---------A---------------------AAUAA d.16.b.C.trachomatis.GEN.fasta UCGCUUGGGAAUAAGAGAAGACGG---------------------UUAAU d.16.b.C.trachomatis.L2.fasta UCGCUUGGGAAUAAGAGAAGGCGG---------------------UUAAU d.16.b.C.muridarum.fasta UCGCUUGGGAAUAAGAGAAGACGG---------------------UUAAU d.16.b.C.pneumoniae.AR39.fasta UCGCCUGGGAAUAAGAGAGAUUGG---------------------CUAAU d.16.b.C.pneumoniae.fasta UCGCCUGGGAAUAAGAGAGAUUGG---------------------CUAAU d.16.b.C.pneumoniae.J138.fasta UCGCCUGGGAAUAAGAGAGAUUGG---------------------CUAAU d.16.b.C.pneumoniae.CWL029.fas UCGCCUGGGAAUAAGAGAGAUUGG---------------------CUAAU d.16.b.C.psittaci.fasta UCGCUUGGGAAUAAGAGAGAUUGG---------------------CUAAU d.16.b.D.radiodurans.1.fasta UGAAUCUGGGACGAAAGAGCCU---------------------------- d.16.b.D.radiodurans.GEN.fasta UGAAUCUGGGACGAAAGAGCCU---------------------------- d.16.b.B.fragilis.fasta UUAUAUAAGAAUAAAGUGCAGU--------------------------AU d.16.b.P.gingivalis.fasta UUAUACGGGAAUAACGGGCGAU--------------------------AC d.16.b.C.vibrioforme.fasta UUGCAGAGGAAGAACAUGCUG----------------------------- d.16.b.C.jejuni.fasta UUCUUAGGGAAGAAUUC--------------------------------- d.16.b.C.jejuni.GEN.fasta UUCUUAGGGAAGAAUUC--------------------------------- d.16.b.C.sputorum.fasta UUCUUUGGGAAGAAUAA--------------------------------- d.16.b.H.pylori.26695.GEN.fast UUGUUAGAGAAGA-UAA--------------------------------- d.16.b.H.pylori.J99.GEN.fasta UUGUUAGAGAAGA-UAA--------------------------------- d.16.b.H.pylori2.fasta UUGUUAGAGAAGA-UAA--------------------------------- d.16.b.A.capsulatum.fasta UCGAUCGGAACGA------------------------------------- d.16.b.H.foetida.fasta UCGUCAGGGACGAAGGCAUGGGAUUGAAUAU------------------- d.16.b.A.globiformis.fasta UCAGUAGGGAAGAAGCGA--A----------------------------- d.16.b.M.luteus.fasta UCAGUAGGGAAGAAGCGA--A----------------------------- d.16.b.Frankia.sp.fasta UCAGCAGGGACGAAGCGA--G----------------------------- d.16.b.S.bottropensis.fasta UCAGCAGGGAAGAAGCGA--A----------------------------- d.16.b.S.scabiei.fasta UCAGCAGGGAAGAAGCGA--A----------------------------- d.16.b.S.neyagawaensis.fasta UCAGCAGGGAAGAAGCGA--A----------------------------- d.16.b.S.diastatochromogenes.f UCAGCAGGGAAGAAGCGA--A----------------------------- d.16.b.Streptomyces.sp.fasta UCAGCAGGGAAGAAGCGA--A----------------------------- d.16.b.S.acidiscabies.fasta UCAGCAGGGAAGAAGCGA--A----------------------------- d.16.b.S.griseus.fasta UCAGCAGGGAAGAAGCGA--G----------------------------- d.16.b.S.ornatus.fasta UCAGCAGGGAAGAAGCGA--G----------------------------- d.16.b.S.subrutilus.fasta UCAGCAGGGAAGAAGCGA--A----------------------------- d.16.b.S.bikiniensis.fasta UCAGCAGGGAAGAAGCGC--A----------------------------- d.16.b.S.galbus.fasta UCAGCAGGGAAGAAGCGA--A----------------------------- d.16.b.S.hygroscopicus.fasta UCAGCAGGGAAGAAGCGA--A----------------------------- d.16.b.S.lincolnensis.fasta UCAGCAGGGAAGAAGCGA--A----------------------------- d.16.b.S.coelicolor.fasta UCAGCAGGGAAGAAGCGA--A----------------------------- d.16.b.S.tendae.fasta UCAGCAGGGAAGAAGCGA--A----------------------------- d.16.b.S.ambofaciens.fasta UCAGCAGGGAAGAAGCGA--A----------------------------- d.16.b.S.eurythermus.fasta UCAGCAGGGAAGAAGCGA--A----------------------------- d.16.b.S.nodosus.fasta UCAGCAGGGAAGAAGCGA--G----------------------------- d.16.b.S.sampsonii.fasta UCAGCAGGGAAGAAGCGA--A----------------------------- d.16.b.S.glaucescens.fasta UCAGCAGGGAAGAAGCGA--A----------------------------- d.16.b.S.pseudogriseolus.fasta UCAGCAGGGAAGAAGCGA--A----------------------------- d.16.b.S.caelestis.fasta UCAGCAGGGAAGAAGCGA--A----------------------------- d.16.b.S.bluensis.fasta UCAGCAGGGAAGAAGCGU--G----------------------------- d.16.b.S.espinosus.fasta UCAGCAGGGAAGAAGCGC--C----------------------------- d.16.b.S.mashuensis.fasta UCAGCAGGGAAGAAGCGA--A----------------------------- d.16.b.S.rimosus.fasta UCAGCAGGGAAGAAGCGC--A----------------------------- d.16.b.S.limosus.fasta UCAGCAGGGAAGAAGCGA--A----------------------------- d.16.b.S.odorifer.fasta UCAGCAGGGAAGAAGCGA--A----------------------------- d.16.b.S.felleus.fasta UCAGCAGGGAAGAAGCGA--A----------------------------- d.16.b.S.albidoflavus.fasta UCAGCAGGGAAGAAGCGA--A----------------------------- d.16.b.S.gougerotii.fasta UCAGCAGGGAAGAAGCGA--A----------------------------- d.16.b.S.rutgersensis.fasta UCAGCAGGGAAGAAGCGA--A----------------------------- d.16.b.S.intermedius.fasta UCAGCAGGGAAGAAGCGA--A----------------------------- d.16.b.S.thermodiastaticus.fas UCAGCAGGGAAGAAGCGC--A----------------------------- d.16.b.S.thermoviolaceus.fasta UCAGCAGGGAAGAAGCGC--A----------------------------- d.16.b.S.thermovulgaris.1.fast UCAGCAGGGAAGAAGCUCUUG----------------------------- d.16.b.S.thermovulgaris.2.fast UCAGCAGGGAAGAAGCUCUUG----------------------------- d.16.b.S.macrosporus.fasta UCAGCAGGGAAGAAGCGG--A----------------------------- d.16.b.S.megasporus.fasta UCAGCAGGGAAGAAGCGC--A----------------------------- d.16.b.S.thermolineatus.fasta UCAGCAGGGAAGAAGCGC--A----------------------------- d.16.b.M.tuberculosis.2.fasta UCACCAUCGACGAAGGUCCGGGUUCUC----------------------- d.16.b.M.tuberculosis.3.fasta UCACCAUCGACGAAGGUCCGGGUUCUC----------------------- d.16.b.M.avium.fasta UCACCAUCGACGAAGGUCCGGGUUUUC----------------------- d.16.b.M.leprae.fasta UCACCAUCGACGAAGGUCUGGGUUUUC----------------------- d.16.b.M.leprae.GEN.fasta UCACCAUCGACGAAGGUCUGGGUUUUC----------------------- d.16.b.M.tuberculosis.CDC1551. UCACCAUCGACGAAGGUCCGGGUUCUC----------------------- d.16.b.M.tuberculosis.GEN.fast UCACCAUCGACGAAGGUCCGGGUUCUC----------------------- d.16.b.N.asteroides.fasta UCGACAGGGACGAAGCGCAAG----------------------------- d.16.b.R.erythropolis.fasta UCAGCAGGGACGAAGCGCAAG----------------------------- d.16.b.C.diphtheriae.fasta UCGCUAGGGACGAAGCUUUUG----------------------------- d.16.b.A.israelii.fasta UCGCCGGUGAAGAAGGUCCUGCUCUUUGUGG------------------- d.16.b.B.hyodysenteriae.fasta AAAUUAUCGAAGAAUGAG-------------------------------- d.16.b.G.subterranea.fasta AACUUAC---AGAAUAACAGCAUA---------------------AGGGG d.16.b.P.miotherma.fasta AACUAAU---CGAAUAAGNGGGUA---------------------GUGGA d.16.b.B.andersonii.fasta UUCUAAAGGAAGAAUAAGUGUGGG---------------------AGGAA d.16.b.H.aurantiacus.fasta UUGGGGGGGACGAUAA---------------------------------- d.16.b.Leptospirillium.sp.fast UUGCCCGGGACGAAAAGGGAUGUC---------------------AGAAC d.16.b.A.aeolicus.fasta UCGGGGGGGACGAUGCGGACACGGGUUAAUA------------------- d.16.b.A.pyrophilus.fasta UCGGGGGGGACGAAGGGACUGUGGGUUAAUA------------------- d.16.b.T.maritima.fasta UGGCGGGGGAAGAAUAAGGUAGGGAGGAAAU------------------- d.16.b.T.maritima.GEN.fasta UGGCGGGGGAAGAAUAAGGUAGGGAGGAAAU------------------- n.16.b.T.thermophilus.2.num.fa AACCCGGGACGAAACCCCCGACGAGGGGAC-------------------- s.16.b.T.thermophilus.2.schem. AACCCGGGACGAAACCCCCGACGAGGGGAC-------------------- d.16.b.T.thermophilus.2.fasta AACCCGGGACGAAACCCCCGACGAGGGGAC-------------------- s.16.b.T.thermophilus.1.schem. AACCCGGGACGAAACCCCCGACGAGGGGAC-------------------- n.16.b.T.thermophilus.1.num.fa AACCCGGGACGAAACCCCCGACGAGGGGAC-------------------- d.16.b.T.thermophilus.1.fasta AACCCGGGACGAAACCCCCGACGAGGGGAC-------------------- d.16.b.T.aquaticus.fasta AACCCGGGACGAAACCCCCGAUGAGGGGAC-------------------- d.16.b.T.roseum.fasta --UUCGGGGGGA------CGAUCGAGCGAC-------------------- d.16.b.P.marina.fasta UCAGAGGGGAAGAAAU---------------------------------- d.16.b.P.staleyi.fasta UCGUAGGGGAUGAAGUGCUAGGGGG-----------------------UU d.16.b.P.Schlesner.fasta UUCUAGGGGAUGAAGUGCCAGGGGG-----------------------UU d.16.b.G.obscuriglobus.1.fasta UAGUGGGGGAGAAAAGCCGAGAGG-------------------------- d.16.b.I.pallida.fasta NCNNGGGGAAGGAAGGGUCGGCGAA-----------------------GA d.16.a.P.abyssi.fasta CCGGAGUGUAAAAAGC---------------------------------- d.16.a.P.horikoshii.fasta CCGGAGUGUAAAAAGC---------------------------------- d.16.a.P.furiosus.fasta CCGGAGUGUAAAAAGC---------------------------------- d.16.a.T.celer.fasta CCGGAGUGUAAAAAGC---------------------------------- d.16.a.A.fulgidus.fasta GGGGUGCCUAAAAAGCA--------------------------------- d.16.a.N.equitans.fasta GGGGAGUGUAAGUAGC---------------------------------- d.16.a.A.pernix.K1.fasta CCCCGCUGUAAGUAGG---------------------------------- d.16.a.P.occultum.fasta CCCCGCUGUAGGAAGG---------------------------------- d.16.a.T.tenax.fasta GCCCGGUGUAAGGAGC---------------------------------- d.16.a.S.acidocaldarius.fasta CCCCGCUCUAAAAAGG---------------------------------- d.16.a.S.solfataricus.fasta CCCCGCUCUAAAAAGG---------------------------------- d.16.a.S.solfataricus.2.fasta CCCCGCUCUACAAAGG---------------------------------- d.16.a.M.thermautotrophicus.1. CAGAAGUGUAAAAAGC---------------------------------- d.16.a.M.thermautotrophicus.2. CAGAAGUGUAAAAAGC---------------------------------- d.16.a.M.formicicum.fasta CUUAAGUGUAAAAAGC---------------------------------- d.16.a.M.vannielii.fasta AUCAAGUGUAAACAGC---------------------------------- d.16.a.H.marismortui.rrnA.fast CUGUACCGUAAGGUGG---------------------------------- d.16.a.H.marismortui.rrnB.fast CUGUACCGUAAGGUGG---------------------------------- d.16.a.Halobacterium.sp.fasta GUACACCGUAAGGUGG---------------------------------- d.16.a.N.bangense.fasta CACCACCGUAAGGAGG---------------------------------- d.16.a.N.innermongoliae.fasta UGCGACCGUAAGGUGG---------------------------------- d.16.a.H.volcanii.fasta CUCGACCGUAAGGCGG---------------------------------- d.16.a.M.hungatei.fasta CACCAGUGUAAAUAAC---------------------------------- d.16.a.P.torridus.fasta CUUAUGCCUAAAAAGC---------------------------------- d.16.a.T.acidophilum.fasta CUGAUGCCUAAAAAGC---------------------------------- a.16.e.G.ardeae.fasta GGAGCGCU------------------------------------------ d.16.e.G.intestinalis.fasta GGAGCGCU------------------------------------------ a.16.e.G.muris.fasta GGAGCGCU------------------------------------------ d.16.e.A.bracteata.fasta GGUGCGCU------------------------------------------ d.16.e.Glomus.sp.W3349.fasta AGCAUGGAAUAA-------------------------------------- d.16.e.S.cerradensis.fasta AGCAUGGAAUAA-------------------------------------- a.16.e.G.intraradices.fasta AGCAUGGAAUAA-------------------------------------- d.16.e.S.culisetae.fasta AGCAUGGAAUAA-------------------------------------- a.16.e.P.balamuthi.fasta AGCAUGGGACAAACACAUCCCAAAAACAACCUGGGUCGGGUGGCACCGGG d.16.e.A.flavus.fasta AGCAUGGAAUAA-------------------------------------- d.16.e.T.caries.fasta AGCAUGGAAUAA-------------------------------------- d.16.e.M.circinelloides.fasta AGCAUGGAAUAA-------------------------------------- d.16.e.M.racemosus.fasta AGCAUGGAAUAA-------------------------------------- d.16.e.R.oryzae.fasta AGCAUGGAAUAA-------------------------------------- a.16.e.M.edulis.fasta -------------------------------------------------- a.16.e.P.magellanicus.fasta -------------------------------------------------- b.16.e.E.granulosus.fasta CGCGUCAAGCCGACGAGGUGGUGGUGUCGCCUUUAAGCCAUGUCUGUGGU d.16.e.D.melanogaster.fasta -------------------------------------------------- b.16.e.C.koreana.fasta -------------------------------------------------- b.16.e.A.australis.fasta -------------------------------------------------- b.16.e.O.utahensis.fasta -------------------------------------------------- b.16.e.A.salina.fasta -------------------------------------------------- d.16.e.M.musculus.fasta -------------------------------------------------- d.16.e.R.norvegicus.fasta -------------------------------------------------- d.16.e.H.sapiens.fasta -------------------------------------------------- d.16.e.O.cuniculus.fasta -------------------------------------------------- d.16.e.X.borealis.fasta -------------------------------------------------- d.16.e.X.laevis.fasta -------------------------------------------------- d.16.e.A.castellanii.fasta AGAGUGUU------------------------------------------ d.16.e.B.mandrillaris.fasta AGAGUGUU------------------------------------------ d.16.e.P.falciparum.A.fasta AGAGUGUU------------------------------------------ d.16.e.P.falciparum.S.fasta UAAGUGUU------------------------------------------ d.16.e.P.vivax.A.fasta AGAGUGUU------------------------------------------ d.16.e.P.vivax.O.fasta AAACUGUU------------------------------------------ d.16.e.P.vivax.S.fasta AAAGUGUU------------------------------------------ d.16.e.E.histolytica.fasta AAGGUGUU------------------------------------------ d.16.e.I.hoferi.fasta AGAGUGUU------------------------------------------ d.16.e.Dermocystidium.sp.fasta AGAGUGUU------------------------------------------ d.16.e.S.destruens.fasta AGAGUGUU------------------------------------------ d.16.e.A.unguiculata.fasta AGAGUGUU------------------------------------------ d.16.e.D.grandis.fasta AGAGUGUU------------------------------------------ d.16.e.A.macrogynus.fasta AGAGUGUU------------------------------------------ d.16.e.B.emersonii.fasta AGAGUGUU------------------------------------------ d.16.e.C.albicans.fasta C------------------------------------------------- d.16.e.S.cerevisiae.fasta C------------------------------------------------- d.16.e.N.crassa.fasta C------------------------------------------------- d.16.e.P.anserina.fasta C------------------------------------------------- d.16.e.C.immitis.fasta C------------------------------------------------- d.16.e.L.major.fasta UAAAGGUCUAUUGGAGAUUA------------------------------ d.16.e.T.cruzi.fasta UAAAAGUCCAUUGGAGAUUA------------------------------ d.16.e.T.brucei.fasta UAGAAGUCCUUGGGAGAUUA------------------------------ d.16.e.P.carinii.fasta C------------------------------------------------- d.16.e.C.neoformans.fasta AGAGUGUU------------------------------------------ d.16.e.Fungus.sp.QPX.fasta AGAGUGUU------------------------------------------ d.16.e.U.maydis.fasta AGAGUGUU------------------------------------------ d.16.e.M.leidyi.fasta AGAGUGUU------------------------------------------ d.16.e.T.cystophora.fasta AGAGUGUU------------------------------------------ d.16.e.M.prolifera.fasta AGAGUGUU------------------------------------------ d.16.e.P.haeckeli.fasta AGAGUGUU------------------------------------------ d.16.e.E.rotunda.fasta AGAGUGUU------------------------------------------ d.16.e.P.chromatophora.fasta AGAGUGUU------------------------------------------ d.16.e.A.majus.fasta AGAGUGCU------------------------------------------ d.16.e.S.indicum.fasta AGAGUGCU------------------------------------------ d.16.e.D.grandiflora.fasta AGAGUGCU------------------------------------------ d.16.e.Pla.lanceolata.fasta AGAGUGCU------------------------------------------ d.16.e.N.tabacum.fasta AGAGUGCU------------------------------------------ d.16.e.A.thaliana.fasta AGAGUGCU------------------------------------------ d.16.e.S.alba.fasta AGAGUGCU------------------------------------------ d.16.e.S.tuberosum.fasta AGAGUGCU------------------------------------------ d.16.e.F.x.ananassa.fasta AGAGUGCU------------------------------------------ d.16.e.G.max.fasta AGAGUGCU------------------------------------------ d.16.e.O.sativa.fasta AGAGUGCU------------------------------------------ d.16.e.Z.mays.fasta AGAGUGCU------------------------------------------ d.16.e.A.verticilliflorum.fast AGUGUGCU------------------------------------------ d.16.e.G.spirotaenia.fasta AGAGUGUU------------------------------------------ d.16.e.Staurastrum.sp.M752.fas AGAGUGUU------------------------------------------ d.16.e.C.paradoxa.fasta GGAGUGUU------------------------------------------ d.16.e.G.nostochinearum.fasta GGAGUGUU------------------------------------------ d.16.e.G.wittrockiana.fasta GGAGUGUU------------------------------------------ d.16.e.C.luteoviridis.fasta AGAGUGUU------------------------------------------ d.16.e.O.longa.fasta AGAGUGUU------------------------------------------ d.16.e.P.weissei.fasta AGAGUGUU------------------------------------------ d.16.e.C.citrina.fasta AGAGUGUU------------------------------------------ d.16.e.G.steinii.fasta AGAGUGUU------------------------------------------ d.16.e.Ple.lanceolata.fasta AGAGUGUU------------------------------------------ d.16.e.O.quadricornutus.fasta AGAGUGUU------------------------------------------ d.16.e.S.lemnae.fasta AGAGUGUU------------------------------------------ d.16.e.S.mytilus.fasta AGAGUGUU------------------------------------------ d.16.e.E.mobilis.fasta AGAGUGUU------------------------------------------ d.16.e.O.granulifera.1.fasta AGAGUGUU------------------------------------------ d.16.e.O.granulifera.2.fasta AGAGUGUU------------------------------------------ d.16.e.U.gallina.fasta AGAGUGUU------------------------------------------ d.16.e.U.pisces.fasta AGAGUGUU------------------------------------------ d.16.e.P.lepisma.fasta AGAGUGUU------------------------------------------ d.16.e.U.grandis.fasta AGAGUGUU------------------------------------------ d.16.e.B.coli.fasta AGAGUGUU------------------------------------------ d.16.e.E.aediculatus.fasta AUAGUGUU------------------------------------------ d.16.e.T.thermophila.fasta AGAGUGUU------------------------------------------ d.16.e.Bangia.sp.NWT.fasta AAAGUGUU------------------------------------------ d.16.e.Bangia.sp.VIS7.fasta AGAGUGUU------------------------------------------ d.16.e.E.carnea.fasta AGAGUGUU------------------------------------------ d.16.e.R.parvula.fasta AGAGUGUU------------------------------------------ d.16.e.C.coeruleus.fasta AGAGUGUU------------------------------------------ d.16.e.P.aerugineum.1.fasta AGAGUGUU------------------------------------------ d.16.e.R.maculata.fasta AGAGUGUU------------------------------------------ d.16.e.A.ambigua.fasta AGAGUGUU------------------------------------------ d.16.e.A.baicalensis.fasta AGAGUGUU------------------------------------------ d.16.e.S.nipponica.fasta AGAGUGUU------------------------------------------ d.16.e.C.radiatus.fasta AGAGUGUU------------------------------------------ d.16.e.C.criophilum.fasta AGAGUGUU------------------------------------------ d.16.e.A.capitellata.fasta AGAGUGUU------------------------------------------ d.16.e.S.pupula.fasta AGAGUGUU------------------------------------------ d.16.e.T.antarctica.fasta AGAGUGUU------------------------------------------ d.16.e.E.triangulatum.fasta AGCGCGUU------------------------------------------ d.16.e.A.bongranii.fasta AGAGUGUU------------------------------------------ d.16.e.Pseudogomphonema.sp.fas AGAGUGUU------------------------------------------ d.16.e.D.tenue.fasta AGAGUGUU------------------------------------------ d.16.e.G.marina.fasta AGAGUGUU------------------------------------------ d.16.e.Thalassionema.sp.fasta AGAGUGUU------------------------------------------ d.16.e.R.belgicae.fasta AGAGUGUU------------------------------------------ d.16.e.Undatella.sp.fasta AGAGUGUU------------------------------------------ d.16.e.C.belgica.fasta AGAGUGUU------------------------------------------ d.16.e.O.sinensis.fasta AGAGUGUU------------------------------------------ d.16.e.D.brightwellii.fasta AGAGUGUU------------------------------------------ d.16.e.L.undulatum.fasta AGAGUGUU------------------------------------------ d.16.e.T.eccentrica.fasta AGAGUGUU------------------------------------------ d.16.e.T.pseudonana.fasta AGAGUGUU------------------------------------------ d.16.e.S.costatum.fasta AGAGUGUU------------------------------------------ d.16.e.P.laevis.fasta AGAGUGUU------------------------------------------ d.16.e.L.borealis.fasta AGAGUGUU------------------------------------------ d.16.e.P.pseudodenticulata.fas AGAGUGUU------------------------------------------ d.16.e.B.mediterranea.fasta AGAGUGUU------------------------------------------ d.16.e.B.pacifica.fasta AGAGUGUU------------------------------------------ d.16.e.L.minuta.fasta AGAGUGUU------------------------------------------ d.16.e.L.danicus.fasta AGGGUGUU------------------------------------------ d.16.e.Chaetoceros.sp.fasta AGAGUGUU------------------------------------------ d.16.e.A.invadans.fasta AGAGUGUU------------------------------------------ d.16.e.L.giganteum.fasta AGAGUGUU------------------------------------------ d.16.e.M.varians.fasta AGAGUGUU------------------------------------------ d.16.e.B.hominis.fasta AGAGUGUU------------------------------------------ d.16.e.P.marinus.fasta AGAGUGUU------------------------------------------ d.16.e.T.gondii.fasta AGAGUGUU------------------------------------------ d.16.e.A.fundyense.fasta AGAGUGUU------------------------------------------ d.16.e.B.bigemina.fasta AGAGUGUU------------------------------------------ d.16.e.B.canis.fasta AGAGUGUU------------------------------------------ d.16.e.Babesia.sp.OKD.fasta AGAGUGUU------------------------------------------ d.16.e.B.microti.1.fasta AGAGUGUU------------------------------------------ d.16.e.B.microti.2.fasta AGAGUGUU------------------------------------------ d.16.e.B.microti.3.fasta AGAGUGUU------------------------------------------ d.16.e.B.microti.4.fasta AGAGUGUU------------------------------------------ d.16.e.B.microti.5.fasta AGAGUGUU------------------------------------------ d.16.e.B.rodhaini.fasta AGAGUGUU------------------------------------------ d.16.e.B.gibsoni.fasta AGAGUGUU------------------------------------------ d.16.e.B.bovis.fasta AGAGUGUU------------------------------------------ d.16.e.J.libera.fasta AGAGUGUU------------------------------------------ d.16.e.R.americana.fasta AGAGUGUU------------------------------------------ d.16.e.B.ostreae.fasta AAAGUGCU------------------------------------------ d.16.e.A.dasyae.fasta AGAGUGUU------------------------------------------ d.16.e.A.hermannii.fasta AGAGUGUU------------------------------------------ d.16.e.N.helminthoides.fasta AGAGUGUU------------------------------------------ d.16.e.B.gelatinosum.fasta AGAGUGUU------------------------------------------ d.16.e.N.tortuosa.fasta AGAGUGUU------------------------------------------ d.16.e.T.hispida.fasta AGAGUGUU------------------------------------------ d.16.e.T.violacea.4.fasta AGAGUGUU------------------------------------------ d.16.e.T.violacea.1.fasta AGAGUGUU------------------------------------------ d.16.e.T.violacea.2.fasta AGAGUGUU------------------------------------------ d.16.e.N.shawii.fasta AGAGUGUU------------------------------------------ d.16.e.B.investiens.fasta AGAGUGUU------------------------------------------ d.16.e.B.macrosporum.fasta AGAGUGUU------------------------------------------ d.16.e.A.plicata.fasta AGAGUGUU------------------------------------------ d.16.e.C.officinalis.fasta AGAGUGUU------------------------------------------ d.16.e.R.carriebowensis.fasta AGAGUGUU------------------------------------------ d.16.e.B.hamifera.fasta AGAGUGUU------------------------------------------ d.16.e.G.vagum.fasta GGAGUGUU------------------------------------------ d.16.e.C.crispus.fasta AGAGUGUU------------------------------------------ d.16.e.H.plana.fasta AGAGUGUU------------------------------------------ d.16.e.R.leptophylla.fasta AGAGUGUU------------------------------------------ d.16.e.P.pulvinata.fasta AGAGUGUU------------------------------------------ d.16.e.C.rubrum.fasta AGAGUGUU------------------------------------------ d.16.e.Gracilariopsis.sp.fasta AGAGUGUU------------------------------------------ d.16.e.B.moritziana.fasta AGAGUGUU------------------------------------------ d.16.e.H.rubra.fasta AGAGUGUU------------------------------------------ d.16.e.D.grisea.fasta AGAGUGUU------------------------------------------ d.16.e.N.fowleri.fasta GUUGUGCU------------------------------------------ d.16.e.N.gruberi.fasta GUUGUGCU------------------------------------------ a.16.e.Hexamita.sp.fasta GGAGUGUU------------------------------------------ d.16.e.T.foetus.fasta UGUUCGUU------------------------------------------ d.16.e.A.khaliulini.fasta UGAAGGUA------------------------------------------ d.16.e.E.aedis.fasta UGGGUUAA------------------------------------------ d.16.e.A.connecticus.fasta UGGAGUAA------------------------------------------ d.16.e.I.barri.fasta UGAGUCAA------------------------------------------ d.16.e.A.ferocious.fasta UGAGUUAA------------------------------------------ d.16.e.Amblyospora.sp.fasta UGAGUGUA------------------------------------------ d.16.e.C.lunata.fasta UAAAGUAA------------------------------------------ d.16.e.P.anophelis.fasta GGUCGUUG------------------------------------------ d.16.e.Hazardia.sp.fasta AGCAUCAA------------------------------------------ d.16.e.H.milleri.fasta AGCAUCAA------------------------------------------ d.16.e.P.simulii.fasta UGUGGGUA------------------------------------------ d.16.e.W.palustris.fasta UGUGGGUA------------------------------------------ d.16.e.Nosema.sp.03.fasta -------------------------------------------------- d.16.e.Nosema.sp.05.fasta -------------------------------------------------- d.16.e.Endoreticulatus.sp.fast -------------------------------------------------- d.16.e.Nosema.sp.02.fasta -------------------------------------------------- d.16.e.N.spodopterae.fasta -------------------------------------------------- d.16.e.N.trichoplusiae.fasta -------------------------------------------------- d.16.e.N.bombycis.27.fasta -------------------------------------------------- d.16.e.N.bombycis.02.fasta -------------------------------------------------- d.16.e.V.imperfecta.fasta -------------------------------------------------- d.16.e.N.furnacalis.fasta -------------------------------------------------- d.16.e.Microsporidium57864.fas -------------------------------------------------- d.16.e.Vairimorpha.sp.C21.fast -------------------------------------------------- d.16.e.N.oulemae.fasta -------------------------------------------------- d.16.e.N.necatrix.fasta -------------------------------------------------- d.16.e.V.necatrix.fasta -------------------------------------------------- d.16.e.N.apis.fasta -------------------------------------------------- d.16.e.O.occidentalis.fasta -------------------------------------------------- d.16.e.Microsporidium.sp.DP119 AUGAU--------------------------------------------- d.16.e.V.corneae.fasta CGAGG--------------------------------------------- d.16.e.A.michaelis.fasta AUUUG--------------------------------------------- d.16.e.T.contejeani.fasta UUGUG--------------------------------------------- d.16.e.E.hellem.fasta -------------------------------------------------- d.16.e.Encephalitozoon.sp.fast -------------------------------------------------- d.16.e.E.cuniculi.fasta -------------------------------------------------- d.16.e.O.colligata.fasta A-GUG--------------------------------------------- d.16.e.E.salmonis.fasta CGCAC--------------------------------------------- d.16.e.N.salmonis.fasta CGCAC--------------------------------------------- d.16.e.Enterocytozoonidae.sp.f GGCAC--------------------------------------------- d.16.e.E.bieneusi.fasta AGCGA--------------------------------------------- d.16.e.B.algerae.fasta GACUC--------------------------------------------- d.16.e.T.solenopsae.fasta UUCUC--------------------------------------------- d.16.e.V.acridophagus.fasta GACUCUUA------------------------------------------ d.16.e.Bacillidium.sp.fasta AUAAUACU------------------------------------------ d.16.e.P.cristatellae.fasta AUGGUUCU------------------------------------------ d.16.e.Pleistophora.sp.fasta CUUUG--------------------------------------------- d.16.e.O.operophterae.fasta CAGGC--------------------------------------------- d.16.e.F.magnivora.fasta CUUUCUUC------------------------------------------ d.16.e.G.atherinae.fasta UCUC---------------------------------------------- d.16.e.Ichthyosporidium.sp.fas ACUC---------------------------------------------- d.16.e.L.acerinae.fasta CAGC---------------------------------------------- d.16.e.H.anguillarum.fasta UCUU---------------------------------------------- d.16.e.P.mirandellae.fasta UCCU---------------------------------------------- d.16.e.T.hominis.fasta GCUA---------------------------------------------- d.16.e.V.culicis.fasta CCUA---------------------------------------------- d.16.e.P.hippoglossoideos.fast UUUUAUU------------------------------------------- d.16.e.Microgemma.sp.fasta UCUA---------------------------------------------- d.16.e.S.lophii.fasta CUUA---------------------------------------------- d.16.e.Pleistophora.sp.LS.fast CUGC---------------------------------------------- d.16.e.D.gammarellum.fasta CUGA---------------------------------------------- d.16.e.M.prosopium.fasta UGGA---------------------------------------------- d.16.e.A.scoticae.fasta GCUGUGCU------------------------------------------ d.16.e.P.whitei.fasta GCGGGGCC------------------------------------------ a.16.c.C.coccineum.fasta ---AUAAA--AAUGACGG-UAUCUGGAGAAUA------------------ a.16.c.C.ruber.fasta ---AUAAAGCAAUGACGG-UAUCUGGUGAAUA------------------ d.16.c.N.tabacum.fasta ---AGAAG-CAAUGACGG-UAUCUGGGGAAUA------------------ d.16.c.S.oleracea.fasta ---AGAAG-CAAUGACGG-UAUCCGGGGAAUA------------------ d.16.c.Z.mays.fasta ---AGAAA-CAAUGACGG-UAUCUGAGGAAUA------------------ d.16.c.M.polymorpha.fasta ---AGAUG-CAAUGACGG-UAUCUGAGGAAUA------------------ d.16.c.R.communis.fasta ---AGAAG-CAAUGACGG-UAUCUGGGGAAUA------------------ d.16.c.C.vulgaris.fasta ---AGAAG-CAUUGACGG-UAUCUGAGGAAUA------------------ d.16.c.P.wickerhamii.fasta ---AGAU--UAAUGACGG-UAUCUGAGGAAUA------------------ d.16.c.P.minor.fasta ---CGAAU-AAAUGACGG-UAUCUGAGGAAUA------------------ d.16.c.N.olivacea.fasta ---CGAAG-UUCUGACGG-UAUCUGAGGAAGA------------------ d.16.c.P.parkeae.fasta ---AGAAG-UUCUGACGG-UAUCUGAGGAAUA------------------ d.16.c.C.reinhardtii.fasta ---AGAAG-UUCUGACGG-UAUCUGAGGAAUA------------------ b.16.m.A.castellanii.fasta --AUUAUAAUGCAAUCGU-ACUUGAAGGAGAA------------------ d.16.c.P.thurberi.fasta --AUUA-AUUAAGAAGGU-AUUUUAAG-AAAA------------------ b.16.m.C.crispus.fasta -------AUAAAUAAUGA-UUUUAAUAAAAUA------------------ d.16.c.T.gondii.fasta --AA-AUAAUACUGACGU-UUAAGUUUAAAAA------------------ b.16.m.N.crassa.fasta UUUGCAAAUGGAUGAGUG-AUCGUUAGAAGAUCCUUAGUCCCCUGGUCUU b.16.m.P.anserina.fasta --UAAAAAUGGA----------GUUAA----------------------- b.16.m.P.chrysogenum.fasta --UGUAACUUGU-------AUGGUUACAU--------------------- b.16.m.E.nidulans.fasta UAUAAUAAUACA-----------AUAA----------------------- b.16.m.S.cerevisiae.fasta AUUAAAUAUUUAU-AAUA-AUAAUAAUAAUAAUAUAUAUAUAUAAAUUGA b.16.m.W.saturnus.m.fasta UUUUAAAAUUUA--AAUA--UAGUAAAGAAAA------------AAUUG- b.16.m.P.minor.fasta ---AAAUUUUUUU-AUUA-AUUUUAUAAUGAA---------------UGA d.16.c.P.falciparum.fasta GUAAACUUUUUAU-UUUA-UUUUUAAAUAUUG------------------ d.16.c.B.bovis.fasta ---AAAUUUCUGUAAAUA-AUUCUAAAACAUG---------------UGA b.16.m.T.pyriformis.fasta GAGGAAUUUUGGACAAUA-UGCGAAAGCAUGAUCCAGCGAACUAA--UGG d.16.m.S.sinuspaulianus.fasta CAAGAAUAUUAGUCAAUG-CUCGUAAGAGUGAACUAGCUAACU------G b.16.m.P.tetraurelia.fasta --UAUGCCUCUUUGACUU-UUUUUAAACGCAG------------------ b.16.m.D.discoideum.fasta --UAAACCUCUUU---UA-AUAAGGAAGAUAA------------------ d.16.m.P.polycephalum.fasta UUAUAAUGACUGUAGUUA-GUAUAUAUCUAUUUAUCAAGAUGAGGGUUGG b.16.m.P.littoralis.fasta --UAAACCUCUUUUUUAA-CUGAGGAUAAUGAC----------------- b.16.m.P.wickerhamii.fasta UUUAGAUUAUUUAUAAUU-UUAAAGAGCAGAGAUUA-----------UGA d.16.c.H.africana.fasta -AUAAGGAAAAUGACAGU-AUCUCAAGAAUAA------------------ d.16.c.C.fragile.fasta ---AGAAUUC--UGACGG-UACUUAAGGAAUA------------------ d.16.c.C.sertularioides.fasta ---AGAAAAAAAUGACGG-UAUUUGAGGAAAA------------------ d.16.c.C.humicola.fasta --AGAAGAUCUGACGGUA-UCUAAGGAAUAAG------------------ d.16.c.P.uvella.fasta --AGAAAAACUGACGUUA-CCUGAGGAAUAAG------------------ a.16.c.G.nostochinearum.fasta ---AGAAG-AUAUGACGG-UACCUGAGGAAUA------------------ a.16.c.G.wittrockiana.fasta ---AGAAAUAAAUGACGG-UACUUGAGGAAUA------------------ d.16.c.C.paradoxa.fasta ---AGAAU-AAAUGACGG-UACCUAAGGAAUA------------------ d.16.y.C.paradoxa.fasta ---AGAAU-CAAUGACGG-UACCUAAGGAAUA------------------ d.16.c.Cryptomonas.sp.fasta ---AGAAG-UUCUGACGG-UACUUGAGGAAUA------------------ d.16.c.P.palmata.fasta ---AGAAG-CUCUGACGG-UACCUAAAGAAUA------------------ d.16.c.H.akashiwo.fasta ---GGAAG-UUCUGACGU-UACCUGAAGAAUA------------------ d.16.c.S.pseudocostatum.fasta ---GGAAU-CAAUGACGUGUACCUGAAGAAUA------------------ d.16.c.P.littoralis.fasta ---AGAAGAUUCUGACGU-UACUUGACGAAUA------------------ d.16.c.C.caldarium.fasta ---AGAAA-CUUUGACGG-UACCUGAAGAAUA------------------ a.16.c.E.huxleyi.fasta ---AGAAG-UUCUGACGG-UACUUGAGGAAUA------------------ d.16.c.E.gracilis.fasta ---AGAAG-AAAUGACGG-UAUUUGAGGAAUA------------------ d.16.b.Anabaena.sp.fasta ---AUAAAAAAAUGAAGGUACCUGAGGAAUAA------------------ d.16.b.Chlorogloeopsis.PCC7518 ---AGAAGAAAUUGACGGUACCUGAGGAAAAA------------------ d.16.b.Synechococcus.sp.fasta ---AGAAGAAAGUGACGGUACCUGAGGAAUAA------------------ d.16.b.Synechocystis.PCC6803.G ---AGAAGUUC-UGACGGUACCUGAUGAAUAA------------------ d.16.b.O.agardhii.fasta ---AGAACACAAUGACGGUACCUGAGGAAAAA------------------ d.16.b.Pleurocapsa.7516.fasta ---AGAAUCAAGUGACGGUACUUAAAGAAUCA------------------ d.16.b.M.aeruginosa.fasta ---AGAAGUUC-UGACGGUACUUGAGGAAUCA------------------ b.16.m.C.reinhardtii.fasta -----------AAAAUUGUUUGUGAAC----------------------- d.16.m.C.eugametos.fasta -----------AAUAUUAGUCCUGG------------------------- b.16.m.M.senile.fasta -----------UUAAUUGAGCCCGU------------------------- d.16.b.S.pneumoniae.fasta --UGAGAGUGGAAAGUUCACACUGUNACGGUAUCUUACCAGA-------- d.16.b.S.pyogenes.fasta --UGGGAGUGGAAAAUCCACCAAGUGACGGUAACUAACCAGA-------- d.16.b.B.anthracis.fasta --CUAGUUGAAUNAGCUGGCACCUNGACGGUACCUAACCAGA-------- d.16.b.B.cereus.1.fasta --CUAGUUGAAUAAGCUGGCACCUNGACGGUACCUNACCAGA-------- d.16.b.E.faecalis.fasta --CGUUAGUAACUGAACGUCCCCUGAC-GGUAUCUAACCAGA-------- d.16.b.E.faecium2.fasta --UGAGAGUAACUGUUCAUCCCUUGAC-GGUAUCUAACCAGA-------- d.16.b.L.monocytogenes.fasta --UAAGAGUAACUGCUUGUCCCUUGAC-GGUAUCUAACCAGA-------- d.16.b.B.subtilis.fasta --CCGUUCGAAUAGGGCGGUACCUUGACGGUACCUAACCAGA-------- d.16.b.B.subtilis.GEN.fasta --CCGUUCGAAUAGGGCGGUACCUUGACGGUACCUAACCAGA-------- d.16.b.B.halodurans.fasta --CCGUUCGAA-AGGGCGGCACCUUGACGGUACCUAACGAGA-------- d.16.b.S.aureus.fasta --UGUAAGUAACUGUGCA-CAUCUUGACGGUACCUAAUCAGA-------- d.16.b.S.aureus.GEN.fasta --UGUAAGUAACUGUGCA-CAUCUUGACGGUACCUAAUCAGA-------- d.16.b.L.lactis.GEN.fasta --UGAGAGUGGAAAGCUCAUCAAGUGACGGUAACUACCCAGA-------- d.16.b.S.pyogenes.GEN.fasta --UGGGAGUGGAAAAUCCACCAAGUGACGGUAACUAACCAGA-------- d.16.b.L.acidophilus.fasta --AGGUAGUAACUGGCCUUUAUUUGAC-GGUAAUCAACCAGA-------- d.16.b.M.capricolum.fasta --GAGUAGGAAAUGACUUUAUCUUGAC-AGUACCUUACCAGA-------- d.16.b.M.mycoides.fasta --AAGUAGGAAAUGACUUUAUCUUGAC-AGUACCUUACCAGA-------- d.16.b.E.rhusiopathiae.fasta --GAAGAGGGAAUGCUUCUUAUAUGAC-GGUACCUUACCAGA-------- d.16.b.C.innocuum.fasta --AUAGAGGAAAUGCUAUGGGAGUGAC-GGUAGCUUACCAGA-------- d.16.b.M.genitalium.fasta --UAGCAGGCAAUGGCUGG-AGUUUGACUGUACCACUUUGAAU------- d.16.b.M.pneumoniae.GEN.fasta --UAGCAGGUAAUGGCUAG-AGUUUGACUGUACCAUUUUGAAU------- d.16.b.M.pneumoniae.fasta --UAGCAGGUAAUGGCUAG-AGUUUGACUGUACCAUUUUGAAU------- d.16.b.M.gallisepticum.fasta --GUAGAGUGGAAAGCUAUUAAUUUGACUGUACCA-UUUGAAU------- d.16.b.U.urealyticum.fasta --AGAUAGGAAAUGAUUUU-AGUUUGACUGUACCA-UUUGAAU------- d.16.b.U.urealyticum.GEN.fasta --AAAUAGGAAAUGAUUUU-AGUUUGACUGUACCA-UUUGAAU------- d.16.b.M.hyopneumoniae.fasta --AGAUAGGAAAUGCUCUA-GUCUUGACGGUACCUUAUUAGA-------- d.16.b.F.necrophorum.fasta -------GUCAGUGACGGUACCGACAG-------------AAG------- d.16.b.F.nucleatum.fasta -------AAAAAUGACGGUACCAACAG-------------AAG------- d.16.b.S.moniliformis.fasta -------GAAGAUGACGGUACCUACAG-------------AAG------- d.16.b.C.botulinum.F.fasta -----------AUGACGGUACUAGAGG-------------AGG------- d.16.b.C.tetani.fasta -----------AUGACGGUACCAGAGG-------------AGG------- d.16.b.C.perfringens.fasta -----------AUGACGGUACCCAAGG-------------AGG------- d.16.b.C.difficile.fasta ----------A-UGACGGUACUUGAGG-------------AGG------- d.16.b.E.brachy.fasta ----------ACUGACAGUAACCUAGG-------------AGA------- d.16.b.Epulopiscium.sp.fasta ----------AAUGACGGUACCUGAAU-------------AAG------- d.16.b.H.chlorum.fasta ----------UUUGACGGUACCCGAGG-------------AGG------- b.16.m.G.max.fasta --------------ACAGGACUCGAGGAAGAA------------------ b.16.m.O.berteriana.fasta --------------ACAGGACUCGAGGAAGAA------------------ b.16.m.S.cereale.fasta --------------ACAGGACUCGAGGAAGAA------------------ b.16.m.T.aestivum.fasta --------------ACAGGACUCGAGGAAGAA------------------ d.16.m.Z.mays.fasta --------------ACAGGACUCGAGGAAGAA------------------ b.16.m.M.polymorpha.fasta --------------ACAAGACUCGAAGAAGAA------------------ b.16.m.N.olivacea.fasta --------------AUGUAACUCAAAGAAGAA------------------ d.16.b.G.liquefaciens.fasta --------------ACGGUACCCGUAGAAGAA------------------ d.16.b.B.japonicum.fasta --------------ACGGUACCGCAAGAAUAA------------------ d.16.b.R.acidophilus.fasta --------------ACGGUAGUGGGCGAAGAA------------------ d.16.b.A.caulinodans.fasta --------------ACGGUAACCGGAGAAGAA------------------ d.16.b.B.quintana.fasta --------------ACGUUAACCGGAGAAGAA------------------ d.16.b.M.loti.fasta --------------ACGGUAACCGUAGAAGAA------------------ d.16.b.A.tumefaciens.fasta --------------ACGGUAUCCGGAGAAGAA------------------ d.16.b.B.bacilliformis.fasta --------------ACGGUAGCCGGAGAAGAA------------------ d.16.b.B.henselae.fasta --------------ACGGUAACCGGAGAAGAA------------------ d.16.b.B.melitensis.fasta --------------ACGGUAACCGGAGAAGAA------------------ d.16.b.R.orientis.fasta --------------ACGGUACCUACAGAAGAA------------------ d.16.b.Methylobacterium.sp.fas --------------ACGGUACCGGAGGAAUAA------------------ d.16.b.R.bellii.fasta --------------ACGUUACUUGCAGAAAAA------------------ d.16.b.R.felis.URRWXCal2.fasta --------------ACGUUACUUGCAGAAAAA------------------ d.16.b.R.prowazekii.fasta --------------ACGUUACUUGCAGAAAAA------------------ d.16.b.R.prowazekii.GEN.fasta --------------ACGUUACUUGCAGAAAAA------------------ d.16.b.R.rickettsii.fasta --------------ACGUUACUUGCAGAAAAA------------------ d.16.b.A.calcoaceticus.fasta CCUAAGAUGAGUGGACGUUACUCGCAGAAUAA------------------ d.16.b.P.pacificensis.fasta CCCGGGGACGAUG-ACAUUAGCUGCAGAAUAA------------------ d.16.b.C.marismortui.fasta CCCGGCAAGAGCG-ACAUCACCCACAGAAGAA------------------ d.16.b.H.halodenitrificans.fas CCUCCGAGGGAGG-ANAUCACCCACAGAAGAA------------------ d.16.b.P.aeruginosa.fasta CCUUGCUGUUUUG-ACGUUACCAACAGAAUAA------------------ d.16.b.P.aeruginosa.GEN.fasta CCUUGCUGUUUUG-ACGUUACCAACAGAAUAA------------------ d.16.b.Pseudomonas.sp.fasta CCUUGCUGUUUUG-ACGUUACCAACAGGAUAA------------------ d.16.b.P.putida.fasta CGUUAGUGUUUUC-ACGUUACCGACAGAAUAA------------------ d.16.b.C.burnetii.fasta UCCUNGGGCGUUG-ACGUUACCCACAGAAGAA------------------ d.16.b.M.capsulatus.fasta CCAUGCCCACUUG-ACGUUACCUGCAGAAGAA------------------ d.16.b.L.pneumophila.1.fasta GCUGAUUAACUGG-ACGUUACCCACAGAAGAA------------------ d.16.b.L.pneumophila.2.fasta GCUGAUUAACUGG-ACGUUACCCACAGAAGAA------------------ d.16.b.A.vinosum.fasta CCUCCGUGUAUUG-ACGUUACCCACAGAAGAA------------------ d.16.b.Beggiatoa.sp.fasta CCACAUAGUGUUG-ACGUUACCAACNNAAUAA------------------ d.16.b.A.hydrophila.fasta CGUGUCAACUGUG-ACGUUACUCGCAGAAGAA------------------ d.16.b.S.putrefaciens.fasta CGCUAUAUCUGUG-ACGUUACCUACAGAAGAA------------------ d.16.b.C.freundii.fasta ACCUCAGCCAUUG-ACGUUACUCGCAGAAGAA------------------ d.16.b.S.dysenteriae.1.fasta CCUUUGCUCAUUG-ACGUUACCCGCAGAAGAA------------------ d.16.b.K.pneumoniae.fasta ACCUUGGCGAUUG-ACGUUACCCGCAGAAGAA------------------ d.16.b.P.shigelloides.fasta CCUAGUGGCAUUG-ACGUUACUCGCAGAAGAA------------------ d.16.b.Y.pestis.fasta CGCUCAAUCAUUG-ACGUUACUCGCAGAAGAA------------------ d.16.b.Y.pseudotuberculosis.fa CGCUCAAUCAUUG-ACGUUACUCGCAGAAGAA------------------ d.16.b.S.dysenteriae.2.fasta CCUUUGCUCAUUG-ACGUUACCCGCAGAAGAA------------------ d.16.b.E.coli.0157G.GEN.fasta CCUUUGCUCAUUG-ACGUUACCCGCAGAAGAA------------------ d.16.b.E.coli.EDL.GEN.fasta CCUUUGCUCAUUG-ACGUUACCCGCAGAAGAA------------------ d.16.b.E.coli.fasta CCUUUGCUCAUUG-ACGUUACCCGCAGAAGAA------------------ d.16.b.E.coli.K12.GEN.fasta CCUUUGCUCAUUG-ACGUUACCCGCAGAAGAA------------------ h.16.b.E.coli.hlxnum.fasta CCUUUGCUCAUUG-ACGUUACCCGCAGAAGAA------------------ m.16.b.E.coli.mhg.fasta CCUUUGCUCAUUG-ACGUUACCCGCAGAAGAA------------------ s.16.b.E.coli.schem.fasta CCUUUGCUCAUUG-ACGUUACCCGCAGAAGAA------------------ d.16.b.S.typhimurium.fasta ACCGCAGCAAUUG-ACGUUACCCGCAGAAGAA------------------ d.16.b.S.marcescens.fasta CGCUCAUCAAUUG-ACGUUACUCGCAGAAGAA------------------ d.16.b.E.tarda.fasta GCACGUACAAUUG-ACGUUACCUACAGAAGAA------------------ d.16.b.P.vulgaris.fasta CCUUUAUCAAUUG-ACGUUACCCGCAGAAGAA------------------ d.16.b.V.cholerae4.fasta CCUUAAUCAUUUG-ACGUUACCUACAGAAGAA------------------ d.16.b.V.cholerae5.fasta CCUUAAUCAUUUG-ACGUUACCUACAGAAGAA------------------ d.16.b.V.cholerae2.fasta CCUUAAUCAUUUG-ACGUUACCUACAGAAGAA------------------ d.16.b.V.cholerae6.fasta CCUUAAUCAUUUG-ACGUUACCUACAGAAGAA------------------ d.16.b.V.cholerae.fasta CCUUAAUCAUUUG-ACGUUACCUACAGAAGAA------------------ d.16.b.V.cholerae.GEN.fasta CCUUAAUCAUUUG-ACGUUACCUACAGAAGAA------------------ d.16.b.V.parahaemolyticus.fast GCACCAUCAUUUG-ACGUUAGCGCCAGAAGAA------------------ d.16.b.H.influenzae7.fasta GUACAUCAAAUUG-ACGUUAAAUACAGAAGAA------------------ d.16.b.H.influenzae8.fasta GCACAUCAAAUUG-ACGUUAAAUACAGAAGAA------------------ d.16.b.H.influenzae6.fasta GUACACGUCAUUG-ACGUUAAAUACAGAAGAA------------------ d.16.b.H.influenz.fasta GCACAUCAAAUUG-ACGUUAAAUACAGAAGAA------------------ d.16.b.H.influenzae.fasta GUACAUCAAAUUG-ACGUUAAAUACAGAAGAA------------------ d.16.b.P.multocida.fasta GAUAGCAUCAUUG-ACGUUAAUUACAGAAGAA------------------ d.16.b.P.multocida.GEN.fasta GAUAGCAUCAUUG-ACGUUAAUUACAGAAGAA------------------ d.16.b.X.albilineans.fasta CCCGAUUGUUCUG-ACGGUACCCAAAGAAUAA------------------ d.16.b.X.campestris.fasta CCCGAUUGUUCUG-ACGGUACCCAAAGAAUAA------------------ d.16.b.X.fastidiosa.GEN.fasta CCUAGUUGUUAUG-ACGGUACCCAAAGAAUAA------------------ d.16.b.D.nodosus.fasta CCCAUGCAAU-UG-ACAUUAGCUAAGGAAAAA------------------ d.16.b.F.tularensis.fasta GCCUUGGGGGAGG-ACGUUACCCAAAGAAUAA------------------ d.16.b.B.parapertussis.fasta UCCUGUGCAACUG-ACGGUACCUGCAGAAUAA------------------ d.16.b.B.pertussis.fasta UCCUGUGCAACUG-ACGGUACCUGCAGAAUAA------------------ d.16.b.B.bronchiseptica2.fasta UCCUGUGCAACUG-ACGGUACCUGCAGAAUAA------------------ d.16.b.u.proteobacterium.fasta CCACGGUUCGAUG-ACGGUACCCGCAGAAUAA------------------ d.16.b.B.mallei.fasta CCCGGAGUGGAUG-ACGGUACCGGAAGAAUAA------------------ d.16.b.Burkholderia.sp.fasta CGGUGGGGGGAUG-ACGGUACCGGAAGAAUAA------------------ d.16.b.N.meningitidis.MD58.GEN UCAGCGGCUGAUG-ACGGUACCUGAAGAAUAA------------------ d.16.b.N.meningitidis.Z2491.GE UCAGCGGCUGAUG-ACGGUACCUGAAGAAUAA------------------ d.16.b.N.gonorrhoeae.fasta UCGGCGGCCGAUG-ACGGUACCUGAAGAAUAA------------------ d.16.b.C.testosteroni.fasta UCCCCGGGUCAUG-ACGGUACCGUAAGAAUAA------------------ d.16.b.D.desulfuricans.fasta CAGCAGCGUACUG-ACGGUACCUUCAAAGGAA------------------ d.16.b.M.xanthus.fasta AUCCAACGGCUUG-ACGGUACCGGGAGAAGAA------------------ d.16.b.D.thermophilus.fasta UGGUUUGGAUUUG-ACGGUACCCACAGAAGAA------------------ d.16.b.B.burgdorferi.fasta AUGACAAAGUGAUGACGUUAAU-UUAUGAAUA------------------ d.16.b.B.burgdorferi.GEN.fasta AUGACAAAGUGAUGACGUUAAU-UUAUGAAUA------------------ d.16.b.B.hermsii.fasta AUGACAAAGUGAUGACGUUAAU-UUAUGAAUA------------------ d.16.b.S.aurantia.fasta AUGCCUGGAUGAUGACGUUAGU-GUAGGAAUA------------------ d.16.b.T.pallidum.A.fasta AUGCCCGUUUGAUGACGGUAGUCGUGCGAAUA------------------ d.16.b.L.illini.fasta A----------GUGACGGUACCUGUCUG---A------------------ d.16.b.L.interrogans.fasta GCAGCAAUGUGAUGAUGGUACCUGCCUA---A------------------ d.16.b.C.trachomatis.GEN.fasta ACCCGCUGGAUUUGAGCGUACC-AGGUAAAGA------------------ d.16.b.C.trachomatis.L2.fasta ACCCGCUGGAUUUGAGCGUACC-AGGUAAAGA------------------ d.16.b.C.muridarum.fasta ACCCGUUGGAUUUGAGCGUACC-AGGUAAAGA------------------ d.16.b.C.pneumoniae.AR39.fasta AUCCAAUCGAUUUGAGCGUACC-AGGUAAAGA------------------ d.16.b.C.pneumoniae.fasta AUCCAAUCGAUUUGAGCGUACC-AGGUAAAGA------------------ d.16.b.C.pneumoniae.J138.fasta AUCCAAUCGAUUUGAGCGUACC-AGGUAAAGA------------------ d.16.b.C.pneumoniae.CWL029.fas AUCCAAUCGAUUUGAGCGUACC-GGGUAAAGA------------------ d.16.b.C.psittaci.fasta AUCCAAUCGAUUUGAGCGUACC-AGGUAAAGA------------------ d.16.b.D.radiodurans.1.fasta -UCGGGCAGAU--GACGGUACC-AGA-GUAAU------------------ d.16.b.D.radiodurans.GEN.fasta -UAGGGCAGAU--GACGGUACC-AGA-GUAAU------------------ d.16.b.B.fragilis.fasta GUAUACUG-UUUUGUAUGUAUU-AUAUGAAUA------------------ d.16.b.P.gingivalis.fasta GAGUAUUG-CAUUGAAUGUACC-GUAAGAAUA------------------ d.16.b.C.vibrioforme.fasta GUUUACCGGCAGUGACGGUACU-CUGCGAAUA------------------ d.16.b.C.jejuni.fasta ------------UGACGGUACC-UAAGGAAUA------------------ d.16.b.C.jejuni.GEN.fasta ------------UGACGGUACC-UAAGGAAUA------------------ d.16.b.C.sputorum.fasta ------------UGACGGUACC-AAAGGAAUA------------------ d.16.b.H.pylori.26695.GEN.fast ------------UGACGGUAUC-UAACGAAUA------------------ d.16.b.H.pylori.J99.GEN.fasta ------------UGACGGUAUC-UAACGAAUA------------------ d.16.b.H.pylori2.fasta ------------UGACGGUAUC-UAACGAAUA------------------ d.16.b.A.capsulatum.fasta -----UUAUG----ACGGUACCGGAAGAA-GA------------------ d.16.b.H.foetida.fasta --UUCCUAUGCUUGACGGUACCUGGAGAG-GA------------------ d.16.b.A.globiformis.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.M.luteus.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.Frankia.sp.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.bottropensis.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.scabiei.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.neyagawaensis.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.diastatochromogenes.f ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.Streptomyces.sp.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.acidiscabies.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.griseus.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.ornatus.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.subrutilus.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.bikiniensis.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.galbus.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.hygroscopicus.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.lincolnensis.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.coelicolor.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.tendae.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.ambofaciens.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.eurythermus.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.nodosus.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.sampsonii.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.glaucescens.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.pseudogriseolus.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.caelestis.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.bluensis.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.espinosus.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.mashuensis.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.rimosus.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.limosus.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.odorifer.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.felleus.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.albidoflavus.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.gougerotii.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.rutgersensis.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.intermedius.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.thermodiastaticus.fas ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.thermoviolaceus.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.thermovulgaris.1.fast ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.thermovulgaris.2.fast ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.macrosporus.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.megasporus.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.S.thermolineatus.fasta ------AGUG----ACGGUACCUGCAGAA-GA------------------ d.16.b.M.tuberculosis.2.fasta --UCGGAUUG----ACGGUAGGUGGAGAA-GA------------------ d.16.b.M.tuberculosis.3.fasta --UCGGAUUG----ACGGUAGGUGGAGAA-GA------------------ d.16.b.M.avium.fasta --UCGGAUUG----ACGGUAGGUGGAGAA-GA------------------ d.16.b.M.leprae.fasta --UCGGAUUG----ACGGUAGGUGGAGAA-GA------------------ d.16.b.M.leprae.GEN.fasta --UCGGAUUG----ACGGUAGGUGGAGAA-GA------------------ d.16.b.M.tuberculosis.CDC1551. --UCGGAUUG----ACGGUAGGUGGAGAA-GA------------------ d.16.b.M.tuberculosis.GEN.fast --UCGGAUUG----ACGGUAGGUGGAGAA-GA------------------ d.16.b.N.asteroides.fasta --------UG----ACGGUACCUGUAGAA-GA------------------ d.16.b.R.erythropolis.fasta --------UG----ACGGUACCUGCAGAA-GA------------------ d.16.b.C.diphtheriae.fasta --------UG----ACGGUACCUAGAUAA-GA------------------ d.16.b.A.israelii.fasta --UGGGGUUG----ACGGUAGCCGGGUUAUGA------------------ d.16.b.B.hyodysenteriae.fasta --------UG----ACAGUAGAUAAUGUA--------------------- d.16.b.G.subterranea.fasta -AC-UUAUG-UAUGAAGGUAAGUAAGGAA-AA------------------ d.16.b.P.miotherma.fasta CACACUACA-GAAGAAGGUAGAUUAGGAA-AA------------------ d.16.b.B.andersonii.fasta AUGCCUGCAUGAUGACGGUACUUUAGGAAUAA------------------ d.16.b.H.aurantiacus.fasta ------------UGACGGUACCCUCCGAAUCA------------------ d.16.b.Leptospirillium.sp.fast ACGGCAUUUCGAUGACGGUACCGGGAGAAUAA------------------ d.16.b.A.aeolicus.fasta -GCCCGUGUCCGUGACGGUACCCCCAGAGGAA------------------ d.16.b.A.pyrophilus.fasta -GCCCACAGUCUUGACGGUACCCCCAGAGGAA------------------ d.16.b.T.maritima.fasta -GCCC-UACCGAUGACGGUACCCCGCUAGAAA------------------ d.16.b.T.maritima.GEN.fasta -GCCC-UACCGAUGACGGUACCCCGCUAGAAA------------------ n.16.b.T.thermophilus.2.num.fa ------------UGACGGUACCGGGGUA-AUA------------------ s.16.b.T.thermophilus.2.schem. ------------UGACGGUACCGGGGUA-AUA------------------ d.16.b.T.thermophilus.2.fasta ------------UGACGGUACCGGGGUA-AUA------------------ s.16.b.T.thermophilus.1.schem. ------------UGACGGUACCGGGGUA-AUA------------------ n.16.b.T.thermophilus.1.num.fa ------------UGACGGUACCGGGGUA-AUA------------------ d.16.b.T.thermophilus.1.fasta ------------UGACGGUACCGGGGUA-AUA------------------ d.16.b.T.aquaticus.fasta ------------UGACGGUACCGGGGUA-AUA------------------ d.16.b.T.roseum.fasta -------------GGUACCCUCGGAGCA-A-------------------- d.16.b.P.marina.fasta ----------UUUGA-CUGAUCCUCAGAGGAA------------------ d.16.b.P.staleyi.fasta CUCCCUCUAGUUUGAGCUGAACCUAGGAGGAA------------------ d.16.b.P.Schlesner.fasta CUCCCCUUGGUUUGA-CAGAUCUUAGGAAUAA------------------ d.16.b.G.obscuriglobus.1.fasta ----------UGUGAUCU-AUCCCAAAAAUAA------------------ d.16.b.I.pallida.fasta GCCNAU----CUUGA-CCGCUCCCUGGAGGAA------------------ d.16.a.P.abyssi.fasta ---------------------UCCGGGAAUAA------------------ d.16.a.P.horikoshii.fasta ---------------------UCCGGGAAUAA------------------ d.16.a.P.furiosus.fasta ---------------------UCCGGGAAUAA------------------ d.16.a.T.celer.fasta ---------------------UCCGGGAAUAA------------------ d.16.a.A.fulgidus.fasta ---------------------CCCCACAGCAA------------------ d.16.a.N.equitans.fasta ---------------------UCCCCGAAUAA------------------ d.16.a.A.pernix.K1.fasta ---------------------CGGGGGAAUAA------------------ d.16.a.P.occultum.fasta ---------------------CGGGGGAGUAA------------------ d.16.a.T.tenax.fasta ---------------------CGGGCGAAUAA------------------ d.16.a.S.acidocaldarius.fasta ---------------------CGGGGGAAUAA------------------ d.16.a.S.solfataricus.fasta ---------------------CGGGGGAAUAA------------------ d.16.a.S.solfataricus.2.fasta ---------------------CGGGGGAAUAA------------------ d.16.a.M.thermautotrophicus.1. ---------------------UUCUGGAAUAA------------------ d.16.a.M.thermautotrophicus.2. ---------------------UUCUGGAAUAA------------------ d.16.a.M.formicicum.fasta ---------------------UUUUGGAAUAA------------------ d.16.a.M.vannielii.fasta ---------------------UUGAGGAAUAA------------------ d.16.a.H.marismortui.rrnA.fast ---------------------UACAGGAACAA------------------ d.16.a.H.marismortui.rrnB.fast ---------------------UACAGGAACAA------------------ d.16.a.Halobacterium.sp.fasta ---------------------UGCACGAAUAA------------------ d.16.a.N.bangense.fasta ---------------------UGGUAGAAUAA------------------ d.16.a.N.innermongoliae.fasta ---------------------UCGCGGAAUAA------------------ d.16.a.H.volcanii.fasta ---------------------UCGAGGAAUAA------------------ d.16.a.M.hungatei.fasta ---------------------UGGUGAAGAAA------------------ d.16.a.P.torridus.fasta ---------------------AUAAGGAAUAA------------------ d.16.a.T.acidophilum.fasta ---------------------AUCAGGAAUAA------------------ a.16.e.G.ardeae.fasta -------------CGAGGCAGGCUCGU----------------------- d.16.e.G.intestinalis.fasta -------------CCAGGCAGGCCCGU----------------------- a.16.e.G.muris.fasta -------------UAAGGCGGGAGUGA----------------------- d.16.e.A.bracteata.fasta -------------CAACG------UGC----------------------- d.16.e.Glomus.sp.W3349.fasta -------------UAAAAUAGGA--------------------------- d.16.e.S.cerradensis.fasta -------------UAAAAUAGGA--------------------------- a.16.e.G.intraradices.fasta -------------UGAAAUAGGA--------------------------- d.16.e.S.culisetae.fasta -------------UAAAAUAGGA--------------------------- a.16.e.P.balamuthi.fasta GUUGGAGGUUUGAUAUGAGAGGAGAUUAUGAGUAGGUGGUUAUGAUCAUU d.16.e.A.flavus.fasta -------------UAGAAUAGGA--------------------------- d.16.e.T.caries.fasta -------------UAAAAUAGGA--------------------------- d.16.e.M.circinelloides.fasta -------------UGAAAUAUGA--------------------------C d.16.e.M.racemosus.fasta -------------UGAAAUAUGA--------------------------C d.16.e.R.oryzae.fasta -------------UGAAAUAUGA--------------------------C a.16.e.M.edulis.fasta ---------------GGGUGGCCGGAACGU-------------------- a.16.e.P.magellanicus.fasta ---------------GGGUGGCCGGAACAU-------------------- b.16.e.E.granulosus.fasta GUAGUCGUCGC--AGGUGUGGGCGGGUGUUGGGCAGUGCCUGCACACUCU d.16.e.D.melanogaster.fasta ----------------UGUGGGCCGGUACUA------------------- b.16.e.C.koreana.fasta ---------------GAGUGGCCAGCACGU-------------------- b.16.e.A.australis.fasta ---------------GGGUGUCCGGCACGU-------------------- b.16.e.O.utahensis.fasta ----------------GGCGGGCCGGCACGU------------------- b.16.e.A.salina.fasta ---------------GGGUGGCCGAUACGU-------------------- d.16.e.M.musculus.fasta ---------------GCGGGGCCCGAAGCGU------------------- d.16.e.R.norvegicus.fasta ---------------GCGGGGCCCGAAGCGU------------------- d.16.e.H.sapiens.fasta ---------------GCGGGGCCCGAAGCGU------------------- d.16.e.O.cuniculus.fasta ---------------GCGGGGCCCGAAGCGU------------------- d.16.e.X.borealis.fasta ---------------G-GGGGCCCGAAGCGU------------------- d.16.e.X.laevis.fasta ---------------G-GGGGCCCGAAGCGU------------------- d.16.e.A.castellanii.fasta -------------CAAAGCAGGCAGAUCCA-------------------- d.16.e.B.mandrillaris.fasta -------------CAAAGCAGACAAGUCAA-------------------- d.16.e.P.falciparum.A.fasta -------------CAAAGCAAACAGUUAAA-------------------- d.16.e.P.falciparum.S.fasta -------------CAUAACAGACGGGUAGUCAUGAUU------------- d.16.e.P.vivax.A.fasta -------------CAAAGCAAACAGAUAUA-------------------- d.16.e.P.vivax.O.fasta -------------CAAAGGAAACAGUUAUAUU--AUA------------- d.16.e.P.vivax.S.fasta -------------CAUAGCAAACAGAUACA-------------------- d.16.e.E.histolytica.fasta -------------UAAAGCAAAACAUUAUG-------------------- d.16.e.I.hoferi.fasta -------------CAAAGCAGGCUUAUGCU-------------------- d.16.e.Dermocystidium.sp.fasta -------------CAAAGCAGGCGAUUGCU-------------------- d.16.e.S.destruens.fasta -------------CAAAGCAGGCUAUCGCU-------------------- d.16.e.A.unguiculata.fasta -------------CAAAGCAGGCU-UACGC-------------------- d.16.e.D.grandis.fasta -------------CAAAGCAGGCUAUUUGC-------------------- d.16.e.A.macrogynus.fasta -------------CAAAGCAGGCUUUUUCU-------------------- d.16.e.B.emersonii.fasta -------------CAAAGCAGGCUUUUUUU-------------------- d.16.e.C.albicans.fasta -------------UAGGACCAU---------------------------- d.16.e.S.cerevisiae.fasta -------------UAGGACCAU---------------------------- d.16.e.N.crassa.fasta -------------UAGGACCGC---------------------------- d.16.e.P.anserina.fasta -------------UAGGACCGC---------------------------- d.16.e.C.immitis.fasta -------------UAGGACCGC---------------------------- d.16.e.L.major.fasta -------------UGGAGCUGUGCGACAAGUGCUU--------------- d.16.e.T.cruzi.fasta -------------UGGGGCAGUGUGACAAGCGGCUGGGUGG--------- d.16.e.T.brucei.fasta -------------UGGGGCCGCGUGCCUUGGGUCGG-------------- d.16.e.P.carinii.fasta -------------UAGGACCAU---------------------------- d.16.e.C.neoformans.fasta -------------CAAAGCAGGCAAUCG---------------------- d.16.e.Fungus.sp.QPX.fasta -------------CAAAGCAGGCAUUUG---------------------- d.16.e.U.maydis.fasta -------------CAAAGCAGGCCAUAGG--------------------- d.16.e.M.leidyi.fasta -------------CAAAGCAGGCAGUC--G-------------------- d.16.e.T.cystophora.fasta -------------CAAAGCAAGCAUACUAG-------------------- d.16.e.M.prolifera.fasta -------------CAAGGCAGGCUCUC--G-------------------- d.16.e.P.haeckeli.fasta -------------CAAAGCAAGCGUAACGC-------------------- d.16.e.E.rotunda.fasta -------------UAAAGCAGGCUUAUGCU-------------------- d.16.e.P.chromatophora.fasta -------------CCAAGCAAGCUUACGCU-------------------- d.16.e.A.majus.fasta -------------CAAAGCAAGCCU-ACGC-------------------- d.16.e.S.indicum.fasta -------------CAAAGCAAGCCU-ACGC-------------------- d.16.e.D.grandiflora.fasta -------------CAAAGCAAGCCU-ACGC-------------------- d.16.e.Pla.lanceolata.fasta -------------CAAAGCAAGCCU-ACGC-------------------- d.16.e.N.tabacum.fasta -------------CAAAGCAAGCCU-ACGC-------------------- d.16.e.A.thaliana.fasta -------------CAAAGCAAGCCU-ACGC-------------------- d.16.e.S.alba.fasta -------------CAAAGCAAGCCU-ACGC-------------------- d.16.e.S.tuberosum.fasta -------------CAAAGCAAGCCU-ACGC-------------------- d.16.e.F.x.ananassa.fasta -------------CAAAGCAAGCCU-ACGC-------------------- d.16.e.G.max.fasta -------------CAAAGCAAGCCU-ACGC-------------------- d.16.e.O.sativa.fasta -------------CAAAGCAAGCCA-UCGC-------------------- d.16.e.Z.mays.fasta -------------CAAAGCAAGCCA-UCGC-------------------- d.16.e.A.verticilliflorum.fast -------------CAAAGCAAGUUU-GUGC-------------------- d.16.e.G.spirotaenia.fasta -------------CAAAGCAGGCCU-AUGC-------------------- d.16.e.Staurastrum.sp.M752.fas -------------CAAAGCAGGCCU-AUGC-------------------- d.16.e.C.paradoxa.fasta -------------UAAAGCAGGCCU-ACGC-------------------- d.16.e.G.nostochinearum.fasta -------------UAAAGCAGGCCUUGCGC-------------------- d.16.e.G.wittrockiana.fasta -------------UCAAGCAGGCUG-UCGC-------------------- d.16.e.C.luteoviridis.fasta -------------CAAAGCAGGCCU-ACGC-------------------- d.16.e.O.longa.fasta -------------CUAGGCAGGCUUGCGCCG------------------- d.16.e.P.weissei.fasta -------------CCAGGCAGGCUAGCGCCG------------------- d.16.e.C.citrina.fasta -------------CCAGGCAGGCUUGCGCCG------------------- d.16.e.G.steinii.fasta -------------CCAGGCAGGCUCGCGCCG------------------- d.16.e.Ple.lanceolata.fasta -------------CCAGGCAGGCUCGCGCCG------------------- d.16.e.O.quadricornutus.fasta -------------CCAGGCAGGCUCGCGUCG------------------- d.16.e.S.lemnae.fasta -------------CCAGGCAGGCUUGCGCCG------------------- d.16.e.S.mytilus.fasta -------------CCAGGCAGGCUUGCGCCG------------------- d.16.e.E.mobilis.fasta -------------UCAGGCAGGCUUGCGCCG------------------- d.16.e.O.granulifera.1.fasta -------------CCAGGCAGGCUUGCGCCG------------------- d.16.e.O.granulifera.2.fasta -------------CCAGGCAGGCUUGCGCCG------------------- d.16.e.U.gallina.fasta -------------CCAGGCAGGCUUGCGCCG------------------- d.16.e.U.pisces.fasta -------------CCAGGCAGGCUUGCGCCG------------------- d.16.e.P.lepisma.fasta -------------CCAGGCAGGCUUGCGCCG------------------- d.16.e.U.grandis.fasta -------------UCAGGCAGGCUUGCGCCG------------------- d.16.e.B.coli.fasta -------------UCAAGCAGGCUUUUGCAA------------------- d.16.e.E.aediculatus.fasta -------------UCAGGCAGGCGUGCGCCG------------------- d.16.e.T.thermophila.fasta -------------CCAGGCAGGUUUUAGCCC------------------- d.16.e.Bangia.sp.NWT.fasta -------------CAAAGCAGGCCAAUGCCU------------------- d.16.e.Bangia.sp.VIS7.fasta -------------CAAAGCAGGCUAAUGCCC------------------- d.16.e.E.carnea.fasta -------------CAAAGCAGGCCAAUGCUG------------------- d.16.e.R.parvula.fasta -------------CAAAGCAGGCCAUUGCUG------------------- d.16.e.C.coeruleus.fasta -------------UAAAGCAGGCGGUUGCCG------------------- d.16.e.P.aerugineum.1.fasta -------------CAAAGCAGGCGUUUGCUG------------------- d.16.e.R.maculata.fasta -------------UAAAGCAGGCGAUUGCCG------------------- d.16.e.A.ambigua.fasta -------------CAAAGCAGGCUUAGGC-C-UU---------------- d.16.e.A.baicalensis.fasta -------------CAAAGCAGGCUUAGGC-C-UU---------------- d.16.e.S.nipponica.fasta -------------CAAAGCAGGCUUAUGC-CGCU---------------- d.16.e.C.radiatus.fasta -------------CAAAGCAGGCUUAUGC-CAAU---------------- d.16.e.C.criophilum.fasta -------------CAAAGCAGGCUUACGC-CGUU---------------- d.16.e.A.capitellata.fasta -------------CAAAGCAGGCUUACGC-CGUU---------------- d.16.e.S.pupula.fasta -------------CAAAGCAGGCUUAUGC-CGUU---------------- d.16.e.T.antarctica.fasta -------------CAAAGCAGGCUUAUGC-CUCU---------------- d.16.e.E.triangulatum.fasta -------------CAAAGCAGGCUUAUGC-CGUU---------------- d.16.e.A.bongranii.fasta -------------CAAAGCAGGCUUACGC-CGUU---------------- d.16.e.Pseudogomphonema.sp.fas -------------CAAAGCAGGCUUAUGC-CGUU---------------- d.16.e.D.tenue.fasta -------------CAAAGCAGGCUUACGC-CGUU---------------- d.16.e.G.marina.fasta -------------CAAAGCAGGCUUAUGC-CGUU---------------- d.16.e.Thalassionema.sp.fasta -------------CAAAGCAGGCUUAUGC-CGUU---------------- d.16.e.R.belgicae.fasta -------------CAAAGCAGGCUUGCAC-C-UU---------------- d.16.e.Undatella.sp.fasta -------------CAAAGCAGGCUUAUGC-CGYU---------------- d.16.e.C.belgica.fasta -------------CAAAGCAGGCUUAUGC-CGUU---------------- d.16.e.O.sinensis.fasta -------------CAAAGCAGGCUUACGC-CGUU---------------- d.16.e.D.brightwellii.fasta -------------CAAAGCAGGCUUAUGC-CGUU---------------- d.16.e.L.undulatum.fasta -------------CAAAGCAGGCUUACGC-CGUU---------------- d.16.e.T.eccentrica.fasta -------------UAAAGCAGGCUUAUGC-CGUU---------------- d.16.e.T.pseudonana.fasta -------------UAAAGCAGGCUUAUGC-CGUU---------------- d.16.e.S.costatum.fasta -------------UAAAGCAGGCUUAUGC-CGUU---------------- d.16.e.P.laevis.fasta -------------CAAAGCAGGCUUAUGC-CGCU---------------- d.16.e.L.borealis.fasta -------------CAAAGCAGACUUAUGU-CGUU---------------- d.16.e.P.pseudodenticulata.fas -------------CAAAGCAGACUUAUGU-CGUU---------------- d.16.e.B.mediterranea.fasta -------------CAAAGCAGGCUUAUGC-CGUU---------------- d.16.e.B.pacifica.fasta -------------CAAAGCAGGCUUAUGC-CGUU---------------- d.16.e.L.minuta.fasta -------------UAAAGCAGGCAAUCGC---UU---------------- d.16.e.L.danicus.fasta -------------CAAAGCAGGCUUAUGC-CA-U---------------- d.16.e.Chaetoceros.sp.fasta -------------CAAAGCAGGCUUAUGC-CGUU---------------- d.16.e.A.invadans.fasta -------------UAAAGCAGGCGUUUGCUCAUUU--------------- d.16.e.L.giganteum.fasta -------------UAAAGCAGGCGUUUGCUCAUU---------------- d.16.e.M.varians.fasta -------------CAAAGCAGGCAU-UGC---UGU--------------- d.16.e.B.hominis.fasta -------------CAAAGCAGGCGUUUGC----UU--------------- d.16.e.P.marinus.fasta -------------UCAAGCAGGCUUAU----------------------- d.16.e.T.gondii.fasta -------------UCAAGCAGGCUUGU----------------------- d.16.e.A.fundyense.fasta -------------UCAAGCAGGUGUUU----------------------- d.16.e.B.bigemina.fasta -------------UCAAGCAGAC-UUU----------------------- d.16.e.B.canis.fasta -------------UCAAGCAGAC-UUU----------------------- d.16.e.Babesia.sp.OKD.fasta -------------UCAAGCAGAC-UUG----------------------- d.16.e.B.microti.1.fasta -------------UCAAACAGGC-AUU----------------------- d.16.e.B.microti.2.fasta -------------UCAAACAGGC-AUU----------------------- d.16.e.B.microti.3.fasta -------------UCAAACAGGCCAUU----------------------- d.16.e.B.microti.4.fasta -------------UCAAACAGGC-AUU----------------------- d.16.e.B.microti.5.fasta -------------UCAAACAGGC-AUU----------------------- d.16.e.B.rodhaini.fasta -------------UCAAACAGGC-AAU----------------------- d.16.e.B.gibsoni.fasta -------------UCAAGCAGGC-UUU----------------------- d.16.e.B.bovis.fasta -------------UCAAGCAGGU--UU----------------------- d.16.e.J.libera.fasta -------------CCAAGCAGGCAU-----A------------------- d.16.e.R.americana.fasta -------------CCAAGCAGGCGCUUUGCG------------------- d.16.e.B.ostreae.fasta -------------CAAAGCAGGCUCGCGCCU------------------- d.16.e.A.dasyae.fasta -------------CAAAGCAGGCGUUU-GCCG------------------ d.16.e.A.hermannii.fasta -------------CAAAGCAGGCGUUU-GCCG------------------ d.16.e.N.helminthoides.fasta -------------CAAAGCAGGCGUUU-GCCG------------------ d.16.e.B.gelatinosum.fasta -------------CAAAGCAGGCGUUU-GCCG------------------ d.16.e.N.tortuosa.fasta -------------CAAAGCAGGCGUUU-GCCG------------------ d.16.e.T.hispida.fasta -------------CAAAGCAGGCGUUU-GUCG------------------ d.16.e.T.violacea.4.fasta -------------CAAAGCAGGCGUUU-GUCG------------------ d.16.e.T.violacea.1.fasta -------------CAAAGCAGGCGUUU-GUCG------------------ d.16.e.T.violacea.2.fasta -------------CAAAGCAGGCGUUU-GUCG------------------ d.16.e.N.shawii.fasta -------------CAAAGCAGGCGUUU-GCCG------------------ d.16.e.B.investiens.fasta -------------CAAAGCAGGCGUUU-GCCG------------------ d.16.e.B.macrosporum.fasta -------------CAAAGCAGGCGUUU-GCCG------------------ d.16.e.A.plicata.fasta -------------CAAAGCAGGCGUUU-GCCG------------------ d.16.e.C.officinalis.fasta -------------CAAAGCAGGCAAUU-GCCG------------------ d.16.e.R.carriebowensis.fasta -------------CAAAGCAGGCGUUU-GCCG------------------ d.16.e.B.hamifera.fasta -------------CAAAGCGGGCGUUU-GCCA------------------ d.16.e.G.vagum.fasta -------------CAAAGCAGGCGUUU-GCCU------------------ d.16.e.C.crispus.fasta -------------CAAAGCAGGCGUUU-GCCA------------------ d.16.e.H.plana.fasta -------------CAAAGCAGGCGUUU-GCCC------------------ d.16.e.R.leptophylla.fasta -------------CAAAGCAGGCGUUU-GCCG------------------ d.16.e.P.pulvinata.fasta -------------CAAAGCGGGCGUUU-GCCA------------------ d.16.e.C.rubrum.fasta -------------CAAAGCGGGCGUUU-GCCA------------------ d.16.e.Gracilariopsis.sp.fasta -------------CAAAGCAGGCGAUU-GCCC------------------ d.16.e.B.moritziana.fasta -------------CAAAGCAAGCGAUU-GCCC------------------ d.16.e.H.rubra.fasta -------------CAAAGCAGGCGAUGAGCCG------------------ d.16.e.D.grisea.fasta -------------UAAAGCAGGCGAAUAGCUG------------------ d.16.e.N.fowleri.fasta -------------UAAAGCGGGCUAUGAUACUCUG--------------- d.16.e.N.gruberi.fasta -------------UAAAGCGGGCUAUGAUACUCUG--------------- a.16.e.Hexamita.sp.fasta -------------CAUUACAGGGAAACC---------------------- d.16.e.T.foetus.fasta -------------CACUGUGAACAAAUCA--------------------- d.16.e.A.khaliulini.fasta -------------------------------------------------- d.16.e.E.aedis.fasta -------------------------------------------------- d.16.e.A.connecticus.fasta -------------------------------------------------- d.16.e.I.barri.fasta -------------------------------------------------- d.16.e.A.ferocious.fasta -------------------------------------------------- d.16.e.Amblyospora.sp.fasta -------------------------------------------------- d.16.e.C.lunata.fasta -------------------------------------------------- d.16.e.P.anophelis.fasta -------------------------------------------------- d.16.e.Hazardia.sp.fasta -------------------------------------------------- d.16.e.H.milleri.fasta -------------------------------------------------- d.16.e.P.simulii.fasta -------------------------------------------------- d.16.e.W.palustris.fasta -------------------------------------------------- d.16.e.Nosema.sp.03.fasta -------------------------------------------------- d.16.e.Nosema.sp.05.fasta -------------------------------------------------- d.16.e.Endoreticulatus.sp.fast -------------------------------------------------- d.16.e.Nosema.sp.02.fasta -------------------------------------------------- d.16.e.N.spodopterae.fasta -------------------------------------------------- d.16.e.N.trichoplusiae.fasta -------------------------------------------------- d.16.e.N.bombycis.27.fasta -------------------------------------------------- d.16.e.N.bombycis.02.fasta -------------------------------------------------- d.16.e.V.imperfecta.fasta -------------------------------------------------- d.16.e.N.furnacalis.fasta -------------------------------------------------- d.16.e.Microsporidium57864.fas -------------------------------------------------- d.16.e.Vairimorpha.sp.C21.fast -------------------------------------------------- d.16.e.N.oulemae.fasta -------------------------------------------------- d.16.e.N.necatrix.fasta -------------------------------------------------- d.16.e.V.necatrix.fasta -------------------------------------------------- d.16.e.N.apis.fasta -------------------------------------------------- d.16.e.O.occidentalis.fasta -------------------------------------------------- d.16.e.Microsporidium.sp.DP119 -------------------------------------------------- d.16.e.V.corneae.fasta -------------------------------------------------- d.16.e.A.michaelis.fasta -------------------------------------------------- d.16.e.T.contejeani.fasta -------------------------------------------------- d.16.e.E.hellem.fasta -------------------------------------------------- d.16.e.Encephalitozoon.sp.fast -------------------------------------------------- d.16.e.E.cuniculi.fasta -------------------------------------------------- d.16.e.O.colligata.fasta -------------------------------------------------- d.16.e.E.salmonis.fasta -------------------------------------------------- d.16.e.N.salmonis.fasta -------------------------------------------------- d.16.e.Enterocytozoonidae.sp.f -------------------------------------------------- d.16.e.E.bieneusi.fasta -------------------------------------------------- d.16.e.B.algerae.fasta -------------------------------------------------- d.16.e.T.solenopsae.fasta -------------------------------------------------- d.16.e.V.acridophagus.fasta -------------------------------------------------- d.16.e.Bacillidium.sp.fasta -------------------------------------------------- d.16.e.P.cristatellae.fasta -------------------------------------------------- d.16.e.Pleistophora.sp.fasta -------------------------------------------------- d.16.e.O.operophterae.fasta -------------------------------------------------- d.16.e.F.magnivora.fasta -------------------------------------------------- d.16.e.G.atherinae.fasta -------------------------------------------------- d.16.e.Ichthyosporidium.sp.fas -------------------------------------------------- d.16.e.L.acerinae.fasta -------------------------------------------------- d.16.e.H.anguillarum.fasta -------------------------------------------------- d.16.e.P.mirandellae.fasta -------------------------------------------------- d.16.e.T.hominis.fasta -------------------------------------------------- d.16.e.V.culicis.fasta -------------------------------------------------- d.16.e.P.hippoglossoideos.fast -------------------------------------------------- d.16.e.Microgemma.sp.fasta -------------------------------------------------- d.16.e.S.lophii.fasta -------------------------------------------------- d.16.e.Pleistophora.sp.LS.fast -------------------------------------------------- d.16.e.D.gammarellum.fasta -------------------------------------------------- d.16.e.M.prosopium.fasta -------------------------------------------------- d.16.e.A.scoticae.fasta -------------------------------------------------- d.16.e.P.whitei.fasta -------------------------------------------------- a.16.c.C.coccineum.fasta ----------------AGCAUCGGCUAACUCU-GUGCCAGCAGCCGCGGU a.16.c.C.ruber.fasta ----------------AGCAUCGGCUAACUCU-GUGCCAGCAGCCGCGGA d.16.c.N.tabacum.fasta ----------------AGCAUCGGCUAACUCU-GUGCCAGCAGCCGCGGU d.16.c.S.oleracea.fasta ----------------AGCAUCGGCUAACUCU-GUGCCAGCAGCCGCGGU d.16.c.Z.mays.fasta ----------------AGCAUCGGCUAACUCU-GUGCCAGCAGCCGCGGU d.16.c.M.polymorpha.fasta ----------------AGCAUCGGCUAACUCU-GUGCCAGCAGCCGCGGU d.16.c.R.communis.fasta ----------------AGCAUCGGCUAACUCU-GUGCCAGCAGCCGCGGU d.16.c.C.vulgaris.fasta ----------------AGCAUCGGCUAACUCU-GUGCCAGCAGCCGCGGU d.16.c.P.wickerhamii.fasta ----------------AGCAUCGGCUAACUCU-GUGCCAGCAGCCGCGGU d.16.c.P.minor.fasta ----------------AGCAUCGGCUAACUCU-GUGCCAGCAGCCGCGGU d.16.c.N.olivacea.fasta ----------------AGCAUCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.c.P.parkeae.fasta ----------------AGCAUCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.c.C.reinhardtii.fasta ----------------AGCACCGGCUAACUCU-GUGCCAGCAGCCGCGGU b.16.m.A.castellanii.fasta -----------------GCCCUGACUAACUUC-GUGCCAGCAGUCGCGGU d.16.c.P.thurberi.fasta -----------------GUAUUGGCUAACUCCUGUGCCAGCAGCCGCGGU b.16.m.C.crispus.fasta -----------------GUCCUGGCUAAUUUC-GUGCCAGCAGCCGCGGU d.16.c.T.gondii.fasta -----------------GUAUCGGCUAACUCC-GUGCCAGCAGCCGCGGU b.16.m.N.crassa.fasta CUUGACACAUGAGGUAUAUACUUCUAGUCCAU-AUUGGGGGGAGACUCCA b.16.m.P.anserina.fasta -------------------------------------------------- b.16.m.P.chrysogenum.fasta -------------------------------------------------- b.16.m.E.nidulans.fasta -------------------------------------------------- b.16.m.S.cerevisiae.fasta UUAAAAAUAAAAUCCAUAAA-UAAUUAAAAUA-AUGAUAUUAAUUACCAU b.16.m.W.saturnus.m.fasta UUAUAAAUUAAAGUUAUAGACUAGCGAGAAUA-AUGAUAGUAGCUAUCAU b.16.m.P.minor.fasta UU---AAUAAAAGUU-CAAUCUAAUUAUG-----UGCCAGCAGAUGCGGU d.16.c.P.falciparum.fasta AUAAAAAUAAAAAAUAGUAU-UUGCUAUUUCU-GUGCCAGCAGCAGCGGU d.16.c.B.bovis.fasta UC--GAAUUAUAAGAAAAUAUCGGCAAACUCU-GUGCCAGCAGCCGCGUA b.16.m.T.pyriformis.fasta AAACGAAGAAGAUAGACAAUAUUGUAAAGUUU-AGUGCGAGAAUUAACAA d.16.m.S.sinuspaulianus.fasta AAAUCGCAAAUGUGUCAUUUGUGAUAAAGU----AAGAGAAAAUUA---- b.16.m.P.tetraurelia.fasta --GCCAGAAACGAGUAUAAUUAAGCUAAGUUU--UGUUAGAAGCUAUGGC b.16.m.D.discoideum.fasta ---------------------UGACAAAAAUU-AAAGAAGAAGUCCCGGC d.16.m.P.polycephalum.fasta UAAAUUACAUUUUGUUUGUUAGACUAAAAUAC-UCGAGCAAAAAUGCCUU b.16.m.P.littoralis.fasta -----------------------AUUAAGU----UAAGAAUAAGUCCCGA b.16.m.P.wickerhamii.fasta CAACGUAUCAUCAAAAAGUCCCGGCUAAUCUC-GUGCCAGCAGCCGCGGU d.16.c.H.africana.fasta -----------------GCAUCGGCUAACUUU-GUGCCAGCAGCCGCGGU d.16.c.C.fragile.fasta ----------------AGCAUCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.c.C.sertularioides.fasta ----------------AGCAUCGGCUAACUUC-GUGCCAGCAGCCGCGGU d.16.c.C.humicola.fasta ------------------CUCCGGCUAACUCU-GUGCCAGCAGUCNCGGU d.16.c.P.uvella.fasta ------------------AAUCGUCUAACUUU-GUGCCACGAGACACGGU a.16.c.G.nostochinearum.fasta ----------------AGCAUCGGCUAACUCC-GUGCCAGCAGCCGCGGU a.16.c.G.wittrockiana.fasta ----------------AGCAUCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.c.C.paradoxa.fasta ----------------AGCAUCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.y.C.paradoxa.fasta ----------------AGCAUCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.c.Cryptomonas.sp.fasta ----------------AGCAUCGGCUAACUCU-GUGCCAGCAGCCGCGGU d.16.c.P.palmata.fasta ----------------AGCAUCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.c.H.akashiwo.fasta ----------------AGCAUCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.c.S.pseudocostatum.fasta ----------------AGCAUCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.c.P.littoralis.fasta ----------------AGCAUCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.c.C.caldarium.fasta ----------------AGCAUCGGCUAACUCC-GUGCCAGCAGCCGCGGU a.16.c.E.huxleyi.fasta ----------------AGCAUCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.c.E.gracilis.fasta ----------------AGCAUCGGCUAAUUCC-GUGCCAGCAGCCGCGGU d.16.b.Anabaena.sp.fasta -----------------GCAUCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.Chlorogloeopsis.PCC7518 -----------------GCAUCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.Synechococcus.sp.fasta -----------------GCCUCGGCUAAUUCC-GUGCCAGCAGCCGCGGU d.16.b.Synechocystis.PCC6803.G -----------------GCAUCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.O.agardhii.fasta -----------------GCAUCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.Pleurocapsa.7516.fasta -----------------GCAUCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.M.aeruginosa.fasta -----------------GCCUCGGCUAACUCC-GUGCCAGCAGCCGCGGU b.16.m.C.reinhardtii.fasta -------------------ACCCCCCAAGCAC-GUGCCAGAAGGGUCGGU d.16.m.C.eugametos.fasta ------------------------CAAAUUCU-GUGCCAGCAGCCGCGGU b.16.m.M.senile.fasta ------------------------CAAAUUAA-GUGCCAGCCGACGCGGU d.16.b.S.pneumoniae.fasta ---------------AAGGGACGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.pyogenes.fasta ---------------AAGGGACGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.B.anthracis.fasta ---------------AAGCCACGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.B.cereus.1.fasta ---------------AAGCCACGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.E.faecalis.fasta ---------------AAGCCACGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.E.faecium2.fasta ---------------AAGCCACGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.L.monocytogenes.fasta ---------------AAGCCACGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.B.subtilis.fasta ---------------AAGCCACGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.B.subtilis.GEN.fasta ---------------AAGCCACGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.B.halodurans.fasta ---------------AAGCCACGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.aureus.fasta ---------------AAGCCACGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.aureus.GEN.fasta ---------------AAGCCACGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.L.lactis.GEN.fasta ---------------AAGGGACGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.pyogenes.GEN.fasta ---------------AAGGGACGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.L.acidophilus.fasta ---------------AAGUCACGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.M.capricolum.fasta ---------------AAGCCACGGCUAACUAU-GUGCCAGCAGCCGCGGU d.16.b.M.mycoides.fasta ---------------AAGCCACGGCUAACUAU-GUGCCAGCAGCCGCGGU d.16.b.E.rhusiopathiae.fasta ---------------AAGCCACGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.C.innocuum.fasta ---------------AAGCCACGGCUAACUAC-GUGCCAGYAGCCGCGGU d.16.b.M.genitalium.fasta ---------------AAGUGACGACUAACUAU-GUGCCAGCAGUCGCGGU d.16.b.M.pneumoniae.GEN.fasta ---------------AAGUGACGACUAACUAU-GUGCCAGCAGUCGCGGU d.16.b.M.pneumoniae.fasta ---------------AAGUGACGACUAACUAU-GUGCCAGCAGUCGCGGU d.16.b.M.gallisepticum.fasta ---------------AAGUAACGACUAACUAU-GUGCCAGCAGUCGCGGU d.16.b.U.urealyticum.fasta ---------------AAGUAUCGGCUAACUAU-GUGCCAGCAGCCGCGGU d.16.b.U.urealyticum.GEN.fasta ---------------AAGUAUCGGCUAACUAU-GUGCCAGCAGCCGCGGU d.16.b.M.hyopneumoniae.fasta ---------------AAGCGACGGCAAACUAU-GUGCCAGCAGCCGCGGU d.16.b.F.necrophorum.fasta ---------------AAGCGACGGCUAAAUAC-GUGCCAGCAGCCGCGGU d.16.b.F.nucleatum.fasta ---------------AAGUGACGGCUAAAUAC-GUGCCAGCAGCCGCGGU d.16.b.S.moniliformis.fasta ---------------AAGCGACGGCUAAAUAC-GUGCCAGCAGCCGCGGU d.16.b.C.botulinum.F.fasta ---------------AAGCCACGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.C.tetani.fasta ---------------AAGCCACGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.C.perfringens.fasta ---------------AAGCCACGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.C.difficile.fasta ---------------AAGCCC-GGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.E.brachy.fasta ---------------AAGCCCCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.Epulopiscium.sp.fasta ---------------AAGCCCCGGCUAAUUAC-GUGCCAGCAGCCGCGGU d.16.b.H.chlorum.fasta ---------------AAGCCCCGGCUAACUAC-GUGCCAGCAGCCGCGGU b.16.m.G.max.fasta -----------------GCCCCGGCUAACUCC-GUGCCAGCAGCCGCGGU b.16.m.O.berteriana.fasta -----------------GCCCCGGCUAACUCC-GUGCCAGCAGCCGCGGU b.16.m.S.cereale.fasta -----------------GCCCCGGCUAACUCC-GUGCCAGCAGCCGCGGU b.16.m.T.aestivum.fasta -----------------GCCCCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.m.Z.mays.fasta -----------------GCCCCGGCUAACUCC-GUGCCAGCAGCCGCGGU b.16.m.M.polymorpha.fasta -----------------GCCCCGGCUAACUCC-GUGCCAGCAGCCGCGGU b.16.m.N.olivacea.fasta -----------------GCCCCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.G.liquefaciens.fasta -----------------GCCCCGGCUAACUUC-GUGCCAGCAGCCGCGGU d.16.b.B.japonicum.fasta -----------------GCCCCGGCUAACUUC-GUGCCAGCAGCCGCGGU d.16.b.R.acidophilus.fasta -----------------GCCCCGGCUAACUUC-GUGCCAGCAGCCGCGGU d.16.b.A.caulinodans.fasta -----------------GCCCCGGCUAACUUC-GUGCCAGCAGCCGCGGU d.16.b.B.quintana.fasta -----------------GCCCCGGCUAACUUC-GUGCCAGCAGCCGCGGU d.16.b.M.loti.fasta -----------------GCCCCGGCUAACUUC-GUGCCAGCAGCCGCGGU d.16.b.A.tumefaciens.fasta -----------------GCCCCGGCUAACUUC-GUGCCAGCAGCCGCGGU d.16.b.B.bacilliformis.fasta -----------------NCCCCGGCUAACUUC-GUGCCAGCAGCCGCGGU d.16.b.B.henselae.fasta -----------------GCCCCGGCUAACUUC-GUGCCAGCAGCCGCGGU d.16.b.B.melitensis.fasta -----------------GCCCCGGNUAACUUC-GUGCCAGCAGCCGCGGU d.16.b.R.orientis.fasta -----------------GCCCCGGCUAACUUC-GUGCCAGCAGCCGCGGU d.16.b.Methylobacterium.sp.fas -----------------GCCCCGGCUAACUUC-GUGCCAGCAGCCGCGGU d.16.b.R.bellii.fasta -----------------GCCCCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.R.felis.URRWXCal2.fasta -----------------GCCCCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.R.prowazekii.fasta -----------------GCCCCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.R.prowazekii.GEN.fasta -----------------GCCCCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.R.rickettsii.fasta -----------------GCCCCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.A.calcoaceticus.fasta -----------------GCACCGGCUAACUCU-GUGCCAGCAGCCGCGGU d.16.b.P.pacificensis.fasta -----------------GCACCGGCUAACUCU-GUGCCAGCAGCCGCGGU d.16.b.C.marismortui.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.H.halodenitrificans.fas -----------------GCACNGGCUAACUCN-GUGCCAGCAGCCGCGGU d.16.b.P.aeruginosa.fasta -----------------GCACCGGCUAACUUC-GUGCCAGCAGCCGCGGU d.16.b.P.aeruginosa.GEN.fasta -----------------GCACCGGCUAACUUC-GUGCCAGCAGCCGCGGU d.16.b.Pseudomonas.sp.fasta -----------------GCACCGGCUAACUUC-GUGCCAGCAGCCGCGGU d.16.b.P.putida.fasta -----------------GCACCGGCUAACUCU-GUGCCAGCAGCCGCGGU d.16.b.C.burnetii.fasta -----------------GCACUGGCUAACUCU-GUGCCAGCAGCCGCGGU d.16.b.M.capsulatus.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.L.pneumophila.1.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCNCGGU d.16.b.L.pneumophila.2.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.A.vinosum.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.Beggiatoa.sp.fasta -----------------GCACCGGCUAACUCU-GUGCCAGCAGCCGCGGU d.16.b.A.hydrophila.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.S.putrefaciens.fasta -----------------GGACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.C.freundii.fasta -----------------GCACCGGCUAACUCN-NUGCCAGCAGCCNCGGU d.16.b.S.dysenteriae.1.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.K.pneumoniae.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.P.shigelloides.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.Y.pestis.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.Y.pseudotuberculosis.fa -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.S.dysenteriae.2.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.E.coli.0157G.GEN.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.E.coli.EDL.GEN.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.E.coli.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.E.coli.K12.GEN.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU h.16.b.E.coli.hlxnum.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU m.16.b.E.coli.mhg.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU s.16.b.E.coli.schem.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.S.typhimurium.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.S.marcescens.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.E.tarda.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.P.vulgaris.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.V.cholerae4.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.V.cholerae5.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.V.cholerae2.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.V.cholerae6.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.V.cholerae.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.V.cholerae.GEN.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.V.parahaemolyticus.fast -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.H.influenzae7.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.H.influenzae8.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.H.influenzae6.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.H.influenz.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.H.influenzae.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.P.multocida.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.P.multocida.GEN.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.X.albilineans.fasta -----------------GCACCGGCUAACUUC-GUGCCAGCAGCCGCGGU d.16.b.X.campestris.fasta -----------------GCACCGGCUAACUUC-GUGCCAGCAGCCGCGGU d.16.b.X.fastidiosa.GEN.fasta -----------------GCACCGGCUAACUUC-GUGCCAGCAGCCGCGGU d.16.b.D.nodosus.fasta -----------------GCACCGGCUNACUCC-GUGCCAGCAGCCGCGGU d.16.b.F.tularensis.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.B.parapertussis.fasta -----------------GCACCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.B.pertussis.fasta -----------------GCACCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.B.bronchiseptica2.fasta -----------------GCACCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.u.proteobacterium.fasta -----------------GCACCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.B.mallei.fasta -----------------GCACCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.Burkholderia.sp.fasta -----------------GCACCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.N.meningitidis.MD58.GEN -----------------GCACCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.N.meningitidis.Z2491.GE -----------------GCACCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.N.gonorrhoeae.fasta -----------------GCACCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.C.testosteroni.fasta -----------------GCACCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.D.desulfuricans.fasta -----------------GCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.M.xanthus.fasta -----------------GCACCGGCUAACUCU-GUGCCAGCAGCCGCGGU d.16.b.D.thermophilus.fasta -----------------GCCCCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.B.burgdorferi.fasta ----------------AGCCCCGGCUAAUUAC-GUGCCAGCAGCCGCGGU d.16.b.B.burgdorferi.GEN.fasta ----------------AGCCCCGGCUAAUUAC-GUGCCAGCAGCCGCGGU d.16.b.B.hermsii.fasta ----------------AGCCCCGGCUAAUUAC-GUGCCAGCAGCCGCGGU d.16.b.S.aurantia.fasta ----------------AGCCCCGGCUAAUUAC-GUGCCAGCAGCCGCGGU d.16.b.T.pallidum.A.fasta ----------------AGCCCCGGCUAAUUAC-GUGCCAGCAGCCGCGGU d.16.b.L.illini.fasta ----------------AGCACCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.L.interrogans.fasta ----------------AGCACCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.C.trachomatis.GEN.fasta ----------------AGCACCGGCUAACUCC-GUGCCAGCAGCUGCGGU d.16.b.C.trachomatis.L2.fasta ----------------AGCACCGGCUAACUCC-GUGCCAGCAGCUGCGGU d.16.b.C.muridarum.fasta ----------------AGCACCGGCUAACUCC-GUGCCAGCAGCUGCGGU d.16.b.C.pneumoniae.AR39.fasta ----------------AGCACCGGCUAACUCC-GUGCCAGCAGCUGCGGU d.16.b.C.pneumoniae.fasta ----------------AGCACCGGCUAACUCC-GUGCCAGCAGCUGCGGU d.16.b.C.pneumoniae.J138.fasta ----------------AGCACCGGCUAACUCC-GUGCCAGCAGCUGCGGU d.16.b.C.pneumoniae.CWL029.fas ----------------AGCACCGGCUAACUCC-GUGCCAGCAGCUGCGGU d.16.b.C.psittaci.fasta ----------------AGCACCGGCUAACUCC-GUGCCAGCAGCUGCGGU d.16.b.D.radiodurans.1.fasta ----------------AGCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.D.radiodurans.GEN.fasta ----------------AGCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.B.fragilis.fasta ----------------AGGAUCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.P.gingivalis.fasta ----------------AGCAUCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.C.vibrioforme.fasta ----------------AGCCACGGCUAACUCU-GUGCCAGCAGCCGCGGU d.16.b.C.jejuni.fasta ----------------AGCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.C.jejuni.GEN.fasta ----------------AGCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.C.sputorum.fasta ----------------AGCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.H.pylori.26695.GEN.fast ----------------AGCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.H.pylori.J99.GEN.fasta ----------------AGCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.H.pylori2.fasta ----------------AGCACCGGCUAACUCC-GUGCCAGCAGCCGCGGU d.16.b.A.capsulatum.fasta ----------------AGCCCCGGCUAACUUC-GUGCCAGCAGCCGCGGU d.16.b.H.foetida.fasta ----------------AGCCCCGGCUAACUCU-GUGCCAGCAGCCGCGGU d.16.b.A.globiformis.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.M.luteus.fasta ----------------AGCACCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.Frankia.sp.fasta ----------------AGCACCGGCCAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.bottropensis.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.scabiei.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.neyagawaensis.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.diastatochromogenes.f ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.Streptomyces.sp.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.acidiscabies.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.griseus.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.ornatus.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.subrutilus.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.bikiniensis.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.galbus.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.hygroscopicus.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.lincolnensis.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.coelicolor.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.tendae.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.ambofaciens.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.eurythermus.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.nodosus.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.sampsonii.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.glaucescens.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.pseudogriseolus.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.caelestis.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.bluensis.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.espinosus.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.mashuensis.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.rimosus.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.limosus.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.odorifer.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.felleus.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.albidoflavus.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.gougerotii.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.rutgersensis.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.intermedius.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.thermodiastaticus.fas ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.thermoviolaceus.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.thermovulgaris.1.fast ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.thermovulgaris.2.fast ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.macrosporus.fasta ----------------AGCACCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.megasporus.fasta ----------------AGCACCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.S.thermolineatus.fasta ----------------AGCACCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.M.tuberculosis.2.fasta ----------------AGCACCGGCCAACUAC-GUGCCAGCAGCCGCGGU d.16.b.M.tuberculosis.3.fasta ----------------AGCACCGGCCAACUAC-GUGCCAGCAGCCGCGGU d.16.b.M.avium.fasta ----------------AGCACCGGCCAACUAC-GUGCCAGCAGCCGCGGU d.16.b.M.leprae.fasta ----------------AGCACCGGCCAACUAC-GUGCCAGCAGCCGCGGU d.16.b.M.leprae.GEN.fasta ----------------AGCACCGGCCAACUAC-GUGCCAGCAGCCGCGGU d.16.b.M.tuberculosis.CDC1551. ----------------AGCACCGGCCAACUAC-GUGCCAGCAGCCGCGGU d.16.b.M.tuberculosis.GEN.fast ----------------AGCACCGGCCAACUAC-GUGCCAGCAGCCGCGGU d.16.b.N.asteroides.fasta ----------------AGCACCGGCCAACUAC-GUGCCAGCAGCCGCGGU d.16.b.R.erythropolis.fasta ----------------AGCACCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.C.diphtheriae.fasta ----------------AGCACCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.A.israelii.fasta ----------------AGCGCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.B.hyodysenteriae.fasta ----------------AGCCUCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.G.subterranea.fasta -----------------GCCCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.P.miotherma.fasta -----------------GUCCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.B.andersonii.fasta -----------------GCCCCGGCUAAUUAC-GUGCCAGCAGCCGCGGU d.16.b.H.aurantiacus.fasta -----------------GGCCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.Leptospirillium.sp.fast -----------------GCCACGGCUAACUCU-GUGCCAGCAGCCGCGGU d.16.b.A.aeolicus.fasta -----------------GGGACGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.A.pyrophilus.fasta -----------------GGGACGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.T.maritima.fasta -----------------GCCCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.T.maritima.GEN.fasta -----------------GCCCCGGCUAACUAC-GUGCCAGCAGCCGCGGU n.16.b.T.thermophilus.2.num.fa -----------------GCGCCGGCCAACUCC-GUGCCAGCAGCCGCGGU s.16.b.T.thermophilus.2.schem. -----------------GCGCCGGCCAACUCC-GUGCCAGCAGCCGCGGU d.16.b.T.thermophilus.2.fasta -----------------GCGCCGGCCAACUCC-GUGCCAGCAGCCGCGGU s.16.b.T.thermophilus.1.schem. -----------------GCGCCGGCCAACUCC-GUGCCAGCAGCCGCGGU n.16.b.T.thermophilus.1.num.fa -----------------GCGCCGGCCAACUCC-GUGCCAGCAGCCGCGGU d.16.b.T.thermophilus.1.fasta -----------------GCGCCGGCCAACUCC-GUGCCAGCAGCCGCGGU d.16.b.T.aquaticus.fasta -----------------GCGCCGGCCAACUCC-GUGCCAGCAGCCGCGGU d.16.b.T.roseum.fasta -----------------GUCCCGGCUAACUAC-GUGCCAGCAGCCGCGGU d.16.b.P.marina.fasta -----------------GGACGGGCUAAGUUC-GUGCCAGCAGCCGCGGU d.16.b.P.staleyi.fasta -----------------GGGCCGGCUAAUCUC-GUGCCANNAGCCGCGGU d.16.b.P.Schlesner.fasta -----------------GCUCGGGCUAAGUUC-GUGCCAGCAGCCGCGGU d.16.b.G.obscuriglobus.1.fasta -----------------GCUCGGGCUAAGUUC-GUGCCAGCAGCCGCGGU d.16.b.I.pallida.fasta -----------------GCACGGGCUAAGUUC-GUGCCAGCAGCCGCGGU d.16.a.P.abyssi.fasta -----------------GGGCUGGGCAAGGCCGGUGGCAGCCGCCGCGGU d.16.a.P.horikoshii.fasta -----------------GGGCUGGGCAAGGCCGGUGGCAGCCGCCGCGGU d.16.a.P.furiosus.fasta -----------------GGGCUGGGCAAGGCCGGUGGCAGCCGCCGCGGU d.16.a.T.celer.fasta -----------------GGGCUGGGCAAGGCCGGUGGCAGCCGCCGCGGU d.16.a.A.fulgidus.fasta -----------------GGGCCGGGCAAGGCCGGUGGCAGCCGCCGCGGU d.16.a.N.equitans.fasta -----------------GCGGUGGGCAAGAGGGGUGGCAGCCGCCGCGGG d.16.a.A.pernix.K1.fasta -----------------GCGGGGGGCAAGACUGGUGUCAGCCGCCGCGGU d.16.a.P.occultum.fasta -----------------GCGGGGGGCAAGUCUGGUGUCAGCCGCCGCGGU d.16.a.T.tenax.fasta -----------------GCGGGGGGUAAGUCUGGUGUCAGCCGCCGCGGU d.16.a.S.acidocaldarius.fasta -----------------GCGGGGGGCAAGUCUGGUGUCAGCCGCCGCGGU d.16.a.S.solfataricus.fasta -----------------GCGGGGGGCAAGUCUGGUGUCAGCCGCCGCGGU d.16.a.S.solfataricus.2.fasta -----------------GCGGGGGGCAAGUCUGGUGUCAGCCGCCGCGGU d.16.a.M.thermautotrophicus.1. -----------------GGGCUGGGCAAGACCGGUGCCAGCCGCCGCGGU d.16.a.M.thermautotrophicus.2. -----------------GGGCUGGGCAAGACCGGUGCCAGCCGCCGCGGU d.16.a.M.formicicum.fasta -----------------GAGCUGGGCAAGACCGGUGCCAGCCGCCGCGGU d.16.a.M.vannielii.fasta -----------------GGGCUGGGCAAGUUCGGUGCCAGCAGCCGCGGU d.16.a.H.marismortui.rrnA.fast -----------------GGACUGGGCAAGACCGGUGCCAGCCGCCGCGGU d.16.a.H.marismortui.rrnB.fast -----------------GGACUGGGCAAGACCGGUGCCAGCCGCCGCGGU d.16.a.Halobacterium.sp.fasta -----------------GGACUGGGCAAGACCGGUGCCAGCCGCCGCGGU d.16.a.N.bangense.fasta -----------------GUGCUGGGCAAGACCGGUGCCAGCCGCCGCGGU d.16.a.N.innermongoliae.fasta -----------------GUGCUGGGCAAGACCGGUGCCAGCCGCCGCGGU d.16.a.H.volcanii.fasta -----------------GAGCUGGGCAAGACCGGUGCCAGCCGCCGCGGU d.16.a.M.hungatei.fasta -----------------GGGCCGGGCAAGACCGGUGCCAGCCGCCGCGGU d.16.a.P.torridus.fasta -----------------GGGCUGGGUAAGACGGGUGCCAGCCGCCGCGGU d.16.a.T.acidophilum.fasta -----------------GGGCUGGGCAAGACGGGUGCCAGCCGCCGCGGU a.16.e.G.ardeae.fasta --------------------------------UGGACCUACCGCCCGG-- d.16.e.G.intestinalis.fasta --------------------------------UGGACCCGCCGCGUGG-- a.16.e.G.muris.fasta --------------------------------GUACGAGAAAGCCCGG-- d.16.e.A.bracteata.fasta --------------------------------UAGGACCUCCGCGAGU-- d.16.e.Glomus.sp.W3349.fasta CGGCA-------------------------UGAUUCUAUUUUGUU----- d.16.e.S.cerradensis.fasta CGG---------------------------UGGUCCUGUUUUGUU----- a.16.e.G.intraradices.fasta CGUU--------------------------CGAUCUUAUUUUGUU----- d.16.e.S.culisetae.fasta CUU---------------------------UGGUUCUAUUUUGUU----- a.16.e.P.balamuthi.fasta UGUGCAAUCAAAACU-UAUAGUAGCCUCAAUGGUUCCGUUUGGUUUUCCU d.16.e.A.flavus.fasta CGUGC--------------------------GGUUCUAUUUUGUU----- d.16.e.T.caries.fasta CGUGC--------------------------GGUUCUAUUUUGUU----- d.16.e.M.circinelloides.fasta UUUA---------------------------GUCCCUAUUUCGUU----- d.16.e.M.racemosus.fasta UUUA---------------------------GUCCCUAUUUCGUU----- d.16.e.R.oryzae.fasta UUUA---------------------------GUCCUAUUUUCGUU----- a.16.e.M.edulis.fasta -------------------------------------------------- a.16.e.P.magellanicus.fasta -------------------------------------------------- b.16.e.E.granulosus.fasta GUGGAGCCUGUCGGCUCGUCCACAUGCCUUUGGAUGCCCUUGAUUGGGUG d.16.e.D.melanogaster.fasta -------------------------------------------------- b.16.e.C.koreana.fasta -------------------------------------------------- b.16.e.A.australis.fasta -------------------------------------------------- b.16.e.O.utahensis.fasta -------------------------------------------------- b.16.e.A.salina.fasta -------------------------------------------------- d.16.e.M.musculus.fasta -------------------------------------------------- d.16.e.R.norvegicus.fasta -------------------------------------------------- d.16.e.H.sapiens.fasta -------------------------------------------------- d.16.e.O.cuniculus.fasta -------------------------------------------------- d.16.e.X.borealis.fasta -------------------------------------------------- d.16.e.X.laevis.fasta -------------------------------------------------- d.16.e.A.castellanii.fasta ------------------AUUUUCUGCCACCGAAUAC-AUUAGCAUGG-- d.16.e.B.mandrillaris.fasta ------------------AA---CUGUCAUUGAAUAU-AUUAGCAUGG-- d.16.e.P.falciparum.A.fasta ----------------GCAUUUACUGUGUUUGAAUAC-UAUAGCAUGG-- d.16.e.P.falciparum.S.fasta ----------------GAGUUCAUUGUGUUUGAAUAC-UACAGCAUGG-- d.16.e.P.vivax.A.fasta ----------------GCAUUGCGCGU-UU-GAAUAC-UACAGCAUGG-- d.16.e.P.vivax.O.fasta ----------------GCAUUGCGCGU-UUCGAAUAC-UACAGCAGGG-- d.16.e.P.vivax.S.fasta ----------------GCAUUGCGCGU-UUUGAAUAC-UACAGCAUGG-- d.16.e.E.histolytica.fasta -------------------UUAA-------UGAAUAU-UCAAGCAUGG-- d.16.e.I.hoferi.fasta ------------------------------UGAAUAU-UGCAGCAUGG-- d.16.e.Dermocystidium.sp.fasta ------------------------------UGAAUAU-UUCAGCAUGG-- d.16.e.S.destruens.fasta ------------------------------UGAAUAU-UUCAGCAUGG-- d.16.e.A.unguiculata.fasta -----------------------------UUGAAUAC-AUUAGCAUGG-- d.16.e.D.grandis.fasta -----------------------------UUGAAUAU-AUUAGCAUGG-- d.16.e.A.macrogynus.fasta -------------------------UUGCCUGAAUAU-CUUAGCAUGG-- d.16.e.B.emersonii.fasta -------------------------AAGCUUGAAUAU-CUUAGCAUGG-- d.16.e.C.albicans.fasta -------------------------------------------------- d.16.e.S.cerevisiae.fasta -------------------------------------------------- d.16.e.N.crassa.fasta -------------------------------------------------- d.16.e.P.anserina.fasta -------------------------------------------------- d.16.e.C.immitis.fasta -------------------------------------------------- d.16.e.L.major.fasta -------------------UCCCAU-----CGCA-AC-UUCGGUUCGG-- d.16.e.T.cruzi.fasta ----------------UUAUUCCACACACACGCACAC-UCCUUUUUUGGA d.16.e.T.brucei.fasta ----------------------UGU-----UUCGUGU-CUCAUUUU---- d.16.e.P.carinii.fasta -------------------------------------------------- d.16.e.C.neoformans.fasta ----------------------------CCCGAAUAC-AUUAGCAUGG-- d.16.e.Fungus.sp.QPX.fasta ----------------------------CCCGAAUAC-AUUAGCAUGG-- d.16.e.U.maydis.fasta ----------------------------CCCGAAUAU-AUUAGCAUGG-- d.16.e.M.leidyi.fasta ----------------------------CUYGAAUAU-CUCAGCAUGG-- d.16.e.T.cystophora.fasta ----------------------------CUUGAAUAC-AUGAGCAUGG-- d.16.e.M.prolifera.fasta ----------------------------CCUGAAUAC-AUUAGCAUGG-- d.16.e.P.haeckeli.fasta -----------------------------AUGAAUAU-UGCAGCAUGG-- d.16.e.E.rotunda.fasta -----------------------------GUGAAUAC-AUUAGCAUGG-- d.16.e.P.chromatophora.fasta -----------------------------UUGAAUAC-AUUAGCAUGG-- d.16.e.A.majus.fasta ----------------------------UCUGUAUAC-AUUAGCAUGG-- d.16.e.S.indicum.fasta ----------------------------UCUGUAUAC-AUUAGCAUGG-- d.16.e.D.grandiflora.fasta ----------------------------UCUGUAUAC-AUUAGCAUGG-- d.16.e.Pla.lanceolata.fasta ----------------------------UCUGGAUAC-AUUAGCAUGG-- d.16.e.N.tabacum.fasta ----------------------------UCUGUAUAC-AUUAGCAUGG-- d.16.e.A.thaliana.fasta ----------------------------UCUGGAUAC-AUUAGCAUGG-- d.16.e.S.alba.fasta ----------------------------UCUGUAUAC-AUUAGCAUGG-- d.16.e.S.tuberosum.fasta ----------------------------UCUGUAUAC-AUUAGCAUGG-- d.16.e.F.x.ananassa.fasta ----------------------------UCUGGAUAC-AUUAGCAUGG-- d.16.e.G.max.fasta ----------------------------UCUGUAUAC-AUUAGCAUGG-- d.16.e.O.sativa.fasta ----------------------------UCUGGAUAC-AUUAGCAUGG-- d.16.e.Z.mays.fasta ----------------------------UCUGGAUAC-AUUAGCAUGG-- d.16.e.A.verticilliflorum.fast ----------------------------UCUGGAUAC-AUUAGCAUGG-- d.16.e.G.spirotaenia.fasta ----------------------------UCUGAAUAA-AUUAGCAUGG-- d.16.e.Staurastrum.sp.M752.fas ----------------------------UCUGAAUAC-AUUAGCAUGG-- d.16.e.C.paradoxa.fasta ----------------------------UCUGAACAUUAUUAGCAUGG-- d.16.e.G.nostochinearum.fasta ----------------------------UCUGAACAUUAUUAGCAUGG-- d.16.e.G.wittrockiana.fasta ----------------------------UCUGAACAUUAUUAGCAUGG-- d.16.e.C.luteoviridis.fasta ----------------------------UCUGAAUAC-GUUAGCAUGG-- d.16.e.O.longa.fasta -------------------------------GAAUAC-AUUAGCAUGG-- d.16.e.P.weissei.fasta -------------------------------GAAUAC-AUUAGCAUGG-- d.16.e.C.citrina.fasta -------------------------------GAAUAC-AUUAGCAUGG-- d.16.e.G.steinii.fasta -------------------------------GAAUAC-AUUAGCAUGG-- d.16.e.Ple.lanceolata.fasta -------------------------------GAAUAC-AUUAGCAUGG-- d.16.e.O.quadricornutus.fasta -------------------------------GAAUAC-AUUAGCAUGG-- d.16.e.S.lemnae.fasta -------------------------------GAAUAC-AUUAGCAUGG-- d.16.e.S.mytilus.fasta -------------------------------GAAUAC-AUUAGCAUGG-- d.16.e.E.mobilis.fasta -------------------------------GAAUAC-AUUAGCAUGG-- d.16.e.O.granulifera.1.fasta -------------------------------GAAUAC-AUUAGCAUGG-- d.16.e.O.granulifera.2.fasta -------------------------------GAAUAC-AUUAGCAUGG-- d.16.e.U.gallina.fasta -------------------------------GAAUAC-AUUAGCAUGG-- d.16.e.U.pisces.fasta -------------------------------GAAUAC-AUUAGCAUGG-- d.16.e.P.lepisma.fasta -------------------------------GAAUAC-AUUAGCAUGG-- d.16.e.U.grandis.fasta -------------------------------GAAUAC-AUUAGCAUGG-- d.16.e.B.coli.fasta -------------------------------GAAUAC-AUUAGCAUGG-- d.16.e.E.aediculatus.fasta -------------------------------GAAUAC-AUUAGCAUGG-- d.16.e.T.thermophila.fasta -------------------------------GAAUAC-AUUAGCAUGG-- d.16.e.Bangia.sp.NWT.fasta ------------------------------UGAAUAU-GUGAGCAUGG-- d.16.e.Bangia.sp.VIS7.fasta ------------------------------UGAAUAC-GUGAGCAUGG-- d.16.e.E.carnea.fasta ------------------------------UGAAUAC-AUUAGCAUGG-- d.16.e.R.parvula.fasta ------------------------------UGAAUAC-AUUAGCAUGG-- d.16.e.C.coeruleus.fasta ------------------------------UGAAUAC-AUUAGCAUGG-- d.16.e.P.aerugineum.1.fasta ------------------------------UGAAUAC-AUUAGCAUGG-- d.16.e.R.maculata.fasta ------------------------------UGAAUAC-AUUAGCAUGG-- d.16.e.A.ambigua.fasta -------------------------------GAAUAC-AUUAGCAUGG-- d.16.e.A.baicalensis.fasta -------------------------------GAAUAC-AUUAGCAUGG-- d.16.e.S.nipponica.fasta -------------------------------GAAUAC-AUUAGCAUGG-- d.16.e.C.radiatus.fasta -------------------------------GAAUAU-AUUAGCAUGG-- d.16.e.C.criophilum.fasta -------------------------------GAAUAU-AUUAGCAUGG-- d.16.e.A.capitellata.fasta -------------------------------GAAUAU-AUUAGCAUGG-- d.16.e.S.pupula.fasta -------------------------------GAAUAU-AUUAGCAUGG-- d.16.e.T.antarctica.fasta -------------------------------GAAUAU-AUUAGCAUGG-- d.16.e.E.triangulatum.fasta -------------------------------GAAUGU-AAUAGCAUGG-- d.16.e.A.bongranii.fasta -------------------------------GAAUAG-AUUAGCAUGG-- d.16.e.Pseudogomphonema.sp.fas -------------------------------GAAUAU-AUUAGCAUGG-- d.16.e.D.tenue.fasta -------------------------------GAAUAU-AUUAGCAUGG-- d.16.e.G.marina.fasta -------------------------------GAAUAU-AUUAGCAUGG-- d.16.e.Thalassionema.sp.fasta -------------------------------GAAUAU-AUUAGCAUGG-- d.16.e.R.belgicae.fasta -------------------------------GAAUAU-AUUAGCAUGG-- d.16.e.Undatella.sp.fasta -------------------------------GAAUAU-GUUAGCAUGG-- d.16.e.C.belgica.fasta -------------------------------GAAUAU-AUUAGCAUGG-- d.16.e.O.sinensis.fasta -------------------------------GAAUAU-AUUAGCAUGG-- d.16.e.D.brightwellii.fasta -------------------------------GAAUAU-AUUAGCAUGG-- d.16.e.L.undulatum.fasta -------------------------------GAAUAU-AUUAGCAUGG-- d.16.e.T.eccentrica.fasta -------------------------------GAAUAU-AUUAGCAUGG-- d.16.e.T.pseudonana.fasta -------------------------------GAAUAU-AUUAGCAUGG-- d.16.e.S.costatum.fasta -------------------------------GAAUAU-AUUAGCAUGG-- d.16.e.P.laevis.fasta -------------------------------GAAUAU-AUUAGCAUGG-- d.16.e.L.borealis.fasta -------------------------------GAAUAC-AUUAGCAUGG-- d.16.e.P.pseudodenticulata.fas -------------------------------GAAUAG-AUUAGCAUGG-- d.16.e.B.mediterranea.fasta -------------------------------GAAUAC-AUUAGCAUGG-- d.16.e.B.pacifica.fasta -------------------------------GAAUAC-AUUAGCAUGG-- d.16.e.L.minuta.fasta -------------------------------GAAUAC-AUUAGCAUGG-- d.16.e.L.danicus.fasta -------------------------------GAAUAC-GUUAGCAUGG-- d.16.e.Chaetoceros.sp.fasta -------------------------------GAAUAU-AUUAGCAUGG-- d.16.e.A.invadans.fasta -------------------------------GAAUAC-AUUAGCAUGG-- d.16.e.L.giganteum.fasta -------------------------------GAAUAC-AUUAGCAUGG-- d.16.e.M.varians.fasta -------------------------------GAAUAC-AUUAGCAUGG-- d.16.e.B.hominis.fasta -------------------------------GAAUAG-AUUAGCAUGG-- d.16.e.P.marinus.fasta --------------------------GCCAUGAAUAC-AUUAGCAUGG-- d.16.e.T.gondii.fasta -------------------------CGCCUUGAAUAC-UGCAGCAUGG-- d.16.e.A.fundyense.fasta -------------------------GGCCUUGAAUAC-AUUAGCAUGG-- d.16.e.B.bigemina.fasta -------------------------UGUCUUGAAUAC-UUCAGCAUGG-- d.16.e.B.canis.fasta -------------------------UGUCUUGAAUAC-UGUAGCAUGG-- d.16.e.Babesia.sp.OKD.fasta -------------------------UGUCUUGAAUAC-UUCAGCAUGG-- d.16.e.B.microti.1.fasta -------------------------UGCCUUGAAUAC-UACAGCAUGG-- d.16.e.B.microti.2.fasta -------------------------UGCCUUGAAUAC-UACAGCAUGG-- d.16.e.B.microti.3.fasta -------------------------UGCCUUGAAUAC-UACAGCAUGG-- d.16.e.B.microti.4.fasta -------------------------CGCCUUGAAUAC-UACAGCAUGG-- d.16.e.B.microti.5.fasta -------------------------CGCCUUGAAUAC-UACAGCAUGG-- d.16.e.B.rodhaini.fasta -------------------------UGCCUUGAAUAC-UACAGCAUGG-- d.16.e.B.gibsoni.fasta -------------------------UGCCUUGAAUAC-UUCAGCAUGG-- d.16.e.B.bovis.fasta -------------------------CGCC-UGUAUAA-UUGAGCAUGG-- d.16.e.J.libera.fasta -------------------------CGCCUUGCAUGG-UUGAGCAUGG-- d.16.e.R.americana.fasta -------------------------YNNUCUGCAUGG-UUGAGCAUGG-- d.16.e.B.ostreae.fasta -------------------------------GAAUGC-AUUAGCAUGG-- d.16.e.A.dasyae.fasta ------------------------------UGAAUAC-AUUAGCAUGG-- d.16.e.A.hermannii.fasta ------------------------------UGAAUAC-AUUAGCAUGG-- d.16.e.N.helminthoides.fasta ------------------------------UGAAUAC-AUUAGCAUGG-- d.16.e.B.gelatinosum.fasta ------------------------------UGAAUAC-AUUAGCAUGG-- d.16.e.N.tortuosa.fasta ------------------------------UGAAUAC-AUUAGCAUGG-- d.16.e.T.hispida.fasta ------------------------------UGAAUAC-GUUAGCAUGG-- d.16.e.T.violacea.4.fasta ------------------------------UGAAUAC-GUUAGCAUGG-- d.16.e.T.violacea.1.fasta ------------------------------UGAAUAC-GUUAGCAUGG-- d.16.e.T.violacea.2.fasta ------------------------------UGAAUAC-GUUAGCAUGG-- d.16.e.N.shawii.fasta ------------------------------UGAAUAC-AUUAGCAUGG-- d.16.e.B.investiens.fasta ------------------------------UGAAUAC-AUUAGCAUGG-- d.16.e.B.macrosporum.fasta ------------------------------UGAAUAC-GUUAGCAUGG-- d.16.e.A.plicata.fasta ------------------------------UGAAUAC-AUUAGCAUGG-- d.16.e.C.officinalis.fasta ------------------------------UGAAUAC-AUUAGCAUGG-- d.16.e.R.carriebowensis.fasta ------------------------------UGAAUAC-AUUAGCAUGG-- d.16.e.B.hamifera.fasta ------------------------------UGAGUAA-AUUAGCAUGG-- d.16.e.G.vagum.fasta ------------------------------UGUACAC-AUUAGCAUGG-- d.16.e.C.crispus.fasta ------------------------------UGAAUAC-AUUAGCAUGG-- d.16.e.H.plana.fasta ------------------------------UGAAUAC-AUUAGCAUGG-- d.16.e.R.leptophylla.fasta ------------------------------UGAAUAC-AUUAGCAUGG-- d.16.e.P.pulvinata.fasta ------------------------------UGAAUAC-AUUAGCAUGG-- d.16.e.C.rubrum.fasta ------------------------------UGAAUAC-AUUAGCAUGG-- d.16.e.Gracilariopsis.sp.fasta ------------------------------UGAAUAC-AUUAGCAUGG-- d.16.e.B.moritziana.fasta ------------------------------UGAAUAC-AUUAGCAUGG-- d.16.e.H.rubra.fasta ------------------------------UGAAUAC-CAUAGCAUGG-- d.16.e.D.grisea.fasta ------------------------------UGAAUAC-AUUAGCAUGG-- d.16.e.N.fowleri.fasta ----------------------------CCAGAGCGA-UUUAGCAUGGGA d.16.e.N.gruberi.fasta ----------------------------CCAGAGCGA-UUUAGCAUGGGA a.16.e.Hexamita.sp.fasta --------------------------------GCUGC--ACAGUACAGCA d.16.e.T.foetus.fasta -------------------------------GGACGC--UUAGUGUAUGG d.16.e.A.khaliulini.fasta -------------------------------ACAUGCAUUU-UCAUAG-- d.16.e.E.aedis.fasta -------------------------------AUAUGCACUU-UCAUGG-- d.16.e.A.connecticus.fasta -------------------------------AUCUUUUGUA-UCUAAC-- d.16.e.I.barri.fasta -------------------------------AGCCGUACUU-UCAUAG-- d.16.e.A.ferocious.fasta -------------------------------AUACGUGUGC-UUUAAG-- d.16.e.Amblyospora.sp.fasta -------------------------------AUCCGUGCUU-UUCUAG-- d.16.e.C.lunata.fasta -------------------------------AGAUGCUUUUAUCUAAA-- d.16.e.P.anophelis.fasta -------------------------------UGGGGCGAGA-UCAAUG-- d.16.e.Hazardia.sp.fasta -------------------------------AUGCGCAGUC-UCUUGC-- d.16.e.H.milleri.fasta -------------------------------AGGCGCGGUC-UCAGGC-- d.16.e.P.simulii.fasta -------------------------------A-CUGUGUCACAUCAAA-- d.16.e.W.palustris.fasta -------------------------------A-AUGUGACGUAUCAAA-- d.16.e.Nosema.sp.03.fasta -------------------------------------------------- d.16.e.Nosema.sp.05.fasta -------------------------------------------------- d.16.e.Endoreticulatus.sp.fast -------------------------------------------------- d.16.e.Nosema.sp.02.fasta -------------------------------------------------- d.16.e.N.spodopterae.fasta -------------------------------------------------- d.16.e.N.trichoplusiae.fasta -------------------------------------------------- d.16.e.N.bombycis.27.fasta -------------------------------------------------- d.16.e.N.bombycis.02.fasta -------------------------------------------------- d.16.e.V.imperfecta.fasta -------------------------------------------------- d.16.e.N.furnacalis.fasta -------------------------------------------------- d.16.e.Microsporidium57864.fas -------------------------------------------------- d.16.e.Vairimorpha.sp.C21.fast -------------------------------------------------- d.16.e.N.oulemae.fasta -------------------------------------------------- d.16.e.N.necatrix.fasta -------------------------------------------------- d.16.e.V.necatrix.fasta -------------------------------------------------- d.16.e.N.apis.fasta -------------------------------------------------- d.16.e.O.occidentalis.fasta -------------------------------------------------- d.16.e.Microsporidium.sp.DP119 -------------------------------UAAAUUA------------ d.16.e.V.corneae.fasta -------------------------------UCUCACA------------ d.16.e.A.michaelis.fasta -------------------------------GUCAACA------------ d.16.e.T.contejeani.fasta -------------------------------AUAAGUA------------ d.16.e.E.hellem.fasta ----------------------------------UAUA------------ d.16.e.Encephalitozoon.sp.fast ----------------------------------UAUG------------ d.16.e.E.cuniculi.fasta ----------------------------------UGUG------------ d.16.e.O.colligata.fasta -------------------------------AACUAGA------------ d.16.e.E.salmonis.fasta -------------------------------UGAGUUU------------ d.16.e.N.salmonis.fasta -------------------------------UGAGUUU------------ d.16.e.Enterocytozoonidae.sp.f -------------------------------UAAGUUU------------ d.16.e.E.bieneusi.fasta -------------------------------UGAGUUU------------ d.16.e.B.algerae.fasta -------------------------------AAAUUGA------------ d.16.e.T.solenopsae.fasta -------------------------------CAAAAGA------------ d.16.e.V.acridophagus.fasta -------------------------------AGGUAAA------------ d.16.e.Bacillidium.sp.fasta -------------------------------CAAA----AUUA------- d.16.e.P.cristatellae.fasta -------------------------------CAAAGCGGAUUACGUGA-- d.16.e.Pleistophora.sp.fasta -------------------------------------------------- d.16.e.O.operophterae.fasta -------------------------------------------------- d.16.e.F.magnivora.fasta -------------------------------AUGGAGU------------ d.16.e.G.atherinae.fasta ------------------------------------------UCAAGG-- d.16.e.Ichthyosporidium.sp.fas ------------------------------------------UCAAGG-- d.16.e.L.acerinae.fasta ------------------------------------------UCAAGG-- d.16.e.H.anguillarum.fasta ------------------------------------------UCAAGG-- d.16.e.P.mirandellae.fasta ------------------------------------------UUCAAG-- d.16.e.T.hominis.fasta ------------------------------------------UCGAGG-- d.16.e.V.culicis.fasta ------------------------------------------UCGAGG-- d.16.e.P.hippoglossoideos.fast ---------------------------------------CAUUCAAGG-- d.16.e.Microgemma.sp.fasta ------------------------------------------UCAAGG-- d.16.e.S.lophii.fasta ------------------------------------------UCGAGA-- d.16.e.Pleistophora.sp.LS.fast ------------------------------------------UUGAGG-- d.16.e.D.gammarellum.fasta ------------------------------------------UCAAAA-- d.16.e.M.prosopium.fasta ------------------------------------------UCAAAC-- d.16.e.A.scoticae.fasta -------------------------------------------CAAGG-- d.16.e.P.whitei.fasta -------------------------------------------CAAGG-- a.16.c.C.coccineum.fasta AAU-----------------------------ACAGAGGAUGCAAGCGUU a.16.c.C.ruber.fasta AAU-----------------------------ACAGAGGAUGCAAGCGUU d.16.c.N.tabacum.fasta AAU-----------------------------ACAGAGGAUGCAAGCGUU d.16.c.S.oleracea.fasta AAG-----------------------------ACAGAGGAUGCAAGCGUU d.16.c.Z.mays.fasta AAG-----------------------------ACAGAGGAUGCAAGCGUU d.16.c.M.polymorpha.fasta AAG-----------------------------ACAGAGGAUGCAAGCGUU d.16.c.R.communis.fasta AAU-----------------------------ACAGAGGAUGCAAGCGUU d.16.c.C.vulgaris.fasta AAG-----------------------------ACAGAGGAUGCAAGCGUU d.16.c.P.wickerhamii.fasta AAG-----------------------------ACAGAGGAUGCAAGCGUU d.16.c.P.minor.fasta AAG-----------------------------ACAGAGGAUGCAAGCGUU d.16.c.N.olivacea.fasta AAG-----------------------------ACGGAGGAUGCAAGCGUU d.16.c.P.parkeae.fasta AAU-----------------------------ACGGAGGAUGCAAGCGUU d.16.c.C.reinhardtii.fasta AAU-----------------------------ACAGAGGGUGCAAGCGUU b.16.m.A.castellanii.fasta AAU-----------------------------ACGGAGAGGGCGAGUGUU d.16.c.P.thurberi.fasta AAU-----------------------------ACAGGGAAUGCAAGCGUU b.16.m.C.crispus.fasta AAA-----------------------------ACGGGAAGGGCAAGCGUU d.16.c.T.gondii.fasta CAU-----------------------------ACGGGGGAUACAAGCGUU b.16.m.N.crassa.fasta C-G-----------------------------UCGAUUUA-UCGAGUAAA b.16.m.P.anserina.fasta --------------------------------UCGAUUUA-UCGAAUAAA b.16.m.P.chrysogenum.fasta U-C-----------------------------GCGAUUAACUCGCAUAAA b.16.m.E.nidulans.fasta ---------------------------------CGAUUAUAUCGUAUAAA b.16.m.S.cerevisiae.fasta A-U-----------------------------AUAUUUUAUAUGGAUAUA b.16.m.W.saturnus.m.fasta --C-----------------------------AGAUUAUG-AUGAAUAUA b.16.m.P.minor.fasta --------------------------------GAAACAUA-AUGAGCA-- d.16.c.P.falciparum.fasta --A-----------------------------AUACAGAAAAUGCAAGCG d.16.c.B.bovis.fasta A-U-----------------------------ACAGAGGAUAUAAGCGUU b.16.m.T.pyriformis.fasta --A-----------------------------UGAGUAUAUUCUAGGAGA d.16.m.S.sinuspaulianus.fasta --------------------------------UGAUAUUAUCUUACUACU b.16.m.P.tetraurelia.fasta ---------------------------------CAAUACAUGUGCCAGCA b.16.m.D.discoideum.fasta --------------------------------UAAUUUCGUGCCAGCCGC d.16.m.P.polycephalum.fasta A-U-----------------------------GCUGCUUUGCUUAAAAAU b.16.m.P.littoralis.fasta --C-----------------------------UAACUUCGUGCCAGCAGU b.16.m.P.wickerhamii.fasta AAU-----------------------------ACGAGAGGGGCGAGCGUU d.16.c.H.africana.fasta GAU-----------------------------ACAGAGGAUGCGAGCAUU d.16.c.C.fragile.fasta AAU-----------------------------ACGGAGGAUGCAAGCGUU d.16.c.C.sertularioides.fasta AAU-----------------------------ACGGGGGAUGCAAGCGUU d.16.c.C.humicola.fasta AAU-----------------------------ACAGAGGGAGCAAGCGUU d.16.c.P.uvella.fasta AAU-----------------------------ACAGGGGAUUCAAGCGAU a.16.c.G.nostochinearum.fasta AAU-----------------------------ACGGAGGAUGCAAGCGUU a.16.c.G.wittrockiana.fasta AAU-----------------------------ACGGGGGAUGCAAGCGUU d.16.c.C.paradoxa.fasta AAU-----------------------------ACGGAGGAUGCAAGCGUU d.16.y.C.paradoxa.fasta AAU-----------------------------ACGGAGGAUGCAAGCGUU d.16.c.Cryptomonas.sp.fasta AAU-----------------------------ACAGAGGAUGCAAGCGUU d.16.c.P.palmata.fasta AAU-----------------------------ACGGAGGAUGCAAGCGUU d.16.c.H.akashiwo.fasta AAU-----------------------------ACGGAGGAUGCAAGUGUU d.16.c.S.pseudocostatum.fasta AAG-----------------------------ACGGAGGAUGCAAGUGUU d.16.c.P.littoralis.fasta AAGG----------------------------ACGGGGGAUGCAAGUGUU d.16.c.C.caldarium.fasta AAU-----------------------------ACGGAGGAUGCAAGCGUU a.16.c.E.huxleyi.fasta AAU-----------------------------ACGGGGGAUGCAAGCGUU d.16.c.E.gracilis.fasta AAU-----------------------------ACGGGAGAUGCGAGCGUU d.16.b.Anabaena.sp.fasta AAU-----------------------------ACGGAGGAUGCAAGCGUU d.16.b.Chlorogloeopsis.PCC7518 AAU-----------------------------ACGGAGGAUGCAAGCGUU d.16.b.Synechococcus.sp.fasta AAU-----------------------------ACGGGAGAGGCAAGCGUU d.16.b.Synechocystis.PCC6803.G AAU-----------------------------ACGGAGGAUGCAAGCGUU d.16.b.O.agardhii.fasta AAU-----------------------------ACGGGGGAUGCAAGCGUU d.16.b.Pleurocapsa.7516.fasta AAU-----------------------------ACGGAGGAUGCAAGCGUU d.16.b.M.aeruginosa.fasta AAU-----------------------------ACGGGGGAGGCAAGCGUU b.16.m.C.reinhardtii.fasta AAAA----------------------------C-GUGCGGUGUCAGUAUA d.16.m.C.eugametos.fasta AAGA----------------------------C-AGAUAGGACAAGUGUA b.16.m.M.senile.fasta UAGA----------------------------C-UUA-AGGGCUGGUCUU d.16.b.S.pneumoniae.fasta AAUA----------------------------C-GUAGGUCCCNAGCGUU d.16.b.S.pyogenes.fasta AAUA----------------------------C-GUAGGUCCCNAGCGUU d.16.b.B.anthracis.fasta NAUA----------------------------C-GUAGGUGGCAAGCGUU d.16.b.B.cereus.1.fasta AAUA----------------------------C-GUAGGUGGCAAGCGUU d.16.b.E.faecalis.fasta AAUA----------------------------C-GUAGGUGGCAAGCGUU d.16.b.E.faecium2.fasta AAUA----------------------------C-GUAGGUGGCAAGCGUU d.16.b.L.monocytogenes.fasta AAUA----------------------------C-GUAGGUGGCNAGCGUU d.16.b.B.subtilis.fasta AAUA----------------------------C-GUAGGUGGCAAGCGUU d.16.b.B.subtilis.GEN.fasta AAUA----------------------------C-GUAGGUGGCAAGCGUU d.16.b.B.halodurans.fasta AAUA----------------------------C-GUAGGUGGCAAGCGUU d.16.b.S.aureus.fasta AAUA----------------------------C-GUAGGUGGCAAGCGUU d.16.b.S.aureus.GEN.fasta AAUA----------------------------C-GUAGGUGGCAAGCGUU d.16.b.L.lactis.GEN.fasta AAUA----------------------------C-GUAGGUCCCGAGCGUU d.16.b.S.pyogenes.GEN.fasta AAUA----------------------------C-GUAGGUCCCGAGCGUU d.16.b.L.acidophilus.fasta AAUA----------------------------C-GUAGGUGGCNAGCGUU d.16.b.M.capricolum.fasta AAUA----------------------------C-AUAGGUGGCAAGCGUU d.16.b.M.mycoides.fasta AAUA----------------------------C-AUAGGUGGCAAGCGUU d.16.b.E.rhusiopathiae.fasta AAUA----------------------------C-GUAGGUGGCAAGCGUU d.16.b.C.innocuum.fasta AAUA----------------------------C-GUAGGUGGCAAGCGUU d.16.b.M.genitalium.fasta AAUA----------------------------C-AUAGGUCGCAAGCGUU d.16.b.M.pneumoniae.GEN.fasta AAUA----------------------------C-AUAGGUCGCAAGCGUU d.16.b.M.pneumoniae.fasta AAUA----------------------------C-AUAGGUCGCAAGCGUU d.16.b.M.gallisepticum.fasta AAUA----------------------------C-AUAGGUUGCAAGCGUU d.16.b.U.urealyticum.fasta AAUA----------------------------C-AUAGGAUGCAAGCGUU d.16.b.U.urealyticum.GEN.fasta AAUA----------------------------C-AUAGGAUGCAAGCGUU d.16.b.M.hyopneumoniae.fasta AAUA----------------------------C-AUAGGUCGCAAGCGUU d.16.b.F.necrophorum.fasta AAUA----------------------------C-GUAUGUCGCAAGCGUU d.16.b.F.nucleatum.fasta AAUA----------------------------C-GUAUGUCACGAGCGUU d.16.b.S.moniliformis.fasta AAUA----------------------------C-GUAUGUCGCAAGCGUU d.16.b.C.botulinum.F.fasta AAUA----------------------------C-GUAGGUGGCGAGCGUU d.16.b.C.tetani.fasta AAUA----------------------------C-GUAGGUGGCAAGCGUU d.16.b.C.perfringens.fasta AAUA----------------------------C-GUAGGUGGCGAGCGUU d.16.b.C.difficile.fasta AAUA----------------------------C-GUAGGGGGCUAGCGUU d.16.b.E.brachy.fasta AAUA----------------------------CUGGAGGGGGCAAGCGUU d.16.b.Epulopiscium.sp.fasta AAUA----------------------------C-GUAAGGGGCGAGCGUU d.16.b.H.chlorum.fasta AAUA----------------------------C-GUAGGGGGCAAGCGUU b.16.m.G.max.fasta AAG-----------------------------ACGGGGGGGGCAAGUGUU b.16.m.O.berteriana.fasta AAG-----------------------------ACGGGGGGGGCAAGUGUU b.16.m.S.cereale.fasta AAG-----------------------------ACGGGGGGGGCAAGUGUU b.16.m.T.aestivum.fasta AAG-----------------------------ACGGGGGGGGCAAGUGUU d.16.m.Z.mays.fasta AAG-----------------------------ACGGGGGGGGCAAGUGUU b.16.m.M.polymorpha.fasta AAG-----------------------------ACGGGGGGGGCAAGUGUU b.16.m.N.olivacea.fasta AAU-----------------------------ACGGGGGGGGCUAGUGUG d.16.b.G.liquefaciens.fasta AAU-----------------------------ACGAAGGGGGCUAGCGUU d.16.b.B.japonicum.fasta AAU-----------------------------ACGAAGGGGGCUAGCGUU d.16.b.R.acidophilus.fasta AAU-----------------------------ACGAAGGGGGCNAGCGUU d.16.b.A.caulinodans.fasta AAU-----------------------------ACGAAGGGGGCAAGCGUU d.16.b.B.quintana.fasta AAU-----------------------------ACGAAGGGGGCUAGCGUU d.16.b.M.loti.fasta AAU-----------------------------ACGAAGGGGGCUAGCGUU d.16.b.A.tumefaciens.fasta AAU-----------------------------ACGAAGGGGGCUAGCGUU d.16.b.B.bacilliformis.fasta AAU-----------------------------ACGAAGGGGGCUAGCGUU d.16.b.B.henselae.fasta AAU-----------------------------ACGAAGGGGGCUAGCGUU d.16.b.B.melitensis.fasta AAU-----------------------------ACGAAGGGGGCUAGCGUU d.16.b.R.orientis.fasta AAU-----------------------------ACGAAGGGGGCUAGCGUU d.16.b.Methylobacterium.sp.fas AAU-----------------------------ACGAAGGGGGCUAGCGUU d.16.b.R.bellii.fasta AAG-----------------------------ACGGAGGGGGCUAGCGUU d.16.b.R.felis.URRWXCal2.fasta AAG-----------------------------ACGGAGGGGGCUAGCGUU d.16.b.R.prowazekii.fasta AAG-----------------------------ACGGAGGGGGCUAGCGUU d.16.b.R.prowazekii.GEN.fasta AAG-----------------------------ACGGAGGGGGCUAGCGUU d.16.b.R.rickettsii.fasta AAG-----------------------------ACGGAGGGGGCUAGCGUU d.16.b.A.calcoaceticus.fasta AAU-----------------------------ACAGAGNGUGCGAGCGUU d.16.b.P.pacificensis.fasta AAU-----------------------------ACAGAGGGUGCAAGCGUU d.16.b.C.marismortui.fasta AAU-----------------------------ACGGAGGGUGCAAGCGUU d.16.b.H.halodenitrificans.fas AAU-----------------------------ACGGAGGGUGCAAGCGUU d.16.b.P.aeruginosa.fasta AAU-----------------------------ACGAAGGGUGCGAGCGUU d.16.b.P.aeruginosa.GEN.fasta AAU-----------------------------ACGAAGGGUGCAAGCGUU d.16.b.Pseudomonas.sp.fasta AAU-----------------------------ACGAAGGGUGCAAGCGUU d.16.b.P.putida.fasta AAU-----------------------------ACAGAGGGUGCAAGCGUU d.16.b.C.burnetii.fasta AAU-----------------------------ACAGAGAGUGCAAGCGUU d.16.b.M.capsulatus.fasta AAU-----------------------------ACGGAGGGUGCGAGCGUU d.16.b.L.pneumophila.1.fasta AAU-----------------------------ACGGAGNGUGCNAGCGUU d.16.b.L.pneumophila.2.fasta AAU-----------------------------ACGGAGGGUGCGAGCGUU d.16.b.A.vinosum.fasta AAU-----------------------------ACGGAGNGUGCAAGCGUU d.16.b.Beggiatoa.sp.fasta AAU-----------------------------ACAGAGGGUGCAAGCGUU d.16.b.A.hydrophila.fasta AAU-----------------------------ACGGAGGGUGCAAGCGUU d.16.b.S.putrefaciens.fasta AAU-----------------------------ACGGAGGGUCCGAGCGUU d.16.b.C.freundii.fasta AAU-----------------------------ACGGAGNGUGCAAGCGUU d.16.b.S.dysenteriae.1.fasta AAU-----------------------------ACGGAGGGUGCAAGCGUU d.16.b.K.pneumoniae.fasta AAU-----------------------------ACGGAGGGUGCAAGCGUU d.16.b.P.shigelloides.fasta AAU-----------------------------ACGGAGGGUGCAAGCGUU d.16.b.Y.pestis.fasta AAU-----------------------------ACGGAGGGUGCAAGCGUU d.16.b.Y.pseudotuberculosis.fa AAU-----------------------------ACGGAGGGUGCAAGCGUU d.16.b.S.dysenteriae.2.fasta AAU-----------------------------ACGGAGGGUGCAAGCGUU d.16.b.E.coli.0157G.GEN.fasta AAU-----------------------------ACGGAGGGUGCAAGCGUU d.16.b.E.coli.EDL.GEN.fasta AAU-----------------------------ACGGAGGGUGCAAGCGUU d.16.b.E.coli.fasta AAU-----------------------------ACGGAGGGUGCAAGCGUU d.16.b.E.coli.K12.GEN.fasta AAU-----------------------------ACGGAGGGUGCAAGCGUU h.16.b.E.coli.hlxnum.fasta AAU-----------------------------ACGGAGGGUGCAAGCGUU m.16.b.E.coli.mhg.fasta AAU-----------------------------ACGGAGGGUGCAAGCGUU s.16.b.E.coli.schem.fasta AAU-----------------------------ACGGAGGGUGCAAGCGUU d.16.b.S.typhimurium.fasta AAU-----------------------------ACGGAGGGUGCAAGCGUU d.16.b.S.marcescens.fasta AAU-----------------------------ACGGAGNGUGCAAGCGUU d.16.b.E.tarda.fasta AAU-----------------------------ACGGAGGGUGCAAGCGUU d.16.b.P.vulgaris.fasta AAU-----------------------------ACGGAGGGUGCAAGCGUU d.16.b.V.cholerae4.fasta AAU-----------------------------ACGGAGGGUGCAAGCGUU d.16.b.V.cholerae5.fasta AAU-----------------------------ACGGAGGGUGCAAGCGUU d.16.b.V.cholerae2.fasta AAU-----------------------------ACGGAGGGUGCAAGCGUU d.16.b.V.cholerae6.fasta AAU-----------------------------ACGGAGGGUGCAAGCGUU d.16.b.V.cholerae.fasta AAU-----------------------------ACGGAGGGUGCAAGCGUU d.16.b.V.cholerae.GEN.fasta AAU-----------------------------ACGGAGGGUGCAAGCGUU d.16.b.V.parahaemolyticus.fast AAU-----------------------------ACGGAGGGUGCGAGCGUU d.16.b.H.influenzae7.fasta AAU-----------------------------ACGGAGGGUGCGAGCGUU d.16.b.H.influenzae8.fasta AAU-----------------------------ACGGAGGGUGCGAGCGUU d.16.b.H.influenzae6.fasta AAU-----------------------------ACGGAGGGUGCGAGCGUU d.16.b.H.influenz.fasta AAU-----------------------------ACGGAGNGUGCGAGCGUU d.16.b.H.influenzae.fasta AAU-----------------------------ACGGAGGGUGCGAGCGUU d.16.b.P.multocida.fasta AAU-----------------------------ACGGAGGGUGCGAGCGUU d.16.b.P.multocida.GEN.fasta AAU-----------------------------ACGGAGGGUGCGAGCGUU d.16.b.X.albilineans.fasta AAU-----------------------------ACGAAGGGUGCAAGCGUU d.16.b.X.campestris.fasta AAU-----------------------------ACGAAGGGUGCAAGCGUU d.16.b.X.fastidiosa.GEN.fasta AAU-----------------------------ACGAAGGGUGCAAGCGUU d.16.b.D.nodosus.fasta AAU-----------------------------ACGGAGGGUGCAAGCGUU d.16.b.F.tularensis.fasta AAU-----------------------------ACGGGGGGUGCAAGCGUU d.16.b.B.parapertussis.fasta AAU-----------------------------ACGUAGGGUGCAAGCGUU d.16.b.B.pertussis.fasta AAU-----------------------------ACGUAGGGUGCAAGCGUU d.16.b.B.bronchiseptica2.fasta AAU-----------------------------ACGUAGGGUGCAAGCGUU d.16.b.u.proteobacterium.fasta AAU-----------------------------ACGUAGGGUGCAAGCGUU d.16.b.B.mallei.fasta AAU-----------------------------ACGUAGGGUGCGAGCGUU d.16.b.Burkholderia.sp.fasta AAU-----------------------------ACGUAGGGUGCAAGCGUU d.16.b.N.meningitidis.MD58.GEN AAU-----------------------------ACGUAGGGUGCGAGCGUU d.16.b.N.meningitidis.Z2491.GE AAU-----------------------------ACGUAGGGUGCGAGCGUU d.16.b.N.gonorrhoeae.fasta AAU-----------------------------ACGUAGGGUGCGAGCGUU d.16.b.C.testosteroni.fasta AAU-----------------------------ACGUAGGGUGCAAGCGUU d.16.b.D.desulfuricans.fasta AAU-----------------------------ACGGAGGGUGCAAGCGUU d.16.b.M.xanthus.fasta AAU-----------------------------ACAGAGGGUGCAAGCGUU d.16.b.D.thermophilus.fasta AAU-----------------------------ACGGAGGGGGCGAGCGUU d.16.b.B.burgdorferi.fasta AAU-----------------------------ACGUAAGGGGCGAGCGUU d.16.b.B.burgdorferi.GEN.fasta AAU-----------------------------ACGUAAGGGGCGAGCGUU d.16.b.B.hermsii.fasta AAU-----------------------------ACGUAAGGGGCGAGCGUU d.16.b.S.aurantia.fasta AAC-----------------------------ACGUAAGGGGCNAGCGUU d.16.b.T.pallidum.A.fasta AAC-----------------------------ACGUAAGGGGCGAGCGUU d.16.b.L.illini.fasta AAU-----------------------------ACGUAUGGUGCAAGCGUU d.16.b.L.interrogans.fasta AAU-----------------------------ACGUAUGGUGCAAGCGUU d.16.b.C.trachomatis.GEN.fasta AAU-----------------------------ACGGAGGGUGCUAGCGUU d.16.b.C.trachomatis.L2.fasta AAU-----------------------------ACGGAGGGUGCUAGCGUU d.16.b.C.muridarum.fasta AAU-----------------------------ACGGAGGGUGCUAGCGUU d.16.b.C.pneumoniae.AR39.fasta AAU-----------------------------ACGGAGGGUGCUAGCGUU d.16.b.C.pneumoniae.fasta AAU-----------------------------ACGGAGGGUGCUAGCGUU d.16.b.C.pneumoniae.J138.fasta AAU-----------------------------ACGGAGGGUGCUAGCGUU d.16.b.C.pneumoniae.CWL029.fas AAU-----------------------------ACGGAGGGUGCUAGCGUU d.16.b.C.psittaci.fasta AAU-----------------------------ACGGAGGGUGCUAGCGUU d.16.b.D.radiodurans.1.fasta AAU-----------------------------ACGGAGGGUGCAAGCGUU d.16.b.D.radiodurans.GEN.fasta AAU-----------------------------ACGGAGGGUGCAAGCGUU d.16.b.B.fragilis.fasta AAU-----------------------------ACGGAGGAUCCGAGCGUU d.16.b.P.gingivalis.fasta NAU-----------------------------ACGGAGNAUGCNAGCGUU d.16.b.C.vibrioforme.fasta GAU-----------------------------ACAGGGGUGGCAAGCGUU d.16.b.C.jejuni.fasta AAU-----------------------------ACGGAGGGUGCAAGCGUU d.16.b.C.jejuni.GEN.fasta AAU-----------------------------ACGGAGGGUGCAAGCGUU d.16.b.C.sputorum.fasta AAU-----------------------------ACGGAGGGUGCAAGCGUU d.16.b.H.pylori.26695.GEN.fast AAU-----------------------------ACGGAGGGUGCAAGCGUU d.16.b.H.pylori.J99.GEN.fasta AAU-----------------------------ACGGAGGGUGCAAGCGUU d.16.b.H.pylori2.fasta AAU-----------------------------ACGGAGGGUGCAAGCGUU d.16.b.A.capsulatum.fasta AAU-----------------------------ACGAAGGGGGCGAACGUU d.16.b.H.foetida.fasta AAU-----------------------------ACAGAGGGGGCAAGCGUU d.16.b.A.globiformis.fasta AAU-----------------------------ACGUAGGGCGCAAGCGUU d.16.b.M.luteus.fasta AAU-----------------------------ACGUAGGGUGNNAGCGUU d.16.b.Frankia.sp.fasta AAU-----------------------------ACGUAGGGUGCAAGCGUU d.16.b.S.bottropensis.fasta AAU-----------------------------ACGUAGGGCGCGAGCGUU d.16.b.S.scabiei.fasta AAU-----------------------------ACGUAGGGCGCGAGCGUU d.16.b.S.neyagawaensis.fasta AAU-----------------------------ACGUAGGGCGCGAGCGUU d.16.b.S.diastatochromogenes.f AAU-----------------------------ACGUAGGGCGCGAGCGUU d.16.b.Streptomyces.sp.fasta AAU-----------------------------ACGUAGGGCGCAAGCGUU d.16.b.S.acidiscabies.fasta AAU-----------------------------ACGUAGGGCGCAAGCGUU d.16.b.S.griseus.fasta AAU-----------------------------ACGUAGGGCGCAAGCGUU d.16.b.S.ornatus.fasta AAU-----------------------------ACGUAGGGCGCAAGCGUU d.16.b.S.subrutilus.fasta AAU-----------------------------ACGUAGGGCGCAAGCGUU d.16.b.S.bikiniensis.fasta AAU-----------------------------ACGUAGGGCGCAAGCGUU d.16.b.S.galbus.fasta AAU-----------------------------ACGUAGGGCGCAAGCGUU d.16.b.S.hygroscopicus.fasta AAU-----------------------------ACGUAGGGCGCAAGCGUU d.16.b.S.lincolnensis.fasta AAU-----------------------------ACGUAGGGCGCAAGCGUU d.16.b.S.coelicolor.fasta AAU-----------------------------ACGUAGGGCGCAAGCGUU d.16.b.S.tendae.fasta AAU-----------------------------ACGUAGGGCGCAAGCGUU d.16.b.S.ambofaciens.fasta AAU-----------------------------ACGUAGGGCGCAAGCGUU d.16.b.S.eurythermus.fasta AAU-----------------------------ACGUAGGGCGCAAGCGUU d.16.b.S.nodosus.fasta AAU-----------------------------ACGUAGGGCGCGAGCGUU d.16.b.S.sampsonii.fasta AAU-----------------------------ACGUAGGGCGCAAGCGUU d.16.b.S.glaucescens.fasta AAU-----------------------------ACGUAGGGCGCAAGCGUU d.16.b.S.pseudogriseolus.fasta AAU-----------------------------ACGUAGGGCGCGAGCGUU d.16.b.S.caelestis.fasta AAU-----------------------------ACGUAGGGCGCGAGCGUU d.16.b.S.bluensis.fasta AAU-----------------------------ACGUAGGGCGCGAGCGUU d.16.b.S.espinosus.fasta AAU-----------------------------ACGUAGGGCGCGAGCGUU d.16.b.S.mashuensis.fasta AAU-----------------------------ACGUAGGGCGCAAGCGUU d.16.b.S.rimosus.fasta AAU-----------------------------ACGUAGGGCGCAAGCGUU d.16.b.S.limosus.fasta AAU-----------------------------ACGUAGGGCGCAAGCGUU d.16.b.S.odorifer.fasta AAU-----------------------------ACGUAGGGCGCAAGCGUU d.16.b.S.felleus.fasta AAU-----------------------------ACGUAGGGCGCAAGCGUU d.16.b.S.albidoflavus.fasta AAU-----------------------------ACGUAGGGCGCAAGCGUU d.16.b.S.gougerotii.fasta AAU-----------------------------ACGUAGGGCGCAAGCGUU d.16.b.S.rutgersensis.fasta AAU-----------------------------ACGUAGGGCGCAAGCGUU d.16.b.S.intermedius.fasta AAU-----------------------------ACGUAGGGCGCAAGCGUU d.16.b.S.thermodiastaticus.fas AAU-----------------------------ACGUAGGGCGCAAGCGUU d.16.b.S.thermoviolaceus.fasta AAU-----------------------------ACGUAGGGCGCAAGCGUU d.16.b.S.thermovulgaris.1.fast AAU-----------------------------ACGUAGGGCGCGAGCGUU d.16.b.S.thermovulgaris.2.fast AAU-----------------------------ACGUAGGGCGCGAGCGUU d.16.b.S.macrosporus.fasta AAU-----------------------------ACGUAGGGUGCGAGCGUU d.16.b.S.megasporus.fasta AAU-----------------------------ACGUAGGGUGCGAGCGUU d.16.b.S.thermolineatus.fasta AAU-----------------------------ACGUAGGGUGCGAGCGUU d.16.b.M.tuberculosis.2.fasta AAU-----------------------------ACGUAGGGUGCGAGCGUU d.16.b.M.tuberculosis.3.fasta AAU-----------------------------ACGUAGGGUGCGAGCGUU d.16.b.M.avium.fasta AAU-----------------------------ACGUAGGGUGCGAGCGUU d.16.b.M.leprae.fasta AAU-----------------------------ACGUAGGGUGCGAGCGUU d.16.b.M.leprae.GEN.fasta AAU-----------------------------ACGUAGGGUGCGAGCGUU d.16.b.M.tuberculosis.CDC1551. AAU-----------------------------ACGUAGGGUGCGAGCGUU d.16.b.M.tuberculosis.GEN.fast AAU-----------------------------ACGUAGGGUGCGAGCGUU d.16.b.N.asteroides.fasta AAU-----------------------------ACGUAGGGUGCGAGCGUU d.16.b.R.erythropolis.fasta AAU-----------------------------ACGUAGGGAGCAAGCGUU d.16.b.C.diphtheriae.fasta AAU-----------------------------ACGUAGGGUGCGAGCGUU d.16.b.A.israelii.fasta AAU-----------------------------ACGUAGGGCGCGAGCGUU d.16.b.B.hyodysenteriae.fasta AAU-----------------------------ACGUAGGAGGCAAACGUU d.16.b.G.subterranea.fasta AAG-----------------------------ACGUAGGGGGCGAGCGUU d.16.b.P.miotherma.fasta AAG-----------------------------ACGUAGGNGNCNAGCGUU d.16.b.B.andersonii.fasta AAU-----------------------------ACGUAAGGGNNNAGCGUU d.16.b.H.aurantiacus.fasta AAU-----------------------------ACGUAGGGGCCAAGCGUU d.16.b.Leptospirillium.sp.fast AAG-----------------------------ACAGAGGUGGCAAGCGUU d.16.b.A.aeolicus.fasta AAU-----------------------------ACGUAGGUCCCAAGCGUU d.16.b.A.pyrophilus.fasta AAU-----------------------------ACGUAGGUCCCGAGCGUU d.16.b.T.maritima.fasta AAU-----------------------------ACGUAGGGGGCAAGCGUU d.16.b.T.maritima.GEN.fasta AAU-----------------------------ACGUAGGGGGCAAGCGUU n.16.b.T.thermophilus.2.num.fa AAU-----------------------------ACGGAGGGCGCGAGCGUU s.16.b.T.thermophilus.2.schem. AAU-----------------------------ACGGAGGGCGCGAGCGUU d.16.b.T.thermophilus.2.fasta AAU-----------------------------ACGGAGGGCGCGAGCGUU s.16.b.T.thermophilus.1.schem. AAU-----------------------------ACGGAGGGCGCGAGCGUU n.16.b.T.thermophilus.1.num.fa AAU-----------------------------ACGGAGGGCGCGAGCGUU d.16.b.T.thermophilus.1.fasta AAU-----------------------------ACGGAGGGCGCGAGCGUU d.16.b.T.aquaticus.fasta AAU-----------------------------ACGGAGGGCGCGAGCGUU d.16.b.T.roseum.fasta AAG-----------------------------ACGUAGGGGGCGAGCGUU d.16.b.P.marina.fasta AAG-----------------------------ACGAACCGUCGGAACGUU d.16.b.P.staleyi.fasta AAU-----------------------------ACGAGAGGCCCAAACGUU d.16.b.P.Schlesner.fasta AAG-----------------------------ACGAACCGAGCGAACGUU d.16.b.G.obscuriglobus.1.fasta AAG-----------------------------ACGAACCGAGCGAACGUU d.16.b.I.pallida.fasta AAG-----------------------------ACGAACCGUGCAAACGUU d.16.a.P.abyssi.fasta AAU-----------------------------ACCGGCGGCCCGAGUGGU d.16.a.P.horikoshii.fasta AAU-----------------------------ACCGGCGGCCCGAGUGGU d.16.a.P.furiosus.fasta AAU-----------------------------ACCGGCGGCCCGAGUGGU d.16.a.T.celer.fasta AAU-----------------------------ACCGGCGGCCCGAGUGGU d.16.a.A.fulgidus.fasta AAU-----------------------------ACCGGCGGCCCGAGUGGC d.16.a.N.equitans.fasta AAC-----------------------------ACCCCCACCGCGAGCGGU d.16.a.A.pernix.K1.fasta AAU-----------------------------ACCAGCCCCGCGAGCGGU d.16.a.P.occultum.fasta AAU-----------------------------ACCAGCCCCGCGAGCGGU d.16.a.T.tenax.fasta AAU-----------------------------ACCAGCCCCGCGAGUGGU d.16.a.S.acidocaldarius.fasta AAU-----------------------------ACCAGCUCCGCGAGUGGU d.16.a.S.solfataricus.fasta AAU-----------------------------ACCAGCUCCGCGAGUGGU d.16.a.S.solfataricus.2.fasta AAU-----------------------------ACCAGCCCCGCGAGUGGU d.16.a.M.thermautotrophicus.1. AAC-----------------------------ACCGGCAGCUCAAGUGGU d.16.a.M.thermautotrophicus.2. AAC-----------------------------ACCGGCAGCUCAAGUGGU d.16.a.M.formicicum.fasta AAC-----------------------------ACCGGCAGCUCAAGUGGU d.16.a.M.vannielii.fasta AAU-----------------------------ACCGACGGCCCGAGUGGU d.16.a.H.marismortui.rrnA.fast AAU-----------------------------ACCGGCAGUCCGAGUGAU d.16.a.H.marismortui.rrnB.fast AAU-----------------------------ACCGGCAGUCCGAGUGAU d.16.a.Halobacterium.sp.fasta AAU-----------------------------ACCGGCAGUCCGAGUGAU d.16.a.N.bangense.fasta AAU-----------------------------ACCGGCAGCACGAGUGAU d.16.a.N.innermongoliae.fasta AAU-----------------------------ACCGGCAGCACGAGUGAU d.16.a.H.volcanii.fasta AAU-----------------------------ACCGGCAGCUCAAGUGAU d.16.a.M.hungatei.fasta AAU-----------------------------ACCGGCGGCUCGAGUGGU d.16.a.P.torridus.fasta AAC-----------------------------ACCCGCAGCUCAAGUGGU d.16.a.T.acidophilum.fasta AAC-----------------------------ACCCGCAGCUCGAGUGGU a.16.e.G.ardeae.fasta -----------------------------------GACGGCG-------- d.16.e.G.intestinalis.fasta -----------------------------------GACCGCGCAGCGGGC a.16.e.G.muris.fasta -----------------------------------GACGGACAUG----- d.16.e.A.bracteata.fasta -----------------------------------UGCGUUCC------- d.16.e.Glomus.sp.W3349.fasta ---------------------------------------------GGUUU d.16.e.S.cerradensis.fasta ---------------------------------------------GGUUU a.16.e.G.intraradices.fasta ---------------------------------------------GGUUU d.16.e.S.culisetae.fasta ---------------------------------------------GGUUU a.16.e.P.balamuthi.fasta GAGGGGGCUCGGACUUGGUCAUCUGUAGGUAUUUCAGGGGUGAUGGGCUC d.16.e.A.flavus.fasta ---------------------------------------------GGUUU d.16.e.T.caries.fasta ---------------------------------------------GGUUU d.16.e.M.circinelloides.fasta ---------------------------------------------GGUUC d.16.e.M.racemosus.fasta ---------------------------------------------GGUUC d.16.e.R.oryzae.fasta ---------------------------------------------GGUUU a.16.e.M.edulis.fasta ----------------------------------UUACUUUGAA-AAAUU a.16.e.P.magellanicus.fasta ----------------------------------UUACUUUGAA-AAAUU b.16.e.E.granulosus.fasta UCUGCGGGCGGAUGGC--------------ACGUUUACUUUGAACAAAUU d.16.e.D.melanogaster.fasta ----------------------------------UUACUUUGAACAAAUU b.16.e.C.koreana.fasta ----------------------------------UUACUUUGAAAAAAUU b.16.e.A.australis.fasta ----------------------------------UUACUUUGAAAAAAUU b.16.e.O.utahensis.fasta ----------------------------------UUACUUUGAACAAAUU b.16.e.A.salina.fasta ----------------------------------UUACUUUGAACAAAUU d.16.e.M.musculus.fasta ----------------------------------UUACUUUGAAAAAAUU d.16.e.R.norvegicus.fasta ----------------------------------UUACUUUGAAAAAAUU d.16.e.H.sapiens.fasta ----------------------------------UUACUUUGAAAAAAUU d.16.e.O.cuniculus.fasta ----------------------------------UUACUUUGAAAAAAUU d.16.e.X.borealis.fasta ----------------------------------UUACUUUGAAAAAAUU d.16.e.X.laevis.fasta ----------------------------------UUACUUUGAAAAAAUU d.16.e.A.castellanii.fasta --------------------------------GAUAAUGGAAUAGGACCC d.16.e.B.mandrillaris.fasta --------------------------------GAUAAUGGAAUAAG--CC d.16.e.P.falciparum.A.fasta --------------------------------AAUAACAAAAUUGAACAA d.16.e.P.falciparum.S.fasta --------------------------------AAUAACAAAUAUGAAUAA d.16.e.P.vivax.A.fasta --------------------------------AAUAACAAA-UUGAACAA d.16.e.P.vivax.O.fasta --------------------------------AAUAACAAAAUUGAACGA d.16.e.P.vivax.S.fasta --------------------------------AAUAACAAAAUUGAACAA d.16.e.E.histolytica.fasta --------------------------------GACAAUG---CUGAGGGG d.16.e.I.hoferi.fasta --------------------------------AAUAAUGGAAUAGGAUCC d.16.e.Dermocystidium.sp.fasta --------------------------------AAUAAUGGAAUAGGACAU d.16.e.S.destruens.fasta --------------------------------AAUAAUGGAAUAGGACGU d.16.e.A.unguiculata.fasta --------------------------------AAUAAUGGAAUAGGACUU d.16.e.D.grandis.fasta --------------------------------AAUAAUGGAAUAGGACUU d.16.e.A.macrogynus.fasta --------------------------------AAUAAUAGAAUAGGACUU d.16.e.B.emersonii.fasta --------------------------------AAUAAUAGAAUAGGACUC d.16.e.C.albicans.fasta --------------------------------CGUAAU------------ d.16.e.S.cerevisiae.fasta --------------------------------CGUAAU------------ d.16.e.N.crassa.fasta --------------------------------CGUAAU------------ d.16.e.P.anserina.fasta --------------------------------CGUAAU------------ d.16.e.C.immitis.fasta --------------------------------CGUAAU------------ d.16.e.L.major.fasta ------------------------------UGUGUGGC-------GCCUU d.16.e.T.cruzi.fasta UGUUGUGUCUCUGUG---------------UGUGUGGCACUCGUCGCCUU d.16.e.T.brucei.fasta --------------------------------UGUGGC------------ d.16.e.P.carinii.fasta --------------------------------UGUAAU------------ d.16.e.C.neoformans.fasta --------------------------------AAUAAUAGAAUAGGACGU d.16.e.Fungus.sp.QPX.fasta --------------------------------AAUAAUAGAAUAGGACGU d.16.e.U.maydis.fasta --------------------------------AAUAACAGAAUAGGACGU d.16.e.M.leidyi.fasta --------------------------------AAUAAUAGAAUAGGACUU d.16.e.T.cystophora.fasta --------------------------------AAUAAUGGAACAGGACUU d.16.e.M.prolifera.fasta --------------------------------AAUAAUGGAAGAGGACCU d.16.e.P.haeckeli.fasta --------------------------------AAUAAUGGAAUAAGAUCA d.16.e.E.rotunda.fasta --------------------------------AAUAAUAAUUUAGGACUU d.16.e.P.chromatophora.fasta --------------------------------AAUAAUAACAUAGGACUU d.16.e.A.majus.fasta --------------------------------GAUAACAUUAUAGGAUUU d.16.e.S.indicum.fasta --------------------------------GAUAACAUUAUAGGAUUU d.16.e.D.grandiflora.fasta --------------------------------GAUAACAUUAUAGGAUUU d.16.e.Pla.lanceolata.fasta --------------------------------GAUAACAUUAUAGGAUUU d.16.e.N.tabacum.fasta --------------------------------GAUAACAUUAUAGGAUUU d.16.e.A.thaliana.fasta --------------------------------GAUAACAUCAUAGGAUUU d.16.e.S.alba.fasta --------------------------------GAUAACAUCAUAGGAUUU d.16.e.S.tuberosum.fasta --------------------------------GAUAACAUUAUAGGAUU- d.16.e.F.x.ananassa.fasta --------------------------------GAUAACAUCAUAGGAUUU d.16.e.G.max.fasta --------------------------------GAUAACACCACAGGAUUC d.16.e.O.sativa.fasta --------------------------------GAUAACAUCAUAGGAUUC d.16.e.Z.mays.fasta --------------------------------GAUAACAUCAUAGGAUUC d.16.e.A.verticilliflorum.fast --------------------------------GAUAACGUCAUAGGAUUU d.16.e.G.spirotaenia.fasta --------------------------------AAUAACACCAUAGGACUC d.16.e.Staurastrum.sp.M752.fas --------------------------------AAUAACGCGAUAGGACUC d.16.e.C.paradoxa.fasta --------------------------------AAUAAUAAAAUAGGACCC d.16.e.G.nostochinearum.fasta --------------------------------AAUAAUAAAAUAGGACCU d.16.e.G.wittrockiana.fasta --------------------------------AAUAAUAAAUUAGGACCU d.16.e.C.luteoviridis.fasta --------------------------------AAUGACACGAUAGGACUC d.16.e.O.longa.fasta --------------------------------AAUAAUAGAAUAGGACUU d.16.e.P.weissei.fasta --------------------------------AAUAAUAGAAUAGGACUU d.16.e.C.citrina.fasta --------------------------------AAUAAUAGAAUAGGACUU d.16.e.G.steinii.fasta --------------------------------AAUAAUAGAAUAGGACUU d.16.e.Ple.lanceolata.fasta --------------------------------AAUAAUAGAAUAGGACUU d.16.e.O.quadricornutus.fasta --------------------------------AAUAAUAGAAUAGGACUU d.16.e.S.lemnae.fasta --------------------------------AAUAAUAGAAUAGGACUU d.16.e.S.mytilus.fasta --------------------------------AAUAAUAGAAUAGGACUU d.16.e.E.mobilis.fasta --------------------------------AAUAAUAGAAUAGGACUU d.16.e.O.granulifera.1.fasta --------------------------------AAUAAUAGAAUAGGACUU d.16.e.O.granulifera.2.fasta --------------------------------AAUAAUAGAAUAGGACUU d.16.e.U.gallina.fasta --------------------------------AAUAAUAGAAUAGGACUU d.16.e.U.pisces.fasta --------------------------------AAUAAUAGAAUAGGACUU d.16.e.P.lepisma.fasta --------------------------------AAUAAUAGAAUAGGACUU d.16.e.U.grandis.fasta --------------------------------AAUAAUAGAAUAGGACUU d.16.e.B.coli.fasta --------------------------------AAUAAC-GAAUGUGUCUA d.16.e.E.aediculatus.fasta --------------------------------UAUAAACGAAUUGGACCG d.16.e.T.thermophila.fasta --------------------------------AAUAAUGGAAUAGGACUA d.16.e.Bangia.sp.NWT.fasta --------------------------------AAUAAUAGAAUAGGACUU d.16.e.Bangia.sp.VIS7.fasta --------------------------------AAUAAUAGAAUAGGACUU d.16.e.E.carnea.fasta --------------------------------AAUAAUAGAAUAGGACUU d.16.e.R.parvula.fasta --------------------------------AAUAAUAGAAUAGGACUU d.16.e.C.coeruleus.fasta --------------------------------AAUAAUAGAAUAGGACUU d.16.e.P.aerugineum.1.fasta --------------------------------GAUAUUGGAAGAAGCUUU d.16.e.R.maculata.fasta --------------------------------GAUAAUAGAAUAGGACUU d.16.e.A.ambigua.fasta --------------------------------AAUAAUGAAAUAGGGUUU d.16.e.A.baicalensis.fasta --------------------------------AAUAAUGAAAUAGGGUUU d.16.e.S.nipponica.fasta --------------------------------AAUAAUAAGAUAGGACCU d.16.e.C.radiatus.fasta --------------------------------AAUAAUCAGAUAGGACCC d.16.e.C.criophilum.fasta --------------------------------AAUAAUGACAUAGGACYA d.16.e.A.capitellata.fasta --------------------------------AAUAAUGAGAUAGGACCU d.16.e.S.pupula.fasta --------------------------------AAUAAUGAGAUAGGACCU d.16.e.T.antarctica.fasta --------------------------------AAUAAUGAUAUAGGACCU d.16.e.E.triangulatum.fasta --------------------------------AAUAAUAAGAUAGGACCU d.16.e.A.bongranii.fasta --------------------------------AAUAAUAAGAUAGGACCU d.16.e.Pseudogomphonema.sp.fas --------------------------------AAUAAUGAGAUAGGACUU d.16.e.D.tenue.fasta --------------------------------AAUAAUGAGAUAGGACCU d.16.e.G.marina.fasta --------------------------------AAUAAUGAGAUAGGGCUU d.16.e.Thalassionema.sp.fasta --------------------------------AAUAAUAAGAUAGGACUU d.16.e.R.belgicae.fasta --------------------------------AAUAAUAAGAUAGGACCU d.16.e.Undatella.sp.fasta --------------------------------AAUAAUAAUAUAGGACCU d.16.e.C.belgica.fasta --------------------------------AAUAAUAAGAUAGGACUU d.16.e.O.sinensis.fasta --------------------------------AAUAAUAAGAUAGGACCU d.16.e.D.brightwellii.fasta --------------------------------AAUAAUAAGAUAGGACCU d.16.e.L.undulatum.fasta --------------------------------AAUAAUAAGAUAGGACCU d.16.e.T.eccentrica.fasta --------------------------------AAUAAUAAGAUAGGACUU d.16.e.T.pseudonana.fasta --------------------------------AAUAAUAAGAUAGGACCC d.16.e.S.costatum.fasta --------------------------------AAUAAUAAGAUAGGACUU d.16.e.P.laevis.fasta --------------------------------AAUAAUAAGAUAGGACCC d.16.e.L.borealis.fasta --------------------------------AAUAAUAAUAUAGGACUU d.16.e.P.pseudodenticulata.fas --------------------------------AAUAAUAAUAUAGGACUU d.16.e.B.mediterranea.fasta --------------------------------AAUAAUAAGAUAAGACCC d.16.e.B.pacifica.fasta --------------------------------AAUAAUAAGAUAGGACCC d.16.e.L.minuta.fasta --------------------------------AAUAAUAAGAUAGGACUU d.16.e.L.danicus.fasta --------------------------------AAUAAUGAGAUAGGAUUU d.16.e.Chaetoceros.sp.fasta --------------------------------AAUAAUAAGAUAGGACCU d.16.e.A.invadans.fasta --------------------------------AAUAAUAAGAUACGACCU d.16.e.L.giganteum.fasta --------------------------------AAUAAUAAGAUACGACCU d.16.e.M.varians.fasta --------------------------------AAUAAUGAAAUAGGACUC d.16.e.B.hominis.fasta --------------------------------AAUAAUAAUUGAAGGCUU d.16.e.P.marinus.fasta --------------------------------AAUAAUAGGAUAUGACUU d.16.e.T.gondii.fasta --------------------------------AAUAAUAAGAUAGGAUUU d.16.e.A.fundyense.fasta --------------------------------AAUAAUAAU-CAAGAUCG d.16.e.B.bigemina.fasta --------------------------------AAUAAUAGAGUAGGACCU d.16.e.B.canis.fasta --------------------------------AAUAAUAGAGUAGGACUU d.16.e.Babesia.sp.OKD.fasta --------------------------------AAUAAUAAAGUAGGACUU d.16.e.B.microti.1.fasta --------------------------------AAUAAUGAAGUAGGACUU d.16.e.B.microti.2.fasta --------------------------------AAUAAUGAAGUAGGACUU d.16.e.B.microti.3.fasta --------------------------------AAUAAUGAAGUAGGACUU d.16.e.B.microti.4.fasta --------------------------------AAUAAUGAAGUAGGACUU d.16.e.B.microti.5.fasta --------------------------------AAUAAUGAAGUAGGACUU d.16.e.B.rodhaini.fasta --------------------------------AAUAAUAAAGUAGGACUU d.16.e.B.gibsoni.fasta --------------------------------AAUAAUAAAGUAGGACUU d.16.e.B.bovis.fasta --------------------------------AAUAACCUUGUAUGACCC d.16.e.J.libera.fasta --------------------------------AAUAACGAUGCGGGACUC d.16.e.R.americana.fasta --------------------------------AAUGACAACGCGGGACUC d.16.e.B.ostreae.fasta --------------------------------AAUAAUAAGACACGACUU d.16.e.A.dasyae.fasta --------------------------------AAUAAUAGAAUAGGACUU d.16.e.A.hermannii.fasta --------------------------------AAUAAUAGAAUAGGACUU d.16.e.N.helminthoides.fasta --------------------------------AAUAAUAGAAUAGGACUU d.16.e.B.gelatinosum.fasta --------------------------------AAUAAUAGAAUAGGACUC d.16.e.N.tortuosa.fasta --------------------------------AAUAAUAGAAUAGGACUU d.16.e.T.hispida.fasta --------------------------------GAUAAUGGAAUAGGACUU d.16.e.T.violacea.4.fasta --------------------------------GAUAAUGGAAUAGGACUU d.16.e.T.violacea.1.fasta --------------------------------GAAAAUGGAAUAGGACUU d.16.e.T.violacea.2.fasta --------------------------------GAAAAUGGAAUAGGACUU d.16.e.N.shawii.fasta --------------------------------AAUAAUAGAAUAGGACUU d.16.e.B.investiens.fasta --------------------------------AAUAAUAGAAUAGGACUU d.16.e.B.macrosporum.fasta --------------------------------AAUAAUAGAAUAGGACUC d.16.e.A.plicata.fasta --------------------------------AAUAAUAGAAUAGGACCU d.16.e.C.officinalis.fasta --------------------------------AAUAAUAGAAUAGGACUC d.16.e.R.carriebowensis.fasta --------------------------------AAUAAUAGAAUAGGACUC d.16.e.B.hamifera.fasta --------------------------------AGUAAUAGAAUAGGACCU d.16.e.G.vagum.fasta --------------------------------AAUAAUAGAAUAGGACCU d.16.e.C.crispus.fasta --------------------------------AAUAAUAGAAUAGGACCU d.16.e.H.plana.fasta --------------------------------AAUAAUAGAAUAGGACCU d.16.e.R.leptophylla.fasta --------------------------------AAUAAUAGAAUAGGACCU d.16.e.P.pulvinata.fasta --------------------------------AAUAAUAGAAUAGGACCU d.16.e.C.rubrum.fasta --------------------------------AAUAAUAGAAUAGGACCU d.16.e.Gracilariopsis.sp.fasta --------------------------------AAUAAUAGAAUAGGACCC d.16.e.B.moritziana.fasta --------------------------------AAUAAUAGAAUAGGACCU d.16.e.H.rubra.fasta --------------------------------AAUAAUAGAAUAGGGCCG d.16.e.D.grisea.fasta --------------------------------AAUAAUAGAAUAGGACUC d.16.e.N.fowleri.fasta CUGCAG--------------------------AGUAGCUGUAUUUGAGCG d.16.e.N.gruberi.fasta CUGCAG--------------------------AGUAGCUGUAUUUGAGCG a.16.e.Hexamita.sp.fasta --------------------------------AAGAAUGACAUUGCUC-- d.16.e.T.foetus.fasta UUUU----------------------------AGGAAUGACUUAGCGCAG d.16.e.A.khaliulini.fasta -----------------------------------UGUAGGAUAUUUCA- d.16.e.E.aedis.fasta -----------------------------------UGCUUUUAAUUUCA- d.16.e.A.connecticus.fasta -----------------------------------AACAGGGUAUUCUA- d.16.e.I.barri.fasta -----------------------------------UGCGACGGAUUUCA- d.16.e.A.ferocious.fasta -----------------------------------CAUGAAGUAUGUCA- d.16.e.Amblyospora.sp.fasta -----------------------------------UACGGGUUAUUUCA- d.16.e.C.lunata.fasta -----------------------------------AGUAGAAUAUUUUA- d.16.e.P.anophelis.fasta -----------------------------------CGUUCUGUGUGACU- d.16.e.Hazardia.sp.fasta -----------------------------------UGUGCGGCGUGCUG- d.16.e.H.milleri.fasta -----------------------------------CGUGCAUCGUGCUG- d.16.e.P.simulii.fasta -----------------------------------CGUCACGGAGCCAC- d.16.e.W.palustris.fasta -----------------------------------CGUCACCUGUCCAC- d.16.e.Nosema.sp.03.fasta -------------------------------------------------- d.16.e.Nosema.sp.05.fasta -------------------------------------------------- d.16.e.Endoreticulatus.sp.fast -------------------------------------------------- d.16.e.Nosema.sp.02.fasta -------------------------------------------------- d.16.e.N.spodopterae.fasta -------------------------------------------------- d.16.e.N.trichoplusiae.fasta -------------------------------------------------- d.16.e.N.bombycis.27.fasta -------------------------------------------------- d.16.e.N.bombycis.02.fasta -------------------------------------------------- d.16.e.V.imperfecta.fasta -------------------------------------------------- d.16.e.N.furnacalis.fasta -------------------------------------------------- d.16.e.Microsporidium57864.fas -------------------------------------------------- d.16.e.Vairimorpha.sp.C21.fast -------------------------------------------------- d.16.e.N.oulemae.fasta -------------------------------------------------- d.16.e.N.necatrix.fasta -------------------------------------------------- d.16.e.V.necatrix.fasta -------------------------------------------------- d.16.e.N.apis.fasta -------------------------------------------------- d.16.e.O.occidentalis.fasta -------------------------------------------------- d.16.e.Microsporidium.sp.DP119 ------------------------------------GUUAAGUUUCCAA- d.16.e.V.corneae.fasta ------------------------------------GUGCGA-------- d.16.e.A.michaelis.fasta ------------------------------------GAUAGAUAGGGGC- d.16.e.T.contejeani.fasta ------------------------------------UU------------ d.16.e.E.hellem.fasta ------------------------------------GUUUUUAGUGGAU- d.16.e.Encephalitozoon.sp.fast ------------------------------------UCCUGAUGUGGAU- d.16.e.E.cuniculi.fasta ------------------------------------GUUGUGUGUGGAU- d.16.e.O.colligata.fasta ------------------------------------GUUGAAUAAGCUU- d.16.e.E.salmonis.fasta ------------------------------------GUUG--------A- d.16.e.N.salmonis.fasta ------------------------------------GUUG--------A- d.16.e.Enterocytozoonidae.sp.f ------------------------------------GUU---------A- d.16.e.E.bieneusi.fasta ------------------------------------GCU---------A- d.16.e.B.algerae.fasta ------------------------------------CCUUUCAUUUGAC- d.16.e.T.solenopsae.fasta ------------------------------------GCUAAU-UUUAAC- d.16.e.V.acridophagus.fasta ------------------------------------CUUUAACUCUGGU- d.16.e.Bacillidium.sp.fasta ------------------------------------UAAUAAAGCAUGG- d.16.e.P.cristatellae.fasta -----------------------------------GUAAUUUAGCAUGG- d.16.e.Pleistophora.sp.fasta ---------------------------------------------AGAU- d.16.e.O.operophterae.fasta ------------------------------------------GUUGCAG- d.16.e.F.magnivora.fasta -------------------------------------GUAUUGGCAUUC- d.16.e.G.atherinae.fasta -----------------------------------AGGGUUAUGCGCCG- d.16.e.Ichthyosporidium.sp.fas -----------------------------------UGUGAUGAGCGCUG- d.16.e.L.acerinae.fasta -----------------------------------GGGACAUAGCACCG- d.16.e.H.anguillarum.fasta -----------------------------------GGGGCACAGCGCGG- d.16.e.P.mirandellae.fasta -----------------------------------GGGGUACAGCGCGG- d.16.e.T.hominis.fasta -----------------------------------CGGGCAGUGCGCCA- d.16.e.V.culicis.fasta -----------------------------------GGGGCAGGGCGCCG- d.16.e.P.hippoglossoideos.fast -----------------------------------GGGGCGCAGCGCCG- d.16.e.Microgemma.sp.fasta -----------------------------------ACCAAAUAGAACGA- d.16.e.S.lophii.fasta -----------------------------------GCCGAAUAGAACGA- d.16.e.Pleistophora.sp.LS.fast -----------------------------------GGCGCGGAAGAAGG- d.16.e.D.gammarellum.fasta -----------------------------------GAAGAGCAGGGCUG- d.16.e.M.prosopium.fasta -----------------------------------GACGACCAGGAUCU- d.16.e.A.scoticae.fasta -------------------------------------CGGUGUGCAGCGC d.16.e.P.whitei.fasta -------------------------------------CGGCGGGCAGCAC a.16.c.C.coccineum.fasta AUCC---------------------------------------------- a.16.c.C.ruber.fasta AUCC---------------------------------------------- d.16.c.N.tabacum.fasta AUCC---------------------------------------------- d.16.c.S.oleracea.fasta AUCC---------------------------------------------- d.16.c.Z.mays.fasta AUCC---------------------------------------------- d.16.c.M.polymorpha.fasta AUCC---------------------------------------------- d.16.c.R.communis.fasta AUCC---------------------------------------------- d.16.c.C.vulgaris.fasta AUCC---------------------------------------------- d.16.c.P.wickerhamii.fasta AUCC---------------------------------------------- d.16.c.P.minor.fasta AUCC---------------------------------------------- d.16.c.N.olivacea.fasta AUCC---------------------------------------------- d.16.c.P.parkeae.fasta AUCC---------------------------------------------- d.16.c.C.reinhardtii.fasta GUCC---------------------------------------------- b.16.m.A.castellanii.fasta AUUCGCAUUGACUGGGU-------------------GUAAAGGGUGCGUA d.16.c.P.thurberi.fasta AUUCGGUUUAAUUAGGU-------------------GUAAAAGGUUGUUA b.16.m.C.crispus.fasta AUUCGGAUUAAUUGGGC-------------------GUAAAGAAUACGUA d.16.c.T.gondii.fasta UUCCAAAAUUACUGGGC-------------------GUAAAGUGUAUGUA b.16.m.N.crassa.fasta AUUCUGUAUACAUAUUGGAUAAUGACAAUAU-----GUACAU-UU----G b.16.m.P.anserina.fasta AUUCUGUAUACAUACCU-AUAAUGACGGUAU-----GUACAUCUU----G b.16.m.P.chrysogenum.fasta AUUCUAAAUAGAUUGUAUAUAAUGACAUAAU-----CUAUUUAUAA---G b.16.m.E.nidulans.fasta AUUCUAAAUAGAAUAAUGAUAAUGACAAUUUU----CUAUUUAUAA---G b.16.m.S.cerevisiae.fasta UAUAUUAAUAAUAAUAUUAAUUUAUUAUUAUUAAUAAUAUAUUUUAAUAG b.16.m.W.saturnus.m.fasta AA-----------------AUUUAUUUUUUU-----AUAUGUCG-AUUAG b.16.m.P.minor.fasta -----------------------------------AAUUUAUUU------ d.16.c.P.falciparum.fasta UU----------------------------------AUUCAUUUUAUUAG d.16.c.B.bovis.fasta AUUCGC------------------------------AUUUAUUG------ b.16.m.T.pyriformis.fasta AGCUCUGGCUAAUAC----AUGUGCCAGCAGCCGCGGUAAUACAUGAGGA d.16.m.S.sinuspaulianus.fasta AGUGCUGUCCAAAAC----UGGUGCCAGAAGACUCGGUAAGGCCAGAGGC b.16.m.P.tetraurelia.fasta GCCGCG------------------------------GUAAUACAUGAGUA b.16.m.D.discoideum.fasta CGCG--------------------------------GUAAUACGGAGGGG d.16.m.P.polycephalum.fasta AUCAAACCCCGGCUAAC-UUCGUGCCAGCAGCCGCGGUAAAACGGGGGGG b.16.m.P.littoralis.fasta CGCG--------------------------------GUAAUACGGAGGGG b.16.m.P.wickerhamii.fasta AUUCGGAAUGAUUGGGC----GUAAAGCGUGCGUAGAUUGUUAGAAUGGA d.16.c.H.africana.fasta AUCCGGAAUUAUUGGGC-------------------GUAAAGUG------ d.16.c.C.fragile.fasta AUCC---------------------------------------------- d.16.c.C.sertularioides.fasta AUCC---------------------------------------------- d.16.c.C.humicola.fasta AUCC---------------------------------------------- d.16.c.P.uvella.fasta ACCU---------------------------------------------- a.16.c.G.nostochinearum.fasta AUCC---------------------------------------------- a.16.c.G.wittrockiana.fasta AUCC---------------------------------------------- d.16.c.C.paradoxa.fasta AUCC---------------------------------------------- d.16.y.C.paradoxa.fasta AUCC---------------------------------------------- d.16.c.Cryptomonas.sp.fasta AUCC---------------------------------------------- d.16.c.P.palmata.fasta AUCC---------------------------------------------- d.16.c.H.akashiwo.fasta AUCC---------------------------------------------- d.16.c.S.pseudocostatum.fasta AUCC---------------------------------------------- d.16.c.P.littoralis.fasta AUCC---------------------------------------------- d.16.c.C.caldarium.fasta AUCC---------------------------------------------- a.16.c.E.huxleyi.fasta AUCC---------------------------------------------- d.16.c.E.gracilis.fasta AUCC---------------------------------------------- d.16.b.Anabaena.sp.fasta AUCC---------------------------------------------- d.16.b.Chlorogloeopsis.PCC7518 AUCC---------------------------------------------- d.16.b.Synechococcus.sp.fasta AUCC---------------------------------------------- d.16.b.Synechocystis.PCC6803.G AUCC---------------------------------------------- d.16.b.O.agardhii.fasta AUCC---------------------------------------------- d.16.b.Pleurocapsa.7516.fasta AUCC---------------------------------------------- d.16.b.M.aeruginosa.fasta AUCC---------------------------------------------- b.16.m.C.reinhardtii.fasta AAGC---------------------------------------------- d.16.m.C.eugametos.fasta UUGC---------------------------------------------- b.16.m.M.senile.fasta UAUA---------------------------------------------- d.16.b.S.pneumoniae.fasta GUCC---------------------------------------------- d.16.b.S.pyogenes.fasta GUCC---------------------------------------------- d.16.b.B.anthracis.fasta AUCC---------------------------------------------- d.16.b.B.cereus.1.fasta AUCC---------------------------------------------- d.16.b.E.faecalis.fasta GUCC---------------------------------------------- d.16.b.E.faecium2.fasta GUCC---------------------------------------------- d.16.b.L.monocytogenes.fasta GUCC---------------------------------------------- d.16.b.B.subtilis.fasta GUCC---------------------------------------------- d.16.b.B.subtilis.GEN.fasta GUCC---------------------------------------------- d.16.b.B.halodurans.fasta GUCC---------------------------------------------- d.16.b.S.aureus.fasta AUCC---------------------------------------------- d.16.b.S.aureus.GEN.fasta AUCC---------------------------------------------- d.16.b.L.lactis.GEN.fasta GUCC---------------------------------------------- d.16.b.S.pyogenes.GEN.fasta GUCC---------------------------------------------- d.16.b.L.acidophilus.fasta GUCC---------------------------------------------- d.16.b.M.capricolum.fasta AUCC---------------------------------------------- d.16.b.M.mycoides.fasta AUCC---------------------------------------------- d.16.b.E.rhusiopathiae.fasta AUCC---------------------------------------------- d.16.b.C.innocuum.fasta AUCC---------------------------------------------- d.16.b.M.genitalium.fasta AUCC---------------------------------------------- d.16.b.M.pneumoniae.GEN.fasta AUCC---------------------------------------------- d.16.b.M.pneumoniae.fasta AUCC---------------------------------------------- d.16.b.M.gallisepticum.fasta AUCC---------------------------------------------- d.16.b.U.urealyticum.fasta AUCC---------------------------------------------- d.16.b.U.urealyticum.GEN.fasta AUCC---------------------------------------------- d.16.b.M.hyopneumoniae.fasta AUCC---------------------------------------------- d.16.b.F.necrophorum.fasta AUCC---------------------------------------------- d.16.b.F.nucleatum.fasta AUCC---------------------------------------------- d.16.b.S.moniliformis.fasta AUCC---------------------------------------------- d.16.b.C.botulinum.F.fasta GUCC---------------------------------------------- d.16.b.C.tetani.fasta GUCC---------------------------------------------- d.16.b.C.perfringens.fasta AUCC---------------------------------------------- d.16.b.C.difficile.fasta AUCC---------------------------------------------- d.16.b.E.brachy.fasta AUCC---------------------------------------------- d.16.b.Epulopiscium.sp.fasta AUCC---------------------------------------------- d.16.b.H.chlorum.fasta GUCC---------------------------------------------- b.16.m.G.max.fasta CUUC---------------------------------------------- b.16.m.O.berteriana.fasta CUUC---------------------------------------------- b.16.m.S.cereale.fasta CUUC---------------------------------------------- b.16.m.T.aestivum.fasta CUUC---------------------------------------------- d.16.m.Z.mays.fasta CUUC---------------------------------------------- b.16.m.M.polymorpha.fasta AUUC---------------------------------------------- b.16.m.N.olivacea.fasta GUUC---------------------------------------------- d.16.b.G.liquefaciens.fasta GCUC---------------------------------------------- d.16.b.B.japonicum.fasta GCUC---------------------------------------------- d.16.b.R.acidophilus.fasta GUUC---------------------------------------------- d.16.b.A.caulinodans.fasta GCUC---------------------------------------------- d.16.b.B.quintana.fasta GUUC---------------------------------------------- d.16.b.M.loti.fasta GUUC---------------------------------------------- d.16.b.A.tumefaciens.fasta GUUC---------------------------------------------- d.16.b.B.bacilliformis.fasta GUUC---------------------------------------------- d.16.b.B.henselae.fasta GUUC---------------------------------------------- d.16.b.B.melitensis.fasta GUUC---------------------------------------------- d.16.b.R.orientis.fasta GUUC---------------------------------------------- d.16.b.Methylobacterium.sp.fas GCUC---------------------------------------------- d.16.b.R.bellii.fasta GUUC---------------------------------------------- d.16.b.R.felis.URRWXCal2.fasta GUUC---------------------------------------------- d.16.b.R.prowazekii.fasta GUUC---------------------------------------------- d.16.b.R.prowazekii.GEN.fasta GUUC---------------------------------------------- d.16.b.R.rickettsii.fasta GUUC---------------------------------------------- d.16.b.A.calcoaceticus.fasta AAUC---------------------------------------------- d.16.b.P.pacificensis.fasta AAUC---------------------------------------------- d.16.b.C.marismortui.fasta AAUC---------------------------------------------- d.16.b.H.halodenitrificans.fas AAUC---------------------------------------------- d.16.b.P.aeruginosa.fasta AAUC---------------------------------------------- d.16.b.P.aeruginosa.GEN.fasta AAUC---------------------------------------------- d.16.b.Pseudomonas.sp.fasta AAUC---------------------------------------------- d.16.b.P.putida.fasta AAUC---------------------------------------------- d.16.b.C.burnetii.fasta AAUC---------------------------------------------- d.16.b.M.capsulatus.fasta AAUC---------------------------------------------- d.16.b.L.pneumophila.1.fasta AAUC---------------------------------------------- d.16.b.L.pneumophila.2.fasta AAUC---------------------------------------------- d.16.b.A.vinosum.fasta AAUC---------------------------------------------- d.16.b.Beggiatoa.sp.fasta AAUC---------------------------------------------- d.16.b.A.hydrophila.fasta AAUC---------------------------------------------- d.16.b.S.putrefaciens.fasta AAUC---------------------------------------------- d.16.b.C.freundii.fasta AAUC---------------------------------------------- d.16.b.S.dysenteriae.1.fasta AAUC---------------------------------------------- d.16.b.K.pneumoniae.fasta AAUC---------------------------------------------- d.16.b.P.shigelloides.fasta AAUC---------------------------------------------- d.16.b.Y.pestis.fasta AAUC---------------------------------------------- d.16.b.Y.pseudotuberculosis.fa AAUC---------------------------------------------- d.16.b.S.dysenteriae.2.fasta AAUC---------------------------------------------- d.16.b.E.coli.0157G.GEN.fasta AAUC---------------------------------------------- d.16.b.E.coli.EDL.GEN.fasta AAUC---------------------------------------------- d.16.b.E.coli.fasta AAUC---------------------------------------------- d.16.b.E.coli.K12.GEN.fasta AAUC---------------------------------------------- h.16.b.E.coli.hlxnum.fasta AAUC---------------------------------------------- m.16.b.E.coli.mhg.fasta AAUC---------------------------------------------- s.16.b.E.coli.schem.fasta AAUC---------------------------------------------- d.16.b.S.typhimurium.fasta AAUC---------------------------------------------- d.16.b.S.marcescens.fasta AAUC---------------------------------------------- d.16.b.E.tarda.fasta AAUC---------------------------------------------- d.16.b.P.vulgaris.fasta AAUC---------------------------------------------- d.16.b.V.cholerae4.fasta AAUC---------------------------------------------- d.16.b.V.cholerae5.fasta AAUC---------------------------------------------- d.16.b.V.cholerae2.fasta AAUC---------------------------------------------- d.16.b.V.cholerae6.fasta AAUC---------------------------------------------- d.16.b.V.cholerae.fasta AAUC---------------------------------------------- d.16.b.V.cholerae.GEN.fasta AAUC---------------------------------------------- d.16.b.V.parahaemolyticus.fast AAUC---------------------------------------------- d.16.b.H.influenzae7.fasta AAUC---------------------------------------------- d.16.b.H.influenzae8.fasta AAUC---------------------------------------------- d.16.b.H.influenzae6.fasta AAUC---------------------------------------------- d.16.b.H.influenz.fasta AAUC---------------------------------------------- d.16.b.H.influenzae.fasta AAUC---------------------------------------------- d.16.b.P.multocida.fasta AAUC---------------------------------------------- d.16.b.P.multocida.GEN.fasta AAUC---------------------------------------------- d.16.b.X.albilineans.fasta ACUC---------------------------------------------- d.16.b.X.campestris.fasta ACUC---------------------------------------------- d.16.b.X.fastidiosa.GEN.fasta ACUC---------------------------------------------- d.16.b.D.nodosus.fasta AUUC---------------------------------------------- d.16.b.F.tularensis.fasta AAUC---------------------------------------------- d.16.b.B.parapertussis.fasta AAUC---------------------------------------------- d.16.b.B.pertussis.fasta AAUC---------------------------------------------- d.16.b.B.bronchiseptica2.fasta AAUC---------------------------------------------- d.16.b.u.proteobacterium.fasta AAUC---------------------------------------------- d.16.b.B.mallei.fasta AAUC---------------------------------------------- d.16.b.Burkholderia.sp.fasta AAUC---------------------------------------------- d.16.b.N.meningitidis.MD58.GEN AAUC---------------------------------------------- d.16.b.N.meningitidis.Z2491.GE AAUC---------------------------------------------- d.16.b.N.gonorrhoeae.fasta AAUC---------------------------------------------- d.16.b.C.testosteroni.fasta AAUC---------------------------------------------- d.16.b.D.desulfuricans.fasta AAUC---------------------------------------------- d.16.b.M.xanthus.fasta GUUC---------------------------------------------- d.16.b.D.thermophilus.fasta GUUC---------------------------------------------- d.16.b.B.burgdorferi.fasta GUUC---------------------------------------------- d.16.b.B.burgdorferi.GEN.fasta GUUC---------------------------------------------- d.16.b.B.hermsii.fasta GUUC---------------------------------------------- d.16.b.S.aurantia.fasta GUUC---------------------------------------------- d.16.b.T.pallidum.A.fasta GUUC---------------------------------------------- d.16.b.L.illini.fasta GUUC---------------------------------------------- d.16.b.L.interrogans.fasta GUUC---------------------------------------------- d.16.b.C.trachomatis.GEN.fasta AAUC---------------------------------------------- d.16.b.C.trachomatis.L2.fasta AAUC---------------------------------------------- d.16.b.C.muridarum.fasta AAUC---------------------------------------------- d.16.b.C.pneumoniae.AR39.fasta AAUC---------------------------------------------- d.16.b.C.pneumoniae.fasta AAUC---------------------------------------------- d.16.b.C.pneumoniae.J138.fasta AAUC---------------------------------------------- d.16.b.C.pneumoniae.CWL029.fas AAUC---------------------------------------------- d.16.b.C.psittaci.fasta AAUC---------------------------------------------- d.16.b.D.radiodurans.1.fasta ACCC---------------------------------------------- d.16.b.D.radiodurans.GEN.fasta ACCC---------------------------------------------- d.16.b.B.fragilis.fasta AUCC---------------------------------------------- d.16.b.P.gingivalis.fasta AUCC---------------------------------------------- d.16.b.C.vibrioforme.fasta GUCC---------------------------------------------- d.16.b.C.jejuni.fasta ACUC---------------------------------------------- d.16.b.C.jejuni.GEN.fasta ACUC---------------------------------------------- d.16.b.C.sputorum.fasta ACUC---------------------------------------------- d.16.b.H.pylori.26695.GEN.fast ACUC---------------------------------------------- d.16.b.H.pylori.J99.GEN.fasta ACUC---------------------------------------------- d.16.b.H.pylori2.fasta ACUC---------------------------------------------- d.16.b.A.capsulatum.fasta GGUC---------------------------------------------- d.16.b.H.foetida.fasta AUUC---------------------------------------------- d.16.b.A.globiformis.fasta AUCC---------------------------------------------- d.16.b.M.luteus.fasta AUCC---------------------------------------------- d.16.b.Frankia.sp.fasta GUCC---------------------------------------------- d.16.b.S.bottropensis.fasta GUCC---------------------------------------------- d.16.b.S.scabiei.fasta GUCC---------------------------------------------- d.16.b.S.neyagawaensis.fasta GUCC---------------------------------------------- d.16.b.S.diastatochromogenes.f GUCC---------------------------------------------- d.16.b.Streptomyces.sp.fasta GUCC---------------------------------------------- d.16.b.S.acidiscabies.fasta GUCC---------------------------------------------- d.16.b.S.griseus.fasta GUCC---------------------------------------------- d.16.b.S.ornatus.fasta GUCC---------------------------------------------- d.16.b.S.subrutilus.fasta GUCC---------------------------------------------- d.16.b.S.bikiniensis.fasta GUCC---------------------------------------------- d.16.b.S.galbus.fasta GUCC---------------------------------------------- d.16.b.S.hygroscopicus.fasta GUCC---------------------------------------------- d.16.b.S.lincolnensis.fasta GUCC---------------------------------------------- d.16.b.S.coelicolor.fasta GUCC---------------------------------------------- d.16.b.S.tendae.fasta GUCC---------------------------------------------- d.16.b.S.ambofaciens.fasta GUCC---------------------------------------------- d.16.b.S.eurythermus.fasta GUCC---------------------------------------------- d.16.b.S.nodosus.fasta GUCC---------------------------------------------- d.16.b.S.sampsonii.fasta GUCC---------------------------------------------- d.16.b.S.glaucescens.fasta GUCC---------------------------------------------- d.16.b.S.pseudogriseolus.fasta GUCC---------------------------------------------- d.16.b.S.caelestis.fasta GUCC---------------------------------------------- d.16.b.S.bluensis.fasta GUCC---------------------------------------------- d.16.b.S.espinosus.fasta GUCC---------------------------------------------- d.16.b.S.mashuensis.fasta GUCC---------------------------------------------- d.16.b.S.rimosus.fasta GUCC---------------------------------------------- d.16.b.S.limosus.fasta GUCC---------------------------------------------- d.16.b.S.odorifer.fasta GUCC---------------------------------------------- d.16.b.S.felleus.fasta GUCC---------------------------------------------- d.16.b.S.albidoflavus.fasta GUCC---------------------------------------------- d.16.b.S.gougerotii.fasta GUCC---------------------------------------------- d.16.b.S.rutgersensis.fasta GUCC---------------------------------------------- d.16.b.S.intermedius.fasta GUCC---------------------------------------------- d.16.b.S.thermodiastaticus.fas GUCC---------------------------------------------- d.16.b.S.thermoviolaceus.fasta GUCC---------------------------------------------- d.16.b.S.thermovulgaris.1.fast GUCC---------------------------------------------- d.16.b.S.thermovulgaris.2.fast GUCC---------------------------------------------- d.16.b.S.macrosporus.fasta GUCC---------------------------------------------- d.16.b.S.megasporus.fasta GUCC---------------------------------------------- d.16.b.S.thermolineatus.fasta GUCC---------------------------------------------- d.16.b.M.tuberculosis.2.fasta GUCC---------------------------------------------- d.16.b.M.tuberculosis.3.fasta GUCC---------------------------------------------- d.16.b.M.avium.fasta GUCC---------------------------------------------- d.16.b.M.leprae.fasta GUCC---------------------------------------------- d.16.b.M.leprae.GEN.fasta GUCC---------------------------------------------- d.16.b.M.tuberculosis.CDC1551. GUCC---------------------------------------------- d.16.b.M.tuberculosis.GEN.fast GUCC---------------------------------------------- d.16.b.N.asteroides.fasta GUCC---------------------------------------------- d.16.b.R.erythropolis.fasta GUCC---------------------------------------------- d.16.b.C.diphtheriae.fasta GUCC---------------------------------------------- d.16.b.A.israelii.fasta GUCC---------------------------------------------- d.16.b.B.hyodysenteriae.fasta GCUC---------------------------------------------- d.16.b.G.subterranea.fasta GCCC---------------------------------------------- d.16.b.P.miotherma.fasta GCCC---------------------------------------------- d.16.b.B.andersonii.fasta GCUC---------------------------------------------- d.16.b.H.aurantiacus.fasta GUCC---------------------------------------------- d.16.b.Leptospirillium.sp.fast GUUC---------------------------------------------- d.16.b.A.aeolicus.fasta GCGC---------------------------------------------- d.16.b.A.pyrophilus.fasta GCGC---------------------------------------------- d.16.b.T.maritima.fasta ACCC---------------------------------------------- d.16.b.T.maritima.GEN.fasta ACCC---------------------------------------------- n.16.b.T.thermophilus.2.num.fa ACCC---------------------------------------------- s.16.b.T.thermophilus.2.schem. ACCC---------------------------------------------- d.16.b.T.thermophilus.2.fasta ACCC---------------------------------------------- s.16.b.T.thermophilus.1.schem. ACCC---------------------------------------------- n.16.b.T.thermophilus.1.num.fa ACCC---------------------------------------------- d.16.b.T.thermophilus.1.fasta ACCC---------------------------------------------- d.16.b.T.aquaticus.fasta ACCC---------------------------------------------- d.16.b.T.roseum.fasta ACCC---------------------------------------------- d.16.b.P.marina.fasta AUUC---------------------------------------------- d.16.b.P.staleyi.fasta AUUC---------------------------------------------- d.16.b.P.Schlesner.fasta AUUC---------------------------------------------- d.16.b.G.obscuriglobus.1.fasta GUUC---------------------------------------------- d.16.b.I.pallida.fasta AUUC---------------------------------------------- d.16.a.P.abyssi.fasta GGCC---------------------------------------------- d.16.a.P.horikoshii.fasta GGCC---------------------------------------------- d.16.a.P.furiosus.fasta GGCC---------------------------------------------- d.16.a.T.celer.fasta GGCC---------------------------------------------- d.16.a.A.fulgidus.fasta GGCC---------------------------------------------- d.16.a.N.equitans.fasta GGCC---------------------------------------------- d.16.a.A.pernix.K1.fasta CGGG---------------------------------------------- d.16.a.P.occultum.fasta CGGG---------------------------------------------- d.16.a.T.tenax.fasta CAGG---------------------------------------------- d.16.a.S.acidocaldarius.fasta CGGG---------------------------------------------- d.16.a.S.solfataricus.fasta CGGG---------------------------------------------- d.16.a.S.solfataricus.2.fasta CGGG---------------------------------------------- d.16.a.M.thermautotrophicus.1. AGCC---------------------------------------------- d.16.a.M.thermautotrophicus.2. AGCC---------------------------------------------- d.16.a.M.formicicum.fasta GGCC---------------------------------------------- d.16.a.M.vannielii.fasta AGCC---------------------------------------------- d.16.a.H.marismortui.rrnA.fast GGCC---------------------------------------------- d.16.a.H.marismortui.rrnB.fast GGCC---------------------------------------------- d.16.a.Halobacterium.sp.fasta GGCC---------------------------------------------- d.16.a.N.bangense.fasta GACC---------------------------------------------- d.16.a.N.innermongoliae.fasta GACC---------------------------------------------- d.16.a.H.volcanii.fasta GACC---------------------------------------------- d.16.a.M.hungatei.fasta GGCC---------------------------------------------- d.16.a.P.torridus.fasta GGUC---------------------------------------------- d.16.a.T.acidophilum.fasta GAUC---------------------------------------------- a.16.e.G.ardeae.fasta -------------------------------------------------- d.16.e.G.intestinalis.fasta CGGCGC-------------------------------------------- a.16.e.G.muris.fasta -------------------------------------------------- d.16.e.A.bracteata.fasta -------------------------------------------------- d.16.e.Glomus.sp.W3349.fasta C------------------------------------------------- d.16.e.S.cerradensis.fasta C------------------------------------------------- a.16.e.G.intraradices.fasta C------------------------------------------------- d.16.e.S.culisetae.fasta U------------------------------------------------- a.16.e.P.balamuthi.fasta CGGUCUGUUAUUCCUGAGGUAUUCGGAUGAUUGAGGGGUCUAACCAGCAA d.16.e.A.flavus.fasta C------------------------------------------------- d.16.e.T.caries.fasta C------------------------------------------------- d.16.e.M.circinelloides.fasta A------------------------------------------------- d.16.e.M.racemosus.fasta A------------------------------------------------- d.16.e.R.oryzae.fasta A------------------------------------------------- a.16.e.M.edulis.fasta AGAGUGU-------------------------UCAAAGCAGGC-A----- a.16.e.P.magellanicus.fasta AGAGUGU-------------------------UCAAAGCAGGC-A----- b.16.e.E.granulosus.fasta UGAGUCG-------------------------UCAAGCCAGGCCG----- d.16.e.D.melanogaster.fasta AGAGUGC-------------------------UUAAAGCAGGCUU----- b.16.e.C.koreana.fasta GGAGUGC-------------------------UCAAAGCAGGC-G----- b.16.e.A.australis.fasta AGAGUGC-------------------------UCAAAGCAGGC------- b.16.e.O.utahensis.fasta AGAGUGC-------------------------UCAAAUCAGGUCC----- b.16.e.A.salina.fasta AGAGUGC-------------------------UUAAAGCAGGU------- d.16.e.M.musculus.fasta AGAGUGU-------------------------UCAAAGCAGGCCC----- d.16.e.R.norvegicus.fasta AGAGUGU-------------------------UCAAAGCAGGCCC----- d.16.e.H.sapiens.fasta AGAGUGU-------------------------UCAAAGCAGGCCC----- d.16.e.O.cuniculus.fasta AGAGUGU-------------------------UCAAAGCAGGCCC----- d.16.e.X.borealis.fasta AGAGUGU-------------------------UCCAAGCAGGCC------ d.16.e.X.laevis.fasta AGAGUGU-------------------------UCCAAGCAGGCC------ d.16.e.A.castellanii.fasta UGU------------------------------CCUCCUAUUUU------ d.16.e.B.mandrillaris.fasta UCU------------------------------CUGCUUAUUUU------ d.16.e.P.falciparum.A.fasta GCUAA--------------------------AAUUUUUUGUUCU------ d.16.e.P.falciparum.S.fasta GCUAAUU------------------------AUUUUUUUUUUCA------ d.16.e.P.vivax.A.fasta GUCAG---------------------------AAUUUUUGUUCU------ d.16.e.P.vivax.O.fasta GUAAA---------------------------AACUUG-GUUCA------ d.16.e.P.vivax.S.fasta GUCAA---------------------------AACUAUGUUUCU------ d.16.e.E.histolytica.fasta AU-------------------------------------GUCAA------ d.16.e.I.hoferi.fasta CGA----------------------------------UCUUAUU------ d.16.e.Dermocystidium.sp.fasta UGG----------------------------------UUCUAUU------ d.16.e.S.destruens.fasta UGG----------------------------------UUCUAUU------ d.16.e.A.unguiculata.fasta UGG----------------------------------UUCUAUU------ d.16.e.D.grandis.fasta UGG----------------------------------UUCUAUU------ d.16.e.A.macrogynus.fasta UGG----------------------------------UUCUAUU------ d.16.e.B.emersonii.fasta UGG----------------------------------UUCUAUU------ d.16.e.C.albicans.fasta -------------------------------------------------- d.16.e.S.cerevisiae.fasta -------------------------------------------------- d.16.e.N.crassa.fasta -------------------------------------------------- d.16.e.P.anserina.fasta -------------------------------------------------- d.16.e.C.immitis.fasta -------------------------------------------------- d.16.e.L.major.fasta UGAGGG----------------------------GUUUAGUGC------- d.16.e.T.cruzi.fasta UGUGGGAAA----------------------UCCGUGUGGCACU------ d.16.e.T.brucei.fasta -GCGCA---------------------------CAUUCGGCUC------- d.16.e.P.carinii.fasta -------------------------------------------------- d.16.e.C.neoformans.fasta GCGG---------------------------------UUCUAUU------ d.16.e.Fungus.sp.QPX.fasta GCGG---------------------------------UUCUAUU------ d.16.e.U.maydis.fasta GCGG---------------------------------UUCUAUU------ d.16.e.M.leidyi.fasta UGG----------------------------------UCUUAUU------ d.16.e.T.cystophora.fasta CGG----------------------------------UCCCGUU------ d.16.e.M.prolifera.fasta CGG----------------------------------UCCUAUU------ d.16.e.P.haeckeli.fasta CGG----------------------------------UCUUUUU------ d.16.e.E.rotunda.fasta UGG----------------------------------UUCUAUU------ d.16.e.P.chromatophora.fasta CUG----------------------------------UUCUAUU------ d.16.e.A.majus.fasta CGG----------------------------------UCCUAUU------ d.16.e.S.indicum.fasta CGG----------------------------------UCCUAUU------ d.16.e.D.grandiflora.fasta CGG----------------------------------UCCUAUU------ d.16.e.Pla.lanceolata.fasta CGG----------------------------------UCCUAUU------ d.16.e.N.tabacum.fasta CGG----------------------------------UCCUAUU------ d.16.e.A.thaliana.fasta CGA----------------------------------UCCUAUU------ d.16.e.S.alba.fasta CGG----------------------------------UCCUAUU------ d.16.e.S.tuberosum.fasta CGG----------------------------------UCCUAUUU----- d.16.e.F.x.ananassa.fasta CGG----------------------------------UCCUAUU------ d.16.e.G.max.fasta UGA----------------------------------UCCUAUU------ d.16.e.O.sativa.fasta CGG----------------------------------UCCUAUU------ d.16.e.Z.mays.fasta CGG----------------------------------UCCUAUU------ d.16.e.A.verticilliflorum.fast UGA----------------------------------UCCUAUU------ d.16.e.G.spirotaenia.fasta UGG----------------------------------UCUUAUU------ d.16.e.Staurastrum.sp.M752.fas UGG----------------------------------UCCUAUU------ d.16.e.C.paradoxa.fasta UGG----------------------------------UUCUAUU------ d.16.e.G.nostochinearum.fasta UGG----------------------------------UUCUAUU------ d.16.e.G.wittrockiana.fasta CGU----------------------------------UCCUAUU------ d.16.e.C.luteoviridis.fasta UGG-----------------------------------CUUAUC------ d.16.e.O.longa.fasta UAG-----------------------------------UCUCCU------ d.16.e.P.weissei.fasta UAG-----------------------------------UCUCCU------ d.16.e.C.citrina.fasta UAG-----------------------------------UCUCCU------ d.16.e.G.steinii.fasta UAG-----------------------------------UCUCCU------ d.16.e.Ple.lanceolata.fasta UAG-----------------------------------UCUCCU------ d.16.e.O.quadricornutus.fasta UAG-----------------------------------UCUCCU------ d.16.e.S.lemnae.fasta UAG-----------------------------------UCUCCU------ d.16.e.S.mytilus.fasta UAG-----------------------------------UCUCCU------ d.16.e.E.mobilis.fasta UAG-----------------------------------UCUCCU------ d.16.e.O.granulifera.1.fasta UAG-----------------------------------UCUCCU------ d.16.e.O.granulifera.2.fasta UAG-----------------------------------UCUCCU------ d.16.e.U.gallina.fasta UAG-----------------------------------UCUCCU------ d.16.e.U.pisces.fasta UAG-----------------------------------UCUCCU------ d.16.e.P.lepisma.fasta GAG-----------------------------------UCUCCU------ d.16.e.U.grandis.fasta GGG-----------------------------------UCUCCU------ d.16.e.B.coli.fasta GAA-----------------------------------UCU--------- d.16.e.E.aediculatus.fasta UGUGCCCGUAA--------------------CUGGGCUUCUCCUUA---- d.16.e.T.thermophila.fasta -AG-----------------------------------UCCAUU------ d.16.e.Bangia.sp.NWT.fasta GGG----------------------------------CUCUAUU------ d.16.e.Bangia.sp.VIS7.fasta GGU----------------------------------CCCUAUU------ d.16.e.E.carnea.fasta UGG----------------------------------UUUUAUU------ d.16.e.R.parvula.fasta UGG----------------------------------UUCUAUU------ d.16.e.C.coeruleus.fasta UGG----------------------------------UUCUAUU------ d.16.e.P.aerugineum.1.fasta UGC----------------------------------UU---AU------ d.16.e.R.maculata.fasta UGG----------------------------------AACUAUU------ d.16.e.A.ambigua.fasta UGGCA----------------------------------CUAUU------ d.16.e.A.baicalensis.fasta UGGCA----------------------------------CUAUU------ d.16.e.S.nipponica.fasta UGGUA----------------------------------CUAUU------ d.16.e.C.radiatus.fasta UGGUA----------------------------------CUAUU------ d.16.e.C.criophilum.fasta UUGUA----------------------------------CUAUU------ d.16.e.A.capitellata.fasta UGGUA----------------------------------CUAUU------ d.16.e.S.pupula.fasta UGGUA----------------------------------CUAUU------ d.16.e.T.antarctica.fasta UGGUA----------------------------------CUAUU------ d.16.e.E.triangulatum.fasta UGGUA----------------------------------CUAUU------ d.16.e.A.bongranii.fasta GGGUA----------------------------------CUAUU------ d.16.e.Pseudogomphonema.sp.fas UUUCG----------------------------------CUAUU------ d.16.e.D.tenue.fasta GGGUA----------------------------------CUAUU------ d.16.e.G.marina.fasta CGGUA----------------------------------CUAUU------ d.16.e.Thalassionema.sp.fasta UAGUA----------------------------------CUAUU------ d.16.e.R.belgicae.fasta GGGUA----------------------------------CUAUU------ d.16.e.Undatella.sp.fasta UGGUA----------------------------------CUAUU------ d.16.e.C.belgica.fasta UGGUA----------------------------------CUAUU------ d.16.e.O.sinensis.fasta CGGGA----------------------------------CUAUU------ d.16.e.D.brightwellii.fasta CGGUA----------------------------------CUAUU------ d.16.e.L.undulatum.fasta CGGUA----------------------------------CUAUU------ d.16.e.T.eccentrica.fasta CGGAA----------------------------------CUAUU------ d.16.e.T.pseudonana.fasta UGGUA----------------------------------CUAUU------ d.16.e.S.costatum.fasta UGAGU----------------------------------CUAUU------ d.16.e.P.laevis.fasta UGGUG----------------------------------CUAUU------ d.16.e.L.borealis.fasta UUGUA----------------------------------CUAUU------ d.16.e.P.pseudodenticulata.fas UUGUA----------------------------------CUAUU------ d.16.e.B.mediterranea.fasta AGGUU----------------------------------CUAUU------ d.16.e.B.pacifica.fasta UGGUA----------------------------------CUAUU------ d.16.e.L.minuta.fasta UGGUA----------------------------------CUAUU------ d.16.e.L.danicus.fasta CGGUA----------------------------------CUAUU------ d.16.e.Chaetoceros.sp.fasta CGGUA----------------------------------CUAUU------ d.16.e.A.invadans.fasta UGGUGGU--------------------------------CUAUU------ d.16.e.L.giganteum.fasta UGGUGGU--------------------------------CUAUU------ d.16.e.M.varians.fasta AGGUU----------------------------------CUAUU------ d.16.e.B.hominis.fasta UCGUGUU--------------------------------CGAUU------ d.16.e.P.marinus.fasta CGG----------------------------------UCAUAUU------ d.16.e.T.gondii.fasta CGG----------------------------------CCCUAUU------ d.16.e.A.fundyense.fasta UGG----------------------------------UUCUUUU------ d.16.e.B.bigemina.fasta UGG----------------------------------UUCUAUU------ d.16.e.B.canis.fasta UGG----------------------------------UUCUAUU------ d.16.e.Babesia.sp.OKD.fasta UGG----------------------------------UUCUAUU------ d.16.e.B.microti.1.fasta UGG----------------------------------UUCUAUU------ d.16.e.B.microti.2.fasta UGG----------------------------------UUCUAUU------ d.16.e.B.microti.3.fasta UGG----------------------------------UUCUAUU------ d.16.e.B.microti.4.fasta UGG----------------------------------UUCUAUU------ d.16.e.B.microti.5.fasta UGG----------------------------------UUCUAUU------ d.16.e.B.rodhaini.fasta UGG----------------------------------UUCUAUU------ d.16.e.B.gibsoni.fasta UGG----------------------------------UUCUAUU------ d.16.e.B.bovis.fasta UG-------------------------------------UCGUA------ d.16.e.J.libera.fasta CGG----------------------------------UCGCGCU------ d.16.e.R.americana.fasta CGG----------------------------------UUGCGCU------ d.16.e.B.ostreae.fasta CGGCGCCGCC----------------------UCGGCGGUUGUU------ d.16.e.A.dasyae.fasta GGUUUC----------------------------------UAUU------ d.16.e.A.hermannii.fasta GGUUUC----------------------------------UAUU------ d.16.e.N.helminthoides.fasta GGUUUC----------------------------------UAUU------ d.16.e.B.gelatinosum.fasta G-UACC----------------------------------UAUU------ d.16.e.N.tortuosa.fasta GGUUUC----------------------------------UAUU------ d.16.e.T.hispida.fasta GGUUUC----------------------------------UAUU------ d.16.e.T.violacea.4.fasta GGUUUC----------------------------------UAUU------ d.16.e.T.violacea.1.fasta GGUUUC----------------------------------UAUU------ d.16.e.T.violacea.2.fasta GGUUUC----------------------------------UAUU------ d.16.e.N.shawii.fasta GGUUUC----------------------------------UAUU------ d.16.e.B.investiens.fasta GGUGUC----------------------------------UAUU------ d.16.e.B.macrosporum.fasta G-UUUC----------------------------------UAUU------ d.16.e.A.plicata.fasta --UGUC----------------------------------CUUU------ d.16.e.C.officinalis.fasta GGUCUU-----------------------------------AUU------ d.16.e.R.carriebowensis.fasta GGUUUUC--------------------------------CUAUU------ d.16.e.B.hamifera.fasta GUGUUC----------------------------------UGUU------ d.16.e.G.vagum.fasta G-GUUC----------------------------------UGUU------ d.16.e.C.crispus.fasta GUUUCC----------------------------------UGUU------ d.16.e.H.plana.fasta GUUUUC----------------------------------UAUU------ d.16.e.R.leptophylla.fasta GUUUUC----------------------------------UAUU------ d.16.e.P.pulvinata.fasta GUUUCC----------------------------------UGUU------ d.16.e.C.rubrum.fasta G-GUCC----------------------------------UGUU------ d.16.e.Gracilariopsis.sp.fasta G-GUUC----------------------------------UAUU------ d.16.e.B.moritziana.fasta G-GUUC----------------------------------UGUU------ d.16.e.H.rubra.fasta CUGAUGC--------------------------------CUAUU------ d.16.e.D.grisea.fasta GCUCCU-----------------------------------GUU------ d.16.e.N.fowleri.fasta AAGGU---------------------------------UGGACU------ d.16.e.N.gruberi.fasta AAGGU---------------------------------UGCACC------ a.16.e.Hexamita.sp.fasta -------------------------------------------------- d.16.e.T.foetus.fasta -------------------------------------------------- d.16.e.A.khaliulini.fasta -------------------------------------------------- d.16.e.E.aedis.fasta -------------------------------------------------- d.16.e.A.connecticus.fasta -------------------------------------------------- d.16.e.I.barri.fasta -------------------------------------------------- d.16.e.A.ferocious.fasta -------------------------------------------------- d.16.e.Amblyospora.sp.fasta -------------------------------------------------- d.16.e.C.lunata.fasta -------------------------------------------------- d.16.e.P.anophelis.fasta -------------------------------------------------- d.16.e.Hazardia.sp.fasta -------------------------------------------------- d.16.e.H.milleri.fasta -------------------------------------------------- d.16.e.P.simulii.fasta -------------------------------------------------- d.16.e.W.palustris.fasta -------------------------------------------------- d.16.e.Nosema.sp.03.fasta -------------------------------------------------- d.16.e.Nosema.sp.05.fasta -------------------------------------------------- d.16.e.Endoreticulatus.sp.fast -------------------------------------------------- d.16.e.Nosema.sp.02.fasta -------------------------------------------------- d.16.e.N.spodopterae.fasta -------------------------------------------------- d.16.e.N.trichoplusiae.fasta -------------------------------------------------- d.16.e.N.bombycis.27.fasta -------------------------------------------------- d.16.e.N.bombycis.02.fasta -------------------------------------------------- d.16.e.V.imperfecta.fasta -------------------------------------------------- d.16.e.N.furnacalis.fasta -------------------------------------------------- d.16.e.Microsporidium57864.fas -------------------------------------------------- d.16.e.Vairimorpha.sp.C21.fast -------------------------------------------------- d.16.e.N.oulemae.fasta -------------------------------------------------- d.16.e.N.necatrix.fasta -------------------------------------------------- d.16.e.V.necatrix.fasta -------------------------------------------------- d.16.e.N.apis.fasta -------------------------------------------------- d.16.e.O.occidentalis.fasta -------------------------------------------------- d.16.e.Microsporidium.sp.DP119 -------------------------------------------------- d.16.e.V.corneae.fasta -------------------------------------------------- d.16.e.A.michaelis.fasta -------------------------------------------------- d.16.e.T.contejeani.fasta -------------------------------------------------- d.16.e.E.hellem.fasta -------------------------------------------------- d.16.e.Encephalitozoon.sp.fast -------------------------------------------------- d.16.e.E.cuniculi.fasta -------------------------------------------------- d.16.e.O.colligata.fasta -------------------------------------------------- d.16.e.E.salmonis.fasta -------------------------------------------------- d.16.e.N.salmonis.fasta -------------------------------------------------- d.16.e.Enterocytozoonidae.sp.f -------------------------------------------------- d.16.e.E.bieneusi.fasta -------------------------------------------------- d.16.e.B.algerae.fasta -------------------------------------------------- d.16.e.T.solenopsae.fasta -------------------------------------------------- d.16.e.V.acridophagus.fasta -------------------------------------------------- d.16.e.Bacillidium.sp.fasta -------------------------------------------------- d.16.e.P.cristatellae.fasta -------------------------------------------------- d.16.e.Pleistophora.sp.fasta -------------------------------------------------- d.16.e.O.operophterae.fasta -------------------------------------------------- d.16.e.F.magnivora.fasta -------------------------------------------------- d.16.e.G.atherinae.fasta -------------------------------------------------- d.16.e.Ichthyosporidium.sp.fas -------------------------------------------------- d.16.e.L.acerinae.fasta -------------------------------------------------- d.16.e.H.anguillarum.fasta -------------------------------------------------- d.16.e.P.mirandellae.fasta -------------------------------------------------- d.16.e.T.hominis.fasta -------------------------------------------------- d.16.e.V.culicis.fasta -------------------------------------------------- d.16.e.P.hippoglossoideos.fast -------------------------------------------------- d.16.e.Microgemma.sp.fasta -------------------------------------------------- d.16.e.S.lophii.fasta -------------------------------------------------- d.16.e.Pleistophora.sp.LS.fast -------------------------------------------------- d.16.e.D.gammarellum.fasta -------------------------------------------------- d.16.e.M.prosopium.fasta -------------------------------------------------- d.16.e.A.scoticae.fasta -------------------------------------------------- d.16.e.P.whitei.fasta -------------------------------------------------- a.16.c.C.coccineum.fasta -------------GGAAUGAUUGGGCGUAAAGAGUCUGUAGGUGGC---- a.16.c.C.ruber.fasta -------------GGAAUUAUUGGGCGUAAAGCGUCUGUAGAUGGC---- d.16.c.N.tabacum.fasta -------------GGAAUGAUUGGGCGUAAAGCGUCUGUAGGUGGC---- d.16.c.S.oleracea.fasta -------------GGAAUGAUUGGGCGUAAAGCGUCUGUAGGUGGC---- d.16.c.Z.mays.fasta -------------GGAAUGAUUGGGCGUAAAGCGUCUGUAGGUGGC---- d.16.c.M.polymorpha.fasta -------------GGAAUGAUUGGGCGUAAAGCGUCUGUAGGUGGC---- d.16.c.R.communis.fasta -------------GGAAUGAUUGGGCGUAAAGCGUCUGUAGGUGGC---- d.16.c.C.vulgaris.fasta -------------GGAAUGAUUGGGCGUAAAGCGUCUGUAGGUGGC---- d.16.c.P.wickerhamii.fasta -------------GGAAUGAUUGGGCGUAAAGCGUCUGUAGGUUGU---- d.16.c.P.minor.fasta -------------GGAAUGAUUGGGCGUAAAGCGUCUGUAGGUGGC---- d.16.c.N.olivacea.fasta -------------GGAAUCAUUGGGCGUAAAGCGUUCGUAGGUGGU---- d.16.c.P.parkeae.fasta -------------GGAAUCAUUGGGCGUAAAGCGUCUGUAGGUGGU---- d.16.c.C.reinhardtii.fasta -------------GGAAUGAUUGGGCGUAAAGCGUCUGUAGGUGGC---- b.16.m.A.castellanii.fasta GG------------UGGUUUGUUAAGUUUCAAAGUAAAUG---------- d.16.c.P.thurberi.fasta GGCUUUUCGUUAAGUGUUUUGUUAAAGUCCAAAAUUAUUUAACCAU---- b.16.m.C.crispus.fasta AG------------UUGAAAAUCCAAUUUUAAGAUAAAUU---------- d.16.c.T.gondii.fasta GG------------UGGAUUGGUAUGUUCUUCCUUAAAUA---------- b.16.m.N.crassa.fasta UCUUGACUAA-UUACGUGCCAGCAGUCGCGGCAAUACGUAAGAGACU--- b.16.m.P.anserina.fasta UCUUGACCAA-UUGCGUGCCAGCAGUCGCGGCAAUACGUAAGAGACU--- b.16.m.P.chrysogenum.fasta UCUUGACCAAACUACGUGCCAGCAGUCGCG-UAAUACGUAGGAGGCU--- b.16.m.E.nidulans.fasta UCUUGACCAAACUACCUGCCAGCAGUCGCGGUAAUACGUAGAAGACU--- b.16.m.S.cerevisiae.fasta UCCUGACUAAUAUUUGUGCCAGCAGUCGCGGUAACACAAAGAGGGCG--- b.16.m.W.saturnus.m.fasta UACCGAUUAAGAUAUGUGCCAGCAUUCGCGGUUAUACAUAGGGUGCA--- b.16.m.P.minor.fasta --------------UAUUAAAUAGGUUUAAAUUAUACAAAAGU------- d.16.c.P.falciparum.fasta -------------GCGUAAAGCGUUUUAAGGUUUUAUAUUAA-------- d.16.c.B.bovis.fasta ------------GGCAUAAAGCAUCCUUAGAUGGUUUAUUAUAUU----- b.16.m.T.pyriformis.fasta GCGAGCGUUAUCCAUAUUGACUGAGUGUAUUAAAUACGUAGGAU------ d.16.m.S.sinuspaulianus.fasta GCAAACGUUAGUCGUCCUAAUCAGGCGUAAAGGGUUUGUAGGCU------ b.16.m.P.tetraurelia.fasta GCUAGCGUUAAUCGUCCUUAUUGAGCGUACAGAGUGAGUCGGCG------ b.16.m.D.discoideum.fasta GCAAGCAUUAUUCGUAAGGAUUGGGCGUAAAGGGUGCGUAGGCUG----- d.16.m.P.polycephalum.fasta GUUAGUGUUAUUCGUGAUGACUGGGCGUAAAGGGUACGUAGGCAGAU--- b.16.m.P.littoralis.fasta GCAAGCCUUAUUCGUCAUAACUGGGCGUAAAGGGCCCGUAGGUUGCU--- b.16.m.P.wickerhamii.fasta UUUCUAUAUAAAAAUCAAGGCAACACCUUGAUAGAUAGAAAAGCAUU--- d.16.c.H.africana.fasta --------------UUUUAAGGUGGCUUUAUAAGUCUAUCG--------- d.16.c.C.fragile.fasta -------------GAAAUUAUUGGGCGUAAAGAGUUUGUAGGUGGU---- d.16.c.C.sertularioides.fasta -------------GGAAUUAUUGGGCGUUAAGGGUCCGAAGGUGGU---- d.16.c.C.humicola.fasta -------------GGAAUGAUUGGGCGUAAAGCGUCUGUAGGUGGU---- d.16.c.P.uvella.fasta -------------GGUAUGAUUGGGCGUAAAGGGUCUGUAGGCGGU---- a.16.c.G.nostochinearum.fasta -------------GGAAUUAUUGGGCGUAAAGAGUUCGUAGGUGGU---- a.16.c.G.wittrockiana.fasta -------------GGAAUUAUUGGGCGUAAAGGGUUCGUAGGUGGU---- d.16.c.C.paradoxa.fasta -------------GGAAUCAUUGGGCGUAAAGAGUUCGUAGGUGGC---- d.16.y.C.paradoxa.fasta -------------GGAAUCAUUGGGCGUAAAGAGUUCGUAGGUGGC---- d.16.c.Cryptomonas.sp.fasta -------------GGAAUUACUGGGCAUAAAGCGUCUGUAGGUUGU---- d.16.c.P.palmata.fasta -------------GGAAUCACUGGGCGUAAAGUGUA-GUAGGUGGC---- d.16.c.H.akashiwo.fasta -------------GGAAUCACUGGGCGUAAAGCGUCUGUAGGUGGU---- d.16.c.S.pseudocostatum.fasta -------------GGAAUCACUGGGCGUAAAGCGUCUGUAGGUGGU---- d.16.c.P.littoralis.fasta -------------GGAAUUACUGGGCGUAAAGCGUUUGUAGGUGGU---- d.16.c.C.caldarium.fasta -------------GGAAUCACUGGGCGUAAAGCGUCUGUAGGUGGU---- a.16.c.E.huxleyi.fasta -------------GGAAUCAUUGGGCGUAAAGCGCCUGUAGGUUGU---- d.16.c.E.gracilis.fasta -------------GGAAUUAUUGGGCGUAAAGAGUUUGUAGGCGGU---- d.16.b.Anabaena.sp.fasta -------------GGAAUGAUUGGGCGUAAAGCGUCCGCAGGUGGC---- d.16.b.Chlorogloeopsis.PCC7518 -------------GGAAUGAUUGGGCGUAAAGGGUCCGUAGGUGGU---- d.16.b.Synechococcus.sp.fasta -------------GGAAUUAUUGGGCGUAAAGCGCCUGCAGGCGGU---- d.16.b.Synechocystis.PCC6803.G -------------GGAAUUAUUGGGCGUAAAGCGUCCGUAGGUGGU---- d.16.b.O.agardhii.fasta -------------GGAAUGAUUGGGCGUAAAGAGUCCGUAGGUAGU---- d.16.b.Pleurocapsa.7516.fasta -------------GGAAUCAUUGGGCGUAAAGCGUCCGCAGGUGGC---- d.16.b.M.aeruginosa.fasta -------------GGAAUUAUUGGGCGUAAAGCGUCCGCAGGUGGU---- b.16.m.C.reinhardtii.fasta -------------GUCUUGACUAGGCAGGCAGCGCGUCUGAGCGU----- d.16.m.C.eugametos.fasta -------------AUAAUGAUUGGGUA--UUGCGUGUGAAAGCAU----- b.16.m.M.senile.fasta -------------AGUAAAAAGGCGUAAAGGAUGUGUAGGCCAAG----- d.16.b.S.pneumoniae.fasta -------------GGAUNNAUUGGGCGUNAAGCGAGCGCAGGCGGU---- d.16.b.S.pyogenes.fasta -------------GGAUNUAUUGGGCGNNNAGCGAGCGCAGGCGGU---- d.16.b.B.anthracis.fasta -------------GGAAUUAUUGGGCGUAAAGCGCGCGCAGGUGGU---- d.16.b.B.cereus.1.fasta -------------GGAAUUNUUGGGCGUNAAGCGCGCGCAGGUGGU---- d.16.b.E.faecalis.fasta -------------GGAUUUAUUGGGCGUAAAGCGAGCGCAGGCGGU---- d.16.b.E.faecium2.fasta -------------GGAUUUAUUGGGCGUAAAGCGAGCGCAGGCGGU---- d.16.b.L.monocytogenes.fasta -------------GGAUUUAUUGGGCGUAAAGCGCGCGCAGGCGGU---- d.16.b.B.subtilis.fasta -------------GGAAUUAUUGGGCGUAAAGGGCUCGCAGGCGGU---- d.16.b.B.subtilis.GEN.fasta -------------GGAAUUAUUGGGCGUAAAGGGCUCGCAGGCGGU---- d.16.b.B.halodurans.fasta -------------GGAAUUAUUGGGCGUAAAGCGCGCGCAGGCGGU---- d.16.b.S.aureus.fasta -------------GGAAUUAUUGGGCGUAAAGCGCGCGUAGGCGGU---- d.16.b.S.aureus.GEN.fasta -------------GGAAUUAUUGGGCGUAAAGCGCGCGUAGGCGGU---- d.16.b.L.lactis.GEN.fasta -------------GGAUUUAUUGGGCGUAAAGCGAGCGCAGGUGGU---- d.16.b.S.pyogenes.GEN.fasta -------------GGAUUUAUUGGGCGUAAAGCGAGCGCAGGCGGU---- d.16.b.L.acidophilus.fasta -------------GGAUUUAUUGGGCGUAAAGCGAGCGCAGGCGGA---- d.16.b.M.capricolum.fasta -------------GGAUUUAUUGGGCGUAUAGGGUGCGUAGGCGGU---- d.16.b.M.mycoides.fasta -------------GGAUUUAUUGGGCGUAUAGGGUGCGUAGGCGGU---- d.16.b.E.rhusiopathiae.fasta -------------GGAAUUAUUGGGCGUAAAGGGAGCGCAGGCGGU---- d.16.b.C.innocuum.fasta -------------GGAAUCAUUGGGCGUAAAGGGUGCGUAGGUGGC---- d.16.b.M.genitalium.fasta -------------GGAUUUAUUGGGCGUAAAGCAAGCGCAGGCGGA---- d.16.b.M.pneumoniae.GEN.fasta -------------GGAUUUAUUGGGCGUAAAGCAAGCGCAGGCGGA---- d.16.b.M.pneumoniae.fasta -------------GGAUUUAUUGGGCGUAAAGCAAGCGCAGGCGGA---- d.16.b.M.gallisepticum.fasta -------------GGAUUUAUUGGGCGUAAAACAAGCGCAGGCGGA---- d.16.b.U.urealyticum.fasta -------------GGAUUUACUGGGCGUAAAACGAGCGCAGGCGGG---- d.16.b.U.urealyticum.GEN.fasta -------------GGAUUUACUGGGCGUAAAACGAGCGCAGGCGGG---- d.16.b.M.hyopneumoniae.fasta -------------GGAAUUAUUGGGCGUAAAGCGUCCGUAGGUUUU---- d.16.b.F.necrophorum.fasta -------------GGAUUUAUUGGGCGUAAAGCACGUCUAGGCGGC---- d.16.b.F.nucleatum.fasta -------------GGAUUUAUUGGGCGUAAAGCGCGUCUAGGUGGU---- d.16.b.S.moniliformis.fasta -------------GGAAUUAUUGGGCUUAAAGGGCAUCUAGGCGGU---- d.16.b.C.botulinum.F.fasta -------------GGAUUUACUGGGCGUAAAGGGUGCGUAGGCGGA---- d.16.b.C.tetani.fasta -------------GGAUUUACUGGGCGUAAAGGGUGCGUAGGCGGA---- d.16.b.C.perfringens.fasta -------------GGAUUUACUGGGCGUAAAGGGAGCGUAGGCGGA---- d.16.b.C.difficile.fasta -------------GGAUUUACUGGGCGUAAAGGGUGCGUAGGCGGU---- d.16.b.E.brachy.fasta -------------GGAAUUAUUGGGCGUAAAGGGUACGUAGGUGGC---- d.16.b.Epulopiscium.sp.fasta -------------GGAUUUACUGGGUGUAAAGGGUGUGUAGGCGGU---- d.16.b.H.chlorum.fasta -------------GGAAUGACUGGGCGUAAAGCGCGUGCAGGCGGA---- b.16.m.G.max.fasta -------------GGAAUGACUGGGCGUAAAGGGCACGUAGGCGGU---- b.16.m.O.berteriana.fasta -------------GGAAUGACUGGGCGUAAAGGGCACGUAGGCGGU---- b.16.m.S.cereale.fasta -------------GGAAUGACUGGGCGUAAAGGGCACGUAGGCGGU---- b.16.m.T.aestivum.fasta -------------GGAAUGACUGGGCGUAAAGGGCACGUAGGCGGU---- d.16.m.Z.mays.fasta -------------GGAAUGACUGGGCGUAAAGGGCACGUAGGCGGU---- b.16.m.M.polymorpha.fasta -------------GGAAUGACUAGGCGUAAAGGGCACGUAGGCGGU---- b.16.m.N.olivacea.fasta -------------AGCAUGACUGGGCGUAAAGGGCACGUAGGCUGU---- d.16.b.G.liquefaciens.fasta -------------GGAAUGACUGGGCGUAAAGGGCGCGUAGGCGGU---- d.16.b.B.japonicum.fasta -------------GGAAUCACUGGGCGUAAAGGGUGCGUAGGCGGG---- d.16.b.R.acidophilus.fasta -------------GGAUUUACUGGGCGUAAAGCGCACGUAGGCNGA---- d.16.b.A.caulinodans.fasta -------------GGAAUCACUGGGCGUAAAGCGCACGUAGGCGGA---- d.16.b.B.quintana.fasta -------------GGAUUUACUGGGCGUAAAGCGCAUGUAGGCGGA---- d.16.b.M.loti.fasta -------------GGAAUUACUGGGCGUAAAGCGCACGUAGGCGGA---- d.16.b.A.tumefaciens.fasta -------------GGAAUUACUGGGCGUAAAGCGCACGUAGGCGGA---- d.16.b.B.bacilliformis.fasta -------------GGAUUUACUGGGCGUAAAGCGCAUGUAGGCGGA---- d.16.b.B.henselae.fasta -------------GGAUUUACUGGGCGUAAAGCGCAUGUAGGCGGA---- d.16.b.B.melitensis.fasta -------------GGAUUUACUGGGCGUAAAGCGCACGUAGGCGGA---- d.16.b.R.orientis.fasta -------------GGAAUUACUGGGCGUAAAGCGCGCGUAGGCGGA---- d.16.b.Methylobacterium.sp.fas -------------GGAAUCACUGGGCGUAAAGGGCGCGUAGGCGGC---- d.16.b.R.bellii.fasta -------------GGAAUUACUGGGCGUAAAGAGUGCGUAGGCGGU---- d.16.b.R.felis.URRWXCal2.fasta -------------GGAAUUACUGGGCGUAAAGAGUGCGUAGGCGGU---- d.16.b.R.prowazekii.fasta -------------GGAAUUACUGGGCGUAAAGAGUGCGUAGGCGGU---- d.16.b.R.prowazekii.GEN.fasta -------------GGAAUUACUGGGCGUAAAGAGUGCGUAGGCGGU---- d.16.b.R.rickettsii.fasta -------------GGAAUUACUGGGCGUAAAGAGUGCGUAGGCGGU---- d.16.b.A.calcoaceticus.fasta -------------GGAUUUACUGGGCGUAAAGCGUGCGUAGGCGGC---- d.16.b.P.pacificensis.fasta -------------GGAAUUACUGGGCGUAAAGCGAGCGUAGGUGGC---- d.16.b.C.marismortui.fasta -------------GGAAUUACUGGGCGUAAAGCGCGCGUAGGCGGC---- d.16.b.H.halodenitrificans.fas -------------GGAAUUACUGGGCGUAAAGCGCGCGUAGGCGGC---- d.16.b.P.aeruginosa.fasta -------------GGAAUUACUGGGCGUAAAGCGCGCGUAGGUGGU---- d.16.b.P.aeruginosa.GEN.fasta -------------GGAAUUACUGGGCGUAAAGCGCGCGUAGGUGGU---- d.16.b.Pseudomonas.sp.fasta -------------GGAAUUACUGGGCGUAAAGCGCGCGUAGGUGGU---- d.16.b.P.putida.fasta -------------GGAAUUACUGGGCGUAAAGCGCGCGUGGGUGGU---- d.16.b.C.burnetii.fasta -------------GGAAUCACUGGGCGUAAAGCGCGCGUAGGUGGA---- d.16.b.M.capsulatus.fasta -------------GGAAUUACUGGGCGUAAAGCGCGCGUAGGCGGU---- d.16.b.L.pneumophila.1.fasta -------------GGAAUUACUGGGCGUAAAGGGUGCGUAGGUGGU---- d.16.b.L.pneumophila.2.fasta -------------GGAAUUACUGGGCGUAAAGGGUGCGUAGGUGGU---- d.16.b.A.vinosum.fasta -------------GGAAUCACUGGGCGUAAAGCGCACGUAGGCGGC---- d.16.b.Beggiatoa.sp.fasta -------------GGAAUUACUGGGCGUAAAGCGUACGUAGGCGGC---- d.16.b.A.hydrophila.fasta -------------GGAAUUACUGGGCGUAAAGCGCACGCAGGCGGU---- d.16.b.S.putrefaciens.fasta -------------GGAAUUACUGGGCGUAAAGCGUGCGCAGGCGGU---- d.16.b.C.freundii.fasta -------------GGAAUUACUGGGCGUAAAGCGCACGCAGGCGGU---- d.16.b.S.dysenteriae.1.fasta -------------GGAAUUACUGGGCGUAAAGCGCACGCAGGCGGU---- d.16.b.K.pneumoniae.fasta -------------GGAAUUACUGGGCGUAAAGCGCACGCAGGCGGU---- d.16.b.P.shigelloides.fasta -------------GGAAUUACUGGGCGUAAAGCGCACGCAGGCGGU---- d.16.b.Y.pestis.fasta -------------GGAAUUACUGGGCGUAAAGCGCACGCAGGCGGU---- d.16.b.Y.pseudotuberculosis.fa -------------GGAAUUACUGGGCGUAAAGCGCACGCAGGCGGU---- d.16.b.S.dysenteriae.2.fasta -------------GGAAUUACUGGGCGUAAAGCGCACGCAGGCGGU---- d.16.b.E.coli.0157G.GEN.fasta -------------GGAAUUACUGGGCGUAAAGCGCACGCAGGCGGU---- d.16.b.E.coli.EDL.GEN.fasta -------------GGAAUUACUGGGCGUAAAGCGCACGCAGGCGGU---- d.16.b.E.coli.fasta -------------GGAAUUACUGGGCGUAAAGCGCACGCAGGCGGU---- d.16.b.E.coli.K12.GEN.fasta -------------GGAAUUACUGGGCGUAAAGCGCACGCAGGCGGU---- h.16.b.E.coli.hlxnum.fasta -------------GGAAUUACUGGGCGUAAAGCGCACGCAGGCGGU---- m.16.b.E.coli.mhg.fasta -------------GGAAUUACUGGGCGUAAAGCGCACGCAGGCGGU---- s.16.b.E.coli.schem.fasta -------------GGAAUUACUGGGCGUAAAGCGCACGCAGGCGGU---- d.16.b.S.typhimurium.fasta -------------GGAAUUACUGGGCGUAAAGCGCACGCAGGCGGU---- d.16.b.S.marcescens.fasta -------------GGAAUUACUGGGCGUAAAGCGCACGCAGGCGGU---- d.16.b.E.tarda.fasta -------------GGAAUUACUGGGCGUAAAGCGCACGCAGGCGGU---- d.16.b.P.vulgaris.fasta -------------GGAAUUACUGGGCGUAAAGCGCACGCAGGCGGU---- d.16.b.V.cholerae4.fasta -------------GGAAUUACUGGGCGUAAAGCGCAUGCAGGUGGU---- d.16.b.V.cholerae5.fasta -------------GGAAUUACUGGGCGUAAAGCGCAUGCAGGUGGU---- d.16.b.V.cholerae2.fasta -------------GGAAUUACUGGGCGUAAAGCGCAUGCAGGUGGU---- d.16.b.V.cholerae6.fasta -------------GGAAUUACUGGGCGUAAAGCGCAUGCAGGUGGU---- d.16.b.V.cholerae.fasta -------------GGAAUUACUGGGCGUAAAGCGCAUGCAGGUGGU---- d.16.b.V.cholerae.GEN.fasta -------------GGAAUUACUGGGCGUAAAGCGCAUGCAGGUGGU---- d.16.b.V.parahaemolyticus.fast -------------GGAAUUACUGGGCGUAAAGCGCAUGCAGGUGGU---- d.16.b.H.influenzae7.fasta -------------GGAAUAACUGGGCGUAAAGGGCACGCAGGCGGU---- d.16.b.H.influenzae8.fasta -------------GGAAUAACUGGGCGUAAAGGGCACGCAGGCGGU---- d.16.b.H.influenzae6.fasta -------------GGAAUAACUGGGCGUAAAGGGCACGCAGGCGGU---- d.16.b.H.influenz.fasta -------------GGAAUAACUGGGCGUAAAGGGCACGCAGGCGGU---- d.16.b.H.influenzae.fasta -------------GGAAUAACUGGGCGUAAAGGGCACGCAGGCGGU---- d.16.b.P.multocida.fasta -------------GGAAUAACUGGGCGUAAAGGGCACGCAGGCGGA---- d.16.b.P.multocida.GEN.fasta -------------GGAAUAACUGGGCGUAAAGGGCACGCAGGCGGA---- d.16.b.X.albilineans.fasta -------------GGAAUUACUGGGCGUAAAGCGUGCGUAGGUGGU---- d.16.b.X.campestris.fasta -------------GGAAUUACUGGGCGUAAAGCGUGCGUAGGUGGU---- d.16.b.X.fastidiosa.GEN.fasta -------------GGAAUUACUGGGCGUAAAGGGUGCGUAGGUGGU---- d.16.b.D.nodosus.fasta -------------GGAAUGACUGGGCGUAAAGCGCACGCAGGUGGU---- d.16.b.F.tularensis.fasta -------------GGAAUUACUGGGCGUAAAGGGUCUGUAGGUGGU---- d.16.b.B.parapertussis.fasta -------------GGAAUUACUGGGCGUAAAGCGUGCGCAGGCGGU---- d.16.b.B.pertussis.fasta -------------GGAAUUACUGGGCGUAAAGCGUGCGCAGGCGGU---- d.16.b.B.bronchiseptica2.fasta -------------GGAAUUACUGGGCGUAAAGCGUGCGCAGGCGGU---- d.16.b.u.proteobacterium.fasta -------------GGAAUUACUGGGCGUAAAGAGUGCGCAGGCGGU---- d.16.b.B.mallei.fasta -------------GGAAUUACUGGGCGUAAAGCGUGCGCAGGCGGU---- d.16.b.Burkholderia.sp.fasta -------------GGAAUUACUGGGCGUAAAGCGUGCGCAGGCGGU---- d.16.b.N.meningitidis.MD58.GEN -------------GGAAUUACUGGGCGUAAAGCGGGCGCAGACGGU---- d.16.b.N.meningitidis.Z2491.GE -------------GGAAUUACUGGGCGUAAAGCGGGCGCAGACGGU---- d.16.b.N.gonorrhoeae.fasta -------------GGAAUUACUGGGCGUAAAGCGGGCGCAGACGGU---- d.16.b.C.testosteroni.fasta -------------GGAAUUACUGGGCGUAAAGCGUGCGCAGGCGGU---- d.16.b.D.desulfuricans.fasta -------------GGAAUUACUGGGCGUAAAGCGCACGUAGGCUGU---- d.16.b.M.xanthus.fasta -------------GGAAUUAUUGGGCGUAAAGCGCGUGUAGGCGGC---- d.16.b.D.thermophilus.fasta -------------GGAGUCACUGGGCGUAAAGCGCACGUAGGGCGU---- d.16.b.B.burgdorferi.fasta -------------GGGAUUAUUGGGCGUAAAGGGUGAGUAGGCGGA---- d.16.b.B.burgdorferi.GEN.fasta -------------GGGAUUAUUGGGCGUAAAGGGUGAGUAGGCGGA---- d.16.b.B.hermsii.fasta -------------GGGAUUAUUGGCCGUAAAGGGUGAGUAGGCGGA---- d.16.b.S.aurantia.fasta -------------GGAAUUAUUGGGCGUAAAGGGCACGCAGGCGGU---- d.16.b.T.pallidum.A.fasta -------------GGAAUUAUUGGGCGUAAAGGGCAUGCAGGCGGA---- d.16.b.L.illini.fasta -------------GGAAUCACUGGGCGUAAAGGGUGCGCAGGCGGA---- d.16.b.L.interrogans.fasta -------------GGAAUCAUUGGGCGUAAAGGGUGCGUAGGCGGA---- d.16.b.C.trachomatis.GEN.fasta -------------GGAUUUAUUGGGCGUAAAGGGCGUGUAGGCGGA---- d.16.b.C.trachomatis.L2.fasta -------------GGAUUUAUUGGGCGUAAAGGGCGUGUAGGCGGA---- d.16.b.C.muridarum.fasta -------------GGAUUUAUUGGGCGUAAAGGGCGUGUAGGCGGA---- d.16.b.C.pneumoniae.AR39.fasta -------------GGAUUUAUUGGGCGUAAAGGGCGUGUAGGCGGA---- d.16.b.C.pneumoniae.fasta -------------GGAUUUAUUGGGCGUAAAGGGCGUGUAGGCGGA---- d.16.b.C.pneumoniae.J138.fasta -------------GGAUUUAUUGGGCGUAAAGGGCGUGUAGGCGGA---- d.16.b.C.pneumoniae.CWL029.fas -------------GGAUUUAUUGGGCGUAAAGGGCGUGUAGGCGGA---- d.16.b.C.psittaci.fasta -------------GGAUUUAUUGGGCGUAAAGGGCGUGUAGGCGGA---- d.16.b.D.radiodurans.1.fasta -------------GGAAUCACUGGGCGUAAAGGGCGUGUAGGCGGA---- d.16.b.D.radiodurans.GEN.fasta -------------GGAAUCACUGGGCGUAAAGGGCGUGUAGGCGGA---- d.16.b.B.fragilis.fasta -------------GGAUUUAUUGGGUUUAAAGGGAGCGUAGGUGGA---- d.16.b.P.gingivalis.fasta -------------GGAUUUAUUGGGUUUAAAGGGUGCGUAGGUUGU---- d.16.b.C.vibrioforme.fasta -------------GGAUUUACUGGGUGUAAAGGGUGCGCAGGCGGA---- d.16.b.C.jejuni.fasta -------------GGAAUCACUGGGCGUAAAGGGCGCGUAGGCGGA---- d.16.b.C.jejuni.GEN.fasta -------------GGAAUCACUGGGCGUAAAGGGCGCGUAGGCGGA---- d.16.b.C.sputorum.fasta -------------GGAAUCACUGGGCGUAAAGGACGCGUAGGUGGA---- d.16.b.H.pylori.26695.GEN.fast -------------GGAAUCACUGGGCGUAAAGAGCGCGUAGGCGGG---- d.16.b.H.pylori.J99.GEN.fasta -------------GGAAUCACUGGGCGUAAAGAGCGCGUAGGCGGG---- d.16.b.H.pylori2.fasta -------------GGAAUCACUGGGCGUAAAGAGCGCGUAGGCGGG---- d.16.b.A.capsulatum.fasta -------------GGAAUUAUUGGGCGUAAAGGGUCCGUAG-CGGG---- d.16.b.H.foetida.fasta -------------GGAAUUAUUGGGCGUAAAGGGCGCGUAGGCGGU---- d.16.b.A.globiformis.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGU---- d.16.b.M.luteus.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGU---- d.16.b.Frankia.sp.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.bottropensis.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGU---- d.16.b.S.scabiei.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGU---- d.16.b.S.neyagawaensis.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGU---- d.16.b.S.diastatochromogenes.f -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGU---- d.16.b.Streptomyces.sp.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGU---- d.16.b.S.acidiscabies.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.griseus.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.ornatus.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.subrutilus.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.bikiniensis.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.galbus.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.hygroscopicus.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.lincolnensis.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.coelicolor.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.tendae.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.ambofaciens.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.eurythermus.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.nodosus.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.sampsonii.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.glaucescens.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.pseudogriseolus.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.caelestis.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.bluensis.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.espinosus.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.mashuensis.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.rimosus.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.limosus.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.odorifer.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.felleus.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.albidoflavus.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.gougerotii.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.rutgersensis.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.intermedius.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.thermodiastaticus.fas -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.thermoviolaceus.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.thermovulgaris.1.fast -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.thermovulgaris.2.fast -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.macrosporus.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.megasporus.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.S.thermolineatus.fasta -------------GGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGC---- d.16.b.M.tuberculosis.2.fasta -------------GGAAUUACUGGGCGUAAAGAGCUCGUAGGUGGU---- d.16.b.M.tuberculosis.3.fasta -------------GGAAUUACUGGGCGUAAAGAGCUCGUAGGUGGU---- d.16.b.M.avium.fasta -------------GGAAUUACUGGGCGUAAAGAGCUCGUAGGUGGU---- d.16.b.M.leprae.fasta -------------GGAAUUACUGGGCGUAAAGAGCUCGUAGGUGGU---- d.16.b.M.leprae.GEN.fasta -------------GGAAUUACUGGGCGUAAAGAGCUCGUAGGUGGU---- d.16.b.M.tuberculosis.CDC1551. -------------GGAAUUACUGGGCGUAAAGAGCUCGUAGGUGGU---- d.16.b.M.tuberculosis.GEN.fast -------------GGAAUUACUGGGCGUAAAGAGCUCGUAGGUGGU---- d.16.b.N.asteroides.fasta -------------GGAAUUACUGGGCGUAAAGAGCUUGUAGGCGGU---- d.16.b.R.erythropolis.fasta -------------GGAAUUACUGGGCGUAAAGAGUUCGUAGGCGGU---- d.16.b.C.diphtheriae.fasta -------------GGAAUUACUGGGCGUAAAGAGCUCGUAGGUGGU---- d.16.b.A.israelii.fasta -------------GGAAUUAUUGGGCGUAAAGGGCUUGUAGGCGGC---- d.16.b.B.hyodysenteriae.fasta -------------GGAUUUACUGGGCGUAAAGGGUGAGUAGGCGGA---- d.16.b.G.subterranea.fasta -------------GGAAUCACUGGGCGUAAAGGGGGCGUAGGCGGU---- d.16.b.P.miotherma.fasta -------------GGAAUCACUGGGUGUAAAGGGGACGUAGGCGGA---- d.16.b.B.andersonii.fasta -------------GGAAUUACUGGGCGUAAAGGGCGUGUAGGCGGU---- d.16.b.H.aurantiacus.fasta -------------GGAAUUACUGGGCGUAAAGCGUGNNUAGGCNGU---- d.16.b.Leptospirillium.sp.fast -------------GGAAUUACUGGGCGUAAAGAGUCUGUAGGUGGU---- d.16.b.A.aeolicus.fasta -------------GAAGUCACUGGGCGUAAAGCGUCCGCAGCCGGU---- d.16.b.A.pyrophilus.fasta -------------GAAGUCACUGGGCGUAAAGCGUCCGCAGCCGGU---- d.16.b.T.maritima.fasta -------------GGAUUUACUGGGCGUAAAGGGGGCGUAGGCGGC---- d.16.b.T.maritima.GEN.fasta -------------GGAUUUACUGGGCGUAAAGGGGGCGUAGGCGGC---- n.16.b.T.thermophilus.2.num.fa -------------GGAUUCACUGGGCGUAAAGGGCGUGUAGGCGGC---- s.16.b.T.thermophilus.2.schem. -------------GGAUUCACUGGGCGUAAAGGGCGUGUAGGCGGC---- d.16.b.T.thermophilus.2.fasta -------------GGAUUCACUGGGCGUAAAGGGCGUGUAGGCGGC---- s.16.b.T.thermophilus.1.schem. -------------GGAUUCACUGGGCGUAAAGGGCGUGUAGGCGGC---- n.16.b.T.thermophilus.1.num.fa -------------GGAUUCACUGGGCGUAAAGGGCGUGUAGGCGGC---- d.16.b.T.thermophilus.1.fasta -------------GGAUUCACUGGGCGUAAAGGGCGUGUAGGCGGC---- d.16.b.T.aquaticus.fasta -------------GGAUUUACUGGGCGUAAAGGGCGUGUAGGCGGC---- d.16.b.T.roseum.fasta -------------GGAGUCACUGGGCGUAAAGGGCGUGUAGGCGGC---- d.16.b.P.marina.fasta -------------GGAAUUACUGGGCUUAAAGGGUGCGUAGGCGGC---- d.16.b.P.staleyi.fasta -------------GGAUUUACUGGGCUUAAAGAGUUCGUAGGCGGU---- d.16.b.P.Schlesner.fasta -------------GGAAUUACUGGGCUUAAAGGGUGCGUAGGCGGC---- d.16.b.G.obscuriglobus.1.fasta -------------GGAAUCACUGGGCUUAAAGGGCGCGUAGGCGGG---- d.16.b.I.pallida.fasta -------------GGAAUCACUGGGCUUAAAGGGCGCGUAGGCGGA---- d.16.a.P.abyssi.fasta -------------ACUAUUAUUGGGCCUAAAGCGGCCGUAGCCGGG---- d.16.a.P.horikoshii.fasta -------------ACUAUUAUUGGGCCUAAAGCGGCCGUAGCCGGG---- d.16.a.P.furiosus.fasta -------------ACUAUUAUUGGGCCUAAAGCGGCCGUAGCCGGG---- d.16.a.T.celer.fasta -------------GCUAUUAUUGGGCCUAAAGCGUCCGUAGCCGGG---- d.16.a.A.fulgidus.fasta -------------ACUUUUAUUGGGCCUAAAGCGUCCGUAGCCGGG---- d.16.a.N.equitans.fasta -------------GUGAUUAUUGGGCCUAAAGGGGCCGUAGCCGGG---- d.16.a.A.pernix.K1.fasta -------------GUGCUUACUGGGCCUAAAGCGCCCGUAGCCGGC---- d.16.a.P.occultum.fasta -------------AUGAUUACUGGGCCUAAAGCGCCCGUAGCCGGC---- d.16.a.T.tenax.fasta -------------GUGAUUACUGGGCUUAAAGCGCCCGUAGCCGGC---- d.16.a.S.acidocaldarius.fasta -------------GUGAUUACUGGGCCUAAAGCGCCUGUAGCCGGC---- d.16.a.S.solfataricus.fasta -------------GUGAUUACUGGGCCUAAAGCGCCUGUAGCCGGC---- d.16.a.S.solfataricus.2.fasta -------------ACUCUUACUGGGCCUAAAGCGCCCGUAGCCGGC---- d.16.a.M.thermautotrophicus.1. -------------GCUUUUAUUGGGCCUAAAGCGUCCGUAGCCGGU---- d.16.a.M.thermautotrophicus.2. -------------GCUUUUAUUGGGCCUAAAGCGUCCGUAGCCGGU---- d.16.a.M.formicicum.fasta -------------GUUUUUAUUGGGCCUAAAGCGUUCGUAGCCGGC---- d.16.a.M.vannielii.fasta -------------ACUCUUAUUGGGCCUAAAGCGUCCGUAGCCGGU---- d.16.a.H.marismortui.rrnA.fast -------------GAUAUUAUUGGGCCUAAAGCGUCCGUAGCCGGC---- d.16.a.H.marismortui.rrnB.fast -------------GAUAUUAUUGGGCCUAAAGCGUCCGUAGCUUGC---- d.16.a.Halobacterium.sp.fasta -------------GAUCUUAUUGGGCCUAAAGCGUCCGUAGCUGGC---- d.16.a.N.bangense.fasta -------------GCUAUUAUUGGGCCUAAAGCGUCCGUAGCUGGC---- d.16.a.N.innermongoliae.fasta -------------GCUGUUAUUGGGCCUAAAGCGUCCGUAGCUGGC---- d.16.a.H.volcanii.fasta -------------GAUAUUAUUGGGCCUAAAGCGUCCGUAGCCGGC---- d.16.a.M.hungatei.fasta -------------GCUAUUACUGGGCUUAAAGGGUCCGUAGCUGGA---- d.16.a.P.torridus.fasta -------------ACUUUUACUGAGCCUAAAGCGUUCGUAGCCGGC---- d.16.a.T.acidophilum.fasta -------------ACUUUUAUUGAGUCUAAAGCGUUCGUAACCGGU---- a.16.e.G.ardeae.fasta -------------------------------------------------- d.16.e.G.intestinalis.fasta -------------------------------------------------- a.16.e.G.muris.fasta -------------------------------------------------- d.16.e.A.bracteata.fasta -------------------------------------------------- d.16.e.Glomus.sp.W3349.fasta -------------------------------------------------- d.16.e.S.cerradensis.fasta -------------------------------------------------- a.16.e.G.intraradices.fasta -------------------------------------------------- d.16.e.S.culisetae.fasta -------------------------------------------------- a.16.e.P.balamuthi.fasta UGGUUAUAUUAUGAGUUUGUAUGAAUGAUUAUGAUURCUCUURUAGUCGA d.16.e.A.flavus.fasta -------------------------------------------------- d.16.e.T.caries.fasta -------------------------------------------------- d.16.e.M.circinelloides.fasta -------------------------------------------------- d.16.e.M.racemosus.fasta -------------------------------------------------- d.16.e.R.oryzae.fasta -------------------------------------------------- a.16.e.M.edulis.fasta --------AUAUC--GCCUGAAUAAUGG-UGCAUGGAAUAAUGGAAUAGG a.16.e.P.magellanicus.fasta --------AU-UC--GCCUGAAUAAUGG-UGCAUGGAAUAAUGGAAUAGG b.16.e.E.granulosus.fasta --------AUGUU--GCCUGUAAAGUUU-UGCAUGGAAUAAUGGAGGAGG d.16.e.D.melanogaster.fasta --------CAAAU--GCCUGAAUAUUCUGUGCAUGGGAUAAUGAAAUAAG b.16.e.C.koreana.fasta --------CUACA--GCCUGAACA-UUAGUGCAUGGAAUAAUAGAAUAGG b.16.e.A.australis.fasta --------GUACC--GCCUGAAUAAUGG-UGCAUGGAAUAAUGGAAUAAG b.16.e.O.utahensis.fasta --------UCUUUAGGCCUGAAUACUGUGUGCAUGGAAUAAUGGAAUAGG b.16.e.A.salina.fasta --------GCACCGCGCCUGAAUA-UCACAGCAUGGAAUGAUGGAAUAGG d.16.e.M.musculus.fasta --------GAGCC--GCCUGGAUACCGC-AGCUAGGAAUAAUGGAAUAGG d.16.e.R.norvegicus.fasta --------GAGCC--GCCUGGAUACCGC-AGCUAGGAAUAAUGGAAUAGG d.16.e.H.sapiens.fasta --------GAGCC--GCCUGGAUACCGC-AGCUAGGAAUAAUGGAAUAGG d.16.e.O.cuniculus.fasta --------GAGCC--GCCUGGAUACCGC-AGCUAGGAAUAAUGGAAUAGG d.16.e.X.borealis.fasta --------GCGUC--GCCUGGAUACUUC-AGCUAGGAAUAAUGGAAUAGG d.16.e.X.laevis.fasta --------GCGUC--GCCUGGAUACUUC-AGCUAGGAAUAAUGGAAUAGG d.16.e.A.castellanii.fasta --------CAGUUGGUUUUGG----------------------------- d.16.e.B.mandrillaris.fasta ----------GUUGGUUU-------------------------------- d.16.e.P.falciparum.A.fasta --------UUUUUCUUAUU------------------------------- d.16.e.P.falciparum.S.fasta --------UUAUUUUUUUUGA----------------------------- d.16.e.P.vivax.A.fasta --------UUUUUCUUAUUU------------------------------ d.16.e.P.vivax.O.fasta --------UUUUUCUUAUUU------------------------------ d.16.e.P.vivax.S.fasta --------UUUUUUUUAUUU------------------------------ d.16.e.E.histolytica.fasta --------UAAGACAUUUCG------------------------------ d.16.e.I.hoferi.fasta --------UUGUUGGUUUCU------------------------------ d.16.e.Dermocystidium.sp.fasta --------UUGUUGGUUUCU------------------------------ d.16.e.S.destruens.fasta --------UUGUUGGUUUCU------------------------------ d.16.e.A.unguiculata.fasta --------UUGUUGGUUUCU------------------------------ d.16.e.D.grandis.fasta --------UUGUUGGUUUCU------------------------------ d.16.e.A.macrogynus.fasta --------UUGUUGGUUUCU------------------------------ d.16.e.B.emersonii.fasta --------UUGUUGGUUUCU------------------------------ d.16.e.C.albicans.fasta -------------------------------------------------- d.16.e.S.cerevisiae.fasta -------------------------------------------------- d.16.e.N.crassa.fasta -------------------------------------------------- d.16.e.P.anserina.fasta -------------------------------------------------- d.16.e.C.immitis.fasta -------------------------------------------------- d.16.e.L.major.fasta ---------GUCCGGUG-------CGAGCUCCGGUU-------------C d.16.e.T.cruzi.fasta --------UGUUUGGUGUUGUUGGCAGACUUCGGUCUUGCCUUCACACAC d.16.e.T.brucei.fasta -----------UUCGUG--------AUGUUU---UU-------------- d.16.e.P.carinii.fasta -------------------------------------------------- d.16.e.C.neoformans.fasta --------UUGUUGGUUUCU------------------------------ d.16.e.Fungus.sp.QPX.fasta --------UUGUUGGUUUCU------------------------------ d.16.e.U.maydis.fasta --------UUGUUGGUUUCU------------------------------ d.16.e.M.leidyi.fasta --------UUGUUGGUUUCC------------------------------ d.16.e.T.cystophora.fasta --------UUGUUGGUUUCC------------------------------ d.16.e.M.prolifera.fasta --------UUGUUGGUUUCU------------------------------ d.16.e.P.haeckeli.fasta --------UCGUUGGUUUAU------------------------------ d.16.e.E.rotunda.fasta --------UUGUUGGUUUCU------------------------------ d.16.e.P.chromatophora.fasta --------UUGUUGGUUUCU------------------------------ d.16.e.A.majus.fasta --------ACGUUGGCCUUC------------------------------ d.16.e.S.indicum.fasta --------ACGUUGGCCUUC------------------------------ d.16.e.D.grandiflora.fasta --------ACGUUGGCCUUC------------------------------ d.16.e.Pla.lanceolata.fasta --------ACGUUGGCCUUC------------------------------ d.16.e.N.tabacum.fasta --------ACGUUGGCCUUC------------------------------ d.16.e.A.thaliana.fasta --------GUGUUGGCCUUC------------------------------ d.16.e.S.alba.fasta --------GUGUUGGCCUUC------------------------------ d.16.e.S.tuberosum.fasta --------ACGUUGGCCUUC------------------------------ d.16.e.F.x.ananassa.fasta --------CUGUUGGCCUUC------------------------------ d.16.e.G.max.fasta --------GUGUUGGCCUUC------------------------------ d.16.e.O.sativa.fasta --------GUGUUGGCCUUC------------------------------ d.16.e.Z.mays.fasta --------GUGUUGGCCUUC------------------------------ d.16.e.A.verticilliflorum.fast --------UGGUUGGCCUUC------------------------------ d.16.e.G.spirotaenia.fasta --------GUGUUGGUCUUC------------------------------ d.16.e.Staurastrum.sp.M752.fas --------GUGUUGGUCUUC------------------------------ d.16.e.C.paradoxa.fasta --------UUGUUGGUUUCU------------------------------ d.16.e.G.nostochinearum.fasta --------UUGUUGGUUUCU------------------------------ d.16.e.G.wittrockiana.fasta --------UUGUUGGUUUGU------------------------------ d.16.e.C.luteoviridis.fasta --------CUGUCGGUCUGU------------------------------ d.16.e.O.longa.fasta --------UUGUUGGUUUGA------------------------------ d.16.e.P.weissei.fasta --------UUGUUGGUUUGA------------------------------ d.16.e.C.citrina.fasta --------UUGUUGGUUUGA------------------------------ d.16.e.G.steinii.fasta --------UUGUUGGUUUGA------------------------------ d.16.e.Ple.lanceolata.fasta --------UUGUUGGUUUGA------------------------------ d.16.e.O.quadricornutus.fasta --------UUGUUGGUUUGA------------------------------ d.16.e.S.lemnae.fasta --------UUGUUGGUUUGA------------------------------ d.16.e.S.mytilus.fasta --------UUGUUGGUUUGA------------------------------ d.16.e.E.mobilis.fasta --------UUGUUGGUUUGA------------------------------ d.16.e.O.granulifera.1.fasta --------UUGUUGGUUCGA------------------------------ d.16.e.O.granulifera.2.fasta --------UUGUUGGUUUGA------------------------------ d.16.e.U.gallina.fasta --------UUGUUGGUUUGA------------------------------ d.16.e.U.pisces.fasta --------UUGUUGGUUUGA------------------------------ d.16.e.P.lepisma.fasta --------UUGUUGGUUUGA------------------------------ d.16.e.U.grandis.fasta --------UUGUUGGUUUGA------------------------------ d.16.e.B.coli.fasta --------UGGUUAAUUCUA------------------------------ d.16.e.E.aediculatus.fasta --------UUGUUGGUUUGA------------------------------ d.16.e.T.thermophila.fasta --------UUAUUGGUUCUU------------------------------ d.16.e.Bangia.sp.NWT.fasta --------UUGUUGGUUUCC------------------------------ d.16.e.Bangia.sp.VIS7.fasta --------UUGUUGGUUUCC------------------------------ d.16.e.E.carnea.fasta --------UUGUUGGUUUCU------------------------------ d.16.e.R.parvula.fasta --------UUGUUGGUUUCU------------------------------ d.16.e.C.coeruleus.fasta --------UUGUUGGUUUUC------------------------------ d.16.e.P.aerugineum.1.fasta --------UCGUUGGUUGAU------------------------------ d.16.e.R.maculata.fasta --------UUGUUGGUUUG------------------------------- d.16.e.A.ambigua.fasta --------UCGUUGGUUUGC------------------------------ d.16.e.A.baicalensis.fasta --------UUGUUGGUUUGC------------------------------ d.16.e.S.nipponica.fasta --------UUGUUGGUUUGC------------------------------ d.16.e.C.radiatus.fasta --------UGGUUGGUUUGU------------------------------ d.16.e.C.criophilum.fasta --------UUGUUGGUUUGU------------------------------ d.16.e.A.capitellata.fasta --------UUGUUGGUUUGC------------------------------ d.16.e.S.pupula.fasta --------UUGUUGGUUUGC------------------------------ d.16.e.T.antarctica.fasta --------UUGUUGGUUUGC------------------------------ d.16.e.E.triangulatum.fasta --------UUGUUGGUUUGU------------------------------ d.16.e.A.bongranii.fasta --------UUGUUGGUUUGC------------------------------ d.16.e.Pseudogomphonema.sp.fas --------UUGUUGGUUUGC------------------------------ d.16.e.D.tenue.fasta --------UUGUUGGUUUGC------------------------------ d.16.e.G.marina.fasta --------UUGUUGGUUUGC------------------------------ d.16.e.Thalassionema.sp.fasta --------UUGUUGGUUUGU------------------------------ d.16.e.R.belgicae.fasta --------UUGUUGGUUUGC------------------------------ d.16.e.Undatella.sp.fasta --------UUGUUGGUUUGC------------------------------ d.16.e.C.belgica.fasta --------UUGUUGGUUUGC------------------------------ d.16.e.O.sinensis.fasta --------UUGUUGGUUUGC------------------------------ d.16.e.D.brightwellii.fasta --------UUGUUGGUUUGU------------------------------ d.16.e.L.undulatum.fasta --------UUGUUGGUUUGU------------------------------ d.16.e.T.eccentrica.fasta --------UUGUUGGUUUGC------------------------------ d.16.e.T.pseudonana.fasta --------UUGUUGGUUUGC------------------------------ d.16.e.S.costatum.fasta --------UUGUUGGUUUGC------------------------------ d.16.e.P.laevis.fasta --------UUGUUGGUUUGU------------------------------ d.16.e.L.borealis.fasta --------UUGUUGGUUAG------------------------------- d.16.e.P.pseudodenticulata.fas --------UUGUUGGUUAG------------------------------- d.16.e.B.mediterranea.fasta --------UUGUUGGUUUGC------------------------------ d.16.e.B.pacifica.fasta --------UUGUUGGUUUGC------------------------------ d.16.e.L.minuta.fasta --------UUGUUGGUUUGC------------------------------ d.16.e.L.danicus.fasta --------UUGUUGGUUUGU------------------------------ d.16.e.Chaetoceros.sp.fasta --------UUGUUGGUUUGA------------------------------ d.16.e.A.invadans.fasta --------UUGUUGGUUUGC------------------------------ d.16.e.L.giganteum.fasta --------UUGUUGGUUUGC------------------------------ d.16.e.M.varians.fasta --------UUGUUGGUCUAA------------------------------ d.16.e.B.hominis.fasta --------UGAUUGGUUUGU------------------------------ d.16.e.P.marinus.fasta --------UUGUUGGUUU-------------------------------- d.16.e.T.gondii.fasta --------UUGUUGGUUU-------------------------------- d.16.e.A.fundyense.fasta --------UUGUUGGUUU-------------------------------- d.16.e.B.bigemina.fasta --------UUGUUGGUUU-------------------------------- d.16.e.B.canis.fasta --------UUGUUGGUUU-------------------------------- d.16.e.Babesia.sp.OKD.fasta --------UUGUUGGUUU-------------------------------- d.16.e.B.microti.1.fasta --------UUGUUGGUUA-------------------------------- d.16.e.B.microti.2.fasta --------UUGUUGGUUA-------------------------------- d.16.e.B.microti.3.fasta --------UUGUUGGUUA-------------------------------- d.16.e.B.microti.4.fasta --------UUGUUGGUUA-------------------------------- d.16.e.B.microti.5.fasta --------UUGUUGGUUA-------------------------------- d.16.e.B.rodhaini.fasta --------UUGUUGGUUU-------------------------------- d.16.e.B.gibsoni.fasta --------UUGUUGGUUU-------------------------------- d.16.e.B.bovis.fasta --------CCGUUGGUU--------------------------------- d.16.e.J.libera.fasta --------UUGUUGGUGUGG------------------------------ d.16.e.R.americana.fasta --------UUGUUGGUGGAG------------------------------ d.16.e.B.ostreae.fasta --------UUGUCGGUUUUG------------------------------ d.16.e.A.dasyae.fasta --------UUGUUGGU-UUGU----------------------------- d.16.e.A.hermannii.fasta --------UUGUUGGU-UUGU----------------------------- d.16.e.N.helminthoides.fasta --------UUGUUGGU-UUGU----------------------------- d.16.e.B.gelatinosum.fasta --------UUGUUGGU-UUGU----------------------------- d.16.e.N.tortuosa.fasta --------UUGUUGGU-UUGU----------------------------- d.16.e.T.hispida.fasta --------UUGUUGGU-UUGU----------------------------- d.16.e.T.violacea.4.fasta --------UUGUUGGU-UUGU----------------------------- d.16.e.T.violacea.1.fasta --------UUGUUGGU-UUGU----------------------------- d.16.e.T.violacea.2.fasta --------UUGUUGGU-UUGU----------------------------- d.16.e.N.shawii.fasta --------UUGUUGGU-UUGU----------------------------- d.16.e.B.investiens.fasta --------UUGUUGGU-UUGU----------------------------- d.16.e.B.macrosporum.fasta --------UUGUUGGU-UUGU----------------------------- d.16.e.A.plicata.fasta --------UUGUUGGU-UUGU----------------------------- d.16.e.C.officinalis.fasta --------UUGUUGGU-UUGU----------------------------- d.16.e.R.carriebowensis.fasta --------UUGUUGGUGUUGU----------------------------- d.16.e.B.hamifera.fasta --------UUGUUGGU-UUGU----------------------------- d.16.e.G.vagum.fasta --------UUGUUGGU-UUGU----------------------------- d.16.e.C.crispus.fasta --------UUGUUGGU-UUGU----------------------------- d.16.e.H.plana.fasta --------UUGUUGGU-UUGU----------------------------- d.16.e.R.leptophylla.fasta --------UUGUUGGU-UUGU----------------------------- d.16.e.P.pulvinata.fasta --------UUGUUGGU-UUGU----------------------------- d.16.e.C.rubrum.fasta --------UUGUUGGU-UUGU----------------------------- d.16.e.Gracilariopsis.sp.fasta --------UUGUUGGU-UUGU----------------------------- d.16.e.B.moritziana.fasta --------UUAUUGGU-UUGU----------------------------- d.16.e.H.rubra.fasta --------UUGUUGGU-UUCG----------------------------- d.16.e.D.grisea.fasta --------UUGUUGGU--UUA----------------------------- d.16.e.N.fowleri.fasta -----------UCGGUCUGAC----------------------------- d.16.e.N.gruberi.fasta -----------UCGGUGUGGC----------------------------- a.16.e.Hexamita.sp.fasta -------CCCGGCG------------------------------------ d.16.e.T.foetus.fasta -------UAUGAUAUCUU-------------------------------- d.16.e.A.khaliulini.fasta -------------------------------------------------- d.16.e.E.aedis.fasta -------------------------------------------------- d.16.e.A.connecticus.fasta -------------------------------------------------- d.16.e.I.barri.fasta -------------------------------------------------- d.16.e.A.ferocious.fasta -------------------------------------------------- d.16.e.Amblyospora.sp.fasta -------------------------------------------------- d.16.e.C.lunata.fasta -------------------------------------------------- d.16.e.P.anophelis.fasta -------------------------------------------------- d.16.e.Hazardia.sp.fasta -------------------------------------------------- d.16.e.H.milleri.fasta -------------------------------------------------- d.16.e.P.simulii.fasta -------------------------------------------------- d.16.e.W.palustris.fasta -------------------------------------------------- d.16.e.Nosema.sp.03.fasta -------------------------------------------------- d.16.e.Nosema.sp.05.fasta -------------------------------------------------- d.16.e.Endoreticulatus.sp.fast -------------------------------------------------- d.16.e.Nosema.sp.02.fasta -------------------------------------------------- d.16.e.N.spodopterae.fasta -------------------------------------------------- d.16.e.N.trichoplusiae.fasta -------------------------------------------------- d.16.e.N.bombycis.27.fasta -------------------------------------------------- d.16.e.N.bombycis.02.fasta -------------------------------------------------- d.16.e.V.imperfecta.fasta -------------------------------------------------- d.16.e.N.furnacalis.fasta -------------------------------------------------- d.16.e.Microsporidium57864.fas -------------------------------------------------- d.16.e.Vairimorpha.sp.C21.fast -------------------------------------------------- d.16.e.N.oulemae.fasta -------------------------------------------------- d.16.e.N.necatrix.fasta -------------------------------------------------- d.16.e.V.necatrix.fasta -------------------------------------------------- d.16.e.N.apis.fasta -------------------------------------------------- d.16.e.O.occidentalis.fasta -------------------------------------------------- d.16.e.Microsporidium.sp.DP119 -------------------------------------------------- d.16.e.V.corneae.fasta -------------------------------------------------- d.16.e.A.michaelis.fasta -------------------------------------------------- d.16.e.T.contejeani.fasta -------------------------------------------------- d.16.e.E.hellem.fasta -------------------------------------------------- d.16.e.Encephalitozoon.sp.fast -------------------------------------------------- d.16.e.E.cuniculi.fasta -------------------------------------------------- d.16.e.O.colligata.fasta -------------------------------------------------- d.16.e.E.salmonis.fasta -------------------------------------------------- d.16.e.N.salmonis.fasta -------------------------------------------------- d.16.e.Enterocytozoonidae.sp.f -------------------------------------------------- d.16.e.E.bieneusi.fasta -------------------------------------------------- d.16.e.B.algerae.fasta -------------------------------------------------- d.16.e.T.solenopsae.fasta -------------------------------------------------- d.16.e.V.acridophagus.fasta -------------------------------------------------- d.16.e.Bacillidium.sp.fasta -------------------------------------------------- d.16.e.P.cristatellae.fasta -------------------------------------------------- d.16.e.Pleistophora.sp.fasta -------------------------------------------------- d.16.e.O.operophterae.fasta -------------------------------------------------- d.16.e.F.magnivora.fasta -------------------------------------------------- d.16.e.G.atherinae.fasta -------------------------------------------------- d.16.e.Ichthyosporidium.sp.fas -------------------------------------------------- d.16.e.L.acerinae.fasta -------------------------------------------------- d.16.e.H.anguillarum.fasta -------------------------------------------------- d.16.e.P.mirandellae.fasta -------------------------------------------------- d.16.e.T.hominis.fasta -------------------------------------------------- d.16.e.V.culicis.fasta -------------------------------------------------- d.16.e.P.hippoglossoideos.fast -------------------------------------------------- d.16.e.Microgemma.sp.fasta -------------------------------------------------- d.16.e.S.lophii.fasta -------------------------------------------------- d.16.e.Pleistophora.sp.LS.fast -------------------------------------------------- d.16.e.D.gammarellum.fasta -------------------------------------------------- d.16.e.M.prosopium.fasta -------------------------------------------------- d.16.e.A.scoticae.fasta -------------------------------------------------- d.16.e.P.whitei.fasta -------------------------------------------------- a.16.c.C.coccineum.fasta ---------------------------UUUUUAAGUCCGUC-------GU a.16.c.C.ruber.fasta ---------------------------UUUUUAAGUCUGCC-------AU d.16.c.N.tabacum.fasta ---------------------------UUUUUAAGUCCGCC-------GU d.16.c.S.oleracea.fasta ---------------------------UUUUUAAGUCCGCC-------GU d.16.c.Z.mays.fasta ---------------------------UUUUCAAGUCCGCC-------GU d.16.c.M.polymorpha.fasta ---------------------------UUUUUAAGUCCGCC-------GU d.16.c.R.communis.fasta ---------------------------UUUUUAAGUCCGCC-------GU d.16.c.C.vulgaris.fasta ---------------------------UUAAAAAGUCUCCU-------GU d.16.c.P.wickerhamii.fasta ---------------------------UUAAAAAGUAUUCU-------GU d.16.c.P.minor.fasta ---------------------------UUUCCAAGUCUUUU-------GU d.16.c.N.olivacea.fasta ---------------------------UCCGAAAGUCCGCU-------GU d.16.c.P.parkeae.fasta ---------------------------UUCGUAAGUCCGCU-------GU d.16.c.C.reinhardtii.fasta ---------------------------UCGUAAAGUCUAAU-------GU b.16.m.A.castellanii.fasta ------------------------------UUAAACAUAAA--------G d.16.c.P.thurberi.fasta ---------------------------UCCUUAAUUAUAAA--------U b.16.m.C.crispus.fasta ------------------------------UUAAAGUUUAU--------U d.16.c.T.gondii.fasta ------------------------------CUAUUUGAUAA--------A b.16.m.N.crassa.fasta --------------------------AGUGUUAAUCAUCAUAAAUA--GG b.16.m.P.anserina.fasta --------------------------AGUGUUAUUCAUCUUAAAUA--GG b.16.m.P.chrysogenum.fasta --------------------------AGUGUUAGUUAUCUUUAUUG--GG b.16.m.E.nidulans.fasta --------------------------AGUGUUAAUCAUCUUUAUUA--GG b.16.m.S.cerevisiae.fasta --------------------------AGCGUUAAUCAUAAU-------GG b.16.m.W.saturnus.m.fasta --------------------------AGUAUUAGUUAUAUU-------GG b.16.m.P.minor.fasta --------------------------GGUUUUGUUUAUUUU-------UU d.16.c.P.falciparum.fasta ----------------------------UUUUAUGUUUAAA-------UA d.16.c.B.bovis.fasta ---------------------------AUUUUAAAAAUUUA-------AA b.16.m.T.pyriformis.fasta ---------------------------GUUAUAAUUACUAC-------UU d.16.m.S.sinuspaulianus.fasta ---------------------------GCUUUGAAAG---U-------CU b.16.m.P.tetraurelia.fasta ---------------------------GUCAUAACAAU------------ b.16.m.D.discoideum.fasta --------------------------GUUCUCAAAGGUAUU--------A d.16.m.P.polycephalum.fasta --------------------------AAUUGAAAAUACA----------G b.16.m.P.littoralis.fasta --------------------------UUCUGUAAAGUUAUUU------GU b.16.m.P.wickerhamii.fasta --------------------------AGUUUUAUAAAAAUUAAUAA--UU d.16.c.H.africana.fasta ------------------------------UUAAAUCUCAG-------AG d.16.c.C.fragile.fasta ---------------------------UUUUUAAGUCUACUGUUAA--AU d.16.c.C.sertularioides.fasta ---------------------------UUUUGAAGUCUACUGUGAA--AG d.16.c.C.humicola.fasta ---------------------------CCGAAAAGUCUAAU-------GU d.16.c.P.uvella.fasta ---------------------------UACACAAGUUUAAU-------GU a.16.c.G.nostochinearum.fasta ---------------------------UUAAUAAGUCUGUU-------GU a.16.c.G.wittrockiana.fasta ---------------------------UUAACAAGUCUGUU-------GU d.16.c.C.paradoxa.fasta ---------------------------UAAGCAAGUCUGUU-------GU d.16.y.C.paradoxa.fasta ---------------------------UAAGCAAGUCUGUU-------GU d.16.c.Cryptomonas.sp.fasta ---------------------------UUAGUAAGUCUGCU-------GU d.16.c.P.palmata.fasta ---------------------------UUAUAAAGUCCGCU-------GU d.16.c.H.akashiwo.fasta ---------------------------UUAAUGUGUCUGUU-------GU d.16.c.S.pseudocostatum.fasta ---------------------------UUAAUAAGUCAACU-------GU d.16.c.P.littoralis.fasta ---------------------------UUAGUAAGUCUAUU-------GU d.16.c.C.caldarium.fasta ---------------------------UUAUCAAGUCUGCU-------GU a.16.c.E.huxleyi.fasta ---------------------------UUAGUAAGUCUGUU-------GU d.16.c.E.gracilis.fasta ---------------------------CAAGUGUGUUUAAU-------GU d.16.b.Anabaena.sp.fasta ---------------------------ACUGUAAGUCUGCU-------GU d.16.b.Chlorogloeopsis.PCC7518 ---------------------------GAUGUAUGUCUAUU-------GU d.16.b.Synechococcus.sp.fasta ---------------------------UAAUCAAGUCUGUU-------GU d.16.b.Synechocystis.PCC6803.G ---------------------------UAUGCAAGUCUGCC-------GU d.16.b.O.agardhii.fasta ---------------------------CAUCCAAGUCUGCU-------GU d.16.b.Pleurocapsa.7516.fasta ---------------------------UCAUCAAGUCUGCU-------GU d.16.b.M.aeruginosa.fasta ---------------------------CAGCCAAGUCUGCC-------GU b.16.m.C.reinhardtii.fasta -------------------------------------------------- d.16.m.C.eugametos.fasta -------------------------------------------------- b.16.m.M.senile.fasta -------------------------------------------------- d.16.b.S.pneumoniae.fasta ---------------------------UAGAUAAGUCUGAA-------GU d.16.b.S.pyogenes.fasta ---------------------------NNUUUAAGUCUNAA-------GU d.16.b.B.anthracis.fasta ---------------------------UUCUUAAGUCUNAU-------GU d.16.b.B.cereus.1.fasta ---------------------------UUCUUAAGUCUGAU-------GU d.16.b.E.faecalis.fasta ---------------------------UUCUUAAGUCUGAU-------GU d.16.b.E.faecium2.fasta ---------------------------UUCUUAAGUCUGAU-------GU d.16.b.L.monocytogenes.fasta ---------------------------CUUUUAAGUCUGAU-------GU d.16.b.B.subtilis.fasta ---------------------------UUCUUAAGUCUGAU-------GU d.16.b.B.subtilis.GEN.fasta ---------------------------UUCUUAAGUCUGAU-------GU d.16.b.B.halodurans.fasta ---------------------------CUCUUAAGUCUGAU-------GU d.16.b.S.aureus.fasta ---------------------------UUUUUAAGUCUGAU-------GU d.16.b.S.aureus.GEN.fasta ---------------------------UUUUUAAGUCUGAU-------GU d.16.b.L.lactis.GEN.fasta ---------------------------UUAUUAAGUCUGGU-------GU d.16.b.S.pyogenes.GEN.fasta ---------------------------UUUUUAAGUCUGAA-------GU d.16.b.L.acidophilus.fasta ---------------------------AGAAUAAGUCUGAU-------GU d.16.b.M.capricolum.fasta ---------------------------UUUGCAAGUUUGAG-------GU d.16.b.M.mycoides.fasta ---------------------------UUUGCAAGUUUGAG-------GU d.16.b.E.rhusiopathiae.fasta ---------------------------UUAUCAAGUUUAUG-------GU d.16.b.C.innocuum.fasta ---------------------------GUACUAAGUCUGUA-------GU d.16.b.M.genitalium.fasta ---------------------------UUGAAAAGUCUGGU-------GU d.16.b.M.pneumoniae.GEN.fasta ---------------------------UUGAAAAGUCUGGU-------GU d.16.b.M.pneumoniae.fasta ---------------------------UUGAAAAGUCUGGU-------GU d.16.b.M.gallisepticum.fasta ---------------------------UUAGAAAGUCUGGU-------GU d.16.b.U.urealyticum.fasta ---------------------------CUUGUAAGUUUGGU-------AU d.16.b.U.urealyticum.GEN.fasta ---------------------------UUUGUAAGUUUGGU-------AU d.16.b.M.hyopneumoniae.fasta ---------------------------UUGUUAAGUUUAAA-------GU d.16.b.F.necrophorum.fasta ---------------------------AAGGAAAGUCUGAU-------GU d.16.b.F.nucleatum.fasta ---------------------------UAUGUAAGUCUGAU-------GU d.16.b.S.moniliformis.fasta ---------------------------CUAACAAGUUGAAG-------GU d.16.b.C.botulinum.F.fasta ---------------------------UGUUUAAGUGGGAU-------GU d.16.b.C.tetani.fasta ---------------------------UGCUUAAGUGAGAU-------GU d.16.b.C.perfringens.fasta ---------------------------UGAUUAAGUGGGAU-------GU d.16.b.C.difficile.fasta ---------------------------CUUUCAAGUCAGGA-------GU d.16.b.E.brachy.fasta ---------------------------CUUUUAAGCGUAGG-------GU d.16.b.Epulopiscium.sp.fasta ---------------------------AUGGUAAGUCAGUU-------GU d.16.b.H.chlorum.fasta ---------------------------CAUGUAAGUCUGAG-------GU b.16.m.G.max.fasta ---------------------------GAAUCGGGUUGAAA-------GU b.16.m.O.berteriana.fasta ---------------------------GAAUCGGGUUGAAA-------GU b.16.m.S.cereale.fasta ---------------------------GAAUCGGGUUGAAA-------GU b.16.m.T.aestivum.fasta ---------------------------GAAUCGGGUUGAAA-------GU d.16.m.Z.mays.fasta ---------------------------GAAUCGGGUUGAAA-------GU b.16.m.M.polymorpha.fasta ---------------------------GAAUCCAGUUGAAA-------GU b.16.m.N.olivacea.fasta ---------------------------UAAUUACGUUGGAA-------GC d.16.b.G.liquefaciens.fasta ---------------------------AUGGACAGUCAGAU-------GU d.16.b.B.japonicum.fasta ---------------------------UCUUUAAGUCAGGG-------GU d.16.b.R.acidophilus.fasta ---------------------------UCUUUAAGUCAGGG-------GU d.16.b.A.caulinodans.fasta ---------------------------UCGUUAAGUCAAGG-------GG d.16.b.B.quintana.fasta ---------------------------UAUUUAAGUCAGAG-------GU d.16.b.M.loti.fasta ---------------------------UACUUAAGUCAGGG-------GU d.16.b.A.tumefaciens.fasta ---------------------------UAUUUAAGUCAGGG-------GU d.16.b.B.bacilliformis.fasta ---------------------------UAUUUAAGUCAGAG-------GU d.16.b.B.henselae.fasta ---------------------------UAUUUAAGUCAGAG-------GU d.16.b.B.melitensis.fasta ---------------------------CUUUUAAGUCAGGG-------GU d.16.b.R.orientis.fasta ---------------------------UUGUUAAGUCAGGG-------GU d.16.b.Methylobacterium.sp.fas ---------------------------GUUUUAAGUCGGGG-------GU d.16.b.R.bellii.fasta ---------------------------UUAGUAAGUUGGAA-------GU d.16.b.R.felis.URRWXCal2.fasta ---------------------------UUAGUAAGUUGGAA-------GU d.16.b.R.prowazekii.fasta ---------------------------UUAGUAAGUUGGAA-------GU d.16.b.R.prowazekii.GEN.fasta ---------------------------UUAGUAAGUUGGAA-------GU d.16.b.R.rickettsii.fasta ---------------------------UUAGUAAGUUGGAA-------GU d.16.b.A.calcoaceticus.fasta ---------------------------UUUUUAAGUCGGAU-------GU d.16.b.P.pacificensis.fasta ---------------------------UUGAUAAGUCAGAU-------GU d.16.b.C.marismortui.fasta ---------------------------UUGUCACGCCGGGU-------GU d.16.b.H.halodenitrificans.fas ---------------------------GUGAUCAGCCAGUU-------GU d.16.b.P.aeruginosa.fasta ---------------------------UCAGCAAGUUGGAU-------GU d.16.b.P.aeruginosa.GEN.fasta ---------------------------UCAGCAAGUUGGAU-------GU d.16.b.Pseudomonas.sp.fasta ---------------------------UUGGUAAGAUGGAU-------GU d.16.b.P.putida.fasta ---------------------------UUGUUAAGUUGGAU-------GU d.16.b.C.burnetii.fasta ---------------------------UAUUUAAGUCGGAU-------GU d.16.b.M.capsulatus.fasta ---------------------------UAGAUAAGUCAGAU-------GU d.16.b.L.pneumophila.1.fasta ---------------------------UGAUUAAGUUAUCU-------GU d.16.b.L.pneumophila.2.fasta ---------------------------UGAUUAAGUUAUCU-------GU d.16.b.A.vinosum.fasta ---------------------------ACGGUCAGUCUGCU-------GU d.16.b.Beggiatoa.sp.fasta ---------------------------UAAAUAAGUCAGAU-------GU d.16.b.A.hydrophila.fasta ---------------------------UGGAUAAGUUAGAU-------GU d.16.b.S.putrefaciens.fasta ---------------------------UUGUUAAGCGAGAU-------GU d.16.b.C.freundii.fasta ---------------------------CUGUCAAGUCGGAU-------GU d.16.b.S.dysenteriae.1.fasta ---------------------------UUGUUAAGUCAGAU-------GU d.16.b.K.pneumoniae.fasta ---------------------------CUGUCAAGUCGGAU-------GU d.16.b.P.shigelloides.fasta ---------------------------UUGUUAAGUCAGAU-------GU d.16.b.Y.pestis.fasta ---------------------------UUGUUAAGUCAGAU-------GU d.16.b.Y.pseudotuberculosis.fa ---------------------------UUGUUAAGUCAGAU-------GU d.16.b.S.dysenteriae.2.fasta ---------------------------UUGUUAAGUCAGAU-------GU d.16.b.E.coli.0157G.GEN.fasta ---------------------------UUGUUAAGUCAGAU-------GU d.16.b.E.coli.EDL.GEN.fasta ---------------------------UUGUUAAGUCAGAU-------GU d.16.b.E.coli.fasta ---------------------------UUGUUAAGUCAGAU-------GU d.16.b.E.coli.K12.GEN.fasta ---------------------------UUGUUAAGUCAGAU-------GU h.16.b.E.coli.hlxnum.fasta ---------------------------UUGUUAAGUCAGAU-------GU m.16.b.E.coli.mhg.fasta ---------------------------UUGUUAAGUCAGAU-------GU s.16.b.E.coli.schem.fasta ---------------------------UUGUUAAGUCAGAU-------GU d.16.b.S.typhimurium.fasta ---------------------------CUGUCAAGUCGGAU-------GU d.16.b.S.marcescens.fasta ---------------------------UUGUUAAGUCAGAU-------GU d.16.b.E.tarda.fasta ---------------------------UUGUUAAGUUGGAU-------GU d.16.b.P.vulgaris.fasta ---------------------------CAAUUAAGUCAGAU-------GU d.16.b.V.cholerae4.fasta ---------------------------UUGUUAAGUCAGAU-------GU d.16.b.V.cholerae5.fasta ---------------------------UUGUUAAGUCAGAU-------GU d.16.b.V.cholerae2.fasta ---------------------------UUGUUAAGUCAGAU-------GU d.16.b.V.cholerae6.fasta ---------------------------UUGUUAAGUCAGAU-------GU d.16.b.V.cholerae.fasta ---------------------------UUGUUAAGUCAGAU-------GU d.16.b.V.cholerae.GEN.fasta ---------------------------UUGUUAAGUCAGAU-------GU d.16.b.V.parahaemolyticus.fast ---------------------------UUGUUAAGUCAGAU-------GU d.16.b.H.influenzae7.fasta ---------------------------UAUUUAAGUGAGGU-------GU d.16.b.H.influenzae8.fasta ---------------------------UAUUUAAGUGAGGU-------GU d.16.b.H.influenzae6.fasta ---------------------------UAUUUAAGUGAGGU-------GU d.16.b.H.influenz.fasta ---------------------------UAUUUAAGUGAGGU-------GU d.16.b.H.influenzae.fasta ---------------------------UAUUUAAGUGAGGU-------GU d.16.b.P.multocida.fasta ---------------------------CUUUUAAGUGAGAU-------GU d.16.b.P.multocida.GEN.fasta ---------------------------CUUUUAAGUGAGAU-------GU d.16.b.X.albilineans.fasta ---------------------------UGUUUAAGUCCGUU-------GU d.16.b.X.campestris.fasta ---------------------------GGUUUAAGUCUGUU-------GU d.16.b.X.fastidiosa.GEN.fasta ---------------------------UAUUUAAGUCUGUU-------GU d.16.b.D.nodosus.fasta ---------------------------UUUAUAAGUCAGGU-------GU d.16.b.F.tularensis.fasta ---------------------------UUGUUAAGUCAGAU-------GU d.16.b.B.parapertussis.fasta ---------------------------UCGGAAAGAAAGAU-------GU d.16.b.B.pertussis.fasta ---------------------------UCGGAAAGAAAGAU-------GU d.16.b.B.bronchiseptica2.fasta ---------------------------UCGGAAAGAAAGAU-------GU d.16.b.u.proteobacterium.fasta ---------------------------UUUGCAAGACCGAU-------GU d.16.b.B.mallei.fasta ---------------------------UUGCUAAGACCGAU-------GU d.16.b.Burkholderia.sp.fasta ---------------------------UCGCUAAGACAGAU-------GU d.16.b.N.meningitidis.MD58.GEN ---------------------------UACUUAAGCAGGAU-------GU d.16.b.N.meningitidis.Z2491.GE ---------------------------UACUUAAGCAGGAU-------GU d.16.b.N.gonorrhoeae.fasta ---------------------------UACUUAAGCAGGAU-------GU d.16.b.C.testosteroni.fasta ---------------------------UUUGUAAGACAGUG-------GU d.16.b.D.desulfuricans.fasta ---------------------------AGUGUAAGUCAGGG-------GU d.16.b.M.xanthus.fasta ---------------------------GUGACAAGUCGGGU-------GU d.16.b.D.thermophilus.fasta ---------------------------GCGGUAAGUCUGGG-------GU d.16.b.B.burgdorferi.fasta ---------------------------UAUAUAAGUCUAUGC------AU d.16.b.B.burgdorferi.GEN.fasta ---------------------------UAUAUAAGUCUAUGC------AU d.16.b.B.hermsii.fasta ---------------------------UAUGCAAGUCUAUGC------GU d.16.b.S.aurantia.fasta ---------------------------UAUGCAAGUCUG-AU------GU d.16.b.T.pallidum.A.fasta ---------------------------CUGGUAAGCCUG-GU------GU d.16.b.L.illini.fasta ---------------------------CUGUUAAGUCGG-GA------GU d.16.b.L.interrogans.fasta ---------------------------CAUGUAAGUCAG-GU------GU d.16.b.C.trachomatis.GEN.fasta ---------------------------AAGGUAAGUUAG-UU------GU d.16.b.C.trachomatis.L2.fasta ---------------------------AAGGUAAGUUAG-UU------GU d.16.b.C.muridarum.fasta ---------------------------AAGGUAAGUUAG-UU------GU d.16.b.C.pneumoniae.AR39.fasta ---------------------------AAGGAAAGUUAG-AU------GU d.16.b.C.pneumoniae.fasta ---------------------------AAGGAAAGUUAG-AU------GU d.16.b.C.pneumoniae.J138.fasta ---------------------------AAGGAAAGUUAG-AU------GU d.16.b.C.pneumoniae.CWL029.fas ---------------------------AAGGAAAGUUAG-AU------GU d.16.b.C.psittaci.fasta ---------------------------AAGGAAAGUUAG-AU------GU d.16.b.D.radiodurans.1.fasta ---------------------------UAUUUAAGUCUG-GU------UU d.16.b.D.radiodurans.GEN.fasta ---------------------------AAUUUAAGUCUG-GU------UU d.16.b.B.fragilis.fasta ---------------------------CUGGUAAGUCAG-UU------GU d.16.b.P.gingivalis.fasta ---------------------------UCGGUAAGUCAG-CG------GU d.16.b.C.vibrioforme.fasta ---------------------------AUAAUAAGUCGG-GG------GU d.16.b.C.jejuni.fasta ---------------------------UUAUCAAGUCUC-UU------GU d.16.b.C.jejuni.GEN.fasta ---------------------------UUAUCAAGUCUC-UU------GU d.16.b.C.sputorum.fasta ---------------------------UAGAUAAGUCUC-UU------GU d.16.b.H.pylori.26695.GEN.fast ---------------------------AUAGUCAGUCAG-GU------GU d.16.b.H.pylori.J99.GEN.fasta ---------------------------AUAGUCAGUCAG-GU------GU d.16.b.H.pylori2.fasta ---------------------------AUAGUCAGUCAG-GU------GU d.16.b.A.capsulatum.fasta ---------------------------UCGGUAAGUUU-GAU------GU d.16.b.H.foetida.fasta ---------------------------UCUUUAAGUGA-GAU------GU d.16.b.A.globiformis.fasta ---------------------------UUGUCGCGUCU-GCC------GU d.16.b.M.luteus.fasta ---------------------------UUGUUGCGUCU-GUC------GU d.16.b.Frankia.sp.fasta ---------------------------CUGUUGCGUCG-GCU------GU d.16.b.S.bottropensis.fasta ---------------------------CUGUCGCGUCG-GAU------GU d.16.b.S.scabiei.fasta ---------------------------CUGUCGCGUCG-GAU------GU d.16.b.S.neyagawaensis.fasta ---------------------------CUGUCGCGUCG-GAU------GU d.16.b.S.diastatochromogenes.f ---------------------------CUGUCGCGUCG-GAU------GU d.16.b.Streptomyces.sp.fasta ---------------------------CUGUCGCGUCG-GAU------GU d.16.b.S.acidiscabies.fasta ---------------------------UUGUCGCGUCG-GAU------GU d.16.b.S.griseus.fasta ---------------------------UUGUCACGUCG-GAU------GU d.16.b.S.ornatus.fasta ---------------------------UUGUCACGUCG-GAU------GU d.16.b.S.subrutilus.fasta ---------------------------UUGUCACGUCG-GAU------GU d.16.b.S.bikiniensis.fasta ---------------------------UUGUCACGUCG-GGU------GU d.16.b.S.galbus.fasta ---------------------------UUGUCACGUCG-GGU------GU d.16.b.S.hygroscopicus.fasta ---------------------------UUGUCACGUCG-GGU------GU d.16.b.S.lincolnensis.fasta ---------------------------UUGUCACGUCG-GGU------GU d.16.b.S.coelicolor.fasta ---------------------------UUGUCACGUCG-GUU------GU d.16.b.S.tendae.fasta ---------------------------UUGUCACGUCG-GUU------GU d.16.b.S.ambofaciens.fasta ---------------------------UUGUCACGUCG-GUU------GU d.16.b.S.eurythermus.fasta ---------------------------UUGUCACGUCG-GUU------GU d.16.b.S.nodosus.fasta ---------------------------UUGUCGCGUCGCGUU------GU d.16.b.S.sampsonii.fasta ---------------------------UUGUCACGUCG-GUU------GU d.16.b.S.glaucescens.fasta ---------------------------UUGUCGCGUCG-GAU------GU d.16.b.S.pseudogriseolus.fasta ---------------------------UUGUCACGUCG-GUU------GU d.16.b.S.caelestis.fasta ---------------------------UUGUCGCGUCG-GUU------GU d.16.b.S.bluensis.fasta ---------------------------UUGUCACGUCG-GGU------GU d.16.b.S.espinosus.fasta ---------------------------CUGUCGCGUCG-GUU------GU d.16.b.S.mashuensis.fasta ---------------------------UUGUCGCGUCG-GAU------GU d.16.b.S.rimosus.fasta ---------------------------UUGUCGCGUCG-GAU------GU d.16.b.S.limosus.fasta ---------------------------UUGUCACGUCG-GUU------GU d.16.b.S.odorifer.fasta ---------------------------UUGUCACGUCG-GUU------GU d.16.b.S.felleus.fasta ---------------------------UUGUCACGUCG-GUU------GU d.16.b.S.albidoflavus.fasta ---------------------------UUGUCACGUCG-GUU------GU d.16.b.S.gougerotii.fasta ---------------------------UUGUCACGUCG-GUU------GU d.16.b.S.rutgersensis.fasta ---------------------------UUGUCACGUCG-GUU------GU d.16.b.S.intermedius.fasta ---------------------------UUGUCACGUCG-GUU------GU d.16.b.S.thermodiastaticus.fas ---------------------------UUGUCGCGUCG-GUU------GU d.16.b.S.thermoviolaceus.fasta ---------------------------UUGUCGCGUCG-GUU------GU d.16.b.S.thermovulgaris.1.fast ---------------------------UUGUCGCGUCG-GUU------GU d.16.b.S.thermovulgaris.2.fast ---------------------------UUGUCGCGUCG-GUU------GU d.16.b.S.macrosporus.fasta ---------------------------UUGUCGCGUCG-GUU------GU d.16.b.S.megasporus.fasta ---------------------------CUGUCGCGUCG-GAU------GU d.16.b.S.thermolineatus.fasta ---------------------------UUGUCGCGUCG-GUC------GU d.16.b.M.tuberculosis.2.fasta ---------------------------UUGUCGCGUUG-UUC------GU d.16.b.M.tuberculosis.3.fasta ---------------------------UUGUCGCGUUG-UUC------GU d.16.b.M.avium.fasta ---------------------------UUGUCGCGUUG-UUC------GU d.16.b.M.leprae.fasta ---------------------------UUGUCGCGUUG-UUC------GU d.16.b.M.leprae.GEN.fasta ---------------------------UUGUCGCGUUG-UUC------GU d.16.b.M.tuberculosis.CDC1551. ---------------------------UUGUCGCGUUG-UUC------GU d.16.b.M.tuberculosis.GEN.fast ---------------------------UUGUCGCGUUG-UUC------GU d.16.b.N.asteroides.fasta ---------------------------UCGUCGCGUCG-NUC------GU d.16.b.R.erythropolis.fasta ---------------------------UUGUCGCGUCG-UUU------GU d.16.b.C.diphtheriae.fasta ---------------------------UUGUCGCGUCG-UCU------GU d.16.b.A.israelii.fasta ---------------------------UGGUCGCGUCU-GCC------GU d.16.b.B.hyodysenteriae.fasta ---------------------------CUUAUAAGUCU-AAG------GU d.16.b.G.subterranea.fasta ---------------------------CUCAUAAGUCAGGU-------GU d.16.b.P.miotherma.fasta ---------------------------UGAUCAAGUCAUCU-------GU d.16.b.B.andersonii.fasta ---------------------------UUAUUAGGCCGAGU-------GU d.16.b.H.aurantiacus.fasta ---------------------------CGAUGAUGUGCCGC-------GU d.16.b.Leptospirillium.sp.fast ---------------------------UUGUCAAGUCUUUG-------GU d.16.b.A.aeolicus.fasta ---------------------------CGGGUAAGCGGGAU-------GU d.16.b.A.pyrophilus.fasta ---------------------------CGGGUAAGCGGGAU-------GU d.16.b.T.maritima.fasta ---------------------------CUGGUGUGUCGGAU-------GU d.16.b.T.maritima.GEN.fasta ---------------------------CUGGUGUGUCGGAU-------GU n.16.b.T.thermophilus.2.num.fa ---------------------------CUGGGGCGUCCCAU-------GU s.16.b.T.thermophilus.2.schem. ---------------------------CUGGGGCGUCCCAU-------GU d.16.b.T.thermophilus.2.fasta ---------------------------CUGGGGCGUCCCAU-------GU s.16.b.T.thermophilus.1.schem. ---------------------------CUGGGGCGUCCCAU-------GU n.16.b.T.thermophilus.1.num.fa ---------------------------CUGGGGCGUCCCAU-------GU d.16.b.T.thermophilus.1.fasta ---------------------------CUGGGGCGUCCCAU-------GU d.16.b.T.aquaticus.fasta ---------------------------UUGGGGCGUCCCAU-------GU d.16.b.T.roseum.fasta ---------------------------UGGGUACGCCGCGU-------GU d.16.b.P.marina.fasta ---------------------------CCUACAAGUCAGGU-------GU d.16.b.P.staleyi.fasta ---------------------------CUUGUAAGUGGGGU-------GU d.16.b.P.Schlesner.fasta ---------------------------GUGGUAAGUGGGGU-------GU d.16.b.G.obscuriglobus.1.fasta ---------------------------CUAUCAAGUCUGGG-------GU d.16.b.I.pallida.fasta ---------------------------AGGGCGCGUCGGCG-------UU d.16.a.P.abyssi.fasta ---------------------------CCCGUAAGUCCCUG-------GC d.16.a.P.horikoshii.fasta ---------------------------CCCGUAAGUCCCUG-------GC d.16.a.P.furiosus.fasta ---------------------------CCCGUAAGUCCCUG-------GC d.16.a.T.celer.fasta ---------------------------CCCGUAAGUCCCUG-------GC d.16.a.A.fulgidus.fasta ---------------------------CUGGUAAGUCCUCC-------GG d.16.a.N.equitans.fasta ---------------------------CCGGUGUGGCUCCG-------GU d.16.a.A.pernix.K1.fasta ---------------------------UCGACAAGUCCCCG-------CC d.16.a.P.occultum.fasta ---------------------------CCGGUAAGUCCCCC-------CC d.16.a.T.tenax.fasta ---------------------------CCGGCAAGUCGCUC-------CU d.16.a.S.acidocaldarius.fasta ---------------------------CCACCAAGUCGCCC-------CU d.16.a.S.solfataricus.fasta ---------------------------CCACCAAGUCGCCC-------CU d.16.a.S.solfataricus.2.fasta ---------------------------CCGACAAGUCACUC-------CU d.16.a.M.thermautotrophicus.1. ---------------------------CUGAUAAGUCUCUG-------GU d.16.a.M.thermautotrophicus.2. ---------------------------CUGAUAAGUCUCUG-------GU d.16.a.M.formicicum.fasta ---------------------------UUGAUAAGUCUCUG-------GU d.16.a.M.vannielii.fasta ---------------------------CCAGUAAGUCCCUG-------UU d.16.a.H.marismortui.rrnA.fast ---------------------------CGAACAAGUCCGUU-------GG d.16.a.H.marismortui.rrnB.fast ---------------------------UGUGUAAGUCCAUU-------GG d.16.a.Halobacterium.sp.fasta ---------------------------UGAACAAGUCCGUU-------GG d.16.a.N.bangense.fasta ---------------------------CGUGCAAGUCUAUC-------GG d.16.a.N.innermongoliae.fasta ---------------------------CGCGCAAGUCUAUC-------GG d.16.a.H.volcanii.fasta ---------------------------CACGAAGGUUCAUC-------GG d.16.a.M.hungatei.fasta ---------------------------UAUACAAGUCCCUU-------GA d.16.a.P.torridus.fasta ---------------------------UUUGUAAAUCUCCA-------GG d.16.a.T.acidophilum.fasta ---------------------------CUUAUAAAUCUUCA-------GA a.16.e.G.ardeae.fasta -------------------------------------------------- d.16.e.G.intestinalis.fasta -------------------------------------------------- a.16.e.G.muris.fasta -------------------------------------------------- d.16.e.A.bracteata.fasta -------------------------------------------------- d.16.e.Glomus.sp.W3349.fasta ------------------------------UAGGAUC------------- d.16.e.S.cerradensis.fasta ------------------------------U-GAAUC------------- a.16.e.G.intraradices.fasta ------------------------------UAGGAUU------------- d.16.e.S.culisetae.fasta ------------------------------CAGAACC------------- a.16.e.P.balamuthi.fasta YAAAGACUUCACGUGUCGGGCUUUCAGUCUUAGGACCAUCCAUUAAGACU d.16.e.A.flavus.fasta ------------------------------UAGGACC------------- d.16.e.T.caries.fasta ------------------------------UAGGAUC------------- d.16.e.M.circinelloides.fasta -------------------------------GGAACU------------- d.16.e.M.racemosus.fasta -------------------------------GGAACU------------- d.16.e.R.oryzae.fasta -------------------------------GGUACU------------- a.16.e.M.edulis.fasta ACCUCGGUUCUA----UUUUGCUGGUUUUC-GGAGCUC------------ a.16.e.P.magellanicus.fasta ACCUCGGUUCUA----UUUUGUUGGUUUUC-GGAACUU------------ b.16.e.E.granulosus.fasta ACUUCGGUUCUA----UUUCGUUGGUUUUC-GGAUCC------------- d.16.e.D.melanogaster.fasta ACCUCUGUUCUGC---UUUCAUUGGUUUUC-AGAUCAA------------ b.16.e.C.koreana.fasta AUCUCGGUUCUA----UUUUGUUGGCUUUC-GGAGUC------------- b.16.e.A.australis.fasta ACCUCGUCUCUA----UUUUGUUGGUUUUC-GGAAAAC------------ b.16.e.O.utahensis.fasta ACCUCGGUUCUA----UUUUGUUGGUUUUUUGGAACCA------------ b.16.e.A.salina.fasta ACCUCGGUCUUA----UUAUGUUGGUUUUCUGGACUU------------- d.16.e.M.musculus.fasta ACCGCGGUUCUA----UUUUGUUGGUUUUC-GGAACU------------- d.16.e.R.norvegicus.fasta ACCGCGGUUCUA----UUUUGUUGGUUUUC-GGAACU------------- d.16.e.H.sapiens.fasta ACCGCGGUUCUA----UUUUGUUGGUUUUC-GGAACU------------- d.16.e.O.cuniculus.fasta ACCGCGGUUCUA----UUUUGUUGGUUUUC-GGAACU------------- d.16.e.X.borealis.fasta ACUCCGGUUCUA----UUUUGUUGGUUUUC-GGAACU------------- d.16.e.X.laevis.fasta ACUCCGGUUCUA----UUUUGUUGGUUUUC-GGAACU------------- d.16.e.A.castellanii.fasta ------------------------CAGCGCGAGGACUA------------ d.16.e.B.mandrillaris.fasta -----------------------------CUAAGUAGG------------ d.16.e.P.falciparum.A.fasta --------------------------------UUGGCU------------ d.16.e.P.falciparum.S.fasta ------------------------UAUUCUUAUUAGCU------------ d.16.e.P.vivax.A.fasta --------------------------------U-GGCU------------ d.16.e.P.vivax.O.fasta --------------------------------U-GGCU------------ d.16.e.P.vivax.S.fasta --------------------------------UUGGCU------------ d.16.e.E.histolytica.fasta ----------------------------------AGAG------------ d.16.e.I.hoferi.fasta -------------------------------AAGAUCG------------ d.16.e.Dermocystidium.sp.fasta -------------------------------AGGACCA------------ d.16.e.S.destruens.fasta -------------------------------AGGACCG------------ d.16.e.A.unguiculata.fasta -------------------------------AGGACCG------------ d.16.e.D.grandis.fasta -------------------------------AGGACUG------------ d.16.e.A.macrogynus.fasta -------------------------------AGGACUA------------ d.16.e.B.emersonii.fasta -------------------------------GGGACUG------------ d.16.e.C.albicans.fasta -------------------------------------------------- d.16.e.S.cerevisiae.fasta -------------------------------------------------- d.16.e.N.crassa.fasta -------------------------------------------------- d.16.e.P.anserina.fasta -------------------------------------------------- d.16.e.C.immitis.fasta -------------------------------------------------- d.16.e.L.major.fasta GUCCGGC---CGU---AACGCCUUU--UCAACUCACGG------------ d.16.e.T.cruzi.fasta GUUUCACAUGUGU---CAUGCCUUCCCUCAACUCACGG------------ d.16.e.T.brucei.fasta ---UUAC----------AUUCAUUG---CGACGCGCGG------------ d.16.e.P.carinii.fasta -------------------------------------------------- d.16.e.C.neoformans.fasta -------------------------------AGGAUCG------------ d.16.e.Fungus.sp.QPX.fasta -------------------------------AGGAUCG------------ d.16.e.U.maydis.fasta -------------------------------AGAACUG------------ d.16.e.M.leidyi.fasta -------------------------------GAGACCG------------ d.16.e.T.cystophora.fasta -------------------------------AGGACCG------------ d.16.e.M.prolifera.fasta -------------------------------GGGACCG------------ d.16.e.P.haeckeli.fasta -------------------------------GAGAUCG------------ d.16.e.E.rotunda.fasta -------------------------------AGGACUG------------ d.16.e.P.chromatophora.fasta -------------------------------AGAGCCG------------ d.16.e.A.majus.fasta -------------------------------GGGAUYG------------ d.16.e.S.indicum.fasta -------------------------------GGGAUCG------------ d.16.e.D.grandiflora.fasta -------------------------------GGGAUCG------------ d.16.e.Pla.lanceolata.fasta -------------------------------GGGAUCG------------ d.16.e.N.tabacum.fasta -------------------------------GGGAUCG------------ d.16.e.A.thaliana.fasta -------------------------------GGGAUCG------------ d.16.e.S.alba.fasta -------------------------------GGGAUCG------------ d.16.e.S.tuberosum.fasta -------------------------------GGGAUCG------------ d.16.e.F.x.ananassa.fasta -------------------------------GGGAUCG------------ d.16.e.G.max.fasta -------------------------------GGGAUCG------------ d.16.e.O.sativa.fasta -------------------------------GGGAUCG------------ d.16.e.Z.mays.fasta -------------------------------GGGAUCG------------ d.16.e.A.verticilliflorum.fast -------------------------------GGGAUCG------------ d.16.e.G.spirotaenia.fasta -------------------------------GGGACCG------------ d.16.e.Staurastrum.sp.M752.fas -------------------------------GGGACCG------------ d.16.e.C.paradoxa.fasta -------------------------------AGGAUUG------------ d.16.e.G.nostochinearum.fasta -------------------------------AGGAUCG------------ d.16.e.G.wittrockiana.fasta -------------------------------AGGGAUG------------ d.16.e.C.luteoviridis.fasta -------------------------------GAGACCG------------ d.16.e.O.longa.fasta -------------------------------GGGAUUG------------ d.16.e.P.weissei.fasta -------------------------------GGGACUG------------ d.16.e.C.citrina.fasta -------------------------------GGGACUG------------ d.16.e.G.steinii.fasta -------------------------------GGGAUUG------------ d.16.e.Ple.lanceolata.fasta -------------------------------GGGACUG------------ d.16.e.O.quadricornutus.fasta -------------------------------GGGAUUG------------ d.16.e.S.lemnae.fasta -------------------------------GGGACUG------------ d.16.e.S.mytilus.fasta -------------------------------GGGACUG------------ d.16.e.E.mobilis.fasta -------------------------------GGGACUG------------ d.16.e.O.granulifera.1.fasta -------------------------------GGGACUG------------ d.16.e.O.granulifera.2.fasta -------------------------------GGGAUUG------------ d.16.e.U.gallina.fasta -------------------------------GGGACUG------------ d.16.e.U.pisces.fasta -------------------------------GGGACUG------------ d.16.e.P.lepisma.fasta -------------------------------GGGACUG------------ d.16.e.U.grandis.fasta -------------------------------GGGACUC------------ d.16.e.B.coli.fasta -------------------------------GA----------------- d.16.e.E.aediculatus.fasta -------------------------------AGGAC-A------------ d.16.e.T.thermophila.fasta -------------------------------GGAUUUG------------ d.16.e.Bangia.sp.NWT.fasta -------------------------------AGUGACC------------ d.16.e.Bangia.sp.VIS7.fasta -------------------------------AGUGGCU------------ d.16.e.E.carnea.fasta -------------------------------GAGACCG------------ d.16.e.R.parvula.fasta -------------------------------GGGACCG------------ d.16.e.C.coeruleus.fasta -------------------------------UGGACCG------------ d.16.e.P.aerugineum.1.fasta -------------------------------AGGCYGG------------ d.16.e.R.maculata.fasta -------------------------------GGUUACG------------ d.16.e.A.ambigua.fasta --------------------------------GCGCCG------------ d.16.e.A.baicalensis.fasta --------------------------------GCGCCA------------ d.16.e.S.nipponica.fasta --------------------------------GCAUCA------------ d.16.e.C.radiatus.fasta --------------------------------GUGCCA------------ d.16.e.C.criophilum.fasta --------------------------------GCGCAA------------ d.16.e.A.capitellata.fasta --------------------------------GCACCG------------ d.16.e.S.pupula.fasta --------------------------------GCACCG------------ d.16.e.T.antarctica.fasta --------------------------------GCACUG------------ d.16.e.E.triangulatum.fasta --------------------------------GCACCG------------ d.16.e.A.bongranii.fasta --------------------------------GUACUU------------ d.16.e.Pseudogomphonema.sp.fas --------------------------------GCGAAG------------ d.16.e.D.tenue.fasta --------------------------------GCACCG------------ d.16.e.G.marina.fasta --------------------------------GCACCG------------ d.16.e.Thalassionema.sp.fasta --------------------------------GCACUA------------ d.16.e.R.belgicae.fasta --------------------------------GCACCG------------ d.16.e.Undatella.sp.fasta --------------------------------GCAUCG------------ d.16.e.C.belgica.fasta --------------------------------GCACCA------------ d.16.e.O.sinensis.fasta --------------------------------GCCCCG------------ d.16.e.D.brightwellii.fasta --------------------------------GUGCCA------------ d.16.e.L.undulatum.fasta --------------------------------GUGCCA------------ d.16.e.T.eccentrica.fasta --------------------------------GUUACG------------ d.16.e.T.pseudonana.fasta --------------------------------GCACCG------------ d.16.e.S.costatum.fasta --------------------------------GAGUCA------------ d.16.e.P.laevis.fasta --------------------------------GUGUCA------------ d.16.e.L.borealis.fasta --------------------------------GUGUGA------------ d.16.e.P.pseudodenticulata.fas --------------------------------GUGUAA------------ d.16.e.B.mediterranea.fasta --------------------------------GUACCU------------ d.16.e.B.pacifica.fasta --------------------------------GUACCU------------ d.16.e.L.minuta.fasta --------------------------------AUACCA------------ d.16.e.L.danicus.fasta --------------------------------GUACGG------------ d.16.e.Chaetoceros.sp.fasta --------------------------------GAACCA------------ d.16.e.A.invadans.fasta --------------------------------ACGCCA------------ d.16.e.L.giganteum.fasta --------------------------------ACACCA------------ d.16.e.M.varians.fasta --------------------------------GACCCA------------ d.16.e.B.hominis.fasta --------------------------------UCAUGG------------ d.16.e.P.marinus.fasta ------------------------------CUAGGACU------------ d.16.e.T.gondii.fasta ------------------------------CUAGGACU------------ d.16.e.A.fundyense.fasta ------------------------------CUAGAAUU------------ d.16.e.B.bigemina.fasta ------------------------------UG-AGCCU------------ d.16.e.B.canis.fasta ------------------------------GGGAACCU------------ d.16.e.Babesia.sp.OKD.fasta ------------------------------GUGAACCU------------ d.16.e.B.microti.1.fasta ------------------------------UUGAGCCA------------ d.16.e.B.microti.2.fasta ------------------------------UUGAACCA------------ d.16.e.B.microti.3.fasta ------------------------------UUGAGCCA------------ d.16.e.B.microti.4.fasta ------------------------------UUGAGCCA------------ d.16.e.B.microti.5.fasta ------------------------------UUGAGCCA------------ d.16.e.B.rodhaini.fasta ------------------------------UUGAGCCA------------ d.16.e.B.gibsoni.fasta ------------------------------CAGGACCA------------ d.16.e.B.bovis.fasta ---------------------------------GACUU------------ d.16.e.J.libera.fasta ------------------------------GCGCAUCG------------ d.16.e.R.americana.fasta ------------------------------CCG-ACUG------------ d.16.e.B.ostreae.fasta ---------------------------------AGCUG------------ d.16.e.A.dasyae.fasta -------------------------------GAGAGCC------------ d.16.e.A.hermannii.fasta -------------------------------GAGAGCC------------ d.16.e.N.helminthoides.fasta -------------------------------GAGAGCC------------ d.16.e.B.gelatinosum.fasta -------------------------------GAGGGCC------------ d.16.e.N.tortuosa.fasta -------------------------------GAGAGCC------------ d.16.e.T.hispida.fasta -------------------------------GAGAGCC------------ d.16.e.T.violacea.4.fasta -------------------------------GAGAGCC------------ d.16.e.T.violacea.1.fasta -------------------------------GAGAGCC------------ d.16.e.T.violacea.2.fasta -------------------------------GAGAGCC------------ d.16.e.N.shawii.fasta -------------------------------GAGAGCC------------ d.16.e.B.investiens.fasta -------------------------------GAGGGCC------------ d.16.e.B.macrosporum.fasta -------------------------------CAGUGGC------------ d.16.e.A.plicata.fasta -------------------------------GAGGCCG------------ d.16.e.C.officinalis.fasta -------------------------------UAGGGCU------------ d.16.e.R.carriebowensis.fasta -------------------------------GAGGGGC------------ d.16.e.B.hamifera.fasta -------------------------------GAGGCGC------------ d.16.e.G.vagum.fasta -------------------------------GAGAAUU------------ d.16.e.C.crispus.fasta -------------------------------GAGGAUC------------ d.16.e.H.plana.fasta -------------------------------UAGGAUC------------ d.16.e.R.leptophylla.fasta -------------------------------UAGAAUC------------ d.16.e.P.pulvinata.fasta -------------------------------GAGGAUC------------ d.16.e.C.rubrum.fasta -------------------------------GAGUAUC------------ d.16.e.Gracilariopsis.sp.fasta -------------------------------UUGAAUC------------ d.16.e.B.moritziana.fasta -------------------------------CUGUAUC------------ d.16.e.H.rubra.fasta -------------------------------AGGUGUC------------ d.16.e.D.grisea.fasta -------------------------------AGGUGUC------------ d.16.e.N.fowleri.fasta ------------------------------UGUAGCUU------------ d.16.e.N.gruberi.fasta ------------------------------UGGAGCUU------------ a.16.e.Hexamita.sp.fasta ----------------------------------ACGGG----------- d.16.e.T.foetus.fasta ---------------------------------UACCUU----------- d.16.e.A.khaliulini.fasta -------------------------------------------------- d.16.e.E.aedis.fasta -------------------------------------------------- d.16.e.A.connecticus.fasta -------------------------------------------------- d.16.e.I.barri.fasta -------------------------------------------------- d.16.e.A.ferocious.fasta -------------------------------------------------- d.16.e.Amblyospora.sp.fasta -------------------------------------------------- d.16.e.C.lunata.fasta -------------------------------------------------- d.16.e.P.anophelis.fasta -------------------------------------------------- d.16.e.Hazardia.sp.fasta -------------------------------------------------- d.16.e.H.milleri.fasta -------------------------------------------------- d.16.e.P.simulii.fasta -------------------------------------------------- d.16.e.W.palustris.fasta -------------------------------------------------- d.16.e.Nosema.sp.03.fasta -------------------------------------------------- d.16.e.Nosema.sp.05.fasta -------------------------------------------------- d.16.e.Endoreticulatus.sp.fast -------------------------------------------------- d.16.e.Nosema.sp.02.fasta -------------------------------------------------- d.16.e.N.spodopterae.fasta -------------------------------------------------- d.16.e.N.trichoplusiae.fasta -------------------------------------------------- d.16.e.N.bombycis.27.fasta -------------------------------------------------- d.16.e.N.bombycis.02.fasta -------------------------------------------------- d.16.e.V.imperfecta.fasta -------------------------------------------------- d.16.e.N.furnacalis.fasta -------------------------------------------------- d.16.e.Microsporidium57864.fas -------------------------------------------------- d.16.e.Vairimorpha.sp.C21.fast -------------------------------------------------- d.16.e.N.oulemae.fasta -------------------------------------------------- d.16.e.N.necatrix.fasta -------------------------------------------------- d.16.e.V.necatrix.fasta -------------------------------------------------- d.16.e.N.apis.fasta -------------------------------------------------- d.16.e.O.occidentalis.fasta -------------------------------------------------- d.16.e.Microsporidium.sp.DP119 -------------------------------------------------- d.16.e.V.corneae.fasta -------------------------------------------------- d.16.e.A.michaelis.fasta -------------------------------------------------- d.16.e.T.contejeani.fasta -------------------------------------------------- d.16.e.E.hellem.fasta -------------------------------------------------- d.16.e.Encephalitozoon.sp.fast -------------------------------------------------- d.16.e.E.cuniculi.fasta -------------------------------------------------- d.16.e.O.colligata.fasta -------------------------------------------------- d.16.e.E.salmonis.fasta -------------------------------------------------- d.16.e.N.salmonis.fasta -------------------------------------------------- d.16.e.Enterocytozoonidae.sp.f -------------------------------------------------- d.16.e.E.bieneusi.fasta -------------------------------------------------- d.16.e.B.algerae.fasta -------------------------------------------------- d.16.e.T.solenopsae.fasta -------------------------------------------------- d.16.e.V.acridophagus.fasta -------------------------------------------------- d.16.e.Bacillidium.sp.fasta -------------------------------------------------- d.16.e.P.cristatellae.fasta -------------------------------------------------- d.16.e.Pleistophora.sp.fasta -------------------------------------------------- d.16.e.O.operophterae.fasta -------------------------------------------------- d.16.e.F.magnivora.fasta -------------------------------------------------- d.16.e.G.atherinae.fasta -------------------------------------------------- d.16.e.Ichthyosporidium.sp.fas -------------------------------------------------- d.16.e.L.acerinae.fasta -------------------------------------------------- d.16.e.H.anguillarum.fasta -------------------------------------------------- d.16.e.P.mirandellae.fasta -------------------------------------------------- d.16.e.T.hominis.fasta -------------------------------------------------- d.16.e.V.culicis.fasta -------------------------------------------------- d.16.e.P.hippoglossoideos.fast -------------------------------------------------- d.16.e.Microgemma.sp.fasta -------------------------------------------------- d.16.e.S.lophii.fasta -------------------------------------------------- d.16.e.Pleistophora.sp.LS.fast -------------------------------------------------- d.16.e.D.gammarellum.fasta -------------------------------------------------- d.16.e.M.prosopium.fasta -------------------------------------------------- d.16.e.A.scoticae.fasta -------------------------------------------------- d.16.e.P.whitei.fasta -------------------------------------------------- a.16.c.C.coccineum.fasta CAAAUCCCAGGGCUCAACCCUGUA-AUACGGUGGAA---------ACUAU a.16.c.C.ruber.fasta AAAAUCCCAGGGCUCAACCCUGUACAGGUGGUAGAA---------ACUAU d.16.c.N.tabacum.fasta CAAAUCCCAGGGCUCAACCCUGGACAGGCGGUGGAA---------ACUAC d.16.c.S.oleracea.fasta CAAAUCCCAGGGCUCAACCCUGGACAGGCGGUGGAA---------ACUAC d.16.c.Z.mays.fasta CAAAUCCCAGGGCUCAACCCUGGACAGGCGGUGGAA---------ACUAC d.16.c.M.polymorpha.fasta CAAAUCCCAGGGCUCAACCCUGGACAGGCGGUGGAA---------ACUAC d.16.c.R.communis.fasta CAAAUCCCAGGGCUCAACCCUGGACAGGCGGUGGAA---------ACUGC d.16.c.C.vulgaris.fasta CAAAGAUCAGGGCUUAACCCUGGGCCGGCAGGAGAA---------ACUCU d.16.c.P.wickerhamii.fasta CAAAAAUUAGGGCUUAACCCUAUACAGGCAGAAUAA---------ACUUU d.16.c.P.minor.fasta CAAAUCCCAGAGCUUAACUUUGGAUCGGCACGAGAA---------ACUCG d.16.c.N.olivacea.fasta CAAAGCCCAGAGCUUAACUCUGGUCCGGCAGUAGAA---------ACUUC d.16.c.P.parkeae.fasta GAAAGAGUACAGCUUAACUGUAGAUCCGCAGUGGAA---------ACUAC d.16.c.C.reinhardtii.fasta CAAAUACCAGGGCUCAACCUUGGACCGGCAUUGGAGU--------ACUCA b.16.m.A.castellanii.fasta UUUAAAGGCUUUUUA------------AUACUAACA------------GA d.16.c.P.thurberi.fasta UUUAUAGUUUUUUUGGGGUGCAU-UUCAUACUAACA------------GA b.16.m.C.crispus.fasta UUUAAUUAAUUUAAA------------AAAUUAAUU------------UU d.16.c.T.gondii.fasta UUUAGAAAAAGGAAGA-----------AAACUAUUA------------AU b.16.m.N.crassa.fasta UUUAAAGGGUACUCAGACGGAAAAAUUCGCCCAAAUAU---AGGGGACAA b.16.m.P.anserina.fasta UUUAAAGGGUACUUAGACGGUAGAAUUUGCCUUAAC------GGGAACAA b.16.m.P.chrysogenum.fasta UUUAAAGGGUAAGUAGACGGUAAAUUAAACUCUAAA-----CGAGUACUU b.16.m.E.nidulans.fasta UUUAAAGGGUACCUAGACGGUAAAUUAAACUCUAAA-----UGAGUACUU b.16.m.S.cerevisiae.fasta UUUAAAGGAUCCGUAGAAUGAAU--U-AUAUAUUAU--------A---AU b.16.m.W.saturnus.m.fasta UUUAAAGGAUCCGUAGAAUUUAU----AUAUAAUAU--------AUAUAU b.16.m.P.minor.fasta UUUAAA---UUUUGAAAUUUAAU--U-UAAUAAAAU--------AAAACU d.16.c.P.falciparum.fasta UUUAAAUUAAAUUUAAAAUAAAU--UAAUAAAUAAU--------AAUAUA d.16.c.B.bovis.fasta AAUAAUAUUUUUAAACAUUAAUA--UUAAGAUUAAU--------AAACUU b.16.m.T.pyriformis.fasta UAAAAAUGUAAUAAAAACUAAAUACUGUAGUUAUUU--------UAUAAA d.16.m.S.sinuspaulianus.fasta UAUUAUUAUAAUAGCUAUUAAAUGAUAAGAUGAAUU--------G--AAG b.16.m.P.tetraurelia.fasta UAAUAACUAUUUUUAUAUAAAAAGAUAUUAAUAAAA---------AGGAC b.16.m.D.discoideum.fasta UAUGAAAAACACUGAAAAAAGAGGUGUGGGUAUAAA-------AACAAAC d.16.m.P.polycephalum.fasta UAAAAAACUGAGGUAAACCCUCU--UCAUUCUGUAU--------UCACUC b.16.m.P.littoralis.fasta UAAAUAUUAUAGCUUAACUAUAAAAAGGCAUUUAAA----------ACAU b.16.m.P.wickerhamii.fasta AAUAGAUGUAAUUUAUAAUAAUAAGUUAUAUUUAUGU------UUUCCAU d.16.c.H.africana.fasta CUUAACUCUGAUUAGG-----------CGAUUGACU-------------A d.16.c.C.fragile.fasta AUCAGAGCUUAACUUUGAACAAG--CAGUAUGAAAC------------UA d.16.c.C.sertularioides.fasta UCCAAAGCUCAACUUUGGGAAGU--CAGUACGAUAC------------UC d.16.c.C.humicola.fasta CAAAUCCAUUGGCUCAACCAAAGGCAGGCAUUGGAGU---------ACUA d.16.c.P.uvella.fasta AAAAGACUUAGGCUUAACCAAAGGGUUGCAUUAAAA----------ACUA a.16.c.G.nostochinearum.fasta UAAAGAUUGGGGCUUAACCCCAAACAGGCAAUGGAA---------ACUGU a.16.c.G.wittrockiana.fasta UAAAGGCUAGGGCUUAACCUUAGAAAAGCAAUGGAA---------ACUGU d.16.c.C.paradoxa.fasta UAAAGGCUGGGGCUUAACCCCAAAAAGGCAAUGGAA---------ACUGU d.16.y.C.paradoxa.fasta UAAAGGCUGGGGCUUAACCCCAAAAAGGCAAUGGAA---------ACUGU d.16.c.Cryptomonas.sp.fasta UAAAGACUAGGGCUUAACCCUAGAAAAGCAGUGGAA---------ACUGC d.16.c.P.palmata.fasta UAAAUCUUAGGGCUCAACCCUAAGCCAGCAGUAGAA---------ACUUC d.16.c.H.akashiwo.fasta UAAAUCUUAAGGCUCAACCUUAAACCAGCAAUGGAA---------ACUAU d.16.c.S.pseudocostatum.fasta UAAAUCUUGAGGCUCAACUUCAAAAUCGCAGUCGAA---------ACUAU d.16.c.P.littoralis.fasta UAAAGCUUGAAGCUUAACUUCAAAAGUGUAAUAGAA---------ACUAC d.16.c.C.caldarium.fasta UAAAGCUUGAGGCUUAACCUCAAAAAAGCAGUGGAA---------ACUGA a.16.c.E.huxleyi.fasta UAAAGACCAGGGCUUAACCCUGGGAAAGCAAUGGAA---------ACUAC d.16.c.E.gracilis.fasta UAAAAGUCAAAGCUUAACUUUGGAAGGGCAUUAAAA---------ACUGC d.16.b.Anabaena.sp.fasta UAAAGAGCAAGGCUCAACCUUGUAAAGGCAGUGGAA----------ACUA d.16.b.Chlorogloeopsis.PCC7518 CAAAGGUUCUGGCUUAACCAGAGACAGGCAGUAGAA----------ACUG d.16.b.Synechococcus.sp.fasta CAAAGCGUGGGGCUCAACCUCAUACAGGCAAUGGAA----------ACUG d.16.b.Synechocystis.PCC6803.G UAAAGAAUGGAGCUUAACUCCAUAGGAGCGGUGGAA----------ACUG d.16.b.O.agardhii.fasta UAAAGAGCGAGGCUUAACCUCGUAAAGGCAGUGGAA----------ACUG d.16.b.Pleurocapsa.7516.fasta UAAAGACAGAAGCUCAACUUCUGAGCAGCAGUGGAA----------ACUG d.16.b.M.aeruginosa.fasta CAAAUCAGGUUGCUUAACGACCUAAAGGCGGUGGAA----------ACUG b.16.m.C.reinhardtii.fasta ----------------------------------UA----------AUGG d.16.m.C.eugametos.fasta ----------------------------------GA----------CUUA b.16.m.M.senile.fasta ----------------------------------AA----------AUUG d.16.b.S.pneumoniae.fasta UAAAGGCUGUGGCUCAACCAUAGUAGGCU-UUGGAA----------ACUG d.16.b.S.pyogenes.fasta UAAAGGCAUUGGCUNAACCAAUGUACGCU-UUGGAA----------ACUG d.16.b.B.anthracis.fasta NAAAGCCCACGGCUNNACCGUGGAGGGUCAUUGGAA----------ACUG d.16.b.B.cereus.1.fasta GAAAGCCCACGGCUCAACCGUGGAGGGUCAUUGGAA----------ACUG d.16.b.E.faecalis.fasta GAAAGCCCCCGGCUCAACCGGGGAGGGUCAUUGGAA----------ACUG d.16.b.E.faecium2.fasta GAAAGCCCCCGGCUCAACCGGGGAGGGUCAUUGGAA----------ACUG d.16.b.L.monocytogenes.fasta GAAAGCCCCCGGCUUAACCGGGNNGGGUCAUUGGAA----------ACUG d.16.b.B.subtilis.fasta GAAAGCCCCCGGCUCAACCGGGGAGGGUCAUUGGAA----------ACUG d.16.b.B.subtilis.GEN.fasta GAAAGCCCCCGGCUCAACCGGGGAGGGUCAUUGGAA----------ACUG d.16.b.B.halodurans.fasta GAAAGCCCCCGGCUCAACCGGGGAGGGUCAUUGGAA----------ACUG d.16.b.S.aureus.fasta GAAAGCCCACGGCUCAACCGUGGAGGGUCAUUGGAA----------ACUG d.16.b.S.aureus.GEN.fasta GAAAGCCCACGGCUCAACCGUGGAGGGUCAUUGGAA----------ACUG d.16.b.L.lactis.GEN.fasta AAAAGGCAGUGGCUCAACCAUUGUAUGCA-UUGGAA----------ACUG d.16.b.S.pyogenes.GEN.fasta UAAAGGCAUUGGCUCAACCAAUGUACGCU-UUGGAA----------ACUG d.16.b.L.acidophilus.fasta GAAAGCCCUCGGCUUAACCGAGGAACUGCAUCGGAA----------ACUG d.16.b.M.capricolum.fasta UAAAGUCCGGAGCUCAACUCCGGUUCGCC-UUGAAG----------ACUG d.16.b.M.mycoides.fasta UAAAGUCYGGAGCUCAACUCCGGUUCGCC-UUGAAA----------ACUG d.16.b.E.rhusiopathiae.fasta UAAAGUUCGGGGCUUAACCCCGNGAUGCC-AUAGAA----------ACUG d.16.b.C.innocuum.fasta AAAAGGCAAUGGCUCAACCAUUGUAAGCU-AUGGAA----------ACUG d.16.b.M.genitalium.fasta UAAAGGCAGCUGCUUAACAGUUGUAUGCA-UUGGAA----------ACUA d.16.b.M.pneumoniae.GEN.fasta UAAAGGCAGCUGCUUAACAGUUGUAUGCA-UUGGAA----------ACUA d.16.b.M.pneumoniae.fasta UAAAGGCAGCUGCUUAACAGUUGUAUGCA-UUGGAA----------ACUA d.16.b.M.gallisepticum.fasta UAAAAGCAAUUGCUUAACGAUUGUAUGCA-UUGGAA----------ACUU d.16.b.U.urealyticum.fasta UAAAUCUAGAUGCUUAACGUCUAGCUGUA-UCAAAA----------ACUG d.16.b.U.urealyticum.GEN.fasta UAAAUCUAGAUGCUUAACGUCUAGCUGUA-UCAAAA----------ACUG d.16.b.M.hyopneumoniae.fasta UAAAUGCUAAAGCUCAACUUUAGUCCGCU-UUAGAU----------ACUG d.16.b.F.necrophorum.fasta GAAAAUGCGGAGCUUCAACUCCGUAUGGCGUUGGAA----------ACUG d.16.b.F.nucleatum.fasta GAAAAUGCAGGGCU-CAACUCUGUAUUGCGUUGGAA----------ACUG d.16.b.S.moniliformis.fasta GAAAAGCUGUGGCUCAACCAUAGUCUUGCCUACAAA----------ACUG d.16.b.C.botulinum.F.fasta GAAAUCCCCGGGCUUAACCUGGGGGCUGCAUUCCAA----------ACUG d.16.b.C.tetani.fasta GAAAUACCUAAGCUUAACUUAGGGGCUGCAUUUCAA----------ACUG d.16.b.C.perfringens.fasta GAAAUACCCGGGCUCAACUUGGGUGCUGCAUUCCAA----------ACUG d.16.b.C.difficile.fasta GAAAGGCUACGGCUCAACCGUAGUAA-GCUCUUGAA----------ACUG d.16.b.E.brachy.fasta AUAAGGCAAUGGCUCAACCAUUGUUC-GCCCUAUGA----------ACUG d.16.b.Epulopiscium.sp.fasta GAAAGAUUAAAGCUCAACUUUAAAAUUGCAACUGAA----------ACUA d.16.b.H.chlorum.fasta GAAAGCUUGGAGCUCAACUCCGAAACGGCCUUGGAA----------ACUG b.16.m.G.max.fasta GAAAGUCGCCAAA--AACUGGUGGAAUGCUCUCGAA----------ACCA b.16.m.O.berteriana.fasta GAAAGUCGCCAAA--AACUGGCGGAAUGCUCUCGAA----------ACCA b.16.m.S.cereale.fasta GAAAGUCGCCAAA--AAGUGGCGGAAUGCUCUCGAA----------ACCA b.16.m.T.aestivum.fasta GAAAGUCGCCAAA--AAGUGGCGGAAUGCUCUCGAA----------ACCA d.16.m.Z.mays.fasta GAAAGUCGCCAAA--AAGUGGCGGAAUGCUCUCGAA----------ACCA b.16.m.M.polymorpha.fasta GAAAGUCGCCAGCUCAACUGGCGGAAUGCUUUCAAA----------ACCA b.16.m.N.olivacea.fasta CAAAGCCUCAGGAAACCCCUGAGAACGUCUUUCAAA----------ACGG d.16.b.G.liquefaciens.fasta GAAAUUCCUGGGCUUAACCUGGGGGCUGCAUUUGAU----------ACGU d.16.b.B.japonicum.fasta GAAAUCCUGGAGCUCAACUCCAGAACUGCCUUUGAU----------ACUG d.16.b.R.acidophilus.fasta GAAAUGCCGGAGCUCAACUUCGGAACUGCCUUUGAU----------ACUG d.16.b.A.caulinodans.fasta UGAAAGCCUGAGCUCAACUCCAGAACUGCCCUUGAU----------ACUG d.16.b.B.quintana.fasta GAAAUCCCAGGGCUCAACCCUGGAACUGCCUUUGAU----------ACUG d.16.b.M.loti.fasta GAAAUCCCGGGGCUCAACCCCGGAACUGCCUUUGAU----------ACUG d.16.b.A.tumefaciens.fasta GAAAUCCCAGAGCUCAACUCUGGAACUGCCUUUGAU----------ACUG d.16.b.B.bacilliformis.fasta GAAAUCCCAGGGCUCAACCUUGGAACUGCCUUUGAU----------ACUG d.16.b.B.henselae.fasta GAAAUCCCAGGGCUCAACCCUGGAACUGCCUUUGAU----------ACUG d.16.b.B.melitensis.fasta GAAAUCCCGGGGCUCAACCCCGGAACUGCCUUUGAU----------ACUG d.16.b.R.orientis.fasta GAAAUCCCGAGGCUCAACCUCGGAACUGCCUUUGAU----------ACUG d.16.b.Methylobacterium.sp.fas GAAAGCCUGUGGCUCAACCACAGAAUGUCCUUCGAU----------ACUG d.16.b.R.bellii.fasta GAAAGCCCGGGGCUUAACCUCGGAAUUGCUUUCAAA----------ACUA d.16.b.R.felis.URRWXCal2.fasta GAAAGCCCGGGGCUUAACCUCGGAAUUGCUUUCAAA----------ACUA d.16.b.R.prowazekii.fasta GAAAGCCCGGGGCUUAACCUCGGAAUUGCUUUCAAA----------ACUA d.16.b.R.prowazekii.GEN.fasta GAAAGCCCGGGGCUUAACCUCGGAAUUGCUUUCAAA----------ACUA d.16.b.R.rickettsii.fasta GAAAGCCCGGGGCUUAACCUCGGAAUUGCUUUCAAA----------ACUA d.16.b.A.calcoaceticus.fasta GAAAUCCCCGAGCUUAACUUGGGAAUUGCAUUCGAU----------ACUG d.16.b.P.pacificensis.fasta GAAAUCCCCGGGCUUAACCUGGGAACUGCAUCUGAA----------ACUG d.16.b.C.marismortui.fasta GAAAGCCCCGGGCUCAACCUGGGAACGGCAUCCGGA----------ACGG d.16.b.H.halodenitrificans.fas GAAAGCCCCGGGCUCAACCUGGGAACAGCAUCCGGA----------ACUG d.16.b.P.aeruginosa.fasta GAAAUCCCCGGGCUCAACCUGGGAACUGCAUCCNAA----------ACUA d.16.b.P.aeruginosa.GEN.fasta GAAAUCCCCGGGCUCAACCUGGGAACUGCAUCCAAA----------ACUA d.16.b.Pseudomonas.sp.fasta GAAAUCCCCGGGCUCAACCUGGGAACUGCAUCCAUA----------ACUG d.16.b.P.putida.fasta GAAAGCCCCGGGCUCAACCUGGGAACUGCAUCCAAA----------ACUG d.16.b.C.burnetii.fasta GAAAGCCCUGGGCUNNNCCUGGGAAUUGCACCCGAU----------ACUG d.16.b.M.capsulatus.fasta GAAAGCCCUGGGCUUAACCUGGGAACUGCAUUUGAU----------ACUG d.16.b.L.pneumophila.1.fasta GAAAUUCCUGGGCUUAACCUGGGACGGUCAGAUAAU----------ACUG d.16.b.L.pneumophila.2.fasta GAAAUUCCUGGGCUUAACCUGGGACGGUCAGAUAAU----------ACUG d.16.b.A.vinosum.fasta GAAAGCCCCGGGCUCAACCUGGGAACUGCAGUGGAU----------ACUG d.16.b.Beggiatoa.sp.fasta GAAAUCCUCGAGCUCAACUUGAGAAUUGCAUUUGAA----------ACUG d.16.b.A.hydrophila.fasta GAAAGCCCCGGGCUCAACCUGGGAAUUGCAUUUAAA----------ACUG d.16.b.S.putrefaciens.fasta GAAAGCCCUGGGCUCAACCUAGGAAUAGCAUUUCGA----------ACUG d.16.b.C.freundii.fasta GAAAUCCCCGGGCUCAACCUGGGNACUGCAUCCNNA----------ACUG d.16.b.S.dysenteriae.1.fasta GAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAU----------ACUG d.16.b.K.pneumoniae.fasta GAAAUCCCCGGGCUCAACCUGGGAACUGCAUUCGAA----------ACUG d.16.b.P.shigelloides.fasta GAAAUCCCCGAGCUCAACUUGGGAACUGCAUUUGAA----------ACUG d.16.b.Y.pestis.fasta GAAAUCCCCGCGCUUAACGUGGGAACUGCAUUUGAA----------ACUG d.16.b.Y.pseudotuberculosis.fa GAAAUCCCCGCGCUUAACGUGGGAACUGCAUUUGAA----------ACUG d.16.b.S.dysenteriae.2.fasta GAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAU----------ACUG d.16.b.E.coli.0157G.GEN.fasta GAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAU----------ACUG d.16.b.E.coli.EDL.GEN.fasta GAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAU----------ACUG d.16.b.E.coli.fasta GAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAU----------ACUG d.16.b.E.coli.K12.GEN.fasta GAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAU----------ACUG h.16.b.E.coli.hlxnum.fasta GAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAU----------ACUG m.16.b.E.coli.mhg.fasta GAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAU----------ACUG s.16.b.E.coli.schem.fasta GAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAU----------ACUG d.16.b.S.typhimurium.fasta GAAAUCCCCGGGCUCAACCUGGGAACUGCAUUCGAA----------ACUG d.16.b.S.marcescens.fasta GAAAUCCCCGGGCUCAACCUGGGNACUGCAUUUGAA----------ACUG d.16.b.E.tarda.fasta GAAAUCCCCGGGCUUAACCUGGGAACUGCAUCCAAG----------ACUG d.16.b.P.vulgaris.fasta GAAAGCCCCGAGCUUAACUUGGGAAUUGCAUCUGAA----------ACUG d.16.b.V.cholerae4.fasta GAAAGCCCUGGGCUCAACCUAGGAAUCGCAUUUGAA----------ACUG d.16.b.V.cholerae5.fasta GAAAGCCCUGGGCUCAACCUAGGAAUCGCAUUUGAA----------ACUG d.16.b.V.cholerae2.fasta GAAAGCCCUGGGCUCAACCUAGGAAUCGCAUUUGAA----------ACUG d.16.b.V.cholerae6.fasta GAAAGCCCUGGGCUCAACCUAGGAAUCGCAUUUGAA----------ACUG d.16.b.V.cholerae.fasta GAAAGCCCUGGGCUCAACCUAGGAAUCGCAUUUGAA----------ACUG d.16.b.V.cholerae.GEN.fasta GAAAGCCCUGGGCUCAACCUAGGAAUCGCAUUUGAA----------ACUG d.16.b.V.parahaemolyticus.fast GAAAGCCCGGGGCUCAACCUCGGAAUUGCAUUUGAA----------ACUG d.16.b.H.influenzae7.fasta GAAAGCCCUGGGCUUAACCUAGGAAUUGCAUUUCAG----------ACUG d.16.b.H.influenzae8.fasta GAAAGCCCCGGGCUUAACCUGGGAAUUGCAUUUCAG----------ACUG d.16.b.H.influenzae6.fasta GAAAGCCCUGGGCUUAACCUGGGAAUUGCAUUUCAG----------ACUG d.16.b.H.influenz.fasta GAAAGCCCCGGGCUUAACCUGGGNAUUGCAUUUCAG----------ACUG d.16.b.H.influenzae.fasta GAAAGCCCUGGGCUUAACCUAGGAAUUGCAUUUCAG----------ACUG d.16.b.P.multocida.fasta GAAAUCCCCGAGCUUAACUUGGGAACUGCAUUUCAG----------ACUG d.16.b.P.multocida.GEN.fasta GAAAUCCCCGAGCUUAACUUGGGAACUGCAUUUCAG----------ACUG d.16.b.X.albilineans.fasta GAAAGCCCUGGGCUCAACCUGGGAAUUGCAGYGGAU----------ACUG d.16.b.X.campestris.fasta GAAAGCCCUGGGCUCAACCUGGGAAUUGCAGUGGAU----------ACUG d.16.b.X.fastidiosa.GEN.fasta GAAAGCCCUGGGCUUAACCUGGGAAUGGCAGUGGAU----------ACUG d.16.b.D.nodosus.fasta GAAAUCCCUGGGCUCAACCUAGGAAUUGCAUUUGAA----------ACCG d.16.b.F.tularensis.fasta GAAAGCCCAGGGCUCAACCUUGGAACUGCAUUUGAU----------ACUG d.16.b.B.parapertussis.fasta GAAAUCCCAGGGCUUAACCUUGGAACUGCAUUUUUA----------ACUA d.16.b.B.pertussis.fasta GAAAUCCCAGGGCUUAACCUUGGAACUGCAUUUUUA----------ACUA d.16.b.B.bronchiseptica2.fasta GAAAUCCCAGGGCUUAACCUUGGAACUGCAUUUUUA----------ACUA d.16.b.u.proteobacterium.fasta GAAAUCCCCGGGCUUAACCUGGGAACUGCAUUGGUG----------ACUG d.16.b.B.mallei.fasta GAAAUCCCCGGGCUCAACCUGGGAACUGCAUUGGUG----------ACUG d.16.b.Burkholderia.sp.fasta GAAAUCCCCGGGCUUAACCUGGGAACUGCAUUUGUG----------ACUG d.16.b.N.meningitidis.MD58.GEN GAAAUCCCCGGGCUCAACCCGGGAACUGCGUUCUGA----------ACUG d.16.b.N.meningitidis.Z2491.GE GAAAUCCCCGGGCUCAACCCGGGAACUGCGUUCUGA----------ACUG d.16.b.N.gonorrhoeae.fasta GAAAUCCCCGGGCUCAACCCGGGAACUGCGUUCUGA----------ACUG d.16.b.C.testosteroni.fasta GAAAUCCCCGGGCUCAACCUGGGAACUGCCAUUGUG----------ACUG d.16.b.D.desulfuricans.fasta GAAAUCCCACGGCUCAACCGUGGAACUGCCUUUGAU----------ACUG d.16.b.M.xanthus.fasta GAAAGCCCUCAGCUCAACUGAGGAAGUGCGCCCGAA----------ACUG d.16.b.D.thermophilus.fasta CAAAGCCUACGGCUCAACCGUAGUAAGGCCUCAGAU----------ACUA d.16.b.B.burgdorferi.fasta AAAAUACCACAGCUCAACUGUGGACCUAUGUUGGAA----------ACUA d.16.b.B.burgdorferi.GEN.fasta AAAAUACCACAGCUCAACUGUGGACCUAUGUUGGAA----------ACUA d.16.b.B.hermsii.fasta AAAAUACCACAGCUCAACUGUGGGAAUAUGCUGGAA----------ACUG d.16.b.S.aurantia.fasta GAAAUCUCCGGGCUUAACUCGGAAUCCGCGUUGGAA----------ACUG d.16.b.T.pallidum.A.fasta GAAAUCCCCGAGCUCAACUUGGGAACUGCACUGGGU----------ACUG d.16.b.L.illini.fasta GAAAACUGAGGGCUCAACCCUCAGCCUGCUUUCGAA----------ACUG d.16.b.L.interrogans.fasta GAAAACUGCGGGCUCAACUCGCAGCCUGCACUUGAA----------ACUA d.16.b.C.trachomatis.GEN.fasta CAAAGAUCGGGGCUCAACCCCGAGUCGGCAUCUAAU----------ACUA d.16.b.C.trachomatis.L2.fasta CAAAGAUCGGGGCUCAACCCCGAGUCGGCAUCUAAU----------ACUA d.16.b.C.muridarum.fasta CAAAUCUCGGGGCUCAACCCCGAAUCGGCAUCUAAA----------ACUA d.16.b.C.pneumoniae.AR39.fasta UAAAUUUUGGGGCUCAACCCCAAGUCAGCAUUUAAA----------ACUA d.16.b.C.pneumoniae.fasta UAAAUUUUGGGGCUCAACCCCAAGUCAGCAUUUAAA----------ACUA d.16.b.C.pneumoniae.J138.fasta UAAAUUUUGGGGCUCAACCCCAAGUCAGCAUUUAAA----------ACUA d.16.b.C.pneumoniae.CWL029.fas UAAAUUUUGGGGCUCAACCCCAAGUCAGCAUUUAAA----------ACUA d.16.b.C.psittaci.fasta UAAAUCUUGGGGCUCAACCCCAAGCCAGCAUCUAAU----------ACUA d.16.b.D.radiodurans.1.fasta UAAAGACCGAGGCUCAACCUCGGGAGUGGACUGGAU----------ACUG d.16.b.D.radiodurans.GEN.fasta UAAAGACCGGGGCUCAACCUCGGGGAUGGACUGGAU----------ACUG d.16.b.B.fragilis.fasta GAAAGUUUGCGGCUCAACCGUAAAAUUGCAGCUGAU----------ACUG d.16.b.P.gingivalis.fasta GAAACCUGAGCGCUCAACGUUCAGCCUGCCGUUGAA----------ACUG d.16.b.C.vibrioforme.fasta UAAAUCCAUGUGCUUAACACAUGACAUGCUUCCGAU----------ACUG d.16.b.C.jejuni.fasta GAAAUCUAAUGGCUUAACCAUUAAACUGCUUGGGAA----------ACUG d.16.b.C.jejuni.GEN.fasta GAAAUCUAAUGGCUUAACCAUUAAACUGCUUGGGAA----------ACUG d.16.b.C.sputorum.fasta GAAAUCUAGUAGCUUAACUACUAAACUGCUUGGGAA----------ACUA d.16.b.H.pylori.26695.GEN.fast GAAAUCCUAUGGCUUAACCAUAGAACUGCAUUUGAR----------ACUA d.16.b.H.pylori.J99.GEN.fasta GAAAUCCUAUGGCUUAACCAUAGAACUGCAUUUGAA----------ACUA d.16.b.H.pylori2.fasta GAAAUCCUAUGGCUUAACCAUAGAACUGCAUUUGAA----------ACUA d.16.b.A.capsulatum.fasta GAAAUCUUCGGGCUCAACUCGAAGUCUGCAUCGAAA----------ACUG d.16.b.H.foetida.fasta GCAAUCCCCGGGCUCAACCUGGGAACUGCAUCUCAU----------ACUG d.16.b.A.globiformis.fasta GAAAGUCCGGGGCUCAACUCCGGAUCUGCGGUGGGU----------ACGG d.16.b.M.luteus.fasta GAAAGUYCGGGGCUUAACCCCGGAUCUGCGGUGGGU----------ACNG d.16.b.Frankia.sp.fasta GAAAACCCGGGGCUCAACUCCGGGCCUGCAGUCGAU----------ACGG d.16.b.S.bottropensis.fasta GAAAGCCCGGGGCUUAACCCCGGGUCUGCAUUCGAU----------ACGG d.16.b.S.scabiei.fasta GAAAGCCCGGGGCUUAACCCCGGGUCUGCAUUCGAU----------ACGG d.16.b.S.neyagawaensis.fasta GAAAGCCCGGGGCUUAACCCCGGGUCUGCAUUCGAU----------ACGG d.16.b.S.diastatochromogenes.f GAAAGCCCGGGGCUUAACCCCGGGUCUGCAUUCGAU----------ACGG d.16.b.Streptomyces.sp.fasta GAAAGCCCGGGGCUUAACCCCGGGUCUGCAUUCGAU----------ACGG d.16.b.S.acidiscabies.fasta GAAAGCCCGGGGCUUAACCCCGGGUCUGCAUUCGAU----------ACGG d.16.b.S.griseus.fasta GAAAGCCCGGGGCUUAACCCCGGGUCUGCAUUCGAU----------ACGG d.16.b.S.ornatus.fasta GAAAGCCCGGGGCUUAACCCCGGGUCUGCAUUCGAU----------ACGG d.16.b.S.subrutilus.fasta GAAAGCCCGAGGCUUAACCUCGGGUCUGCAUUCGAU----------ACGG d.16.b.S.bikiniensis.fasta GAAAGCCCGGGGCUUAACCCCGGGUCUGCAUCCGAU----------ACGG d.16.b.S.galbus.fasta GAAAGCCCGGGGCUUAACCCCGGGUCUGCAUUCGAU----------ACGG d.16.b.S.hygroscopicus.fasta GAAAGCCCGGGGCUUAACCCCGGGUCUGCAUUCGAU----------ACGG d.16.b.S.lincolnensis.fasta GAAAGCCCGGGGCUUAACCCCGGGUCUGCAUUCGAU----------ACGG d.16.b.S.coelicolor.fasta GAAAGCCCGGGGCUUAACCCCGCCACUGCAGUCGAU----------ACGG d.16.b.S.tendae.fasta GAAAGCCCGGGGCUUAACCCCGGGUCUGCAGUCGAU----------ACGG d.16.b.S.ambofaciens.fasta GAAAGCCCGGGGCUUAACCCCGGGUCUGCAGUCGAU----------ACGG d.16.b.S.eurythermus.fasta GAAAGCCCGGGGCUUAACCCCGGGUCUGCAGUCGAU----------ACGG d.16.b.S.nodosus.fasta GAAAGCCCGGGGCUUAACCCCGGGUCUGCAGUCGAU----------ACGG d.16.b.S.sampsonii.fasta GAAAGCCCGGGGCUUAACCCCGGGUCUGCAGUCGAU----------ACGG d.16.b.S.glaucescens.fasta GAAAGCCCGGGGCUUAACCCCGGGUCUGCAUUCGAU----------ACGG d.16.b.S.pseudogriseolus.fasta GAAAGCCCGGGGCUUAACCCCGGGUCUGCAGUCGAU----------ACGG d.16.b.S.caelestis.fasta GAAAGCCCGGGGCUUAACCCCGGGUCUGCAGUCGAU----------ACGG d.16.b.S.bluensis.fasta GAAAGACCGGGGCUUAACUCCGGUUCUGCAUUCGAU----------ACGG d.16.b.S.espinosus.fasta GAAAGCCCGGGGCUCAACCCCGGGUCUGCAGUCGAU----------ACGG d.16.b.S.mashuensis.fasta GAAAGCCCGGGGCUUAACCCCGGGUCUGCAUUCGAU----------ACGG d.16.b.S.rimosus.fasta GAAAGCCCGGGGCUUAACCCCGGGUCUGCAUUCGAU----------ACGG d.16.b.S.limosus.fasta GAAAGCCCGGGGCUUAACCCCGGGUCUGCAGUCGAU----------ACGG d.16.b.S.odorifer.fasta GAAAGCCCGGGGCUUAACCCCGGGUCUGCAGUCGAU----------ACGG d.16.b.S.felleus.fasta GAAAGCCCGGGGCUUAACCCCGGGUCUGCAGUCGAU----------ACGG d.16.b.S.albidoflavus.fasta GAAAGCCCGGGGCUUAACCCCGGGUCUGCAGUCGAU----------ACGG d.16.b.S.gougerotii.fasta GAAAGCCCGGGGCUUAACCCCGGGUCUGCAGUCGAU----------ACGG d.16.b.S.rutgersensis.fasta GAAAGCCCGGGGCUUAACCCCGGGUCUGCAGUCGAU----------ACGG d.16.b.S.intermedius.fasta GAAAGCCCGGGGCUUAACCCCGGGUCUGCAGUCGAU----------ACGG d.16.b.S.thermodiastaticus.fas GAAAGCCCGGGGCUUAACUCCGGCUCUGCAGUCGAU----------ACGG d.16.b.S.thermoviolaceus.fasta GAAAGCCCGGGGCUUAACUCCGGGUCUGCAGUCGAU----------ACGG d.16.b.S.thermovulgaris.1.fast GAAAGCCCGGGGCUUAACUCCGGGUCUGCAGUCGAU----------ACGG d.16.b.S.thermovulgaris.2.fast GAAGGCCCGGGGCUUAACUCCGGGUCUGCAGUCGAU----------ACGG d.16.b.S.macrosporus.fasta GAAAGCCCGGGGCUUAACCCCGGGUCGGCAUUCGAU----------ACGG d.16.b.S.megasporus.fasta GAAAGCCCGGGGCUUAACCCCGGGUCGGCAUUCGAU----------ACGG d.16.b.S.thermolineatus.fasta GAAAGCCCGGGGCUUAACCCCGGGUCUGCGGUCGAU----------ACGG d.16.b.M.tuberculosis.2.fasta GAAAUCUCACGGCUUAACUGUGAGCGUGCGGGCGAU----------ACGG d.16.b.M.tuberculosis.3.fasta GAAAUCUCACGGCUUAACUGUGAGCGUGCGGGCGAU----------ACGG d.16.b.M.avium.fasta GAAAUCUCACGGCUUAACUGUGAGCGUGCGNGCGAU----------ACGG d.16.b.M.leprae.fasta GAAAUCUCACGGCUUAACUGUGAGCGUGCGGGCGAU----------ACGG d.16.b.M.leprae.GEN.fasta GAAAUCUCACGGCUUAACUGUGAGCGUGCGGGCGAU----------ACGG d.16.b.M.tuberculosis.CDC1551. GAAAUCUCACGGCUUAACUGUGAGCGUGCGGGCGAU----------ACGG d.16.b.M.tuberculosis.GEN.fast GAAAUCUCACGGCUUAACUGUGAGCGUGCGGGCGAU----------ACGG d.16.b.N.asteroides.fasta GAAAACUUGGGGCUCAACCCCAAGCUUGCGGGCGAU----------ACGG d.16.b.R.erythropolis.fasta GAAAACCAGCAGCUCAACUGCUGGCUUGCAGGCGAU----------ACGG d.16.b.C.diphtheriae.fasta GAAAUUCCGGGGCUUAACUUCGGGCGUGCAGGCGAU----------ACGG d.16.b.A.israelii.fasta GAAAUCCUCUGGCUCAGCUGGGGGCGUGCGGUGGGU----------ACGG d.16.b.B.hyodysenteriae.fasta GAAAGACCGAAGCUCAACUUCGGAAACGCCUCGGAU----------ACUG d.16.b.G.subterranea.fasta GAAAUGUCACUGCUCAACGGUGUCAGUGCGCAUG-A---------AACUG d.16.b.P.miotherma.fasta GAAAAG--AUUGCUCAACGAUUGGCUUGCGGAUG-A---------AACUN d.16.b.B.andersonii.fasta GAAAGACCGGGNCUCAACUUCGGGAACGCGCUCG-G---------AACCG d.16.b.H.aurantiacus.fasta GAAAGCGC-CGGAGUAAUGCCGGCCAGGUCGCGGCA---------GACAC d.16.b.Leptospirillium.sp.fast GAAAGGCCGUGGCUUAACCAUGGGAAUGCCAAAG-A---------GACUG d.16.b.A.aeolicus.fasta CAAAGCCCACGGCUCAACCGUGGACCGGCAUCCCGA----------ACUG d.16.b.A.pyrophilus.fasta CAAAGCCCACGGCUCAACCGUGGAAUGGCAUCCCGA----------ACUG d.16.b.T.maritima.fasta GAAAUCCCACGGCUCAACCGUGGGGCUGCAUCCGAA----------ACUA d.16.b.T.maritima.GEN.fasta GAAAUCCCACGGCUCAACCGUGGGGCUGCAUCCGAA----------ACUA n.16.b.T.thermophilus.2.num.fa GAAAGACCACGGCUCAACCGUGGGGGAGCGUGGGAU----------ACGC s.16.b.T.thermophilus.2.schem. GAAAGACCACGGCUCAACCGUGGGGGAGCGUGGGAU----------ACGC d.16.b.T.thermophilus.2.fasta GAAAGACCACGGCUCAACCGUGGGGGAGCGUGGGAU----------ACGC s.16.b.T.thermophilus.1.schem. GAAAGACCACGGCUCAACCGUGGGGGAGCGUGGGAU----------ACGC n.16.b.T.thermophilus.1.num.fa GAAAGACCACGGCUCAACCGUGGGGGAGCGUGGGAU----------ACGC d.16.b.T.thermophilus.1.fasta GAAAGACCACGGCUCAACCGUGGGGGAGCGUGGGAU----------ACGC d.16.b.T.aquaticus.fasta GAAAGGCCACGGCUCAACCGUGGAGGAGCGUGGGAU----------ACGC d.16.b.T.roseum.fasta GAAAGUCCCCGGCUCAACCGGGGAGGGUCGCGCGGG----------ACGG d.16.b.P.marina.fasta GAAAUCCCACGGCUCAACCGUGGAACUGCGCUUGAA----------ACUG d.16.b.P.staleyi.fasta GAAAUCCCUCGGCUCAACCGAGGAACUGCGCUCCAA----------ACUA d.16.b.P.Schlesner.fasta GAAAGCCCUCAGCUCAACUGAGGAACAGCGCUCCAA----------ACUA d.16.b.G.obscuriglobus.1.fasta GAAAUGCCGCGGCUCAACCGCGGAACGGCCUCAGAU----------ACUG d.16.b.I.pallida.fasta GAAAUNCCCCGGCUCAACCGGGNNAGCGGCGUCGAA----------ACGG d.16.a.P.abyssi.fasta GAAAUCCCACGGCUCAACCGUGGGGCUCGCUGGGGA---------UACUG d.16.a.P.horikoshii.fasta GAAAUCCCACGGCUCAACCGUGGGGCUCGCUGGGGA---------UACUG d.16.a.P.furiosus.fasta GAAAUCCCACGGCUCAACCGUGGGGCUCGCUGGGGA---------UACUG d.16.a.T.celer.fasta GAAAUCCCACGGCUCAACCGUGGGGCUUGCUGGGGA---------UACUG d.16.a.A.fulgidus.fasta GAAAUCUGGCGGCUUAACCGUCAGACUGCCGGAGGA---------UACUG d.16.a.N.equitans.fasta GAAAUCCUCGGGCUCAACCCGAGGGCGCGCCGGAGC---------UACUA d.16.a.A.pernix.K1.fasta UAAAGCCCCGGGCUCAACCCGGGGAGUGG-CGGGGA---------UACUG d.16.a.P.occultum.fasta UAAAGCCCCGGGCUCAACCCGGGGAGUGG-GGGGGA---------UACUG d.16.a.T.tenax.fasta GAAAUCCCCAGGCUCAACCUGGGGGCAGG-GGGCGA---------UACUG d.16.a.S.acidocaldarius.fasta UAAAGUCCCCGGCUCAACCGGGGAACUGG-GGGCGA---------UACUG d.16.a.S.solfataricus.fasta UAAAGUCCCCGGCUCAACCGGGGAACUGG-GGGCGA---------UACUG d.16.a.S.solfataricus.2.fasta UAAAGACCCCGGCUCAACCGGGGGAAUGG-GGGUGA---------UACUG d.16.a.M.thermautotrophicus.1. GAAAUCCCACAGCUUAACUGUGGGAAUUGCUGGAGA---------UACUA d.16.a.M.thermautotrophicus.2. GAAAUCCCACAGCUUAACUGUGGGAAUUGCUGGAGA---------UACUA d.16.a.M.formicicum.fasta GAAAUCUCACGGCUUAACCGUGAGAAUUGCUGGAGA---------UACUA d.16.a.M.vannielii.fasta UAAAUUCUCUGGCUUAACCA-GAGGACUGGCAGGGA---------UACUG d.16.a.H.marismortui.rrnA.fast GAAAUCGACGCGCUCAACGCGUCGGCGUCCAGCGGA---------AACUG d.16.a.H.marismortui.rrnB.fast GAAAUCGACCAGCUCAACUGGUCGGCGUCCGGUGGA---------AACUA d.16.a.Halobacterium.sp.fasta GAAAUCUGUCCGCUUAACGGGCAGGCGUCCAGCGGA---------AACUG d.16.a.N.bangense.fasta GAAAUCUGUGUGCCUAACACACAGGCGUCCGGUGGA---------AACUG d.16.a.N.innermongoliae.fasta GAAAUCUCUUCGCUUAACGAAGAGGCGUCCGGUGGA---------AACUG d.16.a.H.volcanii.fasta GAAAUCCGCCAGCUCAACUGGCGGGCGUCCGGUGAA---------AACCA d.16.a.M.hungatei.fasta GAAAUCCGCCGGCUUAACCGGUGGGCGUUCAGGGGA---------AACUG d.16.a.P.torridus.fasta UAAAUUCUAGCGCUUAAC-GUUAGAUCUCCUGGAGA---------GACUG d.16.a.T.acidophilum.fasta UAAAUUCUUCCGCUUAAC-GGAAGAACUUCUGAAGA---------GACUG a.16.e.G.ardeae.fasta ----------------------------------------------AGGA d.16.e.G.intestinalis.fasta --GCCGCGGCAGCCCC-----------------------------GAGGA a.16.e.G.muris.fasta ---------------------------------------------AAGGU d.16.e.A.bracteata.fasta -------------------------------------------------G d.16.e.Glomus.sp.W3349.fasta --ACCGUAAUGAUU-------------------------------AAUAG d.16.e.S.cerradensis.fasta --ACCGUAAUGAUU-------------------------------AAUAG a.16.e.G.intraradices.fasta --GACGUAAUGAUU-------------------------------AAUAG d.16.e.S.culisetae.fasta --GAGGUAAUGAUU-------------------------------AAUAG a.16.e.P.balamuthi.fasta CAGUCGUUUUGGUUGUAGAAAUGCAAUCGAAACGUUAAACCAAAUAAUAG d.16.e.A.flavus.fasta --GCCGUAAUGAUU-------------------------------AAUAG d.16.e.T.caries.fasta --GCCGUAAUGAUU-------------------------------AAUAG d.16.e.M.circinelloides.fasta --UAAGUAAUGAUG-------------------------------AAUAG d.16.e.M.racemosus.fasta --UAAGUAAUGAUG-------------------------------AAUAG d.16.e.R.oryzae.fasta --UCAGUAAUGAUG-------------------------------AAUAG a.16.e.M.edulis.fasta --GAGGUAAUGAUU-------------------------------AAGAG a.16.e.P.magellanicus.fasta --GAGGUAAUGAUU-------------------------------AUGAG b.16.e.E.granulosus.fasta --GAAGUAAUGAUC-------------------------------AAAAG d.16.e.D.melanogaster.fasta --GAGGUAAUGAUU-------------------------------AAUAG b.16.e.C.koreana.fasta --GAGGUAAUGAUU-------------------------------AAUAG b.16.e.A.australis.fasta --GAGGAAAUGAUU-------------------------------AAGAG b.16.e.O.utahensis.fasta --GAGGUAAUGAUU-------------------------------AAUAG b.16.e.A.salina.fasta --GAGGUAAUGGUU-------------------------------AACAG d.16.e.M.musculus.fasta --GAGGCCAUGAUU-------------------------------AAGAG d.16.e.R.norvegicus.fasta --GAGGCCAUGAUU-------------------------------AAGAG d.16.e.H.sapiens.fasta --GAGGCCAUGAUU-------------------------------AAGAG d.16.e.O.cuniculus.fasta --GAGGCCAUGAUU-------------------------------AAGAG d.16.e.X.borealis.fasta --GGGGCCAUGAUU-------------------------------AAGAG d.16.e.X.laevis.fasta --GGGGCCAUGAUU-------------------------------AAGAG d.16.e.A.castellanii.fasta --GGGUAA-UGAUU-------------------------------AAUAG d.16.e.B.mandrillaris.fasta --GAGAAA-UGAUU-------------------------------GAUAG d.16.e.P.falciparum.A.fasta --UAGUUA-CGAUU-------------------------------AAUAG d.16.e.P.falciparum.S.fasta --UAGUUA-CGAUU-------------------------------AAUAG d.16.e.P.vivax.A.fasta --UAGUUA-CGAUU-------------------------------AAUAG d.16.e.P.vivax.O.fasta --UAGUUA-CGAUU-------------------------------AAUUG d.16.e.P.vivax.S.fasta --UAGUUA-CGAUU-------------------------------AAUAG d.16.e.E.histolytica.fasta --AAG-----GAUU-------------------------------AAAAG d.16.e.I.hoferi.fasta --AGAUAA-UGAUU-------------------------------AAUAG d.16.e.Dermocystidium.sp.fasta --AAGUAA-UGAUU-------------------------------AAUAG d.16.e.S.destruens.fasta --AAGUAA-UGAUU-------------------------------AAUAG d.16.e.A.unguiculata.fasta --AAGUAA-UGAUU-------------------------------AAUAG d.16.e.D.grandis.fasta --AAGUAA-UGAUU-------------------------------AAUAG d.16.e.A.macrogynus.fasta --GAGUAA-UGAUU-------------------------------AAUAG d.16.e.B.emersonii.fasta --GAGUAAAUGAUU-------------------------------AAUAG d.16.e.C.albicans.fasta ----------GAUU-------------------------------AAUAG d.16.e.S.cerevisiae.fasta ----------GAUU-------------------------------AAUAG d.16.e.N.crassa.fasta ----------GAUU-------------------------------AAUAG d.16.e.P.anserina.fasta ----------GAUU-------------------------------AAUAG d.16.e.C.immitis.fasta ----------GAUU-------------------------------AAUAG d.16.e.L.major.fasta --CCUCUAGGAAUG-------------------------------AAGGA d.16.e.T.cruzi.fasta --CAUCCAGGAAUG-------------------------------AAGGA d.16.e.T.brucei.fasta --CUUCCAGGAAUG-------------------------------AAGGA d.16.e.P.carinii.fasta ----------GAUU-------------------------------AAUAG d.16.e.C.neoformans.fasta --CCGUAA-UGAUU-------------------------------AAUAG d.16.e.Fungus.sp.QPX.fasta --CCGUAA-UGAUU-------------------------------AAUAG d.16.e.U.maydis.fasta --CCGUAA-UGAUU-------------------------------AAAAG d.16.e.M.leidyi.fasta --AAGUAA-UGAUU-------------------------------AAUAG d.16.e.T.cystophora.fasta --ACGUAA-UGAUU-------------------------------AAGAG d.16.e.M.prolifera.fasta --AAGUAA-UGAUU-------------------------------AAGAG d.16.e.P.haeckeli.fasta --AGAUCA-UGAUU-------------------------------AAUAA d.16.e.E.rotunda.fasta --AAGUAA-UGAUU-------------------------------GAUAG d.16.e.P.chromatophora.fasta --AAGUAA-UGAUU-------------------------------GAUAG d.16.e.A.majus.fasta --GAGUAA-UGAUU-------------------------------AACAG d.16.e.S.indicum.fasta --GAGUAA-UGAUU-------------------------------AACAG d.16.e.D.grandiflora.fasta --GAGUAA-UGAUU-------------------------------AACAG d.16.e.Pla.lanceolata.fasta --GAGUAA-UGAUU-------------------------------AACAG d.16.e.N.tabacum.fasta --GAGUAA-UGAUU-------------------------------AACAG d.16.e.A.thaliana.fasta --GAGUAA-UGAUU-------------------------------AACAG d.16.e.S.alba.fasta --GAGUAA-UGAUU-------------------------------AACAG d.16.e.S.tuberosum.fasta --GAGUAA-UGAUU-------------------------------AACAG d.16.e.F.x.ananassa.fasta --GAGUAA-UGAUU-------------------------------AACAG d.16.e.G.max.fasta --GAGUAA-UGAUU-------------------------------AACAG d.16.e.O.sativa.fasta --GAGUAA-UGAUU-------------------------------AAUAG d.16.e.Z.mays.fasta --GAGUAA-UGAUU-------------------------------AAUAG d.16.e.A.verticilliflorum.fast --GAGUAA-UGAUU-------------------------------AAUAG d.16.e.G.spirotaenia.fasta --GAGUAA-UGAUU-------------------------------AAUAG d.16.e.Staurastrum.sp.M752.fas --GAGUAA-UGAUU-------------------------------AAUAG d.16.e.C.paradoxa.fasta --GGGUAA-UGAUU-------------------------------AAUAG d.16.e.G.nostochinearum.fasta --AGGUAA-UGAUU-------------------------------AAUAG d.16.e.G.wittrockiana.fasta --GGGUAA-UGGUU-------------------------------AAUAG d.16.e.C.luteoviridis.fasta --GAGUAA-UGAUU-------------------------------AACAG d.16.e.O.longa.fasta --AAGUAA-UGAUU-------------------------------AAUAG d.16.e.P.weissei.fasta --AAGUAA-UGAUU-------------------------------AAUAG d.16.e.C.citrina.fasta --AAGUAA-UGAUU-------------------------------AAUAG d.16.e.G.steinii.fasta --AAGUAA-UGAUU-------------------------------AAUAG d.16.e.Ple.lanceolata.fasta --AAGUAA-UGAUU-------------------------------AAUAG d.16.e.O.quadricornutus.fasta --AAGUAA-UGAUU-------------------------------AAUAG d.16.e.S.lemnae.fasta --AAGUAA-UGAUU-------------------------------AAUAG d.16.e.S.mytilus.fasta --AAGUAA-UGAUU-------------------------------AAUAG d.16.e.E.mobilis.fasta --AAGUAA-UGAUU-------------------------------AAUAG d.16.e.O.granulifera.1.fasta --AAGUAA-UGAUU-------------------------------AAUAG d.16.e.O.granulifera.2.fasta --AAGUAA-UGAUU-------------------------------AAUAG d.16.e.U.gallina.fasta --AAGUAA-UGAUU-------------------------------AAUAG d.16.e.U.pisces.fasta --AAGUAA-UGAUU-------------------------------AAUAG d.16.e.P.lepisma.fasta --AAGUAA-UGAUU-------------------------------AAUAG d.16.e.U.grandis.fasta --UAGUAA-UGAUU-------------------------------AAUAG d.16.e.B.coli.fasta -----UUG-CGAUU-------------------------------AAUAG d.16.e.E.aediculatus.fasta --CGGAGA-UGGUU-------------------------------AAUAG d.16.e.T.thermophila.fasta ----GUAA-UGAUU-------------------------------AAUAG d.16.e.Bangia.sp.NWT.fasta --AAGUAA-UGAUU-------------------------------AAUAG d.16.e.Bangia.sp.VIS7.fasta --GAGUAA-UGAUU-------------------------------AAUAG d.16.e.E.carnea.fasta --AAGUAA-UGAUU-------------------------------AAUAG d.16.e.R.parvula.fasta --AAGUAA-UGAUU-------------------------------AAUAG d.16.e.C.coeruleus.fasta --AAGUAA-UGAUU-------------------------------AAUAG d.16.e.P.aerugineum.1.fasta --AAGCA--UGGUC-------------------------------AAGAG d.16.e.R.maculata.fasta --AAGUAA-UGAUU-------------------------------AAUAG d.16.e.A.ambigua.fasta --AAACAA-UGAUU-------------------------------AAUAG d.16.e.A.baicalensis.fasta --AAAUAA-UGAUU-------------------------------AACAG d.16.e.S.nipponica.fasta --AGGUAA-UGAUU-------------------------------AAUAG d.16.e.C.radiatus.fasta --UGGUAA-UGAUU-------------------------------AAUAG d.16.e.C.criophilum.fasta --UAGUAA-UGAUU-------------------------------AACAG d.16.e.A.capitellata.fasta --AGGUAA-UGAUU-------------------------------AAUAG d.16.e.S.pupula.fasta --AGGUAA-UGAUU-------------------------------AAUAG d.16.e.T.antarctica.fasta --AGGUAA-UGAUU-------------------------------AAGAG d.16.e.E.triangulatum.fasta --AGGUAA-UGAUU-------------------------------AAUAG d.16.e.A.bongranii.fasta --AGGUAA-UGAUU-------------------------------AACAG d.16.e.Pseudogomphonema.sp.fas --AGGUAA-UGAUU-------------------------------AAUAG d.16.e.D.tenue.fasta --AGGUAA-UGAUU-------------------------------AAUAG d.16.e.G.marina.fasta --AAGUAA-UGAUU-------------------------------AAUAG d.16.e.Thalassionema.sp.fasta --AAGUAA-UGAUU-------------------------------AAUAG d.16.e.R.belgicae.fasta --AGGUAA-UGAUU-------------------------------AAUGG d.16.e.Undatella.sp.fasta --AGGUAA-UGAUU-------------------------------AAUAG d.16.e.C.belgica.fasta --AAGUAA-UGAUU-------------------------------AAUAG d.16.e.O.sinensis.fasta --UGGUAA-UGAUU-------------------------------AAUAG d.16.e.D.brightwellii.fasta --AGGUAA-UGAUU-------------------------------AAUAG d.16.e.L.undulatum.fasta --AGGUAA-UGAUU-------------------------------AAUAG d.16.e.T.eccentrica.fasta --AAGUAA-UGAUU-------------------------------AAUAG d.16.e.T.pseudonana.fasta --GGGUAA-UGAUU-------------------------------AAAAG d.16.e.S.costatum.fasta --AAGUAA-UGAUU-------------------------------AAUAG d.16.e.P.laevis.fasta --AGGUAA-UGGUU-------------------------------AACAG d.16.e.L.borealis.fasta --AAGUAACUGAUC-------------------------------AACAG d.16.e.P.pseudodenticulata.fas --AAGUAA-UGAUC-------------------------------AAUAG d.16.e.B.mediterranea.fasta --AGGUAA-UGAUU-------------------------------AAUAG d.16.e.B.pacifica.fasta --AGGUAA-UGAUU-------------------------------AAUAG d.16.e.L.minuta.fasta --AAUUAA-UGAUC-------------------------------AACAG d.16.e.L.danicus.fasta --AAAUAA-UGAUU-------------------------------AACAG d.16.e.Chaetoceros.sp.fasta --AGGUAA-UGAUG-------------------------------AAUAG d.16.e.A.invadans.fasta --GGGUAA-UGAUU-------------------------------AAUAG d.16.e.L.giganteum.fasta --GGGUAA-UGAUU-------------------------------AAUAG d.16.e.M.varians.fasta --UGAGUAAUGAUU-------------------------------AACAG d.16.e.B.hominis.fasta --AAGCAA--GGUU-------------------------------AAAAG d.16.e.P.marinus.fasta --GAAGUAAUGAUU-------------------------------AAUAG d.16.e.T.gondii.fasta --GAAGUAAUGAUU-------------------------------AAUAG d.16.e.A.fundyense.fasta --GAGGUAAUGAUU-------------------------------AAUAG d.16.e.B.bigemina.fasta --UGG-UAAUGGUU-------------------------------AAUAG d.16.e.B.canis.fasta --UGGGUAAUGGUU-------------------------------ANUAG d.16.e.Babesia.sp.OKD.fasta --UAG-UAAUGGUU-------------------------------AAUAG d.16.e.B.microti.1.fasta --GAG-UAAUGGUU-------------------------------AAUAG d.16.e.B.microti.2.fasta --GAG-UAAUGGUU-------------------------------AAUAG d.16.e.B.microti.3.fasta --GAG-UAAUGGUU-------------------------------AAUAG d.16.e.B.microti.4.fasta --GAG-UAAUGGUU-------------------------------AAUAG d.16.e.B.microti.5.fasta --GAG-UAAUGGUU-------------------------------AAUAG d.16.e.B.rodhaini.fasta --UAG-UAAUGGUU-------------------------------AAUAG d.16.e.B.gibsoni.fasta --AAG-UAAUGGUU-------------------------------AAUAG d.16.e.B.bovis.fasta --UGGGUAAUGGUU-------------------------------AAUAG d.16.e.J.libera.fasta --GAGGACACGGUU-------------------------------AAUAG d.16.e.R.americana.fasta --GAGGACAUGGUU-------------------------------AAUAG d.16.e.B.ostreae.fasta --GAGUAA-UGAUU-------------------------------GAUAG d.16.e.A.dasyae.fasta --GAGUAA-UGAUU-------------------------------AAGAG d.16.e.A.hermannii.fasta --GAGUAA-UGAUU-------------------------------AAGAG d.16.e.N.helminthoides.fasta --GAGUAA-UGAUU-------------------------------AAGAG d.16.e.B.gelatinosum.fasta --GAGUAA-UGAUU-------------------------------AAGAG d.16.e.N.tortuosa.fasta --GAGUAA-UGAUU-------------------------------AAGAG d.16.e.T.hispida.fasta --GAGUAA-UGAUU-------------------------------AAGAG d.16.e.T.violacea.4.fasta --GAGUAA-UGAUU-------------------------------AAGAG d.16.e.T.violacea.1.fasta --GAGUAA-UGAUU-------------------------------AAGAG d.16.e.T.violacea.2.fasta --GAGUAA-UGAUU-------------------------------AAGAG d.16.e.N.shawii.fasta --GAGUAA-UGAUU-------------------------------AAGAG d.16.e.B.investiens.fasta --GAGUAA-UGAUU-------------------------------AAGAG d.16.e.B.macrosporum.fasta --GAGUAA-UGAUU-------------------------------AAGAG d.16.e.A.plicata.fasta --AGGUAA-UGAUU-------------------------------AAGAG d.16.e.C.officinalis.fasta --GAGUAA-UGAUU-------------------------------AAGAG d.16.e.R.carriebowensis.fasta --GAGUAA-UGAUU-------------------------------AAGAG d.16.e.B.hamifera.fasta --GGGUAA-UGAUU-------------------------------AAGAG d.16.e.G.vagum.fasta --AGGUAA-UGAUU-------------------------------AAGAG d.16.e.C.crispus.fasta --GGGUAA-UGAUU-------------------------------AAGAG d.16.e.H.plana.fasta --GGGUAA-UGAUU-------------------------------AAGAG d.16.e.R.leptophylla.fasta --GGGUAA-UGAUU-------------------------------AAGAG d.16.e.P.pulvinata.fasta --GGGUAA-UGAUU-------------------------------AAGAG d.16.e.C.rubrum.fasta --AGGUAA-UGAUU-------------------------------AAGAG d.16.e.Gracilariopsis.sp.fasta --AGGUAA-UGAUU-------------------------------AACAG d.16.e.B.moritziana.fasta --AGGUAA-UGAUU-------------------------------AACAG d.16.e.H.rubra.fasta --GGGCAA-UGAUU-------------------------------AAGAG d.16.e.D.grisea.fasta --GGGGAA-UGAUA-------------------------------AAUAG d.16.e.N.fowleri.fasta --GGUACAGCGCUUGU-----------------------------AAUGG d.16.e.N.gruberi.fasta --GGUACAGCGCUUGU-----------------------------AAUGG a.16.e.Hexamita.sp.fasta --GGGUAC--GGAG-------------------------------UAUAU d.16.e.T.foetus.fasta --UGGUAA--GAUC-------------------------------AAUGA d.16.e.A.khaliulini.fasta --GGAA-CUUAUGC-------------------------------CUUGA d.16.e.E.aedis.fasta --GGAA-CUUAUAG-------------------------------CUUGA d.16.e.A.connecticus.fasta --GAGA-CUUAUAC-------------------------------CUUGA d.16.e.I.barri.fasta --GGAA-GGUAGAU-------------------------------CUUGA d.16.e.A.ferocious.fasta --GGGA-CUUAGAC-------------------------------CUUGG d.16.e.Amblyospora.sp.fasta --GGAA-CCUAGAC-------------------------------CUUGA d.16.e.C.lunata.fasta --GAGAUCAAAAAU-------------------------------CUUGA d.16.e.P.anophelis.fasta --UAUG-CUCAUUG-------------------------------CUAGG d.16.e.Hazardia.sp.fasta --GAA--CCUACGC-------------------------------CUAGG d.16.e.H.milleri.fasta --GAA--CUUACGC-------------------------------CUAGG d.16.e.P.simulii.fasta --AGCAGCGAGCAC-------------------------------AGCAG d.16.e.W.palustris.fasta --AGCAGCAUACAC-------------------------------AGCAG d.16.e.Nosema.sp.03.fasta ---GCAUUGUAA-------------------------------------- d.16.e.Nosema.sp.05.fasta ---GCAUUGUAA-------------------------------------- d.16.e.Endoreticulatus.sp.fast ---GCAUUGUAA-------------------------------------- d.16.e.Nosema.sp.02.fasta ---GCAUUGUAA-------------------------------------- d.16.e.N.spodopterae.fasta ---GCAUUGUAA-------------------------------------- d.16.e.N.trichoplusiae.fasta ---GCAUUGUAA-------------------------------------- d.16.e.N.bombycis.27.fasta ---GCAUUGUAA-------------------------------------- d.16.e.N.bombycis.02.fasta ---GCAUUGUAA-------------------------------------- d.16.e.V.imperfecta.fasta ---GCAUUGUAA-------------------------------------- d.16.e.N.furnacalis.fasta ---GCAUUGUGA-------------------------------------- d.16.e.Microsporidium57864.fas ---GCAAUAUGA-------------------------------------- d.16.e.Vairimorpha.sp.C21.fast ---GCAAUAUGA-------------------------------------- d.16.e.N.oulemae.fasta ---GCAAUAUGA-------------------------------------- d.16.e.N.necatrix.fasta ---GCAAUAUGA-------------------------------------- d.16.e.V.necatrix.fasta ---GCAAUAUGA-------------------------------------- d.16.e.N.apis.fasta ---GCAAUAUGA-------------------------------------- d.16.e.O.occidentalis.fasta ---GCAAUAUGA-------------------------------------- d.16.e.Microsporidium.sp.DP119 --UACAUUGUGAAA-------------------------------CGGAU d.16.e.V.corneae.fasta ---UGAUGGAGGAG-------------------------------CCGAU d.16.e.A.michaelis.fasta --AGUAGCAAGUUG-------------------------------GAAAA d.16.e.T.contejeani.fasta ---AAAUUAUGAUU-------------------------------ARUGA d.16.e.E.hellem.fasta --GUAGUU-UGGUU-------------------------------GUAGC d.16.e.Encephalitozoon.sp.fast --GUAAG---AGGU-------------------------------UUGGC d.16.e.E.cuniculi.fasta --GUAGUGAUGUGU-------------------------------GUGGC d.16.e.O.colligata.fasta --GUAUGUAUGAGG-------------------------------AGAGC d.16.e.E.salmonis.fasta --GUUGUAGCGGAG-------------------------------CGGAU d.16.e.N.salmonis.fasta --GUUGUAGCGGAG-------------------------------CGGAU d.16.e.Enterocytozoonidae.sp.f --GUUGUAGCGGAG-------------------------------CGGAC d.16.e.E.bieneusi.fasta --AUGUUUGCGGAA-------------------------------CGGAU d.16.e.B.algerae.fasta --UAAUGCAUGAAU-------------------------------GUAGA d.16.e.T.solenopsae.fasta --UAAUUCAUAAAA-------------------------------AUAGA d.16.e.V.acridophagus.fasta --CAAUGCUUAUAU--------------------------------UCGA d.16.e.Bacillidium.sp.fasta --GAUAAAGAGAUA-------------------------------AUAGG d.16.e.P.cristatellae.fasta --GACAUGGUGAAU-------------------------------AUAGG d.16.e.Pleistophora.sp.fasta --GCUCUGGAGAAG-------------------------------CCAAC d.16.e.O.operophterae.fasta --GGGCUUGCGGAG-------------------------------CGGGC d.16.e.F.magnivora.fasta --UAGGUUAGCAUG-------------------------------UGAGA d.16.e.G.atherinae.fasta --UGAUUCCAUGGA-------------------------------AUAAG d.16.e.Ichthyosporidium.sp.fas --UGAUUCUGGGGA-------------------------------AUAAG d.16.e.L.acerinae.fasta --CGAUGCCGCGGA-------------------------------ACAAG d.16.e.H.anguillarum.fasta --GGAAAGCAGAGG-------------------------------AUAAG d.16.e.P.mirandellae.fasta --GGAAAGCAGAGA-------------------------------AUAAG d.16.e.T.hominis.fasta --GAAAAGCAGAGG-------------------------------AUGAG d.16.e.V.culicis.fasta --GAAAAGCAGAGG-------------------------------AUGAG d.16.e.P.hippoglossoideos.fast --GAAAAGCAGGGA-------------------------------AUAAG d.16.e.Microgemma.sp.fasta --GAAGAGUUCUGA-------------------------------AUA-G d.16.e.S.lophii.fasta --GAAGAGUUCAGA-------------------------------GUAAG d.16.e.Pleistophora.sp.LS.fast --AUACUGGCUGAU-------------------------------UGAAG d.16.e.D.gammarellum.fasta --GGAAGGCGGAGA-------------------------------AUUAG d.16.e.M.prosopium.fasta --GAAAAGCUAAGA-------------------------------AUGAG d.16.e.A.scoticae.fasta --GGGACCCGGGGC-------------------------------GAGAG d.16.e.P.whitei.fasta --GGGAGCGGGGGC-------------------------------GACAG a.16.c.C.coccineum.fasta CAA-G-CUUGAGUACGUUAGGGGCAGAGGGA--AUUUAUGGUGGAGCGGU a.16.c.C.ruber.fasta AAA-GACUUGAGUUUGGUAGGGGCAGAGGGA--AUUUUCGGUGGAGCGAU d.16.c.N.tabacum.fasta CAA-G-CUGGAGUACGGUAGGGGCAGAGGGA--AUUUCCGGUGGAGCGGU d.16.c.S.oleracea.fasta CAA-G-CUGGAGUACGGUAGGGGCAGAGGGA--AUUUCCGGUGGAGCGGU d.16.c.Z.mays.fasta CAA-G-CUGGAGUACGGUAGGGGCAGAGGGA--AUUUCCGGUGGAGCGGU d.16.c.M.polymorpha.fasta CAA-G-CUGGAGUACGGUAGGGGCAGAGGGA--AUUUCCGGUGGAGCGGU d.16.c.R.communis.fasta CAA-G-CUGGAGUACGGUAGGGGCAGAGGGA--AUUUCCGGUGGAGCGGU d.16.c.C.vulgaris.fasta UAG-G-CUAGAGUUUGGUAGGGGCAGAGGGA--AUUCCCGGUGGAGCGGU d.16.c.P.wickerhamii.fasta UAA-G-CUAGAGUUUGGUAGAGGCAGAGGGA--AUUCCCGGUGGAGCGGU d.16.c.P.minor.fasta AGA-G-CUUGAGUAUGGUAGGGGCAGAGGGA--AUUCCCGGUGUAGCGGU d.16.c.N.olivacea.fasta GGG-G-CUUGAGUACGGUAGGGGCAGAGGGA--AUUUCCGGUGUAACGGU d.16.c.P.parkeae.fasta GAG-A-CUGGAGUGUGGUAGGGGCAGAGGGA--AUUCCCGGUGUAGCGGU d.16.c.C.reinhardtii.fasta CGA-G-CUUGAGUACGGUAGGGGCAGAGGGA--AUUCCAUGUGGAGCGGU b.16.m.A.castellanii.fasta CUA-GAGU---UUAU---UAGAAGAUAGCU-GAACAUUAAGUGUAAAGGU d.16.c.P.thurberi.fasta AUG-GAGUA--UUAAACACAAAAGAUAGAUAGAACCUUAUGAUGAACAAU b.16.m.C.crispus.fasta CUA-GAGU---UUAAA--GAGAAGAUU-AUAGAAUUUUAAGUGUAACGGU d.16.c.T.gondii.fasta CUU-GAGU---UCGAU----AAGGGUAAGAGGAAUUUUUUGAGGAGUAGU b.16.m.N.crassa.fasta UUU-UUCUAGAGUUUUAUGUAAGAAGGUCGU-ACUCUAGAGUGGAGAGAU b.16.m.P.anserina.fasta UUU-UACUAGAGUUUUAUAUAAGAAGAUCUU-ACUCUAGAGUGUAGAGUU b.16.m.P.chrysogenum.fasta UUU-UACUAGAGUUAUAUGAGAGAAGGAAGA-AUUUCUGGA-GUAGAGAU b.16.m.E.nidulans.fasta AUU-UACUAGAGUUUUAUGUAAGAAGGAAGA-AGCUCUGGA-GUAGUGAU b.16.m.S.cerevisiae.fasta UUA-GAGU---UAAUAAAAUUAAUU-AAAGA-AUUAUAAUA-GUAAAGAU b.16.m.W.saturnus.m.fasta AUA-GAGU---UAACAAUAGUAAUA-AAUGA-AUUAUAAUA-GUAAUGAU b.16.m.P.minor.fasta AGA-AAAU---AAUUAAUAUCAA-A-AAUUA-AUAAUUUAG-GUAAUAGU d.16.c.P.falciparum.fasta AUA-GAGUA--UUAUAAAAGUAUUA-A--GA-AUUUUUUGA-GAAGUAGU d.16.c.B.bovis.fasta AGA-GGGUA--AAAUAAGUUUAA-----GGA-AUUUUUUGA-GUAAUGGU b.16.m.T.pyriformis.fasta CAA-UAAUUAUAAUUAAGAGUAGGAGACUUA------UAGA-ACAACGAU d.16.m.S.sinuspaulianus.fasta CUA-GAAUC-UAAUAGAGGGUAAAACAAAUA-AUAUUUAAA-GUAAGGAU b.16.m.P.tetraurelia.fasta UAG-UGAUUUUUUUUUAUGUAAG-----UUG-AGCUUGUAAACUAGUGAU b.16.m.D.discoideum.fasta AAA-GAACCUAGAGUAAAGAUGAUGUAUUUAGAAGAACUAAUCUAGAGGU d.16.m.P.polycephalum.fasta AUU-AUCUUGAGUUCAGAAGGCGGUUUAUUGAAUUCUCGAA-GGAAGGGU b.16.m.P.littoralis.fasta GAA-AGCUUGAGUCUGACAGAGGGA-AAUGGAAUUUUUUAA-UUAGGGUU b.16.m.P.wickerhamii.fasta CCA-AACUUGAGUAUU-UAUUAGGAGAGUAGAAUUCCUGGA-GUAGAGGU d.16.c.H.africana.fasta UUA-AGCUAGAGCUUUGAAUAAAGCAAGGGG-AAUUUCUAAUGAAGCGGU d.16.c.C.fragile.fasta AUU-AACUUGAGUUUGGUAGAGGCAGAGGGA--ACUCUCGAUGUAGUGGU d.16.c.C.sertularioides.fasta AAA-AACUUGAGAUAGAUAGAGGUAGAAGGA--AUUCUCGGUGGAGCGGU d.16.c.C.humicola.fasta UCG-GACUAGAGUGCGGAAGAGGUAGAGGGA--AUCCCUAGCGUAACAGU d.16.c.P.uvella.fasta UGU-UACUAGAGUUCGGAAGAAGUAGAGGGA--AUUCCUAAAGGAACAGU a.16.c.G.nostochinearum.fasta UA--GGCUUGAGUACGGUAGGGGUAGAGGGA--AUUCCCGGUGUAGCGGU a.16.c.G.wittrockiana.fasta UA--GACUAGAGUAUGGUAGGGGCAAAGGGA--AUUCUCAGUGUAGCGGU d.16.c.C.paradoxa.fasta UU--GGCUCGAGUACGGUAGGGGCAGAGGGA--AUUCCUGGUGUAGCGGU d.16.y.C.paradoxa.fasta UU--GGCUUGAGUACGGUAGGGGCAGAGGGA--AUUCCUGGUGUAGCGGU d.16.c.Cryptomonas.sp.fasta UA--GACUUGAGUGUGGUAGAGGUAGAGGGA--AUUCCUAGUGUAGCGGU d.16.c.P.palmata.fasta UA--GGCUAGAGUAUGGUAGGGGCAGAGGGA--AUUCCCAGUGUAGCGGU d.16.c.H.akashiwo.fasta UAU-GACUUGAGUGUGGUAGAGGUAGAGGGA--AUUUCCAGUGGAGCGGU d.16.c.S.pseudocostatum.fasta UA--GACUAGAGUAUAGUAGAGGUAAAGGGA--AUUUCCAGUGGAGCGGU d.16.c.P.littoralis.fasta UA--GACUUGAGGAUAGUAGGGGUAAAGGGA--AUUUCCAGUGGAGCGGU d.16.c.C.caldarium.fasta UA--GACUAGAGAAUGGUAGGGGCAGAGAGA--AUUCUCAGUGUAGCGGU a.16.c.E.huxleyi.fasta UA--GACUUGAGUAUGGCAGGGGUAGAGGGA--AUUUCUAGUGUAGCGGU d.16.c.E.gracilis.fasta UA--GACUUGAGUAUGGUAGGGGUGAAGGGA--AUUUCCAGUGUAGCGGU d.16.b.Anabaena.sp.fasta CAG-AGCUAGAGUACGUUCGGGGCAGAGGGA--AUUCCUGGUGUAGCGGU d.16.b.Chlorogloeopsis.PCC7518 CAA-AACUAGAGUGCAGUCGGGGCAGGGGGA--AUUCCUGGUGUAGCGGU d.16.b.Synechococcus.sp.fasta AUU-GACUAGAGUAUGGUAGGGGUAGCGGGA--AUUCCAGGUGUAGCGGU d.16.b.Synechocystis.PCC6803.G CAA-GACUAGAGUACAGUAGGGGUAGCAGGA--AUUCCCAGUGUAGCGGU d.16.b.O.agardhii.fasta GAA-GACUAGAGUGUAGUAGGGGCAGAGGGA--AUUCCUGGUGUAGCGGU d.16.b.Pleurocapsa.7516.fasta GUG-AGCUAGAGUAUGGUAGGGGUUGAGGGA--AUUCCCAGUGUAGCGGU d.16.b.M.aeruginosa.fasta GCA-GACUAGAGAGCAGUAGGGGUAGCAGGA--AUUCCCAGUGUAGCG-U b.16.m.C.reinhardtii.fasta UGA-AC----ACUUUAAACGUUGGG----UA--AUAUUCGGAGGAUCGGU d.16.m.C.eugametos.fasta UAA-AG----A----AAAAGAAUAG----GA--AUUCUCCAUGUAUUGGU b.16.m.M.senile.fasta UCC-AA----G-----AAGGUAAAU----GG--AAUUUUUCUGGAGCGGU d.16.b.S.pneumoniae.fasta UUU-AACUUGAGUGCAAGAGGGGAGAGUGGA--AUUCCAUGUGUAGCGGU d.16.b.S.pyogenes.fasta GAG-AACUUGAGUGCAGAAGGGGAGAGUGGA--AUUCCAUGUGUAGCGGU d.16.b.B.anthracis.fasta GGA-GACUUGAGUGCNGAAGAGGAAAGUGGA--AUUCCAUGUGUAGCGGU d.16.b.B.cereus.1.fasta GGA-GACUUGAGUGCAGAAGAGGAAAGUGGA--AUUCCAUGUGUAGCGGU d.16.b.E.faecalis.fasta GGA-GACUUGAGUGCAGAAGAGGAGAGUGGA--AUUCCAUGUGUAGCGGU d.16.b.E.faecium2.fasta GGA-GACUUGAGUGCAGAAGAGGAGAGUGGA--AUUCCAUGUGUAGCGGU d.16.b.L.monocytogenes.fasta GAA-GACUGGAGUGCAGAAGAGGAGAGUGGA--AUUCCACGUGUAGCGGU d.16.b.B.subtilis.fasta GGG-AACUUGAGUGCAGAAGAGGAGAGUGGA--AUUCCACGUGUAGCGGU d.16.b.B.subtilis.GEN.fasta GGG-AACUUGAGUGCAGAAGAGGAGAGUGGA--AUUCCACGUGUAGCGGU d.16.b.B.halodurans.fasta GGA-GACUUGAGUACAGAAGAGGAGAGUGGA--AUUCCACGUGUAGCGGU d.16.b.S.aureus.fasta GAA-AACUUGAGUGCAGAAGAGGAAAGUGGA--AUUCCAUGUGUAGCGGU d.16.b.S.aureus.GEN.fasta GAA-AACUUGAGUGCAGAAGAGGAAAGUGGA--AUUCCAUGUGUAGCGGU d.16.b.L.lactis.GEN.fasta GUA-GACUUGAGUGCAGGAGAGGAGAGUGGA--AUUCCAUGUGUAGCGGU d.16.b.S.pyogenes.GEN.fasta GAG-AACUUGAGUGCAGAAGGGGAGAGUGGA--AUUCCAUGUGUAGCGGU d.16.b.L.acidophilus.fasta UUU-UUCUUGAGUGCAGAAGAGGAGAGUGGA--ACUCCAUGUGUAGCGGU d.16.b.M.capricolum.fasta UUU-UACUAGAAUGCAAGAGAGGUAAGCGGA--AUUCCAUGUGUAGCGGU d.16.b.M.mycoides.fasta UAU-UACUAGAAUGCAAGAGAGGUAAGCGGA--AUUCCAUGUGUAGCGGU d.16.b.E.rhusiopathiae.fasta GUA-GACUAGAGUGCAGGAGAGGUUAGUGGA--AUUCCAUGUGUAGCGGU d.16.b.C.innocuum.fasta GUA-UGCUGGAGUGCAGAAGAGGGCGAUGGA--AUUCCAUGUGUAGCGGU d.16.b.M.genitalium.fasta UCA-GUCUAGAGUGUGGUAGGGAGUUUUGGA--AUUUCAUGUGGAGCGGU d.16.b.M.pneumoniae.GEN.fasta UUA-AUCUAGAGUGUGGUAGGGAGUUUUGGA--AUUUCAUGUGGAGCGGU d.16.b.M.pneumoniae.fasta UUA-AUCUAGAGUGUGGUAGGGAGUUUUGGA--AUUUCAUGUGGAGCGGU d.16.b.M.gallisepticum.fasta CUA-GUCUAGAGUUUGGUAGAGAGUCCUGGA--ACUCCAUGUGGAGCGGU d.16.b.U.urealyticum.fasta UAA-ACCUAGAGUGUAGUAGGGAGUUGGGGA--ACUCCAUGUGGAGCGGU d.16.b.U.urealyticum.GEN.fasta UAA-ACCUAGAGUGUAGUAGGGAGUUGGGGA--ACUCCAUGUGGAGCGGU d.16.b.M.hyopneumoniae.fasta GCA-AAAUAGAAUUAUGAAGAGGUUAGCGGA--AUUCCUAGUGGAGUGGU d.16.b.F.necrophorum.fasta CCU-UACUAGAGUACUGGAGAGGUAGGCGGA--ACUACAAGUGUAGAGGU d.16.b.F.nucleatum.fasta UGU-AACUAGAGUNCUGGAAAGGUAAGCGGA--ACUACAAGUGUAGAGGU d.16.b.S.moniliformis.fasta UCA-GACUAGAGUACUGGAAAGGUGGGUGGA--ACUACACGAGUAGAGGU d.16.b.C.botulinum.F.fasta GAU-AUCUAGAGUGCAGGAGAGGAAAGCGGA--AUUCCUAGUGUAGCGGU d.16.b.C.tetani.fasta GGC-AUCUAGAGUACAGGAGAGGGAAACGGA--AUUCCUAGUGUAGCGGU d.16.b.C.perfringens.fasta GUU-AUCUAGAGUGCAGGAGAGGAGAGUGGA--AUUCCUAGUGUAGCGGU d.16.b.C.difficile.fasta GGA-GACUUGAGUGCAGGAGAGGAGAGUGGA--AUUCCUAGUGUAGCGGU d.16.b.E.brachy.fasta GAA-GGCUUGAGUGCAGGAGAGGAAAGCGGA--AUUCCUAGUGUAGCGGU d.16.b.Epulopiscium.sp.fasta UCA-AACUAGAGUGCAGGAGAGGAAAGUGGA--AUUCCAAGUGUAGCGGU d.16.b.H.chlorum.fasta GAU-GUCUUGAGAGAUGGAGAGGAUAGCGGA--AUUCCCGGUGUAGCGGU b.16.m.G.max.fasta AUU-CACUUGAGUGAGACA--GAGGAGAGUGGAAUUUCGUGUGUAGGGGU b.16.m.O.berteriana.fasta AUU-CACUUGAGUGAGACA--GAGGAGAGUGGAAUUUCGUGUGUAGGGGU b.16.m.S.cereale.fasta AUU-CACUUGAGUGAGACA--GAGGAGAGUGGAAUUUCGUGUGUAGGGGU b.16.m.T.aestivum.fasta AUU-CACUUGAGUGAGACA--GAGGAGAGUGGAAUUUCGUGUGUAGGGGU d.16.m.Z.mays.fasta AUU-CACUUGAGUGAGACA--GAGGAGAGUGGAAUUUCGUGUGUAGGGGU b.16.m.M.polymorpha.fasta AUU-UACUAGAGUAAGGCAUAGAGGAAAGCGGAAUUUCGUGUGUAGCGAU b.16.m.N.olivacea.fasta AUU-AACUCGAGAUAUAAA--GAGGAAAGCGGAAUUUCAAAUGGAGAGGU d.16.b.G.liquefaciens.fasta CCA-AACUAGAGUGUGAGA--GAGGGUUGUGGAAUUCCCAGUGUAGAGGU d.16.b.B.japonicum.fasta AAG-AUCUUGAGUUCGGGA--GAGGUGAGUGGAACUGCGAGUGUAGAGGU d.16.b.R.acidophilus.fasta GAG-AUCUUGAGUUCGAGA--GAGGUGAGUGGAACUGCGAGUGUAGAGGU d.16.b.A.caulinodans.fasta GCG-AUCUUGAGUUCGAGA--GAGGUUGGUGGAACUCCGAGUGUAGAGGU d.16.b.B.quintana.fasta GAU-GUCUCGAGUGUGGAA--GAGGUGAGUGGAAUUCCGAGUGUAGAGGU d.16.b.M.loti.fasta GGU-AUCUCGAGUCCGGAA--GAGGUGAGUGGAAUUCCGAGUGUAGAGGU d.16.b.A.tumefaciens.fasta GGU-AUCUUGAGUAUGGAA--GAGGUAAGUGGAAUUCCGAGUGUAGAGGU d.16.b.B.bacilliformis.fasta GAU-GUCUCGAGUAUGGAA--GAGGUGAGUGGAAUUCCGAGUGUAGAGGU d.16.b.B.henselae.fasta GGU-AUCUUGAGUGUGGAA--GAGGUGAGUGGAAUUCCGAGUGUAGAGGU d.16.b.B.melitensis.fasta GAA-GUCUUGAGUAUGGUA--GAGGUGAGUGGAAUUCCGAGUGUAGAGGU d.16.b.R.orientis.fasta GCA-AUCUAGAGUCCGGAA--GAGGUGAGUGGAAUUCCUAGUGUAGAGGU d.16.b.Methylobacterium.sp.fas GGA-CGCUUGAGUAUGGUA--GAGGUUGGUGGAACUCCGAGUGUAGAGGU d.16.b.R.bellii.fasta CUA-AUCUAGAGUGUAGUA--GGGGAUGAUGGAAUUCCUAGUGUAGAGGU d.16.b.R.felis.URRWXCal2.fasta CUA-AUCUAGAGUGUAGUA--GGGGAUGAUGGAAUUCCUAGUGUAGAGGU d.16.b.R.prowazekii.fasta CUA-AUCUAGAGUGUAGUA--GGGGAUGAUGGAAUUCCUAGUGUAGAGGU d.16.b.R.prowazekii.GEN.fasta CUA-AUCUAGAGUGUAGUA--GGGGAUGAUGGAAUUCCUAGUGUAGAGGU d.16.b.R.rickettsii.fasta CUA-AUCUAGAGUGUAGUA--GGGGAUGAUGGAAUUCCUAGUGUAGAGGU d.16.b.A.calcoaceticus.fasta GGA-AGCUAGAGUAUGGGA--GAGGAUGGUAGAAUUCCAGGUGUAGCGGU d.16.b.P.pacificensis.fasta UUA-GGCUAGAGUAGGUGA--GAGGGAAGUAGAAUUUCAGGUGUAGCGGU d.16.b.C.marismortui.fasta GCA-GGCUAGAGUGCAGGA--GAGGAAGGUAGAAUUCCCGGUGUAGCGGU d.16.b.H.halodenitrificans.fas UCA-CGCUAGAGUGCAGGA--GAGGAAGGUAGAAUUCCCGGUGUAGCGGU d.16.b.P.aeruginosa.fasta CUG-AGCUAGAGUACGGUA--GAGGGUGGUGGAAUUUCCUGUGUAGCGGU d.16.b.P.aeruginosa.GEN.fasta CUG-AGCUAGAGUACGGUA--GAGGGUGGUGGAAUUUCCUGUGUAGCGGU d.16.b.Pseudomonas.sp.fasta CCU-GACUAGAGUACGGUA--GAGGGUGGUGGAAUUUCCUGUGUAGCGGU d.16.b.P.putida.fasta GCA-AGCUAGAGUACGGUA--GAGGGUGGUGGAAUUUCCUGUGUAGCGGU d.16.b.C.burnetii.fasta GGU-AUCUUGAGUAUGGUA--GAGGGAANUGGAAUUUCCGGUGUAGCGGU d.16.b.M.capsulatus.fasta UCA-GGCUCGAGUGUGAUA--GAGGGUAGUGGAAUUUCCGGUGUAGCGGU d.16.b.L.pneumophila.1.fasta GUU-GACUCGAGUAUGGGA--GAGGGUAGUGGAAUUUCCGGUGUAGCGGU d.16.b.L.pneumophila.2.fasta GUU-GACUCGAGUAUGGGA--GAGGGUAGUGGAAUUUCCGGUNNNNNNNN d.16.b.A.vinosum.fasta CCG-CGCUAGAGUGUGAAA--GAGGGGGGUGGAAUUCCAGGUGUAGCGGU d.16.b.Beggiatoa.sp.fasta CUU-AGCUAGAGUAUGGUA--GAGGGAAGUGGAAUUCCACGUGUAGCGGU d.16.b.A.hydrophila.fasta UCC-AGCUAGAGUCUUGUA--GAGGGGGGUAGAAUUCCAGGUGUAGCGGU d.16.b.S.putrefaciens.fasta GCG-AACUAGAGUCUUGUA--GAGGGGGGUAGAAUUCCAGGUGUAGCGGU d.16.b.C.freundii.fasta GCA-GGCUAGAGUCUUGUA--GAGGGGGGUAGAAUUCCAGGUGUAGCGGU d.16.b.S.dysenteriae.1.fasta GCA-AGCUUGAGUCUCGUA--GAGGGGGGUAGAAUUCCAGGUGUAGCGGU d.16.b.K.pneumoniae.fasta GCA-GGCUAGAGUCUUGUA--GCGGGGGGUGGAAUUCCAGGUGUCGCGGU d.16.b.P.shigelloides.fasta GCA-AGCUAGAGUCUUGUA--GAGGGGGGUAGAAUUCCAGGUGUAGCGGU d.16.b.Y.pestis.fasta GCA-AGCUAGAGUCUUGUA--GAGGGGGGUAGAAUUCCAGGUGUAGCGGU d.16.b.Y.pseudotuberculosis.fa GCA-AGCUAGAGUCUUGUA--GAGGGGGGUAGAAUUCCAGGUGUAGCGGU d.16.b.S.dysenteriae.2.fasta GCA-AGCUUGAGUCUCGUA--GAGGGGGGUAGAAUUCCAGGUGUAGCGGU d.16.b.E.coli.0157G.GEN.fasta GCA-AGCUUGAGUCUCGUA--GAGGGGGGUAGAAUUCCAGGUGUAGCGGU d.16.b.E.coli.EDL.GEN.fasta GCA-AGCUUGAGUCUCGUA--GAGGGGGGUAGAAUUCCAGGUGUAGCGGU d.16.b.E.coli.fasta GCA-AGCUUGAGUCUCGUA--GAGGGGGGUAGAAUUCCAGGUGUAGCGGU d.16.b.E.coli.K12.GEN.fasta GCA-AGCUUGAGUCUCGUA--GAGGGGGGUAGAAUUCCAGGUGUAGCGGU h.16.b.E.coli.hlxnum.fasta GCA-AGCUUGAGUCUCGUA--GAGGGGGGUAGAAUUCCAGGUGUAGCGGU m.16.b.E.coli.mhg.fasta GCA-AGCUUGAGUCUCGUA--GAGGGGGGUAGAAUUCCAGGUGUAGCGGU s.16.b.E.coli.schem.fasta GCA-AGCUUGAGUCUCGUA--GAGGGGGGUAGAAUUCCAGGUGUAGCGGU d.16.b.S.typhimurium.fasta GCA-GGCUUGAGUCUUGUA--GAGGGGGGUAGAAUUCCAGGUGUAGCGGU d.16.b.S.marcescens.fasta GCA-AGCUAGAGUCUCGUA--GAGGGGGGUAGAAUUCCAGGUGUAGCGGU d.16.b.E.tarda.fasta GCA-AGCUAGAGUCUCGUA--GAGGGAGGUAGAAUUCCAGGUGUAGCGGU d.16.b.P.vulgaris.fasta GUU-GGCUAGAGUCUUGUA--GAGGGGGGUAGAAUUCCACGUGUAGCGGU d.16.b.V.cholerae4.fasta ACA-AGCUAGAGUACUGUA--GAGGGGGGUAGAAUUUCAGGUGUAGCGGU d.16.b.V.cholerae5.fasta ACA-AGCUAGAGUACUGUA--GAGGGGGGUAGAAUUUCAGGUGUAGCGGU d.16.b.V.cholerae2.fasta ACA-AGCUAGAGUACUGUA--GAGGGGGGUAGAAUUUCAGGUGUAGCGGU d.16.b.V.cholerae6.fasta ACA-AGCUAGAGUACUGUA--GAGGGGGGUAGAAUUUCAGGUGUAGCGGU d.16.b.V.cholerae.fasta ACA-AGCUAGAGUACUGUA--GAGGGGGGUAGAAUUUCAGGUGUAGCGGU d.16.b.V.cholerae.GEN.fasta ACA-AGCUAGAGUACUGUA--GAGGGGGGUAGAAUUUCAGGUGUAGCGGU d.16.b.V.parahaemolyticus.fast GCA-GACUAGAGUACUGUA--GAGGGGGGUAGAAUUUCAGGUGUAGCGGA d.16.b.H.influenzae7.fasta GGU-AACUAGAGUACUUUA--GGGAGGGGUAGAAUUCCACGUGUAGCGGU d.16.b.H.influenzae8.fasta GGU-AACUAGAGUACUUUA--GGGAGGGGUAGAAUUCCACGUGUAGCGGU d.16.b.H.influenzae6.fasta GGU-AACUAGAGUACUUUA--GGGAGGGGUAGAAUUCCACGUGUAGCGGU d.16.b.H.influenz.fasta GGU-AACUAGAGUACUUUA--GGGAGGGGUAGAAUUCCACGUGUAGCGGU d.16.b.H.influenzae.fasta GGU-AACUAGAGUACUUUA--GGGAGGGGUAGAAUUCCACGUGUAGCGGU d.16.b.P.multocida.fasta GGA-GUCUAGAGUACUUUA--GGGAGGGNUAGAAUUCCACGUGUAGCGGU d.16.b.P.multocida.GEN.fasta GGA-GUCUAGAGUACUUUA--GGGAGGGGUAGAAUUCCACGUGUAGCGGU d.16.b.X.albilineans.fasta GGC-AACUAGAGUGUGGYA--GAGGAUGGCGGAAUUCCCGGUGUAGCAGU d.16.b.X.campestris.fasta GGU-CACUAGAGUGUGGUA--GAGGGUAGCGGAAUUCCCGGUGUAGCAGU d.16.b.X.fastidiosa.GEN.fasta GAU-AGCUAGAGUGUGGUA--GAGGGUAGCGGAAUUCCUGGUGUAGCAGU d.16.b.D.nodosus.fasta UAA-GACUAGAGUAUGUCA--GAGGAAGGCGGAAUUUCCAGUGUAGCAGU d.16.b.F.tularensis.fasta GCA-AACUAGAGUACGGUA--GAGGAAUGGGGAAUUUCUGGUGUAGCGGU d.16.b.B.parapertussis.fasta CCG-GGCUAGAGUGUGUCA--GAGGGAGGUGGAAUUCCGCGUGUAGCAGU d.16.b.B.pertussis.fasta CCG-GGCUAGAGUGUGUCA--GAGGGAGGUGGAAUUCCGCGUGUAGCAGU d.16.b.B.bronchiseptica2.fasta CCG-GGCUAGAGUGUGUCA--GAGGGAGGUGGAAUUCCGCGUGUAGCAGU d.16.b.u.proteobacterium.fasta CAA-GGCUAGAGUGUGUCA--GAGGGAGGUGGAAUUCCGCAUGUAGCAGU d.16.b.B.mallei.fasta GCA-GGCUAGAGUAUGGCA--GAGGGGGGUAGAAUUCCACGUGUAGCAGU d.16.b.Burkholderia.sp.fasta GCG-GGCUAGAGUAUGGCA--GAGGGGGGUAGAAUUCCACGUGUAGCAGU d.16.b.N.meningitidis.MD58.GEN GGU-GACUCGAGUGUGUCA--GAGGGAGGUAGAAUUCCACGUGUAGCAGU d.16.b.N.meningitidis.Z2491.GE GGU-GACUCGAGUGUGUCA--GAGGGAGGUAGAAUUCCACGUGUAGCAGU d.16.b.N.gonorrhoeae.fasta GGU-GACUCGAGUGUGUCA--GAGGGAGGUGGAAUUCCACGUGUAGCAGU d.16.b.C.testosteroni.fasta CAA-GGCUAGAGUGCGGCA--GAGGGGGAUGGAAUUCCGCGUGUAGCAGU d.16.b.D.desulfuricans.fasta CAC-AACUUGAAUCCGGGA--GAGGGUGGCGGAAUUCCAGGUGUAGGAGU d.16.b.M.xanthus.fasta UUG-UGCUUGAGUGCCGGA--GAGGGUGGCGGAAUUCCCCAAGUAGAGGU d.16.b.D.thermophilus.fasta UCG-UGCUAGAGUGCCGGA--GAGGGUAGCGGAAUUCCCUGUGUAGCGGU d.16.b.B.burgdorferi.fasta UAU-GUCUAGAGUCUGAUA--GAGGAAGUUAGAAUUUCUGGUGUAAGGGU d.16.b.B.burgdorferi.GEN.fasta UAU-GUCUAGAGUCUGAUA--GAGGAAGUUAGAAUUUCUGGUGUAAGGGU d.16.b.B.hermsii.fasta CAU-GACUAGAGUCUGAUA--GGGGAAGUUAGAAUUCCUGGUGUAAGGGU d.16.b.S.aurantia.fasta CAU-GACUAGAGUAUUAGA--GGGGGAGUCGGAAUUCCUAGUGUAGGGGU d.16.b.T.pallidum.A.fasta CUG-GUCUAGAAUCACGGA--GGGGAAACCGGAAUUCCAAGUGUAGGGGU d.16.b.L.illini.fasta GCA-GUCUGGAGUCCCGGA--GAGGCAGGCGGAAUUCCCGGUGUAGCGGU d.16.b.L.interrogans.fasta UGU-GUCUGGAGUUUGGGA--GAGGCAAGUGGAAUUCCAGGUGUAGCGGU d.16.b.C.trachomatis.GEN.fasta UUU-UUCUAGAGGAUAGAU--GGAGAAAAGGGAAUUUCACGUGUAGCGGU d.16.b.C.trachomatis.L2.fasta UUU-UUCUAGAGGGUAGAU--GGAGAAAAGGGAAUUUCACGUGUAGCGGU d.16.b.C.muridarum.fasta UUU-UUCUAGAGGGUAGAU--GGAGAAAAGGGAAUUUCACGUGUAGCGGU d.16.b.C.pneumoniae.AR39.fasta UCU-UUCUAGAGGAUAGAU--GGGGAAAAGGGAAUUCCACGUGUAGCGGU d.16.b.C.pneumoniae.fasta UCU-UUCUAGAGGAUAGAU--GGGGAAAAGGGAAUUCCACGUGUAGCGGU d.16.b.C.pneumoniae.J138.fasta UCU-UUCUAGAGGAUAGAU--GGGGAAAAGGGAAUUCCACGUGUAGCGGU d.16.b.C.pneumoniae.CWL029.fas UCU-UUCUAGAGGAUAGAU--GGGGAAAAGGGAAUUCCACGUGUAGCGGU d.16.b.C.psittaci.fasta UCU-UUCUAGAGGGUAGAU--GGAGAAAAGGGAAUUCCACGUGUAGCGGU d.16.b.D.radiodurans.1.fasta GAU-GUCUUGACCUCUGGA--GAGGUAACUGGAAUUCCUGGUGUAGCGGU d.16.b.D.radiodurans.GEN.fasta GAU-UUCUUGACCUCUGGA--GAGGUAACUGGAAUUCCUGGUGUAGCGGU d.16.b.B.fragilis.fasta UCA-GUCUUGAGUACAGUA--GAGGUGGGCGGAAUUCGUGGUGUAGCGGU d.16.b.P.gingivalis.fasta CCN-GGCUUGAGUUCAGCG--GCGGCAGGCGGAAUUCGUGGUGUAGCGGU d.16.b.C.vibrioforme.fasta UUA-UUCUAGAGUGUCGAA--GAGGAAGAUGGAAUUUCCGGUGUAACGGU d.16.b.C.jejuni.fasta AUA-GUCUAGAGUGAGGGA--GAGGCAGAUGGAAUUGGUGGUGUAGGGGU d.16.b.C.jejuni.GEN.fasta AUA-GUCUAGAGUGAGGGA--GAGGCAGAUGGAAUUGGUGGUGUAGGGGU d.16.b.C.sputorum.fasta UCU-AUCUAGAGUAAGGGA--GAGGCAGAUGGAAUUCUUGGUGUAGGGGU d.16.b.H.pylori.26695.GEN.fast CUA-UUCUAGAGUGUGGGA--GAGGUAGGUGGAAUUCUUGGUGUAGGGGU d.16.b.H.pylori.J99.GEN.fasta CUA-UUCUAGAGUGUGGGA--GAGGUAGGUGGAAUUCUUGGUGUAGGGGU d.16.b.H.pylori2.fasta CUA-UUCUAGAGUGUGGGA--GAGGUAGGUGGAAUUCUUGGUGUAGGGGU d.16.b.A.capsulatum.fasta CCG--GCUUGAGUGUGGGA--GAGGUGAGUGGAAUUUCCGGUGUAGCGGU d.16.b.H.foetida.fasta GAG-AGCUAGAGUGCUGGA--GAGGGUGGUAGAAUUCCACGUGUAGCGGU d.16.b.A.globiformis.fasta GCA-GACUAGAGUGAUGUA--GGGGAGACUGGAAUUCCUGGUGUAGCGGU d.16.b.M.luteus.fasta GCA-GACUAGAGUGCAGUA--GGGGAGACUGGAAUUCCUGGUGUAGCGGU d.16.b.Frankia.sp.fasta GCA-GGCUAGAGUCCGGCA--GGGGAGACUGGAAUUCCUGGUGUAGCGGU d.16.b.S.bottropensis.fasta GCA-GACUAGAGUGUGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.scabiei.fasta GCA-GACUAGAGUGUGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.neyagawaensis.fasta GCA-GACUAGAGUGUGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.diastatochromogenes.f GCA-GACUAGAGUGUGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.Streptomyces.sp.fasta GCA-GACUAGAGUGUGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.acidiscabies.fasta GCA-GGCUAGAGUUCGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.griseus.fasta GCU-AGCUAGAGUGUGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.ornatus.fasta GCU-AGCUAGAGUGUGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.subrutilus.fasta GCU-AGCUAGAGUGUGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.bikiniensis.fasta GCA-GGCUAGAGUGUGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.galbus.fasta GCU-AGCUAGAGUGUGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.hygroscopicus.fasta GCU-AGCUAGAGUGUGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.lincolnensis.fasta GCU-AGCUAGAGUGUGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.coelicolor.fasta GCA-GGCUAGAGUUCGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.tendae.fasta GCA-GGCUAGAGUUCGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.ambofaciens.fasta GCA-GGCUAGAGUUCGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.eurythermus.fasta GCA-GGCUAGAGUUCGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.nodosus.fasta GCA-GGCUAGAGUUCGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.sampsonii.fasta GCA-GGCUAGAGUUCGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.glaucescens.fasta GCA-GGCUAGAGUUCGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.pseudogriseolus.fasta GCA-GGCUAGAGUUCGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.caelestis.fasta GCA-GGCUAGAGUUCGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.bluensis.fasta GCU-AGCUAGAGUUCGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.espinosus.fasta GCA-GGCUAGAGUUCGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.mashuensis.fasta GCA-GGCUAGAGUUCGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.rimosus.fasta GCA-GGCUAGAGUUCGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.limosus.fasta GCA-GGCUAGAGUUCGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.odorifer.fasta GCA-GGCUAGAGUUCGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.felleus.fasta GCA-GGCUAGAGUUCGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.albidoflavus.fasta GCA-GGCUAGAGUUCGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.gougerotii.fasta GCA-GGCUAGAGUUCGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.rutgersensis.fasta GCA-GGCUAGAGUUCGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.intermedius.fasta GCA-GGCUAGAGUUCGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.thermodiastaticus.fas ACA-GUCUAGAGUCCGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.thermoviolaceus.fasta GCA-GGCUAGAGUUCGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.thermovulgaris.1.fast GCA-GGCUAGAGUUCGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.thermovulgaris.2.fast GCA-GGCUAGAGUUCGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.macrosporus.fasta GCA-GGCUGGAGUUCGGNA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.megasporus.fasta GCA-GGCUGGAGUUCGGCA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.S.thermolineatus.fasta ACA-GGCUAGAGUUCGGUA--GGGGAGAUCGGAAUUCCUGGUGUAGCGGU d.16.b.M.tuberculosis.2.fasta GCA-GACUAGAGUACUGCA--GGGGAGACUGGAAUUCCUGGUGUAGCGGU d.16.b.M.tuberculosis.3.fasta GCA-GACUAGAGUACUGCA--GGGGAGACUGGAAUUCCUGGUGUAGCGGU d.16.b.M.avium.fasta GCA-GACUAGAGUACUGCA--GGGGAGACUGGAAUUCCUGGUGUAGCGGU d.16.b.M.leprae.fasta GCA-GACUAGAGUACUGCA--GGGGAGACUGGAAUUCCUGGUGUAGCGGU d.16.b.M.leprae.GEN.fasta GCA-GACUGGAGUACUGCA--GGGGAGACUGGAAUUCCUGGUGUAGCGGU d.16.b.M.tuberculosis.CDC1551. GCA-GACUAGAGUACUGCA--GGGGAGACUGGAAUUCCUGGUGUAGCGGU d.16.b.M.tuberculosis.GEN.fast GCA-GACUAGAGUACUGCA--GGGGAGACUGGAAUUCCUGGUGUAGCGGU d.16.b.N.asteroides.fasta GCG-GACUAGAGUACUUCA--GGGGAGACUGGAAUUCCUGGUGUAGCGGU d.16.b.R.erythropolis.fasta GCA-GACUUGAGUACUGCA--GGGGAGACUGGAAUUCCUGGUGUAGCGGU d.16.b.C.diphtheriae.fasta GCAUAACUUGAGUGCUGUA--GGGGAGACUGGAAUUCCUGGUGUAGCGGU d.16.b.A.israelii.fasta GCU-CGCUUGAGUGCGGUA--GGGGAGGCUGGAACUCCUGGUGUAGCGGU d.16.b.B.hyodysenteriae.fasta UAA-GUCUUGGAUAUUGUA--GGGGAUGAUGGAAUUCUCGGUGUAGCGGU d.16.b.G.subterranea.fasta UGA-GACUUGAGGGUACCA--GAGGUAGACAGAAUUACCUGAGUAGGGGU d.16.b.P.miotherma.fasta GUN-NUCUUGGGCGUAGCA--GAGGUAGACGGAAUUACCUGAGUAGGGGU d.16.b.B.andersonii.fasta AUA-GACUAGAAUCUAGGG--GAAGGUAGUGGAAUUUCCUGUGUAGCGGU d.16.b.H.aurantiacus.fasta GUU-GACUAGAGGCUCGCA--GAGGAACGUGGAAUUCCCGGUGUAGUGGU d.16.b.Leptospirillium.sp.fast GCA-GACUAGAGGCUGGGA--GAGGGAAGCGGAAUUUCUGGUGUAGCGGU d.16.b.A.aeolicus.fasta CCC-GACUUGAGGCACGCC--CGGGCAGGCGGAAUUCCCGGGGUAGCGGU d.16.b.A.pyrophilus.fasta CCC-GACUUGAGGCACGCC--CGGGCAGGCGGAAUUCCCGGGGUAGCGGU d.16.b.T.maritima.fasta CCA-GGCUUGGGGGCGGUA--GAGGGAGACGGAACUGCCGGUGUAGGGGU d.16.b.T.maritima.GEN.fasta CCA-GGCUUGGGGGCGGUA--GAGGGAGACGGAACUGCCGGUGUAGGGGU n.16.b.T.thermophilus.2.num.fa UCA-GGCUAGACGGUGGGA--GAGGGUGGUGGAAUUCCCGGAGUAGCGGU s.16.b.T.thermophilus.2.schem. UCA-GGCUAGACGGUGGGA--GAGGGUGGUGGAAUUCCCGGAGUAGCGGU d.16.b.T.thermophilus.2.fasta UCA-GGCUAGACGGUGGGA--GAGGGUGGUGGAAUUCCCGGAGUAGCGGU s.16.b.T.thermophilus.1.schem. UCA-GGCUAGACGGUGGGA--GAGGGUGGUGGAAUUCCCGGAGUAGCGGU n.16.b.T.thermophilus.1.num.fa UCA-GGCUAGACGGUGGGA--GAGGGUGGUGGAAUUCCCGGAGUAGCGGU d.16.b.T.thermophilus.1.fasta UCA-GGCUAGACGGUGGGA--GAGGGUGGUGGAAUUCCCGGAGUAGCGGU d.16.b.T.aquaticus.fasta UCA-GGCUAGACGGUGGGA--GAGGGUGGUGGAAUUCCCGGAGUAGCGGU d.16.b.T.roseum.fasta CCU-GGCUCGAGGGCGGGA--GAGGCGGGUGGAAUUCCCGGUGUAGCGGU d.16.b.P.marina.fasta -AG-GGCUUGAGGGAGAUA--GGGGUGAGCGGAACUGAUGGUGGAGCGGU d.16.b.P.staleyi.fasta CAA-GACUUGAGGGGGAUA--GAGGUAAGCGGAACUGAUGGUGGAGCGGU d.16.b.P.Schlesner.fasta CCA-CGCUCGAGGGAGACA--GAGGUCAGUGGAACUUCGGGUGGAGCGGU d.16.b.G.obscuriglobus.1.fasta ACG-GCCUGGAGGGAGGUA--GGGGCAUGUGGAACUGUAGGUGGAGCGGU d.16.b.I.pallida.fasta CCC-UUCUGGAGGGGCGUA--GAGGGACUCGGAACUUCCGGUGGAGCGGU d.16.a.P.abyssi.fasta CGG-GCCUUGGGACCGGGA--GAGGCCGGGGGUACCCCCGGGGUAGGGGU d.16.a.P.horikoshii.fasta CGG-GCCUUGGGACCGGGA--GAGGCCGGGGGUACCCCCGGGGUAGGGGU d.16.a.P.furiosus.fasta CGG-GCCUUGGGACCGGGA--GAGGCCGGGGGUACCCCCGGGGUAGGGGU d.16.a.T.celer.fasta CGG-GCCUUGGGACCGGGA--GAGGCCGGGGGUACCCCUGGGGUAGGGGU d.16.a.A.fulgidus.fasta CCA-GCCUAGGGACCGGGA--GAGGCCGGGGGUAUUCCCGGAGUAGGGGU d.16.a.N.equitans.fasta CCG-GCCUAGGGACCGGGA--GGGGCCGACCGUACUCCCGGGGGAGCGGU d.16.a.A.pernix.K1.fasta UCG-GGCUAGGGGGCGGGA--GAGGCCGAGGGUACUCCCGGGGUAGGGGC d.16.a.P.occultum.fasta CCG-GGCUAGGGGGCGGGA--GAGGCCGAGGGUACUCCCGGGGUAGGGGC d.16.a.T.tenax.fasta CCG-GGCUAGGGGGCGGGA--GAGGCCGCCGGUACUCCGGGGGUAGGGGC d.16.a.S.acidocaldarius.fasta GUG-GGCUAGGGGGCGGGA--GAGGCGGGGGGUACUCCCGGAGUAGGGGC d.16.a.S.solfataricus.fasta GUG-GGCUAGGGGGCGGGA--GAGGCGGGGGGUACUCCCGGAGUAGGGGC d.16.a.S.solfataricus.2.fasta UCG-GGCUAGGGGGCGGGA--GAGGCCAGCGGUACUCCCGGAGUAGGGGC d.16.a.M.thermautotrophicus.1. UCAUGACUCGAGGUCGGGA--GAGGCUGGAGGUACUCCCAGGGUAGGGGU d.16.a.M.thermautotrophicus.2. UCAUGACUCGAGGUCGGGA--GAGGCUGGAGGUACUCCCAGGGUAGGGGU d.16.a.M.formicicum.fasta UUA-GGCUUGAGGCCGGGA--GAGGUUAGCGGUACUCCCGGGGUAGGGGU d.16.a.M.vannielii.fasta CUG-GACUUGGGACCGGGA--GAGGACAAGGGUACUCCAGGGGUAGCGGU d.16.a.H.marismortui.rrnA.fast UCC-GGCUUGGGGCCGGAA--GACCUGAGGGGUACGUCCGGGGUAGGAGU d.16.a.H.marismortui.rrnB.fast CAC-AGCUUGGGGCCGAGA--GACUCAACGGGUACGUCCGGGGUAGGAGU d.16.a.Halobacterium.sp.fasta UUC-AGCUUGGGACCGGAA--GACCUGAGGGGUACGUCUGGGGUAGGAGU d.16.a.N.bangense.fasta CUC-GGCUUGGGACCGGAA--GACCAGAGGGGUACGUCUGGGGUAGGAGU d.16.a.N.innermongoliae.fasta UGU-GGCUUGGGACCGGAA--GACCAGAGGGGUACGUCUGGGGUAGGAGU d.16.a.H.volcanii.fasta CGU-GGCUUGGGACCGGAA--GGCUCGAGGGGUACGUCCGGGGUAGGAGU d.16.a.M.hungatei.fasta UAU-UUCUAGGGACCGGGA--GAGGUGAGAGGUACUGCCGGGGUAGGAGU d.16.a.P.torridus.fasta CAA-AGCUUGGGACCGGGU--GGGGUUGAACGUACUUUCAGGGUAGGGGU d.16.a.T.acidophilum.fasta UAA-GACUUGGGACCGGGU--GAGGUUGAAUGUACUUUCAGGGUAGGGGU a.16.e.G.ardeae.fasta GAGUGGGC------------GGGGGCAUUA-GUACCGGACGGGGACGGGU d.16.e.G.intestinalis.fasta GAGCGGGC------------GGGGGCACCG-GUACCGGCCGGGGACGGGU a.16.e.G.muris.fasta GAAUGGGU------------AAGGGCAUGU-GUAUUGGUGGGGGACGGGU d.16.e.A.bracteata.fasta GAGCACUU------------GGGGGUGAGG-GUAUUCCUGCGUGAGAGGU d.16.e.Glomus.sp.W3349.fasta GGAUAGUU------------GGGGGCAUUA-GUAUUCAAUUGUCAGAGGU d.16.e.S.cerradensis.fasta GGAUAGUU------------GGGGGCAUUA-GUAUUCAAUUGUCAGAGGU a.16.e.G.intraradices.fasta GGAUAGUU------------GGGGGCAUUA-GUAUUCAAUUGUCAGAGGU d.16.e.S.culisetae.fasta GGACAGUU------------GGGGGCAUUU-GUAUGGCGUUGUCAGUGGU a.16.e.P.balamuthi.fasta GGACAGCC------------GGGGUGGUUA-AUACUUCCGUGCUAGGGGU d.16.e.A.flavus.fasta GGAUAGUC------------GGGGGCGUCA-GUAUUCAGCUGUCAGAGGU d.16.e.T.caries.fasta GGAUAGUU------------GGGGGCAUUA-GUAUUCACAUGCUAGAGGU d.16.e.M.circinelloides.fasta AAACGGUU------------GGGGACAUUU-GUAUUUGGUCGCUAGAGGU d.16.e.M.racemosus.fasta AAACGGUU------------GGGGACAUUU-GUAUUUGGUCGCUAGAGGU d.16.e.R.oryzae.fasta AAACGGUU------------AGGGGCAUUU-GUAUUUGGUCGCUAGAGGU a.16.e.M.edulis.fasta GGACUGAC------------GGGGGCAUUC-GUAUUACGGUGUUAGAGGU a.16.e.P.magellanicus.fasta GGACAGAC------------GGGGGCAUUC-GUAUUACGGUGUUAGAGGU b.16.e.E.granulosus.fasta AGACAGGC------------GGGGGCGUUU-GUAUGGCUGCGCUAGAGGU d.16.e.D.melanogaster.fasta AAGCAGUUU-----------GGGGGCAUUA-GUAUUACGACGCGAGAGGU b.16.e.C.koreana.fasta GGACAGAC------------GGGGGCAUUC-GUACUGCGACGUUAGAGGU b.16.e.A.australis.fasta GGACAGAC------------GGGGGCAUUC-GUAUUGCGACGCUAGAGGU b.16.e.O.utahensis.fasta GGACAGGC------------GGGGGCAUUC-GUAUUGCGACGUUAGAGGU b.16.e.A.salina.fasta AGACAGAC------------GGGGGCAUUC-GUACUGCGACGCUAGAGGU d.16.e.M.musculus.fasta GGACGGCC------------GGGGGCAUUC-GUAUUGCGCCGCUAGAGGU d.16.e.R.norvegicus.fasta GGACGGCC------------GGGGGCAUUC-GUAUUGCGCCGCUAGAGGU d.16.e.H.sapiens.fasta GGACGGCC------------GGGGGCAUUC-GUAUUGCGCCGCUAGAGGU d.16.e.O.cuniculus.fasta GGACGGCC------------GGGGGCAUUC-GUAUUGCGCCGCUAGAGGU d.16.e.X.borealis.fasta GGACGGCC------------GGGGGCAUUC-GUAUUGUGCCGCUAGAGGU d.16.e.X.laevis.fasta GGACGGCC------------GGGGGCAUUC-GUAUUGUGCCGCUAGAGGU d.16.e.A.castellanii.fasta GGAUAGUU------------GGGGGCAUUA-AUAUUUAAUUGUCAGAGGU d.16.e.B.mandrillaris.fasta GGACAGUU------------GGGGGCAUUA-AUAUUUAAUUGUCAGAGGU d.16.e.P.falciparum.A.fasta GAGUAGCUU-----------GGGGACAUUC-GUAUUCAGAUGUCAGAGGU d.16.e.P.falciparum.S.fasta GAGUAGCUU----------UGGGGGCAUUC-GUAUUCAGAUGUCAGAGGU d.16.e.P.vivax.A.fasta GAGUAGCUU-----------GGGGGCAUUU-GUAUUCAGAUGUCAGAGGU d.16.e.P.vivax.O.fasta GAGUAGCAU-----------GGGGGCAUUU-GUAUUCAGAUGUCAGAGGU d.16.e.P.vivax.S.fasta GAGUAGUUU-----------GGGGACAUUU-GUAUUCAGAUGUCAGAGGU d.16.e.E.histolytica.fasta GAACAAUU------------GGGGUGAUUC-AGAAAAUAACGGGAGAGGU d.16.e.I.hoferi.fasta GGACGGUU------------GGGGGCAUUA-AUAUUUAAUUGUCAGAGGU d.16.e.Dermocystidium.sp.fasta GGAUAGUU------------GGGGGCAUUA-GUAUUUAAUUGUCAGAGGU d.16.e.S.destruens.fasta GGAUAGUU------------GGGGGCAUUA-GUAUUUAAUUGUCAGAGGU d.16.e.A.unguiculata.fasta GGACAGUU------------GGGGGCAUUA-GUAUUUAAUUGUCAGAGGU d.16.e.D.grandis.fasta GGACAGUU------------GGGGGCAUUA-GUAUUUAAUUGUCAGAGGU d.16.e.A.macrogynus.fasta GGAUAGUU------------GGGGGCAUUA-GUAUUUAAUUGUCAGAGGU d.16.e.B.emersonii.fasta GGAUAGUU------------GGGGGCAUUA-GUAUUUAAUUGUCAGAGGU d.16.e.C.albicans.fasta GGACGGU------------CGGGGGUAUCA-GUAUUCAGUUGUCAGAGGU d.16.e.S.cerevisiae.fasta GGACGGU------------CGGGGGCAUCA-GUAUUCAAUUGUCAGAGGU d.16.e.N.crassa.fasta GGACAGU------------CGGGGGCAUCA-GUAUUCAAUUGUCAGAGGU d.16.e.P.anserina.fasta GGACAGU------------CGGGGGCAUCA-GUAUUCAAUUGUCAGAGGU d.16.e.C.immitis.fasta GGAUAGU------------CGGGGGCGUCA-GUAUUCGGCUGUCAGAGGU d.16.e.L.major.fasta GGGUAGUU-----------CGGGGGAGAAC-GUACUGGGGCGUCAGAGGU d.16.e.T.cruzi.fasta GGGUAGUU-----------CGGGGGAGAAC-GUACUGGUGCGUCAGAGGU d.16.e.T.brucei.fasta GGGUAGUU-----------CGGGGGAGAAC-GUACUGGUGCGUCAGAGGU d.16.e.P.carinii.fasta GGACAGU------------UGGGGGCAUUA-GUAUUCAAUUGUCAGAGGU d.16.e.C.neoformans.fasta GGACGGUC------------GGGGGCAUUG-GUAUUCCGUUGCUAGAGGU d.16.e.Fungus.sp.QPX.fasta GGACGGUC------------GGGGGCAUUA-GUAUUCCGUUGCUAGAGGU d.16.e.U.maydis.fasta GGACAGCC------------GGGGGCAUUA-GUAUUUGCACGCUAGAGGU d.16.e.M.leidyi.fasta GGACAGUU------------GGGGGCAUUC-GUAUUUCAUUGUCAGAGGU d.16.e.T.cystophora.fasta GGACAAUU------------GGGGGCAUUC-GUAUUUCGUUGUCAGAGGU d.16.e.M.prolifera.fasta GGACAGUU------------GGGGGCAUUC-GUAUUUAAUUGUCAGAGGU d.16.e.P.haeckeli.fasta GGACAGUU------------GGGGGCAUUA-AUAUUUAAUUGUCAGAGGU d.16.e.E.rotunda.fasta GGAUAGUU------------GGGGGUGCUA-GUAUUCCACGGCCAGAGGU d.16.e.P.chromatophora.fasta GGAUAGUU------------GGGGGUGCUA-GUAUUCAGCGGCCAGAGGU d.16.e.A.majus.fasta GGACAGUY------------GGGGGCAUUC-GUAUUUCAUAGUCAGAGGU d.16.e.S.indicum.fasta GGACAGUC------------GGGGGCAUUC-GUAUUUCAUAGUCAGAGGU d.16.e.D.grandiflora.fasta GGACAGUC------------GGGGGCAUUC-GUAUUUCAUAGUCAGAGGU d.16.e.Pla.lanceolata.fasta GGACAGUC------------GGGGGCAUUC-GUAUUUCAUAGUCAGAGGU d.16.e.N.tabacum.fasta GGACAGUC------------GGGGGCAUUC-GUAUUUCAUAGUCAGAGGU d.16.e.A.thaliana.fasta GGACAGUC------------GGGGGCAUUC-GUAUUUCAUAGUCAGAGGU d.16.e.S.alba.fasta GGACAGUC------------GGGGGCAUUC-GUAUUUCAUAGUCAGAGGU d.16.e.S.tuberosum.fasta GGACAGUC------------GGGGGCAUUC-GUAUUUCAUAGUCAGAGGU d.16.e.F.x.ananassa.fasta GGACAGUC------------GGGGGCAUUC-GUAUUUCAUAGUCAGAGGU d.16.e.G.max.fasta GGACAGUC------------GGGGGCAUUC-GUAUUUCAUAGUCAGAGGU d.16.e.O.sativa.fasta GGACAGUC------------GGGGGCAUUC-GUAUUUCAUAGUCAGAGGU d.16.e.Z.mays.fasta GGACAGUC------------GGGGGCAUUC-GUAUUUCAUAGUCAGAGGU d.16.e.A.verticilliflorum.fast GGACAGUC------------GUGGGCAUUC-GUAUUUCAUAGUCAGAGGU d.16.e.G.spirotaenia.fasta GGACAGUU------------GGGGGCAUUC-GUAUUUCAUUGUCAGAGGU d.16.e.Staurastrum.sp.M752.fas GGACAGUU------------GGGGGCAUUC-GUAUUUCAUUGUCAGAGGU d.16.e.C.paradoxa.fasta GGAUAGUU------------GGGGGCAUUC-AUAUUCCGUUGUCAGAGGU d.16.e.G.nostochinearum.fasta GGAUAGUU------------GGGGGCAUUC-AUAUUCCGUUGUCAGAGGU d.16.e.G.wittrockiana.fasta GAUCAGUU------------GGGGGCAUUC-AUAUUCCCUUGUCAGAGGU d.16.e.C.luteoviridis.fasta GGACGGUC------------GGGGGCGCUC-GUAUUUCGUUGUCAGAGGU d.16.e.O.longa.fasta GGAUAGUU------------GGGGGCAUUA-GUAUUUAAUUGUCAGAGGU d.16.e.P.weissei.fasta GGACAGUU------------GGGGGCAUUA-GUAUUUAAUUGUCAGAGGU d.16.e.C.citrina.fasta GGAUAGUU------------GGGGGCAUUA-GUAUUUAAUUGUCAGAGGU d.16.e.G.steinii.fasta GGAUAGUU------------GGGGGCAUUA-GUAUUUAAUUGUCAGAGGU d.16.e.Ple.lanceolata.fasta GGAUAGUU------------GGGGGCAUUA-GUAUUUAAUUGUCAGAGGU d.16.e.O.quadricornutus.fasta GGAUAGUU------------GGGGGCAUUA-GUAUUUAAUUGUCAGAGGU d.16.e.S.lemnae.fasta GGAUAGUU------------GGGGGCAUUA-GUAUUUAAUUGUCAGAGGU d.16.e.S.mytilus.fasta GGAUAGUU------------GGGGGCAUUA-GUAUUUAAUUGUCAGAGGU d.16.e.E.mobilis.fasta GGAUAGUU------------GGGGGCAUUA-GUAUUUAAUUGUCAGAGGU d.16.e.O.granulifera.1.fasta GGAUAGUC------------GGGGGCAUUA-GUAUUUAAUUGUCAGAGGU d.16.e.O.granulifera.2.fasta GGAUAGUC------------GGGGGCAUUA-GUACUUAAUUGUCAGAGGU d.16.e.U.gallina.fasta GGAUAGUU------------GGGGGCAUUA-GUAUUUAAUUGUCAGAGGU d.16.e.U.pisces.fasta GGAUAGUU------------GGGGGCAUUA-GUAUUUAAUUGUCAGAGGU d.16.e.P.lepisma.fasta GGAUAGUU------------GGGGGCAUUA-GUAUUUAAUUGUCAGAGGU d.16.e.U.grandis.fasta GGAUAGUU------------GGGGGCAUUA-GUAUUUAAUUGUCAGAGGU d.16.e.B.coli.fasta GGACAGUU------------GGGGGCAUUA-GUAUUUAAUUGUCAGAGGU d.16.e.E.aediculatus.fasta GGACAGCGUUUAUUUCACAAGGAGGCAUUA-GUAUUUAAUUUCCAGAGGU d.16.e.T.thermophila.fasta GGACAGUU------------GGGGGCAUUA-GUAUUUAAUAGUCAGAGGU d.16.e.Bangia.sp.NWT.fasta GGAUGGUU------------GGGGGCAUUC-GUAUUUCAUUGUCAGAGGU d.16.e.Bangia.sp.VIS7.fasta GGAUUGUU------------GGGGGCAUUC-GUAUUUCAUUGUCAGAGGU d.16.e.E.carnea.fasta GGAUAGUU------------GGGGGCACUC-GUAUUUCAUUGUCAGAGGU d.16.e.R.parvula.fasta GGAUAGUU------------GGGGGCACUC-GUAUUUCAUUGUCAGAGGU d.16.e.C.coeruleus.fasta GGACAGUU------------GGGGGCAUUC-NNNNNNNNNNNNNNNNNNN d.16.e.P.aerugineum.1.fasta GAACGGUC------------GGGGGCACUC-GUAUUUCAUUGUCAGAGGU d.16.e.R.maculata.fasta GGACGGUU------------GGGGGCAUUC-GGAUUCCGUUGUCAGAGGU d.16.e.A.ambigua.fasta GGACAGU-----------UUGGGGAUAUUC-CUAUUCAAUUGUCAGAGGU d.16.e.A.baicalensis.fasta GGACAGU-----------UUGGGGAUAUUC-GUAUUCAAUUGUCAGAGGU d.16.e.S.nipponica.fasta GGACAGU-----------U-GGGGGUAUUC-GUAUUCAAUUGUCAGAGGU d.16.e.C.radiatus.fasta GGAUAGU-----------U-GUGGGUAUUU-GUAUUGCGAUGUCAGAGGU d.16.e.C.criophilum.fasta GGACAGU-----------U-GGGGGUAUUU-GUAUUCCAUUGUCAGAGGU d.16.e.A.capitellata.fasta GGACAGU-----------U-GUGGGUAUUC-GUAUUCCAUUGUCAGAGGU d.16.e.S.pupula.fasta GGACAGU-----------U-GGGGGUAUUU-GUAUUCCAUUGUCAGAGGU d.16.e.T.antarctica.fasta GGACAGU-----------U-GGGGGUAUUU-GUAUUCCAUUGUCAGAGGU d.16.e.E.triangulatum.fasta GGACAGU-----------U-GGGGGUAUUC-GUAUUCCAUUGUCAGAGGU d.16.e.A.bongranii.fasta GGACAGU-----------U-GGGGGUAUUC-GUAUUCCAUUGUCAGAGGU d.16.e.Pseudogomphonema.sp.fas GGACAGU-----------U-GGGGGUAUUC-GUAUUCCAUUGUCAGAGGU d.16.e.D.tenue.fasta GGACAGU-----------U-GGGGGUAUUC-GUAUUCCAUUGUCAGAGGU d.16.e.G.marina.fasta GGACAGU-----------U-GGGGGCAUUC-GUAUUCCAUUGUCAGAGGU d.16.e.Thalassionema.sp.fasta GGACAGU-----------U-GGGGGUAUUCCGUAUUCCAUUGUCAGAGGU d.16.e.R.belgicae.fasta GGACAGU-----------U-GGGGGUAUUC-GUAUUCCAUUGUCAGAGGU d.16.e.Undatella.sp.fasta GGACAGU-----------U-GGGGGUAUUU-GUAUUCCAUUGUCAGAGGU d.16.e.C.belgica.fasta GGACAGU-----------U-GGGGAUAUUC-GUAUUUCGUUGUCAGAGGU d.16.e.O.sinensis.fasta GGACAGU-----------U-GGGGGUAUUC-GUAUUGUGCUGUCAGAGGU d.16.e.D.brightwellii.fasta GGACAGU-----------U-GGGGGUAUUC-GUAUUCAGUUGUCAGAGGU d.16.e.L.undulatum.fasta GGACAGU-----------U-GGGGGUAUUC-GUAUUCAGUUGUCAGAGGU d.16.e.T.eccentrica.fasta GGACAGU-----------U-GGGGGUAUUC-GUAUUUCAUUGUCAGAGGU d.16.e.T.pseudonana.fasta AGACAGG-----------C-GGGGCUAUUC-GUAUUGCAUUGUCAGAGGU d.16.e.S.costatum.fasta GGACAGU-----------U-GGGGGUAUUC-GUAUUUCAUUGUCAGAGGU d.16.e.P.laevis.fasta GAACAGU-----------C-GGGGGUAUUC-AUAUUCCAUUGUCAGAGGU d.16.e.L.borealis.fasta GGACAGU-----------C-GGGCAUAUUU-GUAUUUCGUUGCUAGAGGU d.16.e.P.pseudodenticulata.fas GGACAGU-----------U-GGGCGUAUUC-GUAUUUCGUUGCUAGAGGU d.16.e.B.mediterranea.fasta GGACAGU-----------U-GGGGGUAUUU-GUAUUCCGUUGUCAGAGGU d.16.e.B.pacifica.fasta GGACAGU-----------U-GGGGGUAUUU-GUAUUCCGUUGUCAGAGGU d.16.e.L.minuta.fasta GAACAGU-----------UUGAGGAUAUUC-GUAUGAACAUGUCAGAGGU d.16.e.L.danicus.fasta GAACAGUG----------UUGUGGGUAUUC-GUAUUUCGUUGUCAGAGGU d.16.e.Chaetoceros.sp.fasta GGACAGU-----------U-GGGGGUAUUC-GUAUUCAGUUGUCAGAGGU d.16.e.A.invadans.fasta GGACAGU-----------U-GGGGGUAUUC-AUAUUUCAACGUCAGAGGU d.16.e.L.giganteum.fasta GGACAGU-----------U-GGGGGUAUUC-AUAUUUCAACGUCAGAGGU d.16.e.M.varians.fasta GAACAGU-----------U-GGGGGUAUUU-GUAUUCCAGUGUCAGAGGU d.16.e.B.hominis.fasta GAACAGU-----------U-GGGGGUAUUC-AUAUUCACUAGUUAGAGGU d.16.e.P.marinus.fasta GGACAGUC------------GGGGGCAUUC-GUAUUUAACUGUCAGAGGU d.16.e.T.gondii.fasta GGACGGUU------------GGGGGCAUUC-GUAUUUAACUGUCAGAGGU d.16.e.A.fundyense.fasta GGAUAGUU------------GGGGGCAUUC-GUAUUUGAUUGUCAGAGGU d.16.e.B.bigemina.fasta GAACGGUU------------GGGGGCAUUC-GUAUUUAACUGUCAGAGGU d.16.e.B.canis.fasta GAACGGUU------------GGGGGCAUUC-GUAUUUAACUGUCAGAGGU d.16.e.Babesia.sp.OKD.fasta GAACGGUU------------GGGGGCAUUC-GUAUUUAACUGUCAGAGGU d.16.e.B.microti.1.fasta GAGCAGUU------------GGGGGCAUUC-GUAUUUAACUGUCAGAGGU d.16.e.B.microti.2.fasta GAGCAGUU------------GGGGGCAUUC-GUAUUUAACUGUCAGAGGU d.16.e.B.microti.3.fasta GAGCAGUU------------GGGGGCAUUC-GUAUUUAACUGUCAGAGGU d.16.e.B.microti.4.fasta GAGCAGUU------------GGGGGCAUUC-GUAUUUAACUGUCAGAGGU d.16.e.B.microti.5.fasta GAGCAGUU------------GGGGGCAUUC-GUAUUUAACUGUCAGAGGU d.16.e.B.rodhaini.fasta GAGCAGUA------------GGGGGCAUUC-GUAUUUAACUGUCAGAGGU d.16.e.B.gibsoni.fasta GAGCAGUU------------GGGGGCAUUC-GUAUUUAACUGUCAGAGGU d.16.e.B.bovis.fasta GAACGGUU------------GGGGGCAUUC-GUACUCGACUGUCAGAGGU d.16.e.J.libera.fasta GGAUAGUU------------GGGGGCAUUC-GUAUUCAGGUGUCAGAGGU d.16.e.R.americana.fasta GGACAGUU------------GGGGGCAUUU-GUAUUUCCAUGUCAGAGGU d.16.e.B.ostreae.fasta AAACAAUU------------GGGGGUGCUA-GUAUCGCCGGGCCAGAGGU d.16.e.A.dasyae.fasta GGACGGUU------------GGGGGCAUUU-GUAUUCCAGCGUCAGAGGU d.16.e.A.hermannii.fasta GGACGGUU------------GGGGGCAUUU-GUAUUCCAGCGUCAGAGGU d.16.e.N.helminthoides.fasta GGACGGUU------------GGGGGCAUUU-GUAUUCCAGCGUCAGAGGU d.16.e.B.gelatinosum.fasta GGACGGUU------------GGGGGCAUUU-GUAUUCCGGCGUCAGAGGU d.16.e.N.tortuosa.fasta GGACGGUU------------GGGGGCAUUU-GUAUUCCGGCGUCAGAGGU d.16.e.T.hispida.fasta GGACGGUU------------GGGGGCAUUU-GUAUUCCGGCGUCAGAGGU d.16.e.T.violacea.4.fasta GGACGGUU------------GGGGGCAUUU-GUAUUCCGGCGUCAGAGGU d.16.e.T.violacea.1.fasta GGACGGUU------------GGGGGCAUUU-GUAUUCCGGCGUCAGAGGU d.16.e.T.violacea.2.fasta GGACGGUU------------GGGGGCAUUU-GUAUUCCGGCGUCAGAGGU d.16.e.N.shawii.fasta GGACGGUU------------GGGGGCAUUU-GUAUUCCGGCGUCAGAGGU d.16.e.B.investiens.fasta GGACGGUU------------GGGGGCAUUU-GUAUUCCAGCGUCAGAGGU d.16.e.B.macrosporum.fasta GGACGGUU------------GGGGGCAUCU-GUAUUCCGGCGUCAGAGGU d.16.e.A.plicata.fasta GGACGGUU------------GGGGGCAUUU-GUAUUCCGGCGUCAGAGGU d.16.e.C.officinalis.fasta GGACAGUU------------GGGGGCAUUU-GUAUUCAGGCGCUAGAGGU d.16.e.R.carriebowensis.fasta GGACAGUU------------GGGGGCACUU-GUAUUCCGGCGCUAGAGGU d.16.e.B.hamifera.fasta GGACGGUU------------GGGGGCAUUU-GUAUUCCGGCGUCAGAGGU d.16.e.G.vagum.fasta GGACGGUU------------GGGGGCAUUU-GUAUUCUGCCGUCAGAGGU d.16.e.C.crispus.fasta GGACGGUU------------GGGGGCAUUU-GUAUUCCGGCGUCAGAGGU d.16.e.H.plana.fasta GGAUGGUU------------GGGGGCAUUU-GUAUUCCAGCGUCAGAGGU d.16.e.R.leptophylla.fasta GGAUGGUU------------GGGGGCAUUU-GUAUUCCAGCGUCAGAGGU d.16.e.P.pulvinata.fasta GGACGGUU------------GGGGGCAUUU-GUAUUCCGGCGUCAGAGGU d.16.e.C.rubrum.fasta GGACGGUU------------GGGGGCAUUU-GUAUUCCGGCGUCAGAGGU d.16.e.Gracilariopsis.sp.fasta GGACGGUU------------GGGGGCAUUC-GUAUUCCGGCGCUAGAGGU d.16.e.B.moritziana.fasta GGACGGUC------------GGGGGCAUUU-GUAUUCCAGCGUUAGAGGU d.16.e.H.rubra.fasta GGACGGUU------------GGGGUCAUUU-GUAUUAAGUCGUCAGAGGU d.16.e.D.grisea.fasta GGAUGGUU------------GGGGGCAUUC-GUAUUCCAGAGUCAGAGGU d.16.e.N.fowleri.fasta AGCUCAGGG-----------UGAGGCCCCGGGUACCAUGAGGCUAGAGGU d.16.e.N.gruberi.fasta AGCUCAGGG-----------UGAGGCCCCGGGUACCAUGAGGCUAGAGGU a.16.e.Hexamita.sp.fasta GGCGGCGC------------GGGACUGAUA-GUAUUUGGUGGGGACAGGU d.16.e.T.foetus.fasta GAGCCACC------------GGGGGUAGAU-CUAUUUCAUGGCGAACGGU d.16.e.A.khaliulini.fasta GANAGGGA------------AGGGGUAAUG-UUAUUUGGUAGCGAGAGGU d.16.e.E.aedis.fasta GACAGGGA------------CGGGGUAAUU-UUAUUUGGUAGCGAGAGGU d.16.e.A.connecticus.fasta GACAGGGA------------AGAGGCGAUG-AUAUUUGGUAGCGAGAGGU d.16.e.I.barri.fasta GACAGGGA------------GGGGGUAAUG-AUAUUUGGUAGCGAGAGGU d.16.e.A.ferocious.fasta GAUAGGGA------------CGGGGCAAUG-AUAUUCGGCAGCGAGAGGU d.16.e.Amblyospora.sp.fasta GACGGGGA------------UGUGGUAAUG-UUAUUUGGUAGCGAGAGGU d.16.e.C.lunata.fasta GACAGAGG------------AGAGGUAACG-AAAUUCGAUGGCGAGAGGU d.16.e.P.anophelis.fasta GAGCGCGA------------GACGCCGGUG-GUAUUCGGUAGCGAGGGGU d.16.e.Hazardia.sp.fasta GACCGGAG------------CGGGGCAAUG-GUAUUCGGCAGCGAGGGGU d.16.e.H.milleri.fasta GACCGGAG------------CGGGGCAAUG-GUAUUCGGCAGCGAGGGGU d.16.e.P.simulii.fasta GAGCAGUU------------GAGGGCGAUG-GUAUUCCUGUGCGAGAGGU d.16.e.W.palustris.fasta GAGCAGUU------------GAGGGCGAUG-GUAUUCCUGUGCGAGAGGU d.16.e.Nosema.sp.03.fasta --GGUAUA------------CUGU---------AUGGUUAGGAGAGAGAU d.16.e.Nosema.sp.05.fasta --GGUAUA------------CUGU---------AUGGUUAGGAGAGAGAU d.16.e.Endoreticulatus.sp.fast --GGUAUA------------CUGU---------AUGGUUAGGAGAGAGAU d.16.e.Nosema.sp.02.fasta --GGUAUA------------CUGU---------AUGGUUAGGAGAGAGAU d.16.e.N.spodopterae.fasta --GGUAUA------------CUGU---------AUGGUUAGGAGAGAGAU d.16.e.N.trichoplusiae.fasta --GGUAUA------------CUGU---------AUGGUUAGGAGAGAGAU d.16.e.N.bombycis.27.fasta --GGUAUA------------CUGU---------AUGGUUAGGAGAGAGAU d.16.e.N.bombycis.02.fasta --GGUAUA------------CUGU---------AUGGUUAGGAGAGAGAU d.16.e.V.imperfecta.fasta --GGUAUA------------CUGU---------AUGGUUAGGAGAGAGAU d.16.e.N.furnacalis.fasta --GGUAUA------------UUGU---------AUGGUUAGGAGAGAGAU d.16.e.Microsporidium57864.fas --GGUGUA------------CUGU---------AUAGUUGGGAGAAAGAU d.16.e.Vairimorpha.sp.C21.fast --GGUGUA------------CUGU---------AUAGUUGGGAGAAAAAU d.16.e.N.oulemae.fasta --GGUGUA------------CUGU---------AUAGUUGGGAGAGAGAU d.16.e.N.necatrix.fasta --GGUGUA------------CUGU---------AUAGUUGGGAGAGAGAU d.16.e.V.necatrix.fasta --GGUGUA------------CUGU---------AUAGUUGGGAGAGAGAU d.16.e.N.apis.fasta --GGUGUA------------CUGU---------AUAGUUGGGAGAGAGAU d.16.e.O.occidentalis.fasta --GGUGUA------------CUGU---------AUAGUUGGGAGAGAGAU d.16.e.Microsporidium.sp.DP119 AGGGAAAA------------UUGU---------AUAGCUAGGUGAAGAAU d.16.e.V.corneae.fasta GGGGAACA------------UAGU---------AUACCAGGGCGAGAGAU d.16.e.A.michaelis.fasta GAGCAAUU------------UGGUGUCAGC-UAAUGGUAUGGGGAGGGGU d.16.e.T.contejeani.fasta AAGCCAUG------------GAAGGAAAUA-GGAUUAAAUAGGGAGGGGU d.16.e.E.hellem.fasta AGAGGACG------------AGGGG-CACU-GGAUAGUUGGGCGAGGGGU d.16.e.Encephalitozoon.sp.fast AGAGGACG------------AGGGG-CACC-GGAUAGUUGGGCGAGGGGU d.16.e.E.cuniculi.fasta AGAGGACG------------AGGGG-CACU-GGAUAGUUGGGCGAGAGGU d.16.e.O.colligata.fasta AACGGAGG------------GGGUG-CACU-GGAUAGCUGGGCGAGAGGU d.16.e.E.salmonis.fasta AGGGAGCA------------UGGU---------AUAGGUUGGCGAAGAAU d.16.e.N.salmonis.fasta AGGGAGCA------------UGGU---------AUAGGUUGGCGAAGAAU d.16.e.Enterocytozoonidae.sp.f AGGGAGCA------------UGGU---------AUAGGGCGGCGAAGAAU d.16.e.E.bieneusi.fasta AGGGAGUG------------UAGU---------AUAGACUGGCGAAGAAU d.16.e.B.algerae.fasta AGCGAUUG------------AAGGC-GAUU-GUAUUCACCAGCCAGAGGU d.16.e.T.solenopsae.fasta AGCGGAUG------------AAGGU-AAUU-GUAUUCACCAGCAAGAGGU d.16.e.V.acridophagus.fasta AGCGGAUG------------GAGGC-ACUU-GUAUUCAAUAGCGAGAGGU d.16.e.Bacillidium.sp.fasta AACAGAUG------------AUGGC-AAUA-GUAUUCAAUAGUUAGAGGU d.16.e.P.cristatellae.fasta AACAGAUG------------AUGGC-AAUA-GUAUUCAGCAGUUAGAGGU d.16.e.Pleistophora.sp.fasta AGGGGGCA------------CAGU---------AUACCAGGGCGAGAGAU d.16.e.O.operophterae.fasta GGGGGGCA------------CGGU---------AUAGGCAGGCGAGAGAU d.16.e.F.magnivora.fasta GCGGAAGA------------GGGCG--ACU-GUAUUGCGUAGCGAGAGGU d.16.e.G.atherinae.fasta GAGCGUUU------------AGGGGCCAGG-UUAUUAAGCGACGAGGGGU d.16.e.Ichthyosporidium.sp.fas GAGUGUUU------------AGGGGCCAGG-GUAUUAAACGGCAAGCGGU d.16.e.L.acerinae.fasta GAGCGUCU------------AGGGGCCAGG-GUAUUAAGCGACGAGGGGU d.16.e.H.anguillarum.fasta GAGCGUUU------------UGGGGCCAGG-UUAUUAAGCGACGAGAGGU d.16.e.P.mirandellae.fasta GAGCGUUU------------UGGGGUCAGG-UUAUUAAGCGACGAGAGGU d.16.e.T.hominis.fasta GAGCGGCC------------GGGGGCCAGG-UUAUUAAGCGACGAGAGGU d.16.e.V.culicis.fasta GAGCGGCC------------GGGGGCCAGG-UUAUUAAGCGACGAGAGGU d.16.e.P.hippoglossoideos.fast GAGCGGCC------------GGGGCACAGG-UUAUUAAGCGACGAGAGGU d.16.e.Microgemma.sp.fasta GAGCGAAG------------GAGGGCUAGA-UUAUUGAGCAGCGAGAGGU d.16.e.S.lophii.fasta GAGYGAAG------------GAGGGCUAGA-UUAUUGAGCAGCGAGAGGU d.16.e.Pleistophora.sp.LS.fast GAGCGACC------------GGGGGCCGGC-UUAUUAUGUGACGAGGGGU d.16.e.D.gammarellum.fasta GAGCGACC------------AGGGGCUAGA-GUAUUGAAUGGCGAGAGGU d.16.e.M.prosopium.fasta GAGCGAUC------------AGGGGCUAGU-UUAUUAAGCGACGAAAGGU d.16.e.A.scoticae.fasta GAACGGAC------------GACGGGCGCG-GGAUCUGGGGGCGAGAGGU d.16.e.P.whitei.fasta GAACGGAC------------AACGGCCGCG-GGAUCCGGGGGCGAGAGGU a.16.c.C.coccineum.fasta UAUAUG---UGUAGAGAUCAGAAAGAA-CACCAAC-GGCGAAAGCAC--- a.16.c.C.ruber.fasta AAAAUG---CAUAGAGAUCGGAAAGAA-CACCAAU-GGCGAAGGCAC--- d.16.c.N.tabacum.fasta GAAAUG---CGUAGAGAUCGGAAAGAA-CACCAAC-GGCGAAAGCAC--- d.16.c.S.oleracea.fasta GAAAUG---CGUAGAGAUCGGAAAGAA-CACCAAC-GGCGAAAGCAC--- d.16.c.Z.mays.fasta GAAAUG---CAUUGAGAUCGGAAAGAA-CACCAAC-GGCGAAAGCAC--- d.16.c.M.polymorpha.fasta GAAAUG---CGUAGAGAUCGGAAAGAA-CACCAAU-GGCGAAAGCAC--- d.16.c.R.communis.fasta GAAAUG---CGUAGAGAUCGGAAAGAA-CACCAAC-GGCGAAAGCAC--- d.16.c.C.vulgaris.fasta GAAAUG---CGUAGAGAUCGGGAGGAA-CACCAAA-GGCGAAAGCAC--- d.16.c.P.wickerhamii.fasta GAAAUG---CGUAGAUAUCGGGAGGAA-CACCAAA-GGCGAAGGCAC--- d.16.c.P.minor.fasta GAAAUG---CGUAGAGAUCGGGAAGAA-CACCGAU-GGCGAAAGCAC--- d.16.c.N.olivacea.fasta GAAAUG---UGCAGAUCUCGGGAAGAA-CCCCUAA-GGCGAAAGCAC--- d.16.c.P.parkeae.fasta GAAAUG---CGUAGAUAUCGGGAAGAA-CACCAAU-GGCGAAAGCAC--- d.16.c.C.reinhardtii.fasta GAAAUG---CGUAGAGAUAUGGAGGAA-CACCAGU-GGCGAAGGCGC--- b.16.m.A.castellanii.fasta GAAAUU---UUUCGAUAUUUAAAGGACAUGCAAUA-GGCGAAGGCUG--- d.16.c.P.thurberi.fasta UAAAUG---UUUUAA-AUAUAAGGGAC-UGCCAAU-GGUGAAGACAA--- b.16.m.C.crispus.fasta AAAAUG---UUUUGAUACUUAAAAGAA-UUUCAAC-AGCGAAAGCAG--- d.16.c.T.gondii.fasta GAAAUG---CGAAGAUACAAAAAAGAA-GAUCAAC-AGCGAAAGCAU--- b.16.m.N.crassa.fasta AAAAUU---CUGUGAUACCUAGGGGAC-GGGUAAA-GGCGAAGGCAA--- b.16.m.P.anserina.fasta GUAAUU---CAUUAAUACCUAGGGGAC-UGGUAAA-GGCGAAGGCAA--- b.16.m.P.chrysogenum.fasta AAAAUU---UGAUGAUACCAGGAGGAC-UGUCAAC-GGCGAAGGCGU--- b.16.m.E.nidulans.fasta AUAAUA---CGUAUAUACCAGAGAGAC-UGGUAAC-GGCGAAGGCAU--- b.16.m.S.cerevisiae.fasta GAAAUAA--UAAUAAUAAUUAUAAGAC-UAAUAUA-UGUGAAAAUAU--- b.16.m.W.saturnus.m.fasta GAAAUA---UUAUGAUAAUUAUAGGAC-AGUCAAA-AUUGAAAAUAU--- b.16.m.P.minor.fasta AAAAUG---UUUUAAUCUAAAUUCGAA-AACUAAA-AGUUAU--UCU--- d.16.c.P.falciparum.fasta GAAAUA---CAAUGAUACAAAAAAGAA-UAUCAAA-GGCGGAAGCAU--- d.16.c.B.bovis.fasta GAAAUAUGAUUUCUAUACAUUAAAGAA-GGCCAAA-AAUGAAAGUAU--- b.16.m.T.pyriformis.fasta UAAAUG---UAGUUACACUAUAUAGCU-AGCCAUA-AACUAAGGUGC--- d.16.m.S.sinuspaulianus.fasta UAAAUC---UCAAGAGUUUAGAUGGAA-UACUAAC-GGUUAAAGCUU--- b.16.m.P.tetraurelia.fasta AAAAUA----CAGGGAGUUUACAGGAA-CAUUCGA-CGCGAAAGCGA--- b.16.m.D.discoideum.fasta AAAAUUCA--AUUUAGAUUAGUUUGAC-UGACAGU-UGGCGAAGGCA--- d.16.m.P.polycephalum.fasta GAAAUC---UGUUGAUAUCUGGAAGAC-AUUCGAU-AGCGAAAGCAA--- b.16.m.P.littoralis.fasta AAACUC---CGGAUAAGUAAAAGAGAA-CAUCAGC-UGCGAAAGAUU--- b.16.m.P.wickerhamii.fasta AAAAUU---UGUUGAUCUCAGGAGGAA-UACCUAA-AGCGAAAGCAG--- d.16.c.H.africana.fasta UAAAUG---CGUUGAGAUUGGAAAGAA-CACCAAG-GGCGAAAGCAC--- d.16.c.C.fragile.fasta GAAAUA---CGUAGAUAUCGGGGGGAA-CACCAGU-AGCGAAAGCGC--- d.16.c.C.sertularioides.fasta GAAAUG---CGUAGAUAUCGAGAAGAA-CACCAGG-GGCGAAAGCGC--- d.16.c.C.humicola.fasta GAAAUG---UGUAGAUUUUAGGGAGAA-CACCAGC-GGCGAAGGCGC--- d.16.c.P.uvella.fasta GAAAUG---UGUAGAUAUUAGGAGGAA-CACCAGA-GGCGAAAGCGC--- a.16.c.G.nostochinearum.fasta GAAAUG---CGUAGAUAUCGGGAAGAA-CACCAAU-GGCGAAAGCAC--- a.16.c.G.wittrockiana.fasta GAAAUG---CGUAGAUAUUGGGAAGAA-CACCAAA-AGCGAAAGCAC--- d.16.c.C.paradoxa.fasta GAAAUG---CGUAGAUAUCAGGAAGAA-CACCGAU-GGCGAAAGCAC--- d.16.y.C.paradoxa.fasta GAAAUG---CGUAGAUAUCAGGAAGAA-CACCGAU-GGCGAAAGCAC--- d.16.c.Cryptomonas.sp.fasta GAAAUG---CGUAGAUAUUAGGAAGAA-CACCAAU-GGCGAAAGCAC--- d.16.c.P.palmata.fasta GAAAUG---CGUAGAUAUUGGGAAGAA-CACCAGA-GGCGAAAGCGC--- d.16.c.H.akashiwo.fasta GAAAUG---CGUAGAUAUUGGAAAGAC-CACCAAU-GGCGAAGGCAC--- d.16.c.S.pseudocostatum.fasta GAAAUG---CGUAGAUAUUGGAAAGAA-CACCGAU-GGCGAAAGCAC--- d.16.c.P.littoralis.fasta GAAAUG---CGUAGAGAUUGGAAGGAC-CACCGAU-GGCGAAGGCAC--- d.16.c.C.caldarium.fasta GAAAUG---CGUAGAUAUUGAGAAGAA-UACCGAU-AGCGAAGGCGC--- a.16.c.E.huxleyi.fasta GAAAUG---CGUAGAUAUUAGAAAGAA-CACCGGC-GGCGAAAGCGC--- d.16.c.E.gracilis.fasta GAAAUG---CGUAGAGAUUGGAAAGAA-CACCAAU-GGCGAAGGCAC--- d.16.b.Anabaena.sp.fasta GAAAUG---CGUAGAGAUCAGGAAGAA-CACCGGU-GGCGAAAGCGC--- d.16.b.Chlorogloeopsis.PCC7518 GAAAUG---CGUAGAGUUCAGGAAGAA-CACCGGU-GGCGAAAGCGC--- d.16.b.Synechococcus.sp.fasta GAAAUG---CGUAGAUAUCUGGAAGAA-CACCAGC-GGCGAAAGCGC--- d.16.b.Synechocystis.PCC6803.G GAAAUG---CGUAGAUAUUGGGAAGAA-CAUCGGU-GGCGAAAGCGU--- d.16.b.O.agardhii.fasta GAAAUG---CGUAGAGAUCAGGAAGAA-CACCGGU-GGCGAAGGCGC--- d.16.b.Pleurocapsa.7516.fasta GAAAUG---CGUAGAUAUUGGGAAGAA-CACCAGU-GGCGAAGGCGC--- d.16.b.M.aeruginosa.fasta GAAAUG---CGUAGAGAUUGGGAAGAA-CAUCGGU-GGCGAAAGCGU--- b.16.m.C.reinhardtii.fasta CAAAUG---AGAAUAUUCCGG-AUGGAAAGCCGAA-GGCGAAAGCAC--- d.16.m.C.eugametos.fasta AAAAUA---AGCAAAUAUGGAUGAGGAACGCCAAA-GGCAUAAGCAU--- b.16.m.M.senile.fasta AGAAUG---UGAGGAUAGAAA-AUAGAACACCUAA-GGUUAAAAC-U--- d.16.b.S.pneumoniae.fasta GAAAUG---CGUAGAUAUAUG-GAGGAACACCGGU-GGCGAAAGCGG--- d.16.b.S.pyogenes.fasta GAAAUG---CGUAGAUAUAUG-GAGGAACACCGGU-GGCGAAAGCGG--- d.16.b.B.anthracis.fasta NAAAUG---CGUAGAGAUAUG-GAGGAACACCAGU-GGCGAAGGCGA--- d.16.b.B.cereus.1.fasta GAAAUG---CGUAGAGAUAUG-GAGGAACACCAGU-GGCGAAGGCGA--- d.16.b.E.faecalis.fasta GAAAUG---CGUAGAUAUAUG-GAGGAACACCAGU-GGCGAAGGCGG--- d.16.b.E.faecium2.fasta GAAAUG---CGUAGAUAUAUG-GAGGAACACCAGU-GGCGAAGGCGG--- d.16.b.L.monocytogenes.fasta GAAAUG---CGUAGAUAUGUG-GAGGAACACCAGU-GGCGAAGGCGA--- d.16.b.B.subtilis.fasta GAAAUG---CGUAGAGAUGUG-GAGGAACACCAGU-GGCGAAGGCGA--- d.16.b.B.subtilis.GEN.fasta GAAAUG---CGUAGAGAUGUG-GAGGAACACCAGU-GGCGAAGGCGA--- d.16.b.B.halodurans.fasta GAAAUG---CGUAGAGAUGUG-GAGGAACACCAGU-GGCGAAGGCGA--- d.16.b.S.aureus.fasta GAAAUG---CGCAGAGAUAUG-GAGGAACACCAGU-GGCGAAGGCGA--- d.16.b.S.aureus.GEN.fasta GAAAUG---CGCAGAGAUAUG-GAGGAACACCAGU-GGCGAAGGCGA--- d.16.b.L.lactis.GEN.fasta GAAAUG---CGUAGAUAUAUG-GAGGAACACCGGU-GGCGAAAGCGG--- d.16.b.S.pyogenes.GEN.fasta GAAAUG---CGUAGAUAUAUG-GAGGAACACCGGU-GGCGAAAGCGG--- d.16.b.L.acidophilus.fasta GGAAUG---CGUAGAUAUAUG-GAAGAACACCAGU-GGCGAAGGCGG--- d.16.b.M.capricolum.fasta GAAAUG---CGUAGAUAUAUG-GAAGAACACCUGU-GGCGAAAGCGG--- d.16.b.M.mycoides.fasta GAAAUG---CGUAGAUAUAUG-GAAGAACACCUGU-GGCGAAAGCGG--- d.16.b.E.rhusiopathiae.fasta AAAAUG---CGUAGAUAUAUG-GAGGAACACCAGU-GGCGAAGGCGG--- d.16.b.C.innocuum.fasta AAAAUG---CGUAGAUAUAUG-GAGGAACACCAGU-GGCGAAGGCGG--- d.16.b.M.genitalium.fasta GAAAUG---CGUAGAUAUAUG-AAGGAACACCAGU-GGCGAAGGCGA--- d.16.b.M.pneumoniae.GEN.fasta GAAAUG---CGUAGAUAUAUG-AAGGAACACCAGU-GGCGAAGGCGA--- d.16.b.M.pneumoniae.fasta GAAAUG---CGUAGAUAUAUG-AAGGAACACCAGU-GGCGAAGGCGA--- d.16.b.M.gallisepticum.fasta GAAAUG---CGUAGAUAUAUG-GAAGAACACCAGA-GGCGAAGGCGA--- d.16.b.U.urealyticum.fasta AAAAUG---CGUAGAUAUAUG-GAAGAACACCGGU-GGCGAAGGCGC--- d.16.b.U.urealyticum.GEN.fasta AAAAUG---CGUAGAUAUAUG-GAAGAACACCGGU-GGCGAAGGCGC--- d.16.b.M.hyopneumoniae.fasta GGAAUA---CGUAGAUAUUAG-GAAGAACACCAAUAGGCGAAGGCAG--- d.16.b.F.necrophorum.fasta GAAAUU---CGUAGAUAUUUG-UAGGAAUGCCGAU-GGGGAAGCCAG--- d.16.b.F.nucleatum.fasta GAAAUU---CGUAGAUAUUUG-UAGGAAUGCCGAU-GGGGAAGCCAG--- d.16.b.S.moniliformis.fasta GAAAUU---CGUAGAUAUGUG-UAGGAAUGCCGAU-GAUGAAGAUAA--- d.16.b.C.botulinum.F.fasta GAAAUG---CGUAGAG-AUUAGGAAGAACACCAGU-GGCGAAGGCGG--- d.16.b.C.tetani.fasta GAAAUG---CGUAGAGGAUUAGGAAGAACACCAGU-GGCGAAGGCGG--- d.16.b.C.perfringens.fasta GAAAUG---CGUAGAG-AUUAGGAAGAACACCAGU-GGCGAAGGCGA--- d.16.b.C.difficile.fasta GAAAUG---CGUAGAN-AUUAGGAGGAACACCAGU-UGCGAAGGCGG--- d.16.b.E.brachy.fasta GGAAUG---CAUAGAU-AUUAGGAGGAACAUCAGC-GGCGAAGGCGG--- d.16.b.Epulopiscium.sp.fasta GAAAUG---CGUAGAG-AUUUGGAGGAACACCAGU-AGCGAAGGCGA--- d.16.b.H.chlorum.fasta GAAAUG---CGUAGAU-AUCGGGAGGAACACCCGU-GGCGAAGGCGG--- b.16.m.G.max.fasta GAAAUC---CGCAGAUCUACGAAGGAA-CGCCAAA-AGCGAAGGCAG--- b.16.m.O.berteriana.fasta GAAAUC---CGGAGAUCUACGAAGGAA-CGCCAAA-AGCGAAGGCAG--- b.16.m.S.cereale.fasta GAAAUC---CGUAGAUCUACGAAGGAA-CGCCAAA-AGCGAAGGCAG--- b.16.m.T.aestivum.fasta GAAAUC---CGUAGAUCUACGAAGGAA-CGCCAAA-AGCGAAGGCAG--- d.16.m.Z.mays.fasta GAAAUC---CGUAGAUCUACGAAGGAA-CGCCAAA-AGCGAAGGCAG--- b.16.m.M.polymorpha.fasta AAAAUG---CAAAAAUAUACGAAGGAA-CGCCAAA-AGCGAAGGCAG--- b.16.m.N.olivacea.fasta UGAAUU---CGUAGAUAUUUGAAGGAA-GGCCAAA-GGCGAAGGCAG--- d.16.b.G.liquefaciens.fasta GAAAUU---CGUAGAUAUUGGGAAGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.B.japonicum.fasta GAAAUU---CGUAGAUAUUCGCAAGAA-CACCAGU-GGCGAAGGCGG--- d.16.b.R.acidophilus.fasta GAAAUU---CGUAGAUAUUCGCAAGAA-CACCAGU-GGCGAAGGCGG--- d.16.b.A.caulinodans.fasta GAAAUU---CGUAGAUAUUCGGAAGAA-CACCAGU-GGCGAAGGCGG--- d.16.b.B.quintana.fasta AAAAUU---CGUAGAUAUUCGGAGGAA-CACCAGU-GGCGAAGGCGG--- d.16.b.M.loti.fasta GAAAUU---CGUAGAUAUUCGGAGGAA-CACCAGU-GGCGAAGGCGG--- d.16.b.A.tumefaciens.fasta GAAAUU---CGUAGAUAUUCGGAGGAA-CGCCAGU-GGCGAAGGCGG--- d.16.b.B.bacilliformis.fasta AAAAUU---CGUAGAUAUUCGGAGGAA-CACCAGU-GGCGAAGGCGG--- d.16.b.B.henselae.fasta AAAAUU---CGUAGAUAUUCGGAGGAA-CACCAGU-GGCGAAGGCGG--- d.16.b.B.melitensis.fasta GAAAUU---CGUAGAUAUUCGGAGGAA-CACCAGU-GGCGAAGGCGG--- d.16.b.R.orientis.fasta GAAAUU---CGUAGAUAUUAGGAAGAA-CACCAGU-GGCGAAGGCGG--- d.16.b.Methylobacterium.sp.fas GAAAUU---CGUAGAUAUUCGCAAGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.R.bellii.fasta GAAAUU---CUUAGAUAUUAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.R.felis.URRWXCal2.fasta GAAAUU---CUUAGAUAUUAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.R.prowazekii.fasta GAAAUU---CUUAGAUAUUAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.R.prowazekii.GEN.fasta GAAAUU---CUUAGAUAUUAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.R.rickettsii.fasta GAAAUU---CUUAGAUAUUAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.A.calcoaceticus.fasta GAAAUG---CGUAGAGAUCUGGAGGAA-UACCGAU-GGCGAAGGCAG--- d.16.b.P.pacificensis.fasta GAAAUG---CGUAGAGAUCUGAAGGAA-UACCGAU-GGCGAAGGCAG--- d.16.b.C.marismortui.fasta GAAAUG---CGUAGAGAUCGGGAGGAA-UACCAGU-GGCGAAGGCGG--- d.16.b.H.halodenitrificans.fas GAAAUG---CGUAGAUAUAGGAAGGAA-UACCAGU-GGCGAAGGCGG--- d.16.b.P.aeruginosa.fasta GAAAUG---CGUAGAUAUAGGAAGGAA-CACCAGU-GGCGAAGGCGA--- d.16.b.P.aeruginosa.GEN.fasta GAAAUG---CGUAGAUAUAGGAAGGAA-CACCAGU-GGCGAAGGCGA--- d.16.b.Pseudomonas.sp.fasta GAAAUG---CGUAGAUAUAGGAAGGAA-CACCAGU-GGCGAAGGCGA--- d.16.b.P.putida.fasta GAAAUG---CGUAGAUAUAGGAAGGAA-CACCAGU-GGCGAAAGCGA--- d.16.b.C.burnetii.fasta GAAAUG---CGUAGAUAUCGGAAAGAA-CACCAGU-GGCGAAGGCGA--- d.16.b.M.capsulatus.fasta GAAAUG---CGUAGAGAUCUGAAGGAA-CACCAGU-GGCGAAGGCGG--- d.16.b.L.pneumophila.1.fasta GAAAUG---CGUAGAGAUCGGAAGGAA-CACCAGU-GGCGAAGGCGG--- d.16.b.L.pneumophila.2.fasta NNNNNG---CGUAGAGAUCGGAAGGAA-CACCAGU-GGCGAAGGCGG--- d.16.b.A.vinosum.fasta GAAAUG---CGUAGAGAUCUGGAGGAA-CACCAGU-GGCGAAGGCGG--- d.16.b.Beggiatoa.sp.fasta GAAAUG---CGUAGAUAUGUGGAGGAA-CAUCAGU-GGCGAAGGCGA--- d.16.b.A.hydrophila.fasta GAAAUG---CGUAGAGAUCUGGAGGAA-UACCGGU-GGCGAAGGCGG--- d.16.b.S.putrefaciens.fasta GAAAUG---CGUAGAGAUCUGGAGGAA-UACCGGU-GGCGAAGGCGG--- d.16.b.C.freundii.fasta GAAAUG---CGUAGAGAUCUGGAGGAA-UACCNGU-GGCGAAGGCGG--- d.16.b.S.dysenteriae.1.fasta GAAAUG---CGUAGAGAUCUGGAGGAA-UACCGGU-GGCGAAGGCGG--- d.16.b.K.pneumoniae.fasta GAAAUG---CGUCGAGAUCUGGAGGAA-UCCCGGU-GGCGAAGGCGG--- d.16.b.P.shigelloides.fasta GAAAUG---CGUAGAGAUCUGGAGGAA-UACCGGU-GGCGAAGGCGG--- d.16.b.Y.pestis.fasta GAAAUG---CGUAGAGAUCUGGAGGAA-UACCGGU-GGCGAAGGCGG--- d.16.b.Y.pseudotuberculosis.fa GAAAUG---CGUAGAGAUCUGGAGGAA-UACCGGU-GGCGAAGGCGG--- d.16.b.S.dysenteriae.2.fasta GAAAUG---CGUAGAGAUCUGGAGGAA-UACCGGU-GGCGAAGGCGG--- d.16.b.E.coli.0157G.GEN.fasta GAAAUG---CGUAGAGAUCUGGAGGAA-UACCGGU-GGCGAAGGCGG--- d.16.b.E.coli.EDL.GEN.fasta GAAAUG---CGUAGAGAUCUGGAGGAA-UACCGGU-GGCGAAGGCGG--- d.16.b.E.coli.fasta GAAAUG---CGUAGAGAUCUGGAGGAA-UACCGGU-GGCGAAGGCGG--- d.16.b.E.coli.K12.GEN.fasta GAAAUG---CGUAGAGAUCUGGAGGAA-UACCGGU-GGCGAAGGCGG--- h.16.b.E.coli.hlxnum.fasta GAAAUG---CGUAGAGAUCUGGAGGAA-UACCGGU-GGCGAAGGCGG--- m.16.b.E.coli.mhg.fasta GAAAUG---CGUAGAGAUCUGGAGGAA-UACCGGU-GGCGAAGGCGG--- s.16.b.E.coli.schem.fasta GAAAUG---CGUAGAGAUCUGGAGGAA-UACCGGU-GGCGAAGGCGG--- d.16.b.S.typhimurium.fasta GAAAUG---CGUAGAGAUCUGGAGGAA-UACCGGU-GGCGAAGGCGG--- d.16.b.S.marcescens.fasta GAAAUG---CGUAGAGAUCUGGAGGAA-UACCGGU-GGCGAAGGCGG--- d.16.b.E.tarda.fasta GAAAUG---CGUAGAGAUCUGGAGGAA-UACCGGU-GGCGAAGGCGG--- d.16.b.P.vulgaris.fasta GAAAUG---CGUAGAGAUGUGGAGGAA-UACCGGU-GGCGAAGGCGG--- d.16.b.V.cholerae4.fasta GAAAUG---CGUAGAGAUCUGAAGGAA-UACCGGU-GGCGAAGGCGG--- d.16.b.V.cholerae5.fasta GAAAUG---CGUAGAGAUCUGAAGGAA-UACCGGU-GGCGAAGGCGG--- d.16.b.V.cholerae2.fasta GAAAUG---CGUAGAGAUCUGAAGGAA-UACCGGU-GGCGAAGGCGG--- d.16.b.V.cholerae6.fasta GAAAUG---CGUAGAGAUCUGAAGGAA-UACCGGU-GGCGAAGGCGG--- d.16.b.V.cholerae.fasta GAAAUG---CGUAGAGAUCUGAAGGAA-UACCGGU-GGCGAAGGCGG--- d.16.b.V.cholerae.GEN.fasta GAAAUG---CGUAGAGAUCUGAAGGAA-UACCGGU-GGCGAAGGCGG--- d.16.b.V.parahaemolyticus.fast GAAAUG---CGUAGAGAUCUGAAGGAA-UACCGGU-GGCGAAGGCGG--- d.16.b.H.influenzae7.fasta GAAAUG---CGUAGAGAUGUGGAGGAA-UACCGAA-GGCGAAGGCAG--- d.16.b.H.influenzae8.fasta GAAAUG---CGUAGAGAUGUGGAGGAA-UACCGAA-GGCGAAGGCAG--- d.16.b.H.influenzae6.fasta GAAAUG---CGUAGAGAUGUGGAGGAA-UACCGAA-GGCGAAGGCAG--- d.16.b.H.influenz.fasta GAAAUG---CGUAGAGAUGUGGAGGAA-UACCGAA-GGCGAAGGCAG--- d.16.b.H.influenzae.fasta GAAAUG---CGUAGAGAUGUGGAGGAA-UACCGAA-GGCGAAGGCAG--- d.16.b.P.multocida.fasta GAAAUG---CGUAGAGAUGUGNAGGAA-UACCGAA-GGCGAAGGCAG--- d.16.b.P.multocida.GEN.fasta GAAAUG---CGUAGAGAUGUGGAGGAA-UACCGAA-GGCGAAGGCAG--- d.16.b.X.albilineans.fasta GAAAUG---CGUAGAGAUCGGGAGGAA-CAUCUGU-GGCGAAGGCGG--- d.16.b.X.campestris.fasta GAAAUG---CGUAGAGAUCGGGAGGAA-CAUCCGU-GGCGAAGGCGG--- d.16.b.X.fastidiosa.GEN.fasta GAAAUG---CGUAGAGAUCAGGAGGAA-CAUCCGU-GGCGAAGGCGG--- d.16.b.D.nodosus.fasta GAAAUG---CGUAGAUAUUGGAAGGAA-CACCGAU-GGCGAAGGCAG--- d.16.b.F.tularensis.fasta GAAAUG---CGUAGAGAUCAGAAGGAA-CACCAAU-GGCGAAGGCAA--- d.16.b.B.parapertussis.fasta GAAAUG---CGUAGAUAUGCGGAGGAA-CACCGAU-GGCGAAGGCAG--- d.16.b.B.pertussis.fasta GAAAUG---CGUAGAUAUGCGGAGGAA-CACCGAU-GGCGAAGGCAG--- d.16.b.B.bronchiseptica2.fasta GAAAUG---CGUAGAUAUGCGGAGGAA-CACCGAU-GGCGAAGGCAG--- d.16.b.u.proteobacterium.fasta GAAAUG---CGUAGAUAUGCGGAGGAA-CACCGAU-GGCGAAGGCAG--- d.16.b.B.mallei.fasta GAAAUG---CGUAGAGAUGUGGAGGAA-UACCGAU-GGCGAAGGCAG--- d.16.b.Burkholderia.sp.fasta GAAAUG---CGUAGAGAUGUGGAGGAA-UACCGAU-GGCGAAGGCAG--- d.16.b.N.meningitidis.MD58.GEN GAAAUG---CGUAGAGAUGUGGAGGAA-UACCGAU-GGCGAAGGCAG--- d.16.b.N.meningitidis.Z2491.GE GAAAUG---CGUAGAGAUGUGGAGGAA-UACCGAU-GGCGAAGGCAG--- d.16.b.N.gonorrhoeae.fasta GAAAUG---CGUAGAGAUGUGGAGGAA-UACCGAU-GGCGAAGGCAG--- d.16.b.C.testosteroni.fasta GAAAUG---CGUAGAUAUGCGGAGGAA-CACCGAU-GGCGAAGGCAA--- d.16.b.D.desulfuricans.fasta GAAAUC---CGUAGAUAUCUGGAGGAA-CAUCAGU-GGCGAAGGCGG--- d.16.b.M.xanthus.fasta GAAAUU---CGUAGAUAUGGGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.D.thermophilus.fasta GAAAUG---CGUAGAUAUAGGGAGGAA-CACCGGU-UGCGAAGGCGG--- d.16.b.B.burgdorferi.fasta GGAAUC---UGUUGAUAUCAGAAAGAA-UACCGGA-GGCGAAGGCGA--- d.16.b.B.burgdorferi.GEN.fasta GGAAUC---UGUUGAUAUCAGAAAGAA-UACCGGA-GGCGAAGGCGA--- d.16.b.B.hermsii.fasta GGAAUC---UGUUGAUAUCAGGAAGAA-UACCAGA-GGCGAAGGCGA--- d.16.b.S.aurantia.fasta GAAAUC---UGUUGAUAUUAGGAAGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.T.pallidum.A.fasta GGAAUC---UGUAGAUAUUUGGAAGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.L.illini.fasta GAAAUG---CACAGAUAUCGGGAGGAA-CACCAAU-GGCGAAGGCAG--- d.16.b.L.interrogans.fasta GAAAUG---CGUAGAUAUCUGGAGGAA-CACCAGU-GGCGAAGGCGA--- d.16.b.C.trachomatis.GEN.fasta GAAAUG---CGUAGAUAUGUGGAAGAA-CACCAGU-GGCGAAGGCGC--- d.16.b.C.trachomatis.L2.fasta GAAAUG---CGUAGAUAUGUGGAAGAA-CACCAGU-GGCGAAGGCGC--- d.16.b.C.muridarum.fasta GAAAUG---CGUAGAUAUGUGGAAGAA-CACCAGU-GGCGAAGGCGC--- d.16.b.C.pneumoniae.AR39.fasta GAAAUG---CGUAGAUAUGUGGAAGAA-CACCAGU-GGCGAAGGCGC--- d.16.b.C.pneumoniae.fasta GAAAUG---CGUAGAUAUGUGGAAGAA-CACCAGU-GGCGAAGGCGC--- d.16.b.C.pneumoniae.J138.fasta GAAAUG---CGUAGAUAUGUGGAAGAA-CACCAGU-GGCGAAGGCGC--- d.16.b.C.pneumoniae.CWL029.fas GAAAUG---CGUAGAUAUGUGGAAGAA-CACCAGU-GGCGAAGGCGC--- d.16.b.C.psittaci.fasta GAAAUG---CGUAGAUAUGUGGAAGAA-CACCAGU-GGCGAAGGCGC--- d.16.b.D.radiodurans.1.fasta GGAAUG---CGUAGAUACCAGGAGGAA-CACCAAU-GGCGAAGGCAA--- d.16.b.D.radiodurans.GEN.fasta GGAAUG---CGUAGAUACCAGGAGGAA-CACCAAU-GGCGAAGGCAA--- d.16.b.B.fragilis.fasta GAAAUG---CUUAGAUAUCACGAAGAA-CUCCGAU-UGCGAAGGCAG--- d.16.b.P.gingivalis.fasta GAAAUG---CAUAGAUAUCACGAGGAA-CUCCGAU-UGCGAAGGCAG--- d.16.b.C.vibrioforme.fasta GGAAUG---UGUAGAUAUCGGAAAGAA-CACCAGU-GGCGAAGGCAG--- d.16.b.C.jejuni.fasta AAAAUC---CGUAGAUAUCACCAAGAA-UACCCAU-UGCGAAGGCGA--- d.16.b.C.jejuni.GEN.fasta AAAAUC---CGUAGAUAUCACCAAGAA-UACCCAU-UGCGAAGGCGA--- d.16.b.C.sputorum.fasta AAAAUC---CGUAGAUAUCAAGAGGAA-UACUUAU-UGCGAAGGCGA--- d.16.b.H.pylori.26695.GEN.fast AWWAUC---CGUAGAGAUCAAGAGGAA-UACUCAU-UGCGWAGGCGA--- d.16.b.H.pylori.J99.GEN.fasta AAAAUC---CGUAGAGAUCAAGAGGAA-UACUCAU-UGCGAAGGCGA--- d.16.b.H.pylori2.fasta AAAAUC---CGUAGAGAUCAAGAGGAA-UACUCAU-UGCGAAGGCGA--- d.16.b.A.capsulatum.fasta GAAAUN---CGUAGAUAUCGGAAGGAA-CACCUGU-GGCGAAAGCGG--- d.16.b.H.foetida.fasta GAAAUG---CGUAGAGAUGUGGAGGAA-UACCAGU-GGCGAAGGCGG--- d.16.b.A.globiformis.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGAU-GGCGAAGGCAG--- d.16.b.M.luteus.fasta GGAAUG---CGCAGAUAUCAGGAGGAA-CACCGAU-GGCGAAGGCAG--- d.16.b.Frankia.sp.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.bottropensis.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.scabiei.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.neyagawaensis.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.diastatochromogenes.f GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.Streptomyces.sp.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.acidiscabies.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.griseus.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.ornatus.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.subrutilus.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.bikiniensis.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.galbus.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.hygroscopicus.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.lincolnensis.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.coelicolor.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.tendae.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.ambofaciens.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.eurythermus.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.nodosus.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.sampsonii.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.glaucescens.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.pseudogriseolus.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.caelestis.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.bluensis.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.espinosus.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.mashuensis.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.rimosus.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CGCCGGU-GGCGAAGGCGG--- d.16.b.S.limosus.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.odorifer.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.felleus.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.albidoflavus.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.gougerotii.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.rutgersensis.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.intermedius.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.thermodiastaticus.fas GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.thermoviolaceus.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.thermovulgaris.1.fast GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.thermovulgaris.2.fast GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.macrosporus.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.megasporus.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.S.thermolineatus.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.M.tuberculosis.2.fasta GGAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.M.tuberculosis.3.fasta GGAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.M.avium.fasta GGAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.M.leprae.fasta GGAAUG---CGCAGAUAUCAGGAGGAA-CACCAGU-GGCGAAGGCGG--- d.16.b.M.leprae.GEN.fasta GGAAUG---CGCAGAUAUCAGGAGGAA-CACCAGU-GGCGAAGGCGG--- d.16.b.M.tuberculosis.CDC1551. GGAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.M.tuberculosis.GEN.fast GGAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.N.asteroides.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.R.erythropolis.fasta GAAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.C.diphtheriae.fasta GGAAUG---CGCAGAUAUCAGGAGGAA-CACCGAU-GGCGAAGGCAG--- d.16.b.A.israelii.fasta GGAAUG---CGCAGAUAUCAGGAGGAA-CACCGGU-GGCGAAGGCGG--- d.16.b.B.hyodysenteriae.fasta GGAAUG---CGCAGAUAUCGAGAGGAA-CACCUAU-AGCGAAGGCAG--- d.16.b.G.subterranea.fasta GAAAUC---CGUAGAUACAGGUAAGAA-UGCCAGU-GGGGAAGCCGG--- d.16.b.P.miotherma.fasta GAAAUC---CGCAGAUACAGGUAAGAA-GGCCGGU-GAAGAAGUUGG--- d.16.b.B.andersonii.fasta GGAAUG---CAUAGAUAUGGGAAGGAA-CACCAAA-GGCGAAGGCAG--- d.16.b.H.aurantiacus.fasta GAAAUG---CGUAGAUAUCGGGAGGAA-CACCAGU-GGCGCAAGCGG--- d.16.b.Leptospirillium.sp.fast GAAAUG---CGUAGAUAUCAGAAGGAA-GGCCGGU-GGCGAAGGCGG--- d.16.b.A.aeolicus.fasta GAAAUG---CGUAGAUCUCGGGAGGAA-CACCGAA-GGGGAAGCCAG--- d.16.b.A.pyrophilus.fasta GAAAUG---CGUAGAUCUCGGGAGGAA-CACCGAA-GGGGAAGCCAG--- d.16.b.T.maritima.fasta GAAAUC---CGUAGAUAUCGGCAGGAA-CGCCGGU-GGGGAAGCCGG--- d.16.b.T.maritima.GEN.fasta GAAAUC---CGUAGAUAUCGGCAGGAA-CGCCGGU-GGGGAAGCCGG--- n.16.b.T.thermophilus.2.num.fa GAAAUG---CGCAGAUACCGGGAGGAA-CGCCGAU-GGCGAAGGCAG--- s.16.b.T.thermophilus.2.schem. GAAAUG---CGCAGAUACCGGGAGGAA-CGCCGAU-GGCGAAGGCAG--- d.16.b.T.thermophilus.2.fasta GAAAUG---CGCAGAUACCGGGAGGAA-CGCCGAU-GGCGAAGGCAG--- s.16.b.T.thermophilus.1.schem. GAAAUG---CGCAGAUACCGGGAGGAA-CGCCGAU-GGCGAAGGCAG--- n.16.b.T.thermophilus.1.num.fa GAAAUG---CGCAGAUACCGGGAGGAA-CGCCGAU-GGCGAAGGCAG--- d.16.b.T.thermophilus.1.fasta GAAAUG---CGCAGAUACCGGGAGGAA-CGCCGAU-GGCGAAGGCAG--- d.16.b.T.aquaticus.fasta GAAAUG---CGCAGAUACCGGGAGGAA-CGCCGAU-GGCGAAGGCAG--- d.16.b.T.roseum.fasta GAAAUG---CGUAGAGAUCGGGAGGAA-CGCCGGU-GGCGAAGGCGG--- d.16.b.P.marina.fasta GAAAUG---CGUUGAUAUCAUCAGGAA-CACCGGC-GGCGAAGGCGG--- d.16.b.P.staleyi.fasta GAAAUG---CGUUGAUAUCAUCAGGAA-CACCGGA-GGCGAAGGCGG--- d.16.b.P.Schlesner.fasta GAAAUG---UGUUGAUAUCCGAAGGAA-CACCGGU-GGCGAAAGCGA--- d.16.b.G.obscuriglobus.1.fasta GAAAUG---CGUUGAUAUCUACAGGAA-CUCCGGU-GGCGAAAGCGA--- d.16.b.I.pallida.fasta GAUAUG---CGUUGAGAUCGGAAGGAA-NGCCCGU-GGCGAAAGCGG--- d.16.a.P.abyssi.fasta GAAAUC---CUAUAAUCCCGGGGGGAC-CGCCAGU-GGCGAAGGCGC--- d.16.a.P.horikoshii.fasta GAAAUC---CUAUAAUCCCGGGGGGAC-CGCCAGU-GGCGAAGGCGC--- d.16.a.P.furiosus.fasta GAAAUC---CUAUAAUCCCGGGGGGAC-CGCCAGU-GGCGAAGGCGC--- d.16.a.T.celer.fasta GAAAUC---CUAUAAUCCCAGGGGGAC-CGCCAGU-GGCGAAGGCGC--- d.16.a.A.fulgidus.fasta GAAAUC---CUGUAAUCCCGGGAGGAC-CACCUGU-GGCGAAGGCGC--- d.16.a.N.equitans.fasta GAAAUG---CUGUAAUCCCGGGAGGAC-GACCCGU-GGCGAAAGCGG--- d.16.a.A.pernix.K1.fasta GAAAUC---CAUUAAUCCCGGGAGGAC-CACCAGU-GGCGAAGGCGC--- d.16.a.P.occultum.fasta GAAAUC---CGAUAAUCCCGGGAGGAC-CACCAGU-GGCGAAGGCGC--- d.16.a.T.tenax.fasta GAAAUC---CUAUAAUCCCCGGAGGAC-CACCAGU-GGCGAAAGCGG--- d.16.a.S.acidocaldarius.fasta GAAAUC---CUUAGAUACCGGGAGGAC-CACCAGU-GGCGGAAGCGC--- d.16.a.S.solfataricus.fasta GAAAUC---CUUAGAUACCGGGAGGAC-CACCAGU-GGCGGAAGCGC--- d.16.a.S.solfataricus.2.fasta GAAAUC---CUCAGAUCUCGGGAGGAC-CACCAGU-GGCGAAAGCGG--- d.16.a.M.thermautotrophicus.1. GAAAUC---CUGUAAUCCUGGGAGGAC-CACCUGU-GGCGAAGGCGU--- d.16.a.M.thermautotrophicus.2. GAAAUC---CUGUAAUCCUGGGAGGAC-CACCUGU-GGCGAAGGCGU--- d.16.a.M.formicicum.fasta GAAAUC---CUAUAAUCCCGGGAGGAC-CACCUGU-GGCGAAGGCGG--- d.16.a.M.vannielii.fasta GAAAUG---UGUUGAUCCUUGGAGGAC-CACCUAU-GGCGAAGGCAC--- d.16.a.H.marismortui.rrnA.fast GAAAUC---CUGUAAUCCUGGACGGAC-CACCAAU-GGGGAAACCAC--- d.16.a.H.marismortui.rrnB.fast GAAAUC---CUGUAAUCCUGGACGGAC-CACCAAU-GGGGAAACCAC--- d.16.a.Halobacterium.sp.fasta GAAAUC---CUGUAAUCCUGGACGGAC-CGCCGGU-GGCGAAAGCGC--- d.16.a.N.bangense.fasta GAAAUC---CCGUAAUCCUGGACGGAC-CACCGGU-GGCGAAAGCGC--- d.16.a.N.innermongoliae.fasta GAAAUC---CCGUAAUCCUGGACGGAC-CACCGGU-GGCGAAAGCGC--- d.16.a.H.volcanii.fasta GAAAUC---CCGUAAUCCUGGACGGAC-CACCGAU-GGCGAAAGCAC--- d.16.a.M.hungatei.fasta GAAAUC---CUGUAAUCCCGGUGGGAC-CACCUAU-GGCGAAGGCAU--- d.16.a.P.torridus.fasta AAAAUC---CUGUAAUCCUGGAAGGAC-GACCGGU-AGCGAAGGCGU--- d.16.a.T.acidophilum.fasta AAAAUC---CUGUAAUCCUGAAAGGAC-GACCGGU-GGCGAAAGCGU--- a.16.e.G.ardeae.fasta GAAACA--GGA-UGAUCCCUCCG-AGACUCCCCGCGGC-GCAGGCGU--- 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GAAAUU--CUU-AGAUUGCUGGA-AGACAAACUGCUGC-GAAAGCGU--- d.16.e.R.carriebowensis.fasta GAAAUU--CUU-AGAUUGCCGGA-AGACAAACCGCUGC-GAAAGCGU--- d.16.e.B.hamifera.fasta GAAAUU--CUU-GGAUUGCCGGA-AGACAAACAGCUGC-GAAAGCGU--- d.16.e.G.vagum.fasta GAAAUU--CUU-AGAUUGGCGGA-AGACAAACAGCUGC-GAAAGCGU--- d.16.e.C.crispus.fasta GAAAUU--CUU-GGAUUGGCGGA-AGACAAACGGCUGC-GAAAGCGU--- d.16.e.H.plana.fasta GAAAUU--CUU-GGAUUGUUGGA-AGACAAACAGCUGC-GAAAGCGU--- d.16.e.R.leptophylla.fasta GAAAUU--CUU-GGAUUGUUGGA-AGACAAACAGCUGC-GAAAGCGU--- d.16.e.P.pulvinata.fasta GAAAUU--CUU-GGAUUGGCGGA-AGACAAACAGCUGC-GAAAGCGU--- d.16.e.C.rubrum.fasta GAAAUU--CUU-GGAUUGCCGGA-AGACAAACAGCUGC-GAAAGCGU--- d.16.e.Gracilariopsis.sp.fasta GAAAUU--CUU-GGAUUGUCGGA-AGACGAACAGCUGC-GAAAGCGU--- d.16.e.B.moritziana.fasta GAAAUU--CUU-GGAUCGUUGGA-AGACAAACAGCUGCCGAAAGCGU--- d.16.e.H.rubra.fasta GAAAUU--CUU-AGAUUGACGUA-AGACAAACAGCUGC-GAAAGCGU--- d.16.e.D.grisea.fasta GAAAUU--CUU-GGAUUUCUGGA-AGACGAACUGGUGC-GAAAGCGU--- d.16.e.N.fowleri.fasta GAAAUU--CUG-AGACCCUCAUG-UGACCAACUAAGGC-GAAAGCUGUCG d.16.e.N.gruberi.fasta GAAAUU--CUG-AGACCCUCAUG-UGACCAACUAAGGC-GAAAGCUGUCG a.16.e.Hexamita.sp.fasta GAAAUA--GGA-UGAUCCACCAA-GGACUUUCAACAGC-GAAGGCAG--- d.16.e.T.foetus.fasta GGAAUG--UUU-UGACCCAUGAG-AGAGAAACGAAGGC-GAAAGCAU--- d.16.e.A.khaliulini.fasta GACAA---UCGAUGACCUACCAA-GGAGCGACAGAGGC-GAAAGCGA--- d.16.e.E.aedis.fasta GACAA---UCGAUGACCUACCAA-GGAGGACCGGAGGC-GAAAGCGA--- d.16.e.A.connecticus.fasta GAAAA---UCGAUGACCUACCAA-GGAGCACCGGAGGC-GAAAGCGA--- d.16.e.I.barri.fasta GAAAA---UCGAUGACCUACCAA-GGAGCAACAGAGGC-GAAAGCGA--- d.16.e.A.ferocious.fasta GAAAA---UCGAUGACCUGCUGA-GGAGCAACAGAGGC-GAAAGCGG--- d.16.e.Amblyospora.sp.fasta GAAAU---UCGAUGACCUACCAA-GGAGCAACAGAGGC-GAAAGCGA--- d.16.e.C.lunata.fasta GAAAA---UUGAUGACCCAUCGA-GGAGAAACAGAGGC-GAAAGCGG--- d.16.e.P.anophelis.fasta GAAAA---CUGCAGACCUACCGA-GGAGCGACAGAGGC-GUAAGCGG--- d.16.e.Hazardia.sp.fasta GAAAA---CCGAUGACCUGCCGA-GGAGCGACAGAGGC-GAAGGCGG--- d.16.e.H.milleri.fasta GAAAA---CCGAUGACCUGUCGA-GGAGCGACAGAGGC-GCAGGCGG--- d.16.e.P.simulii.fasta GAAAU---UCGAUGACCACUGGA-GGACCGACAGAAGC-GAAAGCGU--- d.16.e.W.palustris.fasta GAAAU---UCAAUGACCACUGGA-GGACCGACAGAAGC-GAAAGCGU--- d.16.e.Nosema.sp.03.fasta GAAAU---GUGAUAACCCUAACU-GGAUGAACAGAAGC-GAAA-CUG--- d.16.e.Nosema.sp.05.fasta GAAAU---GUGAUAACCCUAACU-GGAUGAACAGAAGC-GAAAGCUG--- d.16.e.Endoreticulatus.sp.fast GAAAU---GUGAUAACCCUAACU-GGAUGAACAGAAGC-GAAAGCUG--- d.16.e.Nosema.sp.02.fasta GAAAU---GUGUUAACCCUAACU-GGAUGAACAGAAGC-GAAA-SUG--- d.16.e.N.spodopterae.fasta GAAAU---GUGAUAACCCUAACU-GGAUGAACAGAAGC-GAAAGCUG--- d.16.e.N.trichoplusiae.fasta GAAAU---GUGAUAACCCUAACU-GGAUGAACAGAAGC-GAAAGCUG--- d.16.e.N.bombycis.27.fasta GAAAU---GUGAUAACCCUAACU-GGAUGAACAGAAGC-GAAAGCUG--- d.16.e.N.bombycis.02.fasta GAAAU---GUGAUAACCCUAACU-GGAUGAACAGAAGC-GAAAGCUG--- d.16.e.V.imperfecta.fasta GAAAU---GUGAUAACCCUAACU-GGAUGAACAGAAGC-GAAAGCUG--- d.16.e.N.furnacalis.fasta GAAAU---GUGAUAACCCUAACU-GGAUGAACAGAAGC-GAAAGCUA--- d.16.e.Microsporidium57864.fas GAAAU---GUAACGACCCUGACU-GGACGAACAGAAGC-GAAAGCUG--- d.16.e.Vairimorpha.sp.C21.fast GAAAU---GUGACGACCCUGACU-GGACGAACAGAAGC-GAAAGCUG--- d.16.e.N.oulemae.fasta GAAAU---GUAACGACCCUGACU-GGACGAACAGAAGC-GAAAGCUG--- d.16.e.N.necatrix.fasta GAAAU---GUGACGACCCUGACU-GGACGAACAGAAGC-GAAAGCUG--- d.16.e.V.necatrix.fasta GAAAU---GUGACGACCCUGACU-GGACGAACAGAAGC-GAAAGCUG--- d.16.e.N.apis.fasta GAAAU---GUGACGACCCUGACU-GGACGAACUGAAGC-GAAAGCUG--- d.16.e.O.occidentalis.fasta GAAAU---GUGACGACCCUGACU-GGACGAACAGAAGC-GAAAGCUG--- d.16.e.Microsporidium.sp.DP119 GAAAU---CUCAAGACCCUAACU-CGACAAACAGAGGC-GAAGGCGA--- d.16.e.V.corneae.fasta GAAAU---GCCAAGACCCCUGGU-GGACUGAGCGAGGC-GAAGGCGA--- d.16.e.A.michaelis.fasta AAAGU---CUGAGGAUCCUG-CA-GGAGGAGCAAAGGC-GUAAGCAC--- d.16.e.T.contejeani.fasta GAAAU---CUGUAGAUCUAUUUA-GGACUAACUGAAGC-GAAAGCGA--- d.16.e.E.hellem.fasta GAAAU---ACGAAGACCCUGACU-GGACGAAGAGAAGC-GAAGGCUG--- d.16.e.Encephalitozoon.sp.fast GAAAU---ACGAAGACCCUGACU-GGACGGACAGAAGC-GAAGGCUG--- d.16.e.E.cuniculi.fasta GAAAU---GCGAAGACCCUGACU-GGACGAGCGGAAGC-GAAGGCUG--- d.16.e.O.colligata.fasta GAAAU---GUGAAGACCCUGGCU-GGACGAACGGAGGC-GAAGGCUG--- d.16.e.E.salmonis.fasta GAAAU---CUCAAGACCCAACCU-GGACCAACUGAGGC-GAAAGCGG--- d.16.e.N.salmonis.fasta GAAAUU--CUCAAGACCCAACCU-GGACCAAAUGAGGC-GAAAGCGG--- d.16.e.Enterocytozoonidae.sp.f GAAAU---CUCAAGACCCGCCCU-GGACCAACAGAGGC-GAAAGCAG--- d.16.e.E.bieneusi.fasta GAAAU---CUCAAGACCCAGUUU-GGACUAACGGAGGC-GAAGGCGA--- d.16.e.B.algerae.fasta AAAAU---UUGAUGACCUGGUGA-GGACACACGGAGGC-GAAAGCGA--- d.16.e.T.solenopsae.fasta AAAAU---UUGAUGACCUGGUGA-GGACAUUCCGAGGC-GAAAGCGA--- d.16.e.V.acridophagus.fasta AAAAU---UUGAUGACCUAUUGA-GGACAAUCAGUAGC-GAAAGCGA--- d.16.e.Bacillidium.sp.fasta GAAAA---UUUAAGACCUAUUGA-GGACUAUCAGAAGC-GAAAGCGA--- d.16.e.P.cristatellae.fasta GAAAA---UCGUUGACCUGCUGA-GGACUCUCUGAAGC-GAAAGCGA--- d.16.e.Pleistophora.sp.fasta GAAAU---GCCAAGACCCCUGGU-GGACUGAGCGAGGC-GAAAGCGG--- d.16.e.O.operophterae.fasta GAAAUG--GCCAAGACCCUGCCU-GGACCGACGGUGGC-GAAGGCGG--- d.16.e.F.magnivora.fasta GAAAG---UUGACGACCUACGUA-GGACAAACCGAAGC-GAAAGCUG--- d.16.e.G.atherinae.fasta GAAAU---CUGGUGACUCGCUUA-GGAGCAACAGAGGC-GAAAGCGC--- d.16.e.Ichthyosporidium.sp.fas GAAAU---GUGUUGACCCGUUUAUGGAGCGACAGAGGC-GAAAG-GC--- d.16.e.L.acerinae.fasta GAAAU---CUGGUGACUCGCUUA-GGAGCAACAGAGGC-GAAAGCGC--- d.16.e.H.anguillarum.fasta GAAAU---UUGAUGACUCGCUUA-GGAGGAACAGAGGC-GAAAGCGC--- d.16.e.P.mirandellae.fasta GAAAU---UUAAUGACUCGCUUA-GGAGCAACAGAGGC-GAAAGCGC--- d.16.e.T.hominis.fasta GAAAU---UUGAUGACUCGCUUA-GGAGCAGCAGAGGC-GAAAGCGC--- d.16.e.V.culicis.fasta GAAAU---UUGAUGACUCGCUUA-GGAGCAGCAGAGGC-GAAAGCGC--- d.16.e.P.hippoglossoideos.fast GAAAU---UUGAUGACUCGCUUA-GGAGCAACAGAGGC-GAAAGCGC--- d.16.e.Microgemma.sp.fasta GAAAU---UUGAUGACCUGCUU-AGGAGUAACAGAGGC-GAAAGCGC--- d.16.e.S.lophii.fasta GAAAU---UUGAUGACCUGCUUUAGGAGUAACAGAGGC-GAAAGCGC--- d.16.e.Pleistophora.sp.LS.fast GAAAU---CUGAAGACUCAUGU-AGGAGGAGCAAGGGC-GAAAGCAC--- d.16.e.D.gammarellum.fasta GAAAU---UUGAUGACCCAUUCA-GGAGUGACAAAGGC-GAAGGCAC--- d.16.e.M.prosopium.fasta GAAAU---UUGAUGACUCGCUUA-GGAGAAACGGAGGC-GAAGGCGC--- d.16.e.A.scoticae.fasta GAAAAU--CGG-GGACCCUCUGG-GGACGAGCGGAAGC-GAAGGCGG--- d.16.e.P.whitei.fasta GAAAAU--CGG-GGACCCCCCGG-GGACGGGCGGAAGC-GAAGGCGG--- a.16.c.C.coccineum.fasta UCUGCUGGGACGAUACU-GACACUGAGAGA-C-GAAAGCUAGGGGAGCAA a.16.c.C.ruber.fasta UCUGCUGGGCCAAUACU-GACAUUGAGAGA-C-UAAAGCUAGGGGAGCAA d.16.c.N.tabacum.fasta UCUGCUGGGCCGACACU-GACACUGAGAGA-C-GAAAGCUAGGGGAGCGA d.16.c.S.oleracea.fasta UCUGCUGGGCCGACACU-GACACUGAGAGA-C-GAAAGCUAGGGGAGCGA d.16.c.Z.mays.fasta UCUGCUGGGCCGACACU-GACACUGAGAGA-C-GAAAGCUAGGGGAGCAA d.16.c.M.polymorpha.fasta UCUUCUGGGCCGACACU-GACACUGAGAGA-C-GAAAGCUAGGGGAGCAA d.16.c.R.communis.fasta UCUGCUGGGCCGACACU-GACACUGAGAGA-C-GAAAGCUAGGGGAGCGA d.16.c.C.vulgaris.fasta UCUGCUGGGCCAUAACU-GACACUGAGAGA-C-GAAAGCGAGGGGAGCAA d.16.c.P.wickerhamii.fasta UCUGCUGGGCCAAUACU-GACACUGAGAGA-C-GAAAGCGAGGGGAGCAA d.16.c.P.minor.fasta UCUGCUGGGCCAUUACU-GACACUGAGAGA-C-GAAAGCUAAGGGAGCGA d.16.c.N.olivacea.fasta UCUGCUGGGCCGUGACU-GACACUCAUGAA-C-GAAAGCUAGGGGAGCCA d.16.c.P.parkeae.fasta UCUGCUGGGCCAACACU-GACACUGAGAGA-C-GAAAGCUAAGGGAGCGA d.16.c.C.reinhardtii.fasta UCUGCUGGGCCGAAACU-GACACUGAGAGA-C-GAAAGCUGGGGGAGCGA b.16.m.A.castellanii.fasta CUAUCUAUUUUAAUACU-GACACUGAGGCA-C-AAAAGCAUAGGGAUCAA d.16.c.P.thurberi.fasta UCUAUUAUGUUAAUACU-GACGCUGAGUCAAC-GAAAGCACGGGAG--AA b.16.m.C.crispus.fasta UAAUCUAAAAUAAAACU-GACACUGAGGUA-U-UAAAGUGUGGGUAGCGA d.16.c.T.gondii.fasta CUUACUGGGUCGAUACU-GACACUGAGAUA-C-GAAAGUUAAGGUAGCAA b.16.m.N.crassa.fasta UCUUUUAUGUAAAAACU-GACGUCGAAGGA-C-GAAGGCAAAGGGAACAA b.16.m.P.anserina.fasta UCUUUUAUAUAAAAACU-GACGUUGAAGGA-C-GAAGGCUUAGGUCACAA b.16.m.P.chrysogenum.fasta CCUUCUAUGUAAUAACU-GACGUUGAGAGA-C-GAAGGCUUGGGUAGCAA b.16.m.E.nidulans.fasta CCUUCUAUGUAAAAACU-GACGUUGAGGGA-C-GAAGGCUUGGGUAGCAA b.16.m.S.cerevisiae.fasta U-AAUUAAAUAUUAACU-GACAUUGAGGGA-U-UAAAACUAGAGUAGCGA b.16.m.W.saturnus.m.fasta U-UAUUAUAUGUUAACU-GACAUUGAGGGA-U-GAAGGCUAAAUUAAUGA b.16.m.P.minor.fasta U-UUUUGAUUCUUAUUUUGACACUGUCGUA-U-GAAAGCUUGGGGAUCAA d.16.c.P.falciparum.fasta AAUACUAUAUAAUUACU-GACACUUAAAAA-C-GAAAGCUAAGGUAGCAA d.16.c.B.bovis.fasta UAAACUGGUUUAUUUCU-GACAUUGGAGGA-U-GAAAGCUAAAGUAGCGA b.16.m.T.pyriformis.fasta UUCUCUAAUUAUAAUUU-UAU-CUGAUGUA-U-GAAAGUACGGGUAUCGA d.16.m.S.sinuspaulianus.fasta UUAUCUAUCUACAGAUU-GACGCUGAGAAA-C-GAAAGGGAGGUAAGGAA b.16.m.P.tetraurelia.fasta C-UAACAAUUAAAAAAU-GACGCUAUAUCA-C-GAAAGUAUAGGUAAUGA b.16.m.D.discoideum.fasta AAAUACAAGCAAUA-CU-GACGCUAAAGCA-C-GAAGGUUCAGGGAGCAA d.16.m.P.polycephalum.fasta C-AUCCGAUUCUGAUCU-AACGCUCAGGUA-C-UAAAGUAUGGGGAUCAA b.16.m.P.littoralis.fasta U--CCUUGUUCAGUACU-GACGCUGAGGGG-C-GAAGGCGUAGGUAGCGA b.16.m.P.wickerhamii.fasta CUCUCUAGUAAAACACU-GACAUUGAGGCA-C-GAAAGCGUGGGUAGCGA d.16.c.H.africana.fasta UCUGCUGGGCCAAAAUU-GACACUGAUAAA-C-GAAAGCUAGGGUAGCGA d.16.c.C.fragile.fasta UCUGCUGGGCCAUAACU-GACACUGAGAAA-C-GAAAGCUAGGGGAGCAA d.16.c.C.sertularioides.fasta UCUACUGGGUCUAUACU-GACACUCAUGGA-C-GAAAGCUAAGGGAGCCA d.16.c.C.humicola.fasta UCUACUGGGCCGAGACU-GACACUGAGAGA-C-GAAAGCUACGGGAGCGA d.16.c.P.uvella.fasta UCUACUAGGACGAAACU-GACGCUGAGAGA-C-GAAAGCUAUGGUAGCGA a.16.c.G.nostochinearum.fasta UCUGCUGGGCCGUUACU-GACACUGAGGAA-C-GAAAGCUAGGGGAGCAA a.16.c.G.wittrockiana.fasta UUUGCUGGGCCAUAACU-GACACUGAGGAA-C-GAAAGCUAGGGGAGCAA d.16.c.C.paradoxa.fasta UCUGCUGGGCCGUAACU-GACACUGAGGAA-C-GAAAGCUAGGGUAGCAA d.16.y.C.paradoxa.fasta UCUGCUGGGCCGUUACU-GACACUGAGGAA-C-GAAAGCUAGGGUAGCAA d.16.c.Cryptomonas.sp.fasta UUUACUGGGCCAUAACU-GACACUGAGAGA-C-GACAGCUAGGGGAGCAA d.16.c.P.palmata.fasta UCUGCUAGGCCAUUACU-GACACUCAGAGA-C-GAAAGCUAGGGGAGCAA d.16.c.H.akashiwo.fasta UCUACUGGGCCAUUACU-GACACUGAGAGA-C-GAAAGCUAGGGGAGCAA d.16.c.S.pseudocostatum.fasta UUUACUGGGCUAUUACU-AACACUCAGAGA-C-GAAAGCUAGGGUAGCAA d.16.c.P.littoralis.fasta UUUACUGGGCUAUUUCU-GACACUAAGAGA-C-GAAAGCUAGGGUAGCAA d.16.c.C.caldarium.fasta UCUGCUGGGCCAUUACU-GACACUCAGAGA-C-GAAAGCUAGGGGAGCAA a.16.c.E.huxleyi.fasta UCUACUGGACCAUUACU-GACACUCAGAGG-C-GAAAGCUAGGGGAGCAA d.16.c.E.gracilis.fasta UUUUCUAGGCCAAUACU-GACGCUGAGAAA-C-GAAAGCUGAGGGAGCAA d.16.b.Anabaena.sp.fasta UCUGCUAGGCCGUAACU-GACACUGAGGGA-C-GAAAGCUAGGGGAGCGA d.16.b.Chlorogloeopsis.PCC7518 CCUGCUAGGCUGUGACU-GACACUGAGGGA-C-GAAAGCUAGGGGAGCGA d.16.b.Synechococcus.sp.fasta GCUACUGGGCCAUAACU-GACGCUCAUGGA-C-GAAAGCUAGGGGAGCGA d.16.b.Synechocystis.PCC6803.G GCUACUGGGCUGAAACU-GACACUGAGGGA-C-GAAAGCUAGGGUAGCGA d.16.b.O.agardhii.fasta UCUGCUGGGCUAUAACU-GACACUGAGGGA-C-GAAAGCUAGGGGAGCGA d.16.b.Pleurocapsa.7516.fasta UCAACUGGGCCAUAACU-GACACUCAGGGA-C-GAAAGCUAGGGUAGCGA d.16.b.M.aeruginosa.fasta GCUACUGGGCUGUAUCU-GACACUCAGGGA-C-GAAAGCUAGGGGAGCGA b.16.m.C.reinhardtii.fasta CAACAUCAG-AGUCACU-AAAGCUUCAACG-C-GUAAGUUUGGGUAGCGA d.16.m.C.eugametos.fasta AUUUUGAAA-AUUUAUA-UAAGCUGUAACA-C-GGAAGUCCGAGUAGCAA b.16.m.M.senile.fasta AUUUACCAC-A---AAA-UAGGCUGAAACA-U-GAAAGUGUGGGGAGCAA d.16.b.S.pneumoniae.fasta CUCUCUGGCUNGUAACU-GACGCUGAGGCU-C-GNAAGCGUGGGGAGCAA d.16.b.S.pyogenes.fasta CUNUCUNGUCUGUAACU-GACGCUGAGGCU-N-GAAAGCGUGGGGAGCAA d.16.b.B.anthracis.fasta CUNUCUNGUCUGUAACU-GACACUGAGGCG-C-GAAAGCGNNNNNAGCAA d.16.b.B.cereus.1.fasta CUNUCUGGUCUGUAACU-GACACUGAGGCG-C-GAAAGCGUGGGGAGCAA d.16.b.E.faecalis.fasta CUCUCUGGUCUGUAACU-GACGCUGAGGCU-C-GAAAGCGUGGGGAGCAA d.16.b.E.faecium2.fasta CUCUCUGGUCUGUAACU-GACGCUGAGGCU-C-GAAAGCGUGGGGAGCAA d.16.b.L.monocytogenes.fasta CUCUCUGGUCUGUAACU-GACGCUGAGGCG-C-NNAAGCGUGGGGAGCAA d.16.b.B.subtilis.fasta CUCUCUGGUCUGUAACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.B.subtilis.GEN.fasta CUCUCUGGUCUGUAACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.B.halodurans.fasta CUCUCUGGUCUGUAACU-GACGCUGAGGCG-C-GAAAGCGUGGGGAGCAA d.16.b.S.aureus.fasta CUUUCUGGUCUGUAACU-GACGCUGAUGUG-C-GAAAGCGUGGGGAUCAA d.16.b.S.aureus.GEN.fasta CUUUCUGGUCUGUAACU-GACGCUGAUGUG-C-GAAAGCGUGGGGAUCAA d.16.b.L.lactis.GEN.fasta CUCUCUGGCCUGUAACU-GACACUGAGGCU-C-GAAAGCGUGGGGAGCAA d.16.b.S.pyogenes.GEN.fasta CUCUCUGGUCUGUAACU-GACGCUGAGGCU-C-GAAAGCGUGGGGAGCAA d.16.b.L.acidophilus.fasta CUCUCUGGUCUGCAACU-GACGCUGAGGCU-C-NNAAGCAUGGGUAGCGA d.16.b.M.capricolum.fasta CUUACUGGCUUGUUAUU-GACGCUGAGGCA-C-GAAAGCGUGGGGAGCAA d.16.b.M.mycoides.fasta CUUACUGGCUUGUUAUU-GACGCUGAGGCA-C-GAAAGCNUGGGGAGCAA d.16.b.E.rhusiopathiae.fasta CUAACUGGCCUGUAACU-GACGCUGAGGCU-C-GAAAGCGUGGGGAGCAA d.16.b.C.innocuum.fasta UCGCCUGGUCUGUAACU-GACACUGAGGCA-C-GAAAGCGUGGGGAGCAA d.16.b.M.genitalium.fasta AAACUUAGGCCAUUACU-GACGCUUAGGCU-U-GAAAGUGUGGGGAGCAA d.16.b.M.pneumoniae.GEN.fasta AAACUUAGGCCAUUACU-GACGCUUAGGCU-U-GAAAGUGUGGGGAGCAA d.16.b.M.pneumoniae.fasta AAACUUAGGCCAUUACU-GACGCUUAGGCU-U-GAAAGUGUGGGNAGCAA d.16.b.M.gallisepticum.fasta GGACUUGGGCCAAUACU-GACGCUUAGGCU-U-GAAAGUGUGGGGAGCAA d.16.b.U.urealyticum.fasta CAACUUGGACUAUCACU-GACGCUUAGGCU-C-GAAAGUGUGGGGAGCAA d.16.b.U.urealyticum.GEN.fasta CAACUUGGACUAUCACU-GACGCUUAGGCU-C-GAAAGUGUGGGGAGCAA d.16.b.M.hyopneumoniae.fasta CUAACUGGUCAUAUAUU-GACACUAAGGGA-C-GAAAGCGUGGGGAGCAA d.16.b.F.necrophorum.fasta CCUACUGGACAGAUACU-GACGCUAAAGCG-C-GAAAGCGUGGGUAGCAA d.16.b.F.nucleatum.fasta CUUACUGGACAGAUACU-GACGCUGAAGCG-C-NNNAGCGUGGGUAGCAA d.16.b.S.moniliformis.fasta CUCACUGGACAGAAACU-GACGCUGAAGUG-C-GAAACGUAGGGGAGCAA d.16.b.C.botulinum.F.fasta CUUUCUGGACUGUAACU-GACGCUGAGGCA-C-GAAAGCGUGGGUAGCAA d.16.b.C.tetani.fasta UUUCCUGGACUGUAACU-GACGCAGAGGCA-C-GAAAGCGUGGGUAGCAA d.16.b.C.perfringens.fasta CUCUCUGGACUGUAACU-GACGCUGAGGCU-C-GAAAGCGUGGGGAGCAA d.16.b.C.difficile.fasta CUCUCUGGACUGUAACU-GACGCUGAGGCA-C-GAAAGCGUGGGGAGCAA d.16.b.E.brachy.fasta CUUUCUGGACUGCAACU-GACACUGAGGUA-C-GAAAGCGUGGGGAGCAA d.16.b.Epulopiscium.sp.fasta CUUUCUGGACUGUAACU-GACGCUGAGACA-C-GAAAGCGUGGGGAGCGA d.16.b.H.chlorum.fasta CUAUCUGGACAUUAUCU-GACGCUGAGGCG-C-GAAAGCGUGGGGAGCAA b.16.m.G.max.fasta CUCUCUGGGUCCCUA-CCGACGCUGGAGUG-C-GAAAGCAUGGGGAGCGA b.16.m.O.berteriana.fasta CUCUCUGGGUCCCUA-CCGACGCUGGGGUG-C-GAAAGCAUGGGGAGCGA b.16.m.S.cereale.fasta CUCUCUGGGUCCCUA-CCGACGCUGGGGUG-C-GAAAGCAUGGGGAGCGA b.16.m.T.aestivum.fasta CUCUCUGGGUCCCUA-CCGACGCUGGGGUG-C-GAAAGCAUGGGGAGCGA d.16.m.Z.mays.fasta CUCUCUGGGUCCCUA-CCGACGCUGGGGUG-C-GAAAGCAUGGGGAGCGA b.16.m.M.polymorpha.fasta CUUUCUGGUUCUUUAACUGACGCUAAAGUG-C-GAAAGCAUGGGGAGCAA b.16.m.N.olivacea.fasta CUUUCUGG-UUAUAAUCUGACGCUGAGGUG-C-GAAAGCAUGGGGAGCAA d.16.b.G.liquefaciens.fasta CAACCUGGCUCAUAA-CUGACGCUGAGGCG-C-GAAAGCGUGGGGAGCAA d.16.b.B.japonicum.fasta CUCACUGGCCCGAUA-CUGACGCUGAGGCA-C-GAAAGCGUGGGGAGCAA d.16.b.R.acidophilus.fasta CUCACUGGCUCGAUA-CUGACGCUGAGGUG-C-NNAAGCGUGGGGAGCAA d.16.b.A.caulinodans.fasta CCAACUGGCUCGAUA-CUGACGCUGAGGUG-C-GAAAGCGUGGGGAGCAA d.16.b.B.quintana.fasta CUCACUGGUCCAUUA-CUGACGCUGAGGUG-C-GAAANCGUGGGGAGCAA d.16.b.M.loti.fasta CUCACUGGUCCGGUA-CUGACGCUGAGGUG-C-GAAAGCGUGGGGAGCAA d.16.b.A.tumefaciens.fasta CUUACUGGUCCAUUA-CUGACGCUGAGGUG-C-GAAAGCGUGGGGAGCAA d.16.b.B.bacilliformis.fasta CUCACUGGUCCAUUA-CUGGCGCUGAGGUG-C-GAAAGCGUGGGGAGCAA d.16.b.B.henselae.fasta CUCACUGGUCCAUUA-CUGACGCUGAGGUG-C-GAAAGCGUGGGGAGCAA d.16.b.B.melitensis.fasta CUCACUGGACCAUUA-CUGACGCUGAGGUG-C-GAAAGCGUGGGGAGCAA d.16.b.R.orientis.fasta CUCACUGGUCCGGAA-CUGACGCUGAGGUG-C-GAAAGCGUGGGGAGCAA d.16.b.Methylobacterium.sp.fas CCAACUGGACCAUUA-CUGACGCUGAGGCG-C-GAAAGCGUGGGGAGCAA d.16.b.R.bellii.fasta UCAUCUGGGCUACAA-CUGACGCUGAUGCA-C-GAAAGCGUGGGGAGCAA d.16.b.R.felis.URRWXCal2.fasta UCAUCUGGGCUACAA-CUGACGCUGAUGCA-C-GAAAGCGUGGGGAGCAA d.16.b.R.prowazekii.fasta UCAUCUGGGCUACAA-CUGACGCUGAUGCA-C-GAAAGCGUGGGGAGCAA d.16.b.R.prowazekii.GEN.fasta UCAUCUGGGCUACAA-CUGACGCUGAUGCA-C-GAAAGCGUGGGGAGCAA d.16.b.R.rickettsii.fasta UCAUCUGGGCUACCA-CUGACGCUGAUGCA-C-GAAAGCGUGGGGAGCAA d.16.b.A.calcoaceticus.fasta CCAUCUGGCCUAAUA-CUGACGCUGAGGUA-C-GNAAGCAUGGGGAGCAA d.16.b.P.pacificensis.fasta CUUCCUGGCAUCAUA-CUGACACUGAGGCU-C-GAAAGCGUGGGUAGCAA d.16.b.C.marismortui.fasta CCUUCUGGACUGACA-CUGACGCUGAGGUG-C-GAAAGCGUGGGUAGCAA d.16.b.H.halodenitrificans.fas CCUUCUGGACUGACA-CUGACGCUGAGGUG-C-GAAAGCGUGGGUAGCAA d.16.b.P.aeruginosa.fasta CCACCUGGACUGAUA-CUGACACUGAGGUG-C-GAAAGCGUGGGGAGCAA d.16.b.P.aeruginosa.GEN.fasta CCACCUGGACUGAUA-CUGACACUGAGGUG-C-GAAAGCGUGGGGAGCAA d.16.b.Pseudomonas.sp.fasta CCACCUGGACUGAUA-CUGACACUGAGGUG-C-GAAAGCGUGGGGAGCAA d.16.b.P.putida.fasta CCACCUGGACUGAUA-CUGACACUGAGGUG-C-GAAAGCGUGGGGAGCAA d.16.b.C.burnetii.fasta CUUCCUGGACCAAUA-CUGACACUGAGGCG-C-GAAAGCGUGGGGAGCAA d.16.b.M.capsulatus.fasta CUCCCUGGACCAACA-CUGACGCUGAGGUG-C-GAAAGCGUGGGGAGCAA d.16.b.L.pneumophila.1.fasta CUACCUGGCCUAAUA-CUGACACUGAGGCA-C-GAAAGCGUGGGGAGCAA d.16.b.L.pneumophila.2.fasta CUACCUGGCCUAAUA-CUGACACUGAGGCA-C-GAAAGCGUGGGGAGCAA d.16.b.A.vinosum.fasta CCCCCUGGUUCAACA-CUGACGCUGAGGUG-C-NAAAGCGUGGGGAGCAA d.16.b.Beggiatoa.sp.fasta CUUCCUGGACUAAUA-CUGACACUGAGGUA-C-GAAAGCGUGGGGAGCAA d.16.b.A.hydrophila.fasta CCCCCUGGACAAAGA-CUGACGCUCAGGUG-C-GAAAGCGUGGGGAGCAA d.16.b.S.putrefaciens.fasta CCCCCUGGACAAAGA-CUGACGCUCAUGCA-C-GAAAGCGUGGGGAGCAA d.16.b.C.freundii.fasta CNCCCUGGACAAAGA-CUGACGCUCAGGUG-C-NNAAGCGUGGGGAGCAA d.16.b.S.dysenteriae.1.fasta CCCCCUGGACGAAGA-CUGACGCUCAGGUG-C-GAAAGCGUGGGGAGCAA d.16.b.K.pneumoniae.fasta CCCCCUGGACCAAGA-CUGACGCUCCGGUG-C-GAAAGCGUGGGGAGCCA d.16.b.P.shigelloides.fasta CCCCCUGGACAAAGA-CUGACGCUCAGGUG-C-GAAAGCGUGGGGAGCAA d.16.b.Y.pestis.fasta CCCCCUGGACAAAGA-CUGACGCUCAGGUG-C-GAAAGCGUGGGGAGCAA d.16.b.Y.pseudotuberculosis.fa CCCCCUGGACAAAGA-CUGACGCUCAGGUG-C-GAAAGCGUGGGGAGCAA d.16.b.S.dysenteriae.2.fasta CCCCCUGGACGAAAA-CUGACGCUCAGGUG-C-GAAAGCGUGGGGAGCAA d.16.b.E.coli.0157G.GEN.fasta CCCCYUGGACGAAGA-CUGACGCUCAGGUG-C-GAAAGCGUGGGGAGCAA d.16.b.E.coli.EDL.GEN.fasta CCCCCUGGACGAAGA-CUGACGCUCAGGUG-C-GAAAGCGUGGGGAGCAA d.16.b.E.coli.fasta CCCCCUGGACGAAGA-CUGACGCUCAGGUG-C-GAAAGCGUGGGGAGCAA d.16.b.E.coli.K12.GEN.fasta CCCCCUGGACGAAGA-CUGACGCUCAGGUG-C-GAAAGCGUGGGGAGCAA h.16.b.E.coli.hlxnum.fasta CCCCCUGGACGAAGA-CUGACGCUCAGGUG-C-GAAAGCGUGGGGAGCAA m.16.b.E.coli.mhg.fasta CCCCCUGGACGAAGA-CUGACGCUCAGGUG-C-GAAAGCGUGGGGAGCAA s.16.b.E.coli.schem.fasta CCCCCUGGACGAAGA-CUGACGCUCAGGUG-C-GAAAGCGUGGGGAGCAA d.16.b.S.typhimurium.fasta CCCCCUGGACAAAGA-CUGACGCUCAGGUG-C-GAAAGCGUGGGGAGCAA d.16.b.S.marcescens.fasta CCCCCUGGACGAAGA-CUGACGCUCAGGUG-C-NNAAGCGUGGGGAGCAA d.16.b.E.tarda.fasta CCUCCUGGACGAAGA-CUGACGCUCAGGUG-C-GAAAGCGUGGGGAGCAA d.16.b.P.vulgaris.fasta CCCCCUGGACAAAGA-CUGACGCUCAGGUG-C-GAAAGCGUGGGGAGCAA d.16.b.V.cholerae4.fasta CCCCCUGGACAGAUA-CUGACACUCAGAUG-C-GAAAGCGUGGGGAGCAA d.16.b.V.cholerae5.fasta CCCCCUGGACAGAUA-CUGACACUCAGAUG-C-GAAAGCGUGGGGAGCAA d.16.b.V.cholerae2.fasta CCCCCUGGACAGAUA-CUGACACUCAGAUG-C-GAAAGCGUGGGGAGCAA d.16.b.V.cholerae6.fasta CCCCCUGGACAGAUA-CUGACACUCAGAUG-C-GAAAGCGUGGGGAGCAA d.16.b.V.cholerae.fasta CCCCCUGGACAGAUA-CUGACACUCAGAUG-C-GAAAGCGUGGGGAGCAA d.16.b.V.cholerae.GEN.fasta CCCCCUGGACAGAUA-CUGACACUCAGAUG-C-GAAAGCGUGGGGAGCAA d.16.b.V.parahaemolyticus.fast CCCCCUGGACAGAUA-CUGACACUCAGAUG-C-GAAAGCGUGGGGAGCAA d.16.b.H.influenzae7.fasta CCCCUUGGGAAUGUA-CUGACGCUCAUGUG-C-GAAAGCGUGGGGAGCAA d.16.b.H.influenzae8.fasta CCCCUUGGGAAUGUA-CUGACGCUCAUGUG-C-GAAAGCGUGGGGAGCAA d.16.b.H.influenzae6.fasta CCCCUUGGGAAUGUA-CUGACGCUCAUGUG-C-GAAAGCGUGGGGAGCAA d.16.b.H.influenz.fasta CCCCUUGGGAAUGUA-CUGACGCUCAUGUG-C-GAAAGCGUGGGGAGCAA d.16.b.H.influenzae.fasta CCCCUUGGGAAUGUA-CUGACGCUCAUGUG-C-GAAAGCGUGGGGAGCAA d.16.b.P.multocida.fasta CCCCUUGGGAAUGUA-CUGACGCUCAUGUG-C-NAAAGCGUGGGGAGCAA d.16.b.P.multocida.GEN.fasta CCCCUUGGGAAUGUA-CUGACGCUCAUGUG-C-GAAAGCGUGGGGAGCAA d.16.b.X.albilineans.fasta CCAUCUGGACCAACA-CUGACACUGAGGCA-C-GAAAGCGUGGGGAGCAA d.16.b.X.campestris.fasta CUACCUGGACCAACA-CUGACACUGAGGCA-C-GAAAGCGUGGGGAGCAA d.16.b.X.fastidiosa.GEN.fasta CUACCUGGGCCAACA-CUGACACUGAGGCA-C-GAAAGCGUGGGGAGCAA d.16.b.D.nodosus.fasta CCUUCUGGGGCAAUA-CUGACACUCAUGUG-C-GAAAGCGUGGGUAGCAA d.16.b.F.tularensis.fasta CAUUCUGGACCGAUA-CUGACACUGAGGGA-C-GAAAGCGUGGGGAUCAA d.16.b.B.parapertussis.fasta CCUCCUGGGAUAACA-CUGACGCUCAUGCA-C-GAAAGCGUGGGGAGCAA d.16.b.B.pertussis.fasta CCUCCUGGGAUAACA-CUGACGCUCAUGCA-C-GAAAGUGUGGGGAGCAA d.16.b.B.bronchiseptica2.fasta CCUCCUGGGAUAACA-CUGACGCUCAUGCA-C-GAAAGCGUGGGGAGCAA d.16.b.u.proteobacterium.fasta CCUCCUGGGAUAACA-CUGACGCUCAUGCA-C-GAAAGCGUGGGGAGCAA d.16.b.B.mallei.fasta CCCCCUGGGCCAAUA-CUGACGCUCAUGCA-C-GAAAGCGUGGGGAGCAA d.16.b.Burkholderia.sp.fasta CCCCCUGGGCCAAUA-CUGACGCUCAUGCA-C-GAAAGCGUGGGGAGCAA d.16.b.N.meningitidis.MD58.GEN CCUCCUGGGACAACA-CUGACGUUCAUGCC-C-GAAAGCGUGGGUAGCAA d.16.b.N.meningitidis.Z2491.GE CCUCCUGGGACAACA-CUGACGUUCAUGCC-C-GAAAGCGUGGGUAGCAA d.16.b.N.gonorrhoeae.fasta CCUCCUGGGAUAACA-CUGACGUUCAUGUC-C-GAAAGCGUGGGUAGCAA d.16.b.C.testosteroni.fasta UCCCCUGGGCCUGCA-CUGACGCUCAUGCA-C-GAAAGCGUGGGGAGCAA d.16.b.D.desulfuricans.fasta CCACCUGGACCGGUA-UUGACGCUGAGGUG-C-GAAAGCGUGGGGAGCAA d.16.b.M.xanthus.fasta CCACCUGGACGGUAA-CUGACGCUGAGACG-C-GAAAGCGUGGGGAGCAA d.16.b.D.thermophilus.fasta CUACCUGGCCGGUAA-CUGACGCUGAGGUG-C-GAGAGCGUGGGGACCAA d.16.b.B.burgdorferi.fasta ACUUCUGGGUCAAGACU-GACGCUGAG-UCAC-GAAAGCGUAGGGAGCAA d.16.b.B.burgdorferi.GEN.fasta ACUUCUGGGUCAAGACU-GACGCUGAG-UCAC-GAAAGCGUAGGGAGCAA d.16.b.B.hermsii.fasta ACUUCUAGGUCAAGACU-GACGCUGAG-UCAC-GAAAGCGUAGGGAGCAA d.16.b.S.aurantia.fasta ACUCCUGGCUGAAUACU-GACGCUGAG-GUGC-GAAAGCAUAGGGAGCAA d.16.b.T.pallidum.A.fasta GUUUCUGGCCGAUGAUU-GACGCUGAG-GUGC-GAAGGUGUGGGGAGCGA d.16.b.L.illini.fasta CCUGCUGGACGGAGACU-GACGCUCAU-GCAC-GAAAGCGUGGGGAUCAA d.16.b.L.interrogans.fasta CUUGCUGGCCUAAAACU-GACGCUGAG-GCAC-GAAAGCGUGGGUAGUGA d.16.b.C.trachomatis.GEN.fasta UUUUCUAAUUUAUACCU-GACGCUAAG-GCGC-GAAAGCAAGGGGAGCAA d.16.b.C.trachomatis.L2.fasta UUUUCUAAUUUAUACCU-GACGCUAAG-GCGC-GAAAGCAAGGGGAGCAA d.16.b.C.muridarum.fasta UUUUCUAAUUUAUACCU-GACGCUAAG-GCGC-GAAAGCAAGGGGAGCAA d.16.b.C.pneumoniae.AR39.fasta UUUUCUAAUUUAUACCU-GACGCUAAG-GCGC-GAAAGCAAGGGGAGCAA d.16.b.C.pneumoniae.fasta UUUUCUAAUUUAUACCU-GACGCUAAG-GCGC-GAAAGCAAGGGGAGCAA d.16.b.C.pneumoniae.J138.fasta UUUUCUAAUUUAUACCU-GACGCUAAG-GCGC-GAAAGCAAGGGGAGCAA d.16.b.C.pneumoniae.CWL029.fas UUUUCUAAUUUAUACCU-GACGCUAAG-GCGC-GAAAGCAAGGGGAGCAA d.16.b.C.psittaci.fasta UUUUCUAAUUUACACCU-GACGCUAAG-GCGC-GAAAGCAAGGGGAGCAA d.16.b.D.radiodurans.1.fasta GUUACUGGACAGAAGGU-GACGCUGAG-GCGC-GAAAGUGUGGGGAGCAA d.16.b.D.radiodurans.GEN.fasta GUUACUGGACAGAAGGU-GACGCUGAG-GCGC-GAAAGUGUGGGGAGCAA d.16.b.B.fragilis.fasta CUCACUGGACUGCAACU-GACACUGAU-GCUC-GAAAGUGUGGGUAUCAA d.16.b.P.gingivalis.fasta CUUGCCAUACUGCGACU-GACACUGAA-GCAC-GAAGGCGUGGGUAUCAA d.16.b.C.vibrioforme.fasta UCUUCUGGUCGACAACU-GACGCUCAG-GCAC-GAAAGCGUGGGGAGCGA d.16.b.C.jejuni.fasta UCUGCUGGAACUCAACU-GACGCUAAG-GCGC-GAAAGCGUGGGGAGCAA d.16.b.C.jejuni.GEN.fasta UCUGCUGGAACUCAACU-GACGCUAAG-GCGC-GAAAGCGUGGGGAGCAA d.16.b.C.sputorum.fasta UCUGCUAGAACUUAACU-GACACUAAU-GCGU-GAAAGCGUGGGGAGCAA d.16.b.H.pylori.26695.GEN.fast CCUGCUGGAACAUUACU-GACGCUGAUUGCGC-GAAAGCGUGGGGAGCAA d.16.b.H.pylori.J99.GEN.fasta CCUGCUGGAACAUUACU-GACGCUGAUUGCGC-GAAAGCGUGGGGAGCAA d.16.b.H.pylori2.fasta CCUGCUGGAACAUUACU-GACGCUGAUUGCGC-UAAAGCGUGGGGAGCAA d.16.b.A.capsulatum.fasta CUCACUGGACCACAACU-GACGCUGAUGCA-C-GAAAGCUAGGGGAGCAA d.16.b.H.foetida.fasta CCACCUGGACAGUAACU-GACGCUGAGGCG-C-GAAAGUGUGGGUAGCAA d.16.b.A.globiformis.fasta GUCUCUGGGCAUUAACU-GACGCUGAGGAG-C-GAAAGCAUGGGGAGCGA d.16.b.M.luteus.fasta GUCUCUGGGCUGUAACU-GACGCUGAGGAG-C-NAAAGCAUGGGGAGCGA d.16.b.Frankia.sp.fasta GUCUCUGGGCCGGAACU-GACGCUAAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.bottropensis.fasta AUCUCUGGGCCAUUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.scabiei.fasta AUCUCUGGGCCAUUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.neyagawaensis.fasta AUCUCUGGGCCAUUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.diastatochromogenes.f AUCUCUGGGCCAUUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.Streptomyces.sp.fasta AUCUCUGGGCCAUUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.acidiscabies.fasta AUCUCUGGGCCGAUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.griseus.fasta AUCUCUGGGCCAUUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.ornatus.fasta AUCUCUGGGCCAUUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.subrutilus.fasta AUCUCUGGGCCAUUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.bikiniensis.fasta AUCUCUGGGCCAUUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.galbus.fasta AUCUCUGGGCCAUUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.hygroscopicus.fasta AUCUCUGGGCCAUUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.lincolnensis.fasta AUCUCUGGGCCAUUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.coelicolor.fasta AUCUCUGGGCCGAUACU-GACGCUGAGGAG-C-GAAAGNGUGGGGAGCGA d.16.b.S.tendae.fasta AUCUCUGGGCCGAUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.ambofaciens.fasta AUCUCUGGGCCGAUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.eurythermus.fasta AUCUCUGGGCCGAUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.nodosus.fasta AUCUCUGGGCCGAUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.sampsonii.fasta AUCUCUGGGCCGAUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.glaucescens.fasta AUCUCUGGGCCGAUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.pseudogriseolus.fasta AUCUCUGGGCCGAUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.caelestis.fasta AUCUCUGGGCCGAUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.bluensis.fasta AUCUCUGGGCCGAUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.espinosus.fasta AUCUCUGGGCCGACACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.mashuensis.fasta AUCUCUGGGCCGAUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.rimosus.fasta AUCUCUGGGCCGAUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.limosus.fasta AUCUCUGGGCCGAUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.odorifer.fasta AUCUCUGGGCCGAUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.felleus.fasta AUCUCUGGGCCGAUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.albidoflavus.fasta AUCUCUGGGCCGAUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.gougerotii.fasta AUCUCUGGGCCGAUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.rutgersensis.fasta AUCUCUGGGCCGAUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.intermedius.fasta AUCUCUGGGCCGAUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.thermodiastaticus.fas AUCUCUGGGCCGAUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.thermoviolaceus.fasta AUCUCUGGGCCGAUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.thermovulgaris.1.fast AUCUCUGGGCCGAUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.thermovulgaris.2.fast AUCUCUGGGCCGAUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.macrosporus.fasta AUCUCUGGGCCGAUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.megasporus.fasta AUCUCUGGGCCGAUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.S.thermolineatus.fasta AUCUCUGGGCCGAUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.M.tuberculosis.2.fasta GUCUCUGGGCAGUAACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.M.tuberculosis.3.fasta GUCUCUGGGCAGUAACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.M.avium.fasta GUCUCUGGGCAGUAACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.M.leprae.fasta GUCUCUGGGCAGUAACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCAA d.16.b.M.leprae.GEN.fasta GUCUCUGGGCAGUAACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCAA d.16.b.M.tuberculosis.CDC1551. GUCUCUGGGCAGUAACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.M.tuberculosis.GEN.fast GUCUCUGGGCAGUAACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.N.asteroides.fasta GUCUCUGGGAAGUAACU-GACGCUGAGAAG-C-GAAAGCGUGGGUAGCGA d.16.b.R.erythropolis.fasta GUCUCUGGGCAGUAACU-GACGCUGAGGAA-C-GAAAGCGUGGGUAGCGA d.16.b.C.diphtheriae.fasta GUCUCUGGGCAGUAACU-GACGCUGAGGAG-C-GAAAGCAUGGGGAGCGA d.16.b.A.israelii.fasta GUCUCUGGGCCGUUACU-GACGCUGAGGAG-C-GAAAGCGUGGGGAGCGA d.16.b.B.hyodysenteriae.fasta NCAUCUGGGCAUUUAUC-GACGCUGAAUCA-C-GAAAGCUAGGGGAGCAA d.16.b.G.subterranea.fasta UCUACUGGGGUGACCCU-GACGCUGAGGCC-C-GAAAGCUAGGGUAGCAA d.16.b.P.miotherma.fasta UCUACUGGGCUACAGCU-GACGCUGAGGUC-C-GAAAGCCAGGGGAGCGA d.16.b.B.andersonii.fasta CUACCUAUGCUAAGAUU-GACGCUGAGGCG-C-GAAAGUGUGGGGAUCAA d.16.b.H.aurantiacus.fasta CGUUCUGGGCGAGACCU-GACACUGAGCCA-C-GACGGCGUGGGGAGCAA d.16.b.Leptospirillium.sp.fast CUUCCUGGAACAGACCU-GACACUGAGAGA-C-GAAAGCGUGGGGAGCAA d.16.b.A.aeolicus.fasta CCUGCUGGGGCUGUCCU-GACGGUCAGGGA-C-GAAAGCCGGGGGAGCAA d.16.b.A.pyrophilus.fasta CCUGCUGGGGCUGUCCU-GACGGUCAGGGA-C-GAAAGCCGGGGGAGCGA d.16.b.T.maritima.fasta UCUCCUGGGCCGACCCC-GACGCUGAGGCC-C-GAAAGCCAGGGGAGCAA d.16.b.T.maritima.GEN.fasta UCUCCUGGGCCGACCCC-GACGCUGAGGCC-C-GAAAGCCAGGGGAGCAA n.16.b.T.thermophilus.2.num.fa CCACCUGGUCCACCCGU-GACGCUGAGGCG-C-GAAAGCGUGGGGAGCAA s.16.b.T.thermophilus.2.schem. CCACCUGGUCCACCCGU-GACGCUGAGGCG-C-GAAAGCGUGGGGAGCAA d.16.b.T.thermophilus.2.fasta CCACCUGGUCCACCCGU-GACGCUGAGGCG-C-GAAAGCGUGGGGAGCAA s.16.b.T.thermophilus.1.schem. CCACCUGGUCCACCCGU-GACGCUGAGGCG-C-GAAAGCGUGGGGAGCAA n.16.b.T.thermophilus.1.num.fa CCACCUGGUCCACCCGU-GACGCUGAGGCG-C-GAAAGCGUGGGGAGCAA d.16.b.T.thermophilus.1.fasta CCACCUGGUCCACCCGU-GACGCUGAGGCG-C-GAAAGCGUGGGGAGCAA d.16.b.T.aquaticus.fasta CCACCUGGUCCACUCGU-GACGCUGAGGCG-C-GAAAGCGUGGGGAGCAA d.16.b.T.roseum.fasta CCCGCUGGCCCGUACCU-GACGCUGAGGCG-C-GAAGGCGUGGGGAGCGA d.16.b.P.marina.fasta CUCACUGGGUCUCUACU-GACGCUGAGGCA-C-GAAAGCUAGGGGAGCGA d.16.b.P.staleyi.fasta CUUACUGGGUCCUUUCU-GACGCUGAGGAA-C-GAAAGCUAGGGGAGCAA d.16.b.P.Schlesner.fasta CUGACUGGGUCUCUUCU-GACGCUGAGGCA-C-GAAAGCUAGGGUAGCGA d.16.b.G.obscuriglobus.1.fasta CGUGCUGGACCUCUUCU-GACGCUGAGGCG-C-GAAAGCUAGGGGAGCAA d.16.b.I.pallida.fasta AGUCCUGGACGCUUACU-GACGCUGAGGCG-C-GAAAGCCAGGGGAGCAA d.16.a.P.abyssi.fasta CCGGCUGGAACGGGUCC-GACGGUGAGGGC-C-GAAGGCCAGGGGAGCGA d.16.a.P.horikoshii.fasta CCGGCUGGAACGGGUCC-GACGGUGAGGGC-C-GAAGGCCAGGGGAGCGA d.16.a.P.furiosus.fasta CCGGCUGGAACGGGUCC-GACGGUGAGCGC-G-GAAGGCCAGGGGAGCGA d.16.a.T.celer.fasta CCGGCUGGAACGGGUCC-GACGGUGAGGGA-C-GAAGGCCAGGGGAGCGA d.16.a.A.fulgidus.fasta CCGGCUGGAACGGGUCC-GACGGUGAGGGA-C-GAAGGCCAGGGGAGCGA d.16.a.N.equitans.fasta UCGGCCAGAACGGGUCC-GACGGUGAGGGC-C-GAAGGCCGGGGGCUAGA d.16.a.A.pernix.K1.fasta UCGGCUGGAACGCGCCC-GACGGUGAGGGG-C-GAAAGCCGGGGGAGCGA d.16.a.P.occultum.fasta UCGGCUGGAACGCGCCC-GACGGUGAGGGG-C-GAAAGCCGGGGGAGCAA d.16.a.T.tenax.fasta GCGGCCAGAACGCGCCC-GACGGUGAGGGG-C-GAAAGCCGGGGGAGCAA d.16.a.S.acidocaldarius.fasta CCCGCUAGAACGCGCCC-GACGGUGAGAGG-C-GAAAGCCGGGGCAGCAA d.16.a.S.solfataricus.fasta CCCGCUAGAACGCGCCC-GACGGUGAGAGG-C-GAAAGCCGGGGCAGCAA d.16.a.S.solfataricus.2.fasta CUGGCUAGAACGCGCCC-GACGGUGAGGGG-C-GAAAGCCGGGGCAGCAA d.16.a.M.thermautotrophicus.1. CCAGCUGGAACGAACCU-GACGGUGAGGGA-C-GAAAGCCAGGGGCGCGA d.16.a.M.thermautotrophicus.2. CCAGCUGGAACGAACCU-GACGGUGAGGGA-C-GAAAGCCAGGGGCGCGA d.16.a.M.formicicum.fasta CUAACUGGAACGGGCCU-GACGGUGAGUAA-C-GAAAGCCAGGGGCGCGA d.16.a.M.vannielii.fasta UUGUCUGGAACGGGUCC-GACGGUGAGGGA-C-GAAAGCCAGGGGCGCGA d.16.a.H.marismortui.rrnA.fast CUCAGGAAGACGGACCC-GACGGUGAGGGA-C-GAAAGCUAGGGUCUCGA d.16.a.H.marismortui.rrnB.fast GUUGAGAGACCGGACCC-GACAGUGAGGGA-C-GAAAGCCAGGGUCUCGA d.16.a.Halobacterium.sp.fasta CUCAGGAGAACGGAUCC-GACAGUGAGGGA-C-GAAAGCUAGGGUCUCGA d.16.a.N.bangense.fasta CUCUGGAAGACGGAUCC-GACGGUGAGGGA-C-GAAAGCUCGGGUCACGA d.16.a.N.innermongoliae.fasta CUCUGGAAGACGGAUCC-GACGGUGAGGGA-C-GAAAGCUCGGGUCACGA d.16.a.H.volcanii.fasta CUCGAGAAGACGGAUCC-GACGGUGAGGGA-C-GAAAGCUAGGGUCUCGA d.16.a.M.hungatei.fasta CUCACCAGAACGGGUCC-GACAGUGAGGGA-C-GAAAGCUGGGGGAGCAA d.16.a.P.torridus.fasta UCAACUAGAACGGAUCC-GACGGUGAGGAA-C-GAAGGCUAGGGGAGCAA d.16.a.T.acidophilum.fasta UCAACUAGAACGGAUCC-GACGGUGAGGGA-C-GAAGGCUAGGGGAGCAA a.16.e.G.ardeae.fasta CUGCCAGGGCC-ACCUCUGUCGAUCCA-GGGC-GAAGGCCGGGGGCGAGA d.16.e.G.intestinalis.fasta CUGCCAAGACC-GCCUCUGUCAAUCAA-GGGC-GAAGGCCGGGGGCUAGA a.16.e.G.muris.fasta UUGCCAAGACC-AUAUCAGUCGAACCA-GGAC-GAAGCCCGGGGGCGAGA d.16.e.A.bracteata.fasta UCAUCCAGACU-GUGUCCUAUGAUCAA-GGGC-GGAAGCCGUGGUAGCGA d.16.e.Glomus.sp.W3349.fasta UGC-CAAGGAU-GUUUUCAUUAAUCAAG-AAC-GAAAGUUAGGGGAUCGA d.16.e.S.cerradensis.fasta UGC-CAAGGAU-GUUUUCAUUAAUCAAG-AAC-GAAAGUUAGGGGAUCGA a.16.e.G.intraradices.fasta UGC-CAAGGAU-GUUUUCAUUAAUCAAG-AAC-GAAAGUUAGGGGAUCGA d.16.e.S.culisetae.fasta UGC-CAAGGAU-GUUUUCAUUAAUCAAG-AAC-GAAAGUUAGGGGAUCGA a.16.e.P.balamuthi.fasta CCA-CAAGGAU-GUUUUCAUUAAUCAAG-AAC-GAAAGUUGGGGGAUCGA d.16.e.A.flavus.fasta CGC-CAAGGAU-GUUUUCAUUAAUCAGGGAAC-GAAAGUUAGGGGAUCGA d.16.e.T.caries.fasta UGC-CAAGGAU-GUUUUCAUUAAUCAAG-AAC-GAAGGUUAGGGGAUCGA d.16.e.M.circinelloides.fasta UGAUCCAGGAC-GUUUUCAUUGAUCAAG-GUC-UAAAGUUAAGGGAUCGA d.16.e.M.racemosus.fasta UGAUCCAGGAC-GUUUUCAUUGAUCAAG-GUC-UAAAGUUAAGGGAUCGA d.16.e.R.oryzae.fasta UGACCCGGGAC-GUUUUCAUUGAUCAAG-GUC-UAAAGUUAAGGGAUCGA a.16.e.M.edulis.fasta UUGCCAAGCAU-GUUUUCAUUAGUCAA-GAAC-GAAAGUCAGAGGUUCGA a.16.e.P.magellanicus.fasta UUGCCAAGAAU-GUUUUCAUUAAUCAA-GAUC-GAAAGUCAGAGGUUCGA b.16.e.E.granulosus.fasta UCGUCAAGCAU-GUUUUCAUUGGCCAU-GAGG-GAAAGUCAGAGGCUCGA d.16.e.D.melanogaster.fasta UUGCCAAAGAU-GUUUUCAUUAAUCAA-GAAC-GAAAGUUAGAGGUUCGA b.16.e.C.koreana.fasta UUGCCAAGAAU-GUUUUCAUUAAUCAA-GAAC-GAAAGUUAGAGGUUCGA b.16.e.A.australis.fasta UUGCCAAGAAU-GUUUUCAUUAAUCAA-GAAC-GAAAGUUAGAGGUUCGA b.16.e.O.utahensis.fasta UUGCCAAGUAU-GUUCCCGUUAAUCAA-GAAC-GAAAGUUAGAGGUUCGA b.16.e.A.salina.fasta UUGCCAAGAAU-GUUUUCAUUAAUCAA-GAAC-GAAAGUUAGAGGUUCGA d.16.e.M.musculus.fasta UUGCCAAGAAU-GUUUUCAUUAAUCAA-GAAC-GAAAGUCGGAGGUUCGA d.16.e.R.norvegicus.fasta UUGCCAAGAAU-GUUUUCAUUAAUCAA-GAAC-GAAAGUCGGAGGUUCGA d.16.e.H.sapiens.fasta UUGCCAAGAAU-GUUUUCAUUAAUCAA-GAAC-GAAAGUCGGAGGUUCGA d.16.e.O.cuniculus.fasta UUGCCAAGAAU-GUUUUCAUUAAUCAA-GAAC-GAAAGUCGGAGGUUCGA d.16.e.X.borealis.fasta UUGCCAAGAAU-GUUUUCAUUAAUCAA-GAAC-GAAAGUCGGAGGUUCGA d.16.e.X.laevis.fasta UUGCCAAGAAU-GUUUUCAUUAAUCAA-GAAC-GAAAGUCGGAGGUUCGA d.16.e.A.castellanii.fasta CUGCCAAGGAU-GUUUUCAUUAAUCAA-GAAC-GAAAGUUAGGGGAUCGA d.16.e.B.mandrillaris.fasta UUGCCAAGGAU-GUUUUCAUUAAUCAA-GAAC-GAAAGUUAGGGGAUCGA d.16.e.P.falciparum.A.fasta UUGUCUAAAAU-ACUUCCAUUAAUCAA-GAAC-GAAAGUUAAGGGAGUGA d.16.e.P.falciparum.S.fasta UUGCCUAAUCU-AUUUCCAUUAAUCAA-GAAC-GAAAGUUAAGGGAGUGA d.16.e.P.vivax.A.fasta UUGCCUAAAAU-ACUUCCAUUAAUCAA-GAAC-GAAAGUUAAGGGAGUGA d.16.e.P.vivax.O.fasta UUGCCUAAAAU-ACUUCCAUUAAUCAA-GAAC-GAAAGUUAAGGGAGUGA d.16.e.P.vivax.S.fasta UUGUCUAAAAU-ACUUCCAUUAAUCAA-GAAC-GAAAGUUAAGGGAGUGA d.16.e.E.histolytica.fasta UUCACUCAACU-GUGUCCAUUAAUCAA-GAAC-GAAAGUUAGGGGAUCGA d.16.e.I.hoferi.fasta UUGCCAAGGAU-GUUUUCGUUAAUCAA-GAAC-GAAAGUUAGGGGAUCGA d.16.e.Dermocystidium.sp.fasta UUGCCAAGGAU-GUUUUCAUUAAUCAA-GAAC-GAAAGUUAGGGGAUCGA d.16.e.S.destruens.fasta UUGCCAAGGAU-NUUUUCAUUAAUCAA-GAAC-GAAAGUUAGGGGAUCGA d.16.e.A.unguiculata.fasta UUGCCAAGGAU-GUUUUCAUUAAUCAA-GAAC-GAAAGUUAGGGGAUCGA d.16.e.D.grandis.fasta UUGCCAAGGAU-GUUUUCRUUAAUCAA-GAAC-GAAAGUUAGGGGAUCGA d.16.e.A.macrogynus.fasta UUGCCAAGGAU-GUUUUCAUUAAUCAA-GAAC-GAAAGUUAAGGGAUCGA d.16.e.B.emersonii.fasta UUGCCAAGGAU-GUUUUCAUUAAUCAA-GAAC-GAAAGUUAAGGGAUCGA d.16.e.C.albicans.fasta UUACCAAGGAC-GUUUUCAUUAAUCAA-GAAC-GAAAGUUAGGGGAUCGA d.16.e.S.cerevisiae.fasta UUGCCAAGGAC-GUUUUCAUUAAUCAA-GAAC-GAAAGUUAGGGGAUCGA d.16.e.N.crassa.fasta UUGCCAAGGAU-GUUUUCAUUAAUCAG-GAAC-GAAAGUUAGGGGAUCGA d.16.e.P.anserina.fasta UUGCCAAGGAU-GUUUUCAUUAAUCAG-GAAC-GAAAGUUAGGGGAUCGA d.16.e.C.immitis.fasta UCGCCAAGGAU-GUUUUCAUUAAUCAGUGAAC-GAAAGUUAGGGGAUCGA d.16.e.L.major.fasta UCUUCAAGGAU-ACCUUCCUCAAUCAA-GAAC-CAAAGUGUGGAGAUCGA d.16.e.T.cruzi.fasta UCUUCAAGGAU-ACCUUCCUCAAUCAA-GAAC-CAAAGUGUGGGGAUCGA d.16.e.T.brucei.fasta UCUUCAAGGAU-ACCUUCCUCAAUCAA-GAAC-CAAAGUGUGGGGAUCAA d.16.e.P.carinii.fasta UUGCCAAGGAU-GUUUUCAUUAAUCAA-GAAC-GAAAGUUAGGGGAUCGA d.16.e.C.neoformans.fasta UUGCCAAGGAC-GUUUUCAUUGAUCAA-GAAC-GAAGGUUAGGGGAUCAA d.16.e.Fungus.sp.QPX.fasta 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AGACGAUC-AGAUA--CCGUCGUAGUCCUA-ACCAUAAACUAUGCCGACU d.16.e.Babesia.sp.OKD.fasta AGACGAUC-AGAUA--CCGUCGUAGUCCUA-ACCAUAAACCAUGCCGACU d.16.e.B.microti.1.fasta AGACGAUC-AGAUA--CCGUCGUAGUCCUA-ACCAUAAACUAUGCCGACU d.16.e.B.microti.2.fasta AGACGAUC-AGAUA--CCGUCGUAGUCCUA-ACCAUAAACUAUGCCGACU d.16.e.B.microti.3.fasta AGACGAUC-AGAUA--CCGUCGUAGUCCUA-ACCAUAAACUAUGCCGACU d.16.e.B.microti.4.fasta AGACGAUC-AGAUA--CCGUCGUAGUCCUA-ACCAUAAACUAUGCCGACU d.16.e.B.microti.5.fasta AGACGAUC-AGAUA--CCGUCGUAGUCCUA-ACCAUAAACUAUGCCGACU d.16.e.B.rodhaini.fasta AGACGAUC-AGAUA--CCGUCGUAGUCCUA-ACCAUAAACUAUGCCGACU d.16.e.B.gibsoni.fasta AGACGAUC-AGAUA--CCGUCGUAGUCCUA-ACUAUAAACUAUGCCGACU d.16.e.B.bovis.fasta AGACGAUC-AGAUA--CCGUCGUAGUCCUA-ACCUUAAACUAUGCCGACU d.16.e.J.libera.fasta AGACGAUC-AGACA--CCGCCCUAGUCCUA-ACCAUAAACGAUGCCGACU d.16.e.R.americana.fasta AGACGAUC-AGACA--CCGUCCUAGUCCUA-ACCGUAAACGAUGCCGACU d.16.e.B.ostreae.fasta AGACGAUC-AGAUA--CCGUCGUAGUCCCA-ACCAUAAACGAUGUCAACU d.16.e.A.dasyae.fasta AGACGAUC-AGAUA--CCGUCGUAGUCUUU-ACUAUAAACGAUGAGAACU d.16.e.A.hermannii.fasta AGACGAUC-AGAUA--CCGUCGUAGUCUUU-ACUAUAAACGAUGAGAACU d.16.e.N.helminthoides.fasta AGACGAUC-AGAUA--CCGUCGUAGUCUUU-ACUAUAAACGAUGAGAACU d.16.e.B.gelatinosum.fasta AGACGAUC-AGAUA--CCGUCGUAGUCUUU-ACUAUAAACGAUGAGAACU d.16.e.N.tortuosa.fasta AGACGAUC-AGAUA--CCGUCGUAGUCUUU-ACUAUAAACGAUGAGAACU d.16.e.T.hispida.fasta AGACGAUC-AGAUA--CCGUCGUAGUCUUU-ACUAUAAACGAUGAGAACU d.16.e.T.violacea.4.fasta AGACGAUC-AGAUA--CCGUCGUAGUCUUU-ACUAUAAACGAUGAGAACU d.16.e.T.violacea.1.fasta AGACGAUC-AGAUA--CCGUCGUAGUCUUU-ACUAUAAACGAUGAGAACU d.16.e.T.violacea.2.fasta AGACGAUC-AGAUA--CCGUCGUAGUCUUU-ACUAUAAACGAUGAGAACU d.16.e.N.shawii.fasta AGACGAUC-AGAUA--CCGUCGUAGUCUUU-ACUAUAAACGAUGAGAACU d.16.e.B.investiens.fasta AGACGAUC-AGAUA--CCGUCGUAGUCUUU-ACUAUAAACGAUGAGAACU d.16.e.B.macrosporum.fasta AGACGAUC-AGAUA--CCGUCGUAGUCUUU-ACUAUAAACGAUGAGAACU d.16.e.A.plicata.fasta AGACGAUC-AGAUA--CCGUCGUAGUCUUU-ACUAUAAACGAUGAGAACU d.16.e.C.officinalis.fasta AGACGAUC-AGAUA--CCGUCGUAGUCUUU-ACUAUAAACGAUGAGGACU d.16.e.R.carriebowensis.fasta AGACGAUC-AGAUA--CCGUCGUAGUCUUU-ACUAUAAACGAUGAGGACU d.16.e.B.hamifera.fasta AGACGAUC-AGAUA--CCGUCGUAGUCUUU-ACUAUAAACGAUGAGGACU d.16.e.G.vagum.fasta AGACGAUC-AGAUA--CCGUCGUAGUCUUU-ACUAUAAACGAUGAGGACU d.16.e.C.crispus.fasta AGACGAUC-AGAUA--CCGUCGUAGUCUUU-ACUAUAAACGAUGAGGACU d.16.e.H.plana.fasta AGACGAUC-AGAUA--CCGUCGUAGUCUUU-ACUAUAAACGAUGAGGACU d.16.e.R.leptophylla.fasta AGACGAUC-AGAUA--CCGUCGUAGUCUUU-ACUAUAAACGAUGAGGACU d.16.e.P.pulvinata.fasta AGACGAUC-AGAUA--CCGUCGUAGUCUUU-ACUAUAAACGAUGAGGACU d.16.e.C.rubrum.fasta AGACGAUC-AGAUA--CCGUCGUAGUCUUU-ACCAUAAACUAUGAGGACU d.16.e.Gracilariopsis.sp.fasta AGACGAUC-AGAUA--CCGUCGUAGUCUUU-ACUAUAAACGAUGAGGACU d.16.e.B.moritziana.fasta AGACGAUC-AGAUA--CCGUCGUAGUCUUU-ACUGUAAACUAUGAGGCCU d.16.e.H.rubra.fasta AGACGAUC-AGAUA--CCGUCGUAGUCUUU-ACUAUAAACGAUAAGAACU d.16.e.D.grisea.fasta AGACGAUU-AGAGA--CCGUUGUAGUCCUA-ACCAUAAACUAUGCCGACC d.16.e.N.fowleri.fasta AGACGAUU-AGAUA--CCGUCGUAGUCCCA-ACUAUAAACGAUACCAACC d.16.e.N.gruberi.fasta AGACGAUU-AGAUA--CCGUCGUAGUCCCA-ACUAUAAACGAUACCAACC a.16.e.Hexamita.sp.fasta CGAUGAUU-AGAAA--CCGUUUUAUUUCAC-GCCUUAAACGAUACCAUCU d.16.e.T.foetus.fasta ACCGGAUC-AGAGA--CCCGGGUAGUUCCU-ACCUUAAACGAUGCCGACA d.16.e.A.khaliulini.fasta AGAGGAUU-AGAGA--CCCACGUAGUUCCUUGCAGUCAACGAUGCCAACG d.16.e.E.aedis.fasta AGAGGAUU-AGAGA--CCCACGUAGUUCCUUGCAGUCAACGAUGCCAACG d.16.e.A.connecticus.fasta AGAGGAUU-AGAGA--CCCACGUAGUUCCUUGCAGUCAACGAUGCCAACG d.16.e.I.barri.fasta AGAGGAUU-AGAGA--CCCACGUAGUUCCUUGCAGUCAACGAUGCCAACG d.16.e.A.ferocious.fasta AGGCGAUU-AGAGA--CCGUCGUAGUUCCUAGCAGUAAACGAUGCCAACA d.16.e.Amblyospora.sp.fasta AGAGGAUU-AGAGA--CCCACGUAGUUCCUUGCAGUAAACGAUGCCUACA d.16.e.C.lunata.fasta AGGCGAUU-AGACA--CCGUCGUAGUUCCUUGCAGUAAACGAUGCCCACA d.16.e.P.anophelis.fasta AGACGAUU-AGAGA--CCGUCGUAGUUCCU-GCAGUAAACGAUGCCGACA d.16.e.Hazardia.sp.fasta AGGCGAUU-AGAGA--CCGUCGUAGUUCCU-GCAGUAAACGAUGCCGACG d.16.e.H.milleri.fasta AGGCGAUU-AGAGA--CCGUCGUAGUUCCU-GCAGUAAACGAUGCCGACG d.16.e.P.simulii.fasta AGGCGAUU-AGAAA--CCGUCGUAGUUCCG-GCCGUAAACGAUGCCGAC- d.16.e.W.palustris.fasta AGGCGAUU-AGAAA--CCGUCGUAGUUCCG-GCCGUAAACGAUGCCGAC- d.16.e.Nosema.sp.03.fasta AGAUGAUU-AGAUA--CCAUUGUAGUUCUA-GCAGUAAACUAUGUUGAAU d.16.e.Nosema.sp.05.fasta AGAUGAUU-AGAUA--CCAUUGUAGUUCUA-GCAGUAAACUAUGUUGAAU d.16.e.Endoreticulatus.sp.fast AGAUGAUU-AGAUA--CCAUUGUAGUUCUA-GCAGUAAACUAUGUUGAAU d.16.e.Nosema.sp.02.fasta AGGUGAUU-AGAUA--CCAUUGUAGUUCUA-GCAGUAAACUAUGUUGAAU d.16.e.N.spodopterae.fasta AGAUGAUU-AGAUA--CCAUUGUAGUUCUA-GCAGUAAACUAUGUUGAAU d.16.e.N.trichoplusiae.fasta AGAUGAUU-AGAUA--CCAUUGUAGUUCUA-GCAGUAAACUAUGUUGAAU d.16.e.N.bombycis.27.fasta AGAUGAUU-AGAUA--CCAUUGUAGUUCUA-GCAGUAAACUAUGUUGAAU d.16.e.N.bombycis.02.fasta AGAUGAUU-AGAUA--CCAUUGUAGUUCUA-GCAGUAAACUAUGUUGAAU d.16.e.V.imperfecta.fasta AGAUGAUU-AGAUA--CCAUUGUAGUUCUA-GCAGUAAACUAUGUUGAAU d.16.e.N.furnacalis.fasta AGAUGAUU-AGAUA--CCAUUGUAGUUCUA-GCAGUAAACUAUGUUAAAU d.16.e.Microsporidium57864.fas AGAUGAUU-AGAUA--CCAUUGUAGUUCCA-GCAGUAAACUAUGCCGACG d.16.e.Vairimorpha.sp.C21.fast AGAUGAUU-AGAUA--CCAUUGUAGUUCCA-GCAGUAAACUAUGCCAACG d.16.e.N.oulemae.fasta AGAUGAUU-AGAUA--CCAUUGUAGUUCCA-GCAGUAAACUAUGCCGACG d.16.e.N.necatrix.fasta AGAUGAUU-AGAUA--CCAUUGUAGUUCCA-GCAGUAAACUAUGCCGACG d.16.e.V.necatrix.fasta AGAUGAUU-AGAUA--CCAUUGUAGUUCCA-GCAGUAAACUAUGCCGACG d.16.e.N.apis.fasta AGAUGAUU-AGAUA--CCAUUGUAGUUCCA-GCAGUAAACUAUGCCGACG d.16.e.O.occidentalis.fasta AGAUGAUU-AGAUA--CCAUUGUAGUUCCA-GCAGUAAACUAUGCCGACG d.16.e.Microsporidium.sp.DP119 AGGUGAUU-AGAGA--CCGCUGUAGUUCUA-ACUGUAAACUUUGCCGACA d.16.e.V.corneae.fasta AAGUCAUU-AGAUA--CCGCAGUAGUUCCA-GCAGUAAAAGAUGCCGACA d.16.e.A.michaelis.fasta AUACGAUU-AGAUA--CCGUAGUAGUUCUA-GCAGUGACCGAUGAUGAUU d.16.e.T.contejeani.fasta AGACGAUU-AGAGA--CCGUCGUAGUUCCGYGCAGUAAACYAUGUUAUAU d.16.e.E.hellem.fasta AAUCGAUU-AGAUA--CCGUUUUAGUUCUA-GCAGUAAACGAUGCCGACU d.16.e.Encephalitozoon.sp.fast AAUCGAUU-AGAUA--CCGUUUUAGUUCUA-GCAGUAAACGAUGCCGACU d.16.e.E.cuniculi.fasta AAUCGAUU-AGAUA--CCGUUUUAGUUCUA-GCAGUAAACGAUGCCGACU d.16.e.O.colligata.fasta AAUCGAUU-AGAUA--CCGUUUUAGUUCUG-GCAGUAAACGAUGCUGACG d.16.e.E.salmonis.fasta AAGUGAUU-AGAUA--CCGCUGUAGUUCCA-GCAGUAAACUAUGCCGACA d.16.e.N.salmonis.fasta AAGUGAUU-AGAUA--CCGCUGUAGUUCCA-GCAGUAAACUAUGCCGACA d.16.e.Enterocytozoonidae.sp.f AAGUGAUU-AGACA--CCGCUGUAGUUCUA-GCAGUAAACGAUGCCGACA d.16.e.E.bieneusi.fasta AAGUGAUU-AGACA--CCGCUGUAGUUCCU-GCAGUAAACUAUGCCGACA d.16.e.B.algerae.fasta AGAUGAUU-AGAUA--CCGUUGUAGUUCCG-GCCGUAAAUUAUGCCAACU d.16.e.T.solenopsae.fasta AGAUGAUU-AGAUA--CCGUUGUAGUUCCG-GCCGUAAAUUAUGCCAACU d.16.e.V.acridophagus.fasta AGAUGAUU-AGAUA--CCGUUGUAGUUCCG-GCCGUAAACCAUGCCUACU d.16.e.Bacillidium.sp.fasta AGAUGAUU-AGAUA--CCGUCGUAGUUCUA-GCUGUAAACGAUGCCGACU d.16.e.P.cristatellae.fasta AGAUGAUU-AGAUA--CCGUCGUAGUUCCA-GCUGUAAACUAUGCCGACU d.16.e.Pleistophora.sp.fasta AAGUGAUU-AGAUA--CCGCUGUAGUUCCA-GCAGUAAAAGAUGCCGACA d.16.e.O.operophterae.fasta AAGUGAUU-AGAGA--CCGCUGUAGUUCCG-GCAGUAAACGAUGCCGACA d.16.e.F.magnivora.fasta AGGUGAUU-AAAGA--CCCCUGUAGUUCCG-GCCGUAAACUAUGCCAACU d.16.e.G.atherinae.fasta AGACGAUU-AGAGA--CCGUUGUAGUUCUA-GCAGUAAACGAUGCCGAUA d.16.e.Ichthyosporidium.sp.fas AGACGAUU-AGAGA--CCGUUGUAGUUCUA-GCAGUAAACAAUGCCGAUG d.16.e.L.acerinae.fasta AGACGAUU-AGAGA--CCGUUGUAGUUCUA-GCAGUAAACGAUGCCGAUG d.16.e.H.anguillarum.fasta AGACGAUU-AGAGA--CCGUUGUAGUUCUA-GCAGUAAACGAUGCCGAUG d.16.e.P.mirandellae.fasta AGACGAUU-AGAGA--CCGUUGUAGUUCUA-GCAGUAAACGAUGCCGAUG d.16.e.T.hominis.fasta AGACGAUU-AGAGA--CCGUUGUAGUUCUA-GCAGUAAACGAUGCCGAUG d.16.e.V.culicis.fasta AGACGAUU-AGAGA--CCGUUGUAGUUCUA-GCAGUAAACGAUGCCGAUG d.16.e.P.hippoglossoideos.fast AGAUGAUU-AGAGA--CCGUUGUAGUUCUA-GCAGUAAACGAUGCCGAUG d.16.e.Microgemma.sp.fasta AGACGAUU-AGAGA--CCGUAGUAGUUCCA-GCAGUAAACGAUGCCAACA d.16.e.S.lophii.fasta AGACGAUU-AGAGAGACCGUAGUAGUUCCA-GCAGUAAACGAUGCCUACG d.16.e.Pleistophora.sp.LS.fast AUACGAUU-AGAUA--CCGUAGUAGUUCGA-GCAGUUAACGAUGCCGACU d.16.e.D.gammarellum.fasta AAACGAUU-AGAGA--CCGGAGUAGUUCUA-GCAGUAAACUAUGCCGACU d.16.e.M.prosopium.fasta AGACGAUU-AGAGA--CCGUUGUAGUUCUA-GCAGUAAACGAUGCCGACG d.16.e.A.scoticae.fasta AGAUGAUU-AGAGA--CCGUCGUAGUUCCG-GCAGUAAACGAUGCCAACG d.16.e.P.whitei.fasta AGAUGAUU-AGAUA--CCGUCGUAGUUCCG-GCAGUAAACGAUGCCGACG * * a.16.c.C.coccineum.fasta AA----------GCGCUGUGU--A-------------------------- a.16.c.C.ruber.fasta AA----------GUGCUGUGUGAA-------------------------- d.16.c.N.tabacum.fasta AG----------GCGCUGUGCG-A-------------------------- d.16.c.S.oleracea.fasta AG----------GCGCUGUGCGUA-------------------------- d.16.c.Z.mays.fasta AG----------GUGCUGUGCGAC-------------------------- d.16.c.M.polymorpha.fasta AA----------GCGCUGUGCU-A-------------------------- d.16.c.R.communis.fasta GG----------GCGCUGUGCGUA-------------------------- d.16.c.C.vulgaris.fasta AG----------AUGUUGGGUAGG-------------------------- d.16.c.P.wickerhamii.fasta AG----------GUGUUGGGUGUA-------------------------- d.16.c.P.minor.fasta AA----------GUGCUUGGGCCG-------------------------- d.16.c.N.olivacea.fasta AA----------GUGCUGUGCGGU-------------------------- d.16.c.P.parkeae.fasta AA----------GUGGUGCGAGUU-------------------------- d.16.c.C.reinhardtii.fasta AA----------GUGCUGCCG----------------------------- b.16.m.A.castellanii.fasta -G----------AUUAUACUGCGA-------------------------- d.16.c.P.thurberi.fasta AG----------GCUAUAAACAAA-------------------------- b.16.m.C.crispus.fasta -C----------AUUUUGGAGAUU-------------------------- d.16.c.T.gondii.fasta CG----------GUACUGGAGACA-------------------------- b.16.m.N.crassa.fasta AU----------AGGUUAGAU----------------------------- b.16.m.P.anserina.fasta AU----------AGGUUAGAUAUA---GUUAAAUACAAACAAGGGCGUAA b.16.m.P.chrysogenum.fasta AU----------ACAUUAGAUA---------------------------- b.16.m.E.nidulans.fasta AU----------AGACUAGAAAAA---GU--------------------- b.16.m.S.cerevisiae.fasta ---------------------------ACAAUUAUUUAU----------- b.16.m.W.saturnus.m.fasta ---------------------------ACUG------------------- b.16.m.P.minor.fasta ---------------------------UUUUAUA---------------- d.16.c.P.falciparum.fasta ---------------------------AUUUU------------------ d.16.c.B.bovis.fasta ---------------------------AUUAAAAUUU------------- b.16.m.T.pyriformis.fasta ---------------------------ACUUUA----------------- d.16.m.S.sinuspaulianus.fasta GG----------UUGCUAGUUAUAACUACUUUAAGUAAAUAUUUUAUAUU b.16.m.P.tetraurelia.fasta -------------------------------------------------- b.16.m.D.discoideum.fasta -------------------------------------------------- d.16.m.P.polycephalum.fasta CA----------ACGUC--------------------------------- b.16.m.P.littoralis.fasta -------------------------------------------------- b.16.m.P.wickerhamii.fasta U------------------------------------------------- d.16.c.H.africana.fasta UA----------GCAUUACU------------------------------ d.16.c.C.fragile.fasta AA----------GUAUU--------------------------------- d.16.c.C.sertularioides.fasta CA----------GUUUU--------------------------------- d.16.c.C.humicola.fasta -------------------------------------------------- d.16.c.P.uvella.fasta -------------------------------------------------- a.16.c.G.nostochinearum.fasta AG----------GUGUUGU------------------------------- a.16.c.G.wittrockiana.fasta AG----------GUGUUGU------------------------------- d.16.c.C.paradoxa.fasta AG----------GUGUUGU------------------------------- d.16.y.C.paradoxa.fasta AG----------GUGUUGU------------------------------- d.16.c.Cryptomonas.sp.fasta AG----------AUGUUGU------------------------------- d.16.c.P.palmata.fasta AG----------AUGUUGC------------------------------- d.16.c.H.akashiwo.fasta AG----------AUGUCGC------------------------------- d.16.c.S.pseudocostatum.fasta AG----------AUGUUGA------------------------------- d.16.c.P.littoralis.fasta AG----------AUGUUGC------------------------------- d.16.c.C.caldarium.fasta AG----------AUGUUGU------------------------------- a.16.c.E.huxleyi.fasta AG----------AUGUUGC------------------------------- d.16.c.E.gracilis.fasta AA----------GUGGUGC------------------------------- d.16.b.Anabaena.sp.fasta AG----------GCGUGGC------------------------------- d.16.b.Chlorogloeopsis.PCC7518 AG----------GCGUUGC------------------------------- d.16.b.Synechococcus.sp.fasta AG----------GUGUUGC------------------------------- d.16.b.Synechocystis.PCC6803.G AG----------GCGUGGC------------------------------- d.16.b.O.agardhii.fasta AG----------GUGUGGC------------------------------- d.16.b.Pleurocapsa.7516.fasta AG----------GCGUUGC------------------------------- d.16.b.M.aeruginosa.fasta AG----------GCGUGGC------------------------------- b.16.m.C.reinhardtii.fasta ------------ACAUUA-------------------------------- d.16.m.C.eugametos.fasta --------------AUUG-------------------------------- b.16.m.M.senile.fasta GA----------AGAUGA-------------------------------- d.16.b.S.pneumoniae.fasta AG----------GUGUUAG------------------------------- d.16.b.S.pyogenes.fasta AG----------GUGUUAG------------------------------- d.16.b.B.anthracis.fasta AA----------GUGUUAG------------------------------- d.16.b.B.cereus.1.fasta AA----------GUGUUAG------------------------------- d.16.b.E.faecalis.fasta AA----------GUGUUGG------------------------------- d.16.b.E.faecium2.fasta AA----------GUGUUGG------------------------------- d.16.b.L.monocytogenes.fasta AA----------GUGUUAG------------------------------- d.16.b.B.subtilis.fasta AA----------GUGUUAG------------------------------- d.16.b.B.subtilis.GEN.fasta AA----------GUGUUAG------------------------------- d.16.b.B.halodurans.fasta AG----------GUGUUAG------------------------------- d.16.b.S.aureus.fasta AA----------GUGUUAG------------------------------- d.16.b.S.aureus.GEN.fasta AA----------GUGUUAG------------------------------- d.16.b.L.lactis.GEN.fasta AG----------AUGUAGG------------------------------- d.16.b.S.pyogenes.GEN.fasta AG----------GUGUUAG------------------------------- d.16.b.L.acidophilus.fasta AA----------GUGUUGG------------------------------- d.16.b.M.capricolum.fasta AA----------GUGUUGG------------------------------- d.16.b.M.mycoides.fasta AA----------GUGUUGG------------------------------- d.16.b.E.rhusiopathiae.fasta AA----------GUGUUGG------------------------------- d.16.b.C.innocuum.fasta AA----------GUGUUGG------------------------------- d.16.b.M.genitalium.fasta AG----------CUGUCGG------------------------------- d.16.b.M.pneumoniae.GEN.fasta AG----------CUGUCGG------------------------------- d.16.b.M.pneumoniae.fasta AG----------CUGUCGG------------------------------- d.16.b.M.gallisepticum.fasta AA----------GUGUCGG------------------------------- d.16.b.U.urealyticum.fasta AA----------AUGUCGG------------------------------- d.16.b.U.urealyticum.GEN.fasta AA----------AUGUCGG------------------------------- d.16.b.M.hyopneumoniae.fasta AG----------UUGGUGG------------------------------- d.16.b.F.necrophorum.fasta AG----------GUGUUGG------------------------------- d.16.b.F.nucleatum.fasta AG----------GUGUUGG------------------------------- d.16.b.S.moniliformis.fasta GG----------GUGUGGG------------------------------- d.16.b.C.botulinum.F.fasta AG----------GUGUAGG------------------------------- d.16.b.C.tetani.fasta AG----------GUGUAGG------------------------------- d.16.b.C.perfringens.fasta AG----------GUGU-GG------------------------------- d.16.b.C.difficile.fasta AG----------GUGUUCG------------------------------- d.16.b.E.brachy.fasta AG----------GUGU-CG------------------------------- d.16.b.Epulopiscium.sp.fasta AG----------GUGU-UG------------------------------- d.16.b.H.chlorum.fasta AG----------GUGUUGG------------------------------- b.16.m.G.max.fasta CG----------CC-CUUGGUCU--------------------------- b.16.m.O.berteriana.fasta CG----------CC-CUUGGUCU--------------------------- b.16.m.S.cereale.fasta CG----------CC-CUUGGUCU--------------------------- b.16.m.T.aestivum.fasta CG----------CC-CUUGGUCU--------------------------- d.16.m.Z.mays.fasta CG----------CC-CUUGGUCUGUCUACGCUACGCU------------- b.16.m.M.polymorpha.fasta CG----------UU-CUUGGUCUACUGAUAUCGCACUCUUUUGGGCUGAC b.16.m.N.olivacea.fasta CG----------UGACUUGAUUU--------------------------- d.16.b.G.liquefaciens.fasta GG----------AUGUUGGGUGAC-------------------------- d.16.b.B.japonicum.fasta AG----------CC-GUUAGUGG--------------------------- d.16.b.R.acidophilus.fasta AG----------CC-GUUAGGCA--------------------------- d.16.b.A.caulinodans.fasta AG----------CC-GUUGGGGA--------------------------- d.16.b.B.quintana.fasta AG----------CC-GUCGGGUG--------------------------- d.16.b.M.loti.fasta AG----------CC-GUUGGCAA--------------------------- d.16.b.A.tumefaciens.fasta AG----------CC-GUCGGGCA--------------------------- d.16.b.B.bacilliformis.fasta AG----------CC-GUCGGGCA--------------------------- d.16.b.B.henselae.fasta AG----------CC-GUCGGGCG--------------------------- d.16.b.B.melitensis.fasta AG----------CC-GUCGGGGU--------------------------- d.16.b.R.orientis.fasta AG----------CC-GUCGGCCA--------------------------- d.16.b.Methylobacterium.sp.fas AG----------CU-GUUGGGGU--------------------------- d.16.b.R.bellii.fasta AG----------AU-AUUGGGAG--------------------------- d.16.b.R.felis.URRWXCal2.fasta AG----------AU-AUCGGAAG--------------------------- d.16.b.R.prowazekii.fasta AG----------AU-AUCGGAGG--------------------------- d.16.b.R.prowazekii.GEN.fasta AG----------AU-AUCGGAGG--------------------------- d.16.b.R.rickettsii.fasta AG----------AU-AUCGGAAG--------------------------- d.16.b.A.calcoaceticus.fasta AG----------CCGUUGGGGCC--------------------------- d.16.b.P.pacificensis.fasta AG----------UCGUUGGGUCC--------------------------- d.16.b.C.marismortui.fasta AG----------CCGUUGGGUCC--------------------------- d.16.b.H.halodenitrificans.fas AG----------CCGUUGGGGUC--------------------------- d.16.b.P.aeruginosa.fasta AG----------CCGUUGGGAUC--------------------------- d.16.b.P.aeruginosa.GEN.fasta AG----------CCGUUGGGAUC--------------------------- d.16.b.Pseudomonas.sp.fasta AG----------CCGUUGGGAUC--------------------------- d.16.b.P.putida.fasta AG----------CCGUUGGAAUC--------------------------- d.16.b.C.burnetii.fasta AG----------CUGUUGGGAA---------------------------- d.16.b.M.capsulatus.fasta AG----------CCGUUGGCGG---------------------------- d.16.b.L.pneumophila.1.fasta AG----------CUGUUGGUUAU--------------------------- d.16.b.L.pneumophila.2.fasta AG----------CUGUUGGUUAU--------------------------- d.16.b.A.vinosum.fasta AG----------CCGUUUGGUCC--------------------------- d.16.b.Beggiatoa.sp.fasta AG----------AUGUUGGGGGA--------------------------- d.16.b.A.hydrophila.fasta UG----------GAGGCUGUGUC--------------------------- d.16.b.S.putrefaciens.fasta CG----------GAGUUUGGUGU--------------------------- d.16.b.C.freundii.fasta UG----------GAGGUUGUGCC--------------------------- d.16.b.S.dysenteriae.1.fasta UG----------GAGGUUGUGCC--------------------------- d.16.b.K.pneumoniae.fasta CG----------GAGGUUGUGCC--------------------------- d.16.b.P.shigelloides.fasta UG----------GAGGUUGUGCC--------------------------- d.16.b.Y.pestis.fasta UG----------GAGGUUGUGCC--------------------------- d.16.b.Y.pseudotuberculosis.fa UG----------GAGGUUGUGCC--------------------------- d.16.b.S.dysenteriae.2.fasta UG----------GAGGUUGUGCC--------------------------- d.16.b.E.coli.0157G.GEN.fasta UG----------GAGGUUGUGCC--------------------------- d.16.b.E.coli.EDL.GEN.fasta UG----------GAGGUUGUGCC--------------------------- d.16.b.E.coli.fasta UG----------GAGGUUGUGCC--------------------------- d.16.b.E.coli.K12.GEN.fasta UG----------GAGGUUGUGCC--------------------------- h.16.b.E.coli.hlxnum.fasta UG----------GAGGUUGUGCC--------------------------- m.16.b.E.coli.mhg.fasta UG----------GAGGUUGUGCC--------------------------- s.16.b.E.coli.schem.fasta UG----------GAGGUUGUGCC--------------------------- d.16.b.S.typhimurium.fasta UG----------GAGGUUGUGCC--------------------------- d.16.b.S.marcescens.fasta UG----------GAGGUUGUGCC--------------------------- d.16.b.E.tarda.fasta UG----------GAGGUUGUGCC--------------------------- d.16.b.P.vulgaris.fasta UA----------GAGGUUGUGGU--------------------------- d.16.b.V.cholerae4.fasta UG----------GAGGUUGUGCC--------------------------- d.16.b.V.cholerae5.fasta UG----------GAGGUUGUGCC--------------------------- d.16.b.V.cholerae2.fasta UG----------GAGGUUGUGCC--------------------------- d.16.b.V.cholerae6.fasta UG----------GAGGUUGUGCC--------------------------- d.16.b.V.cholerae.fasta UG----------GAGGUUGUGCC--------------------------- d.16.b.V.cholerae.GEN.fasta UG----------GAGGUUGUGCC--------------------------- d.16.b.V.parahaemolyticus.fast UG----------GAGGUUGUGGC--------------------------- d.16.b.H.influenzae7.fasta UG----------GGGAUUGGG----------------------------- d.16.b.H.influenzae8.fasta UG----------GGGGUUGGG----------------------------- d.16.b.H.influenzae6.fasta UG----------GGGAUUGGG----------------------------- d.16.b.H.influenz.fasta UN----------GGGGUUGGG----------------------------- d.16.b.H.influenzae.fasta UG----------GGGAUUGGG----------------------------- d.16.b.P.multocida.fasta UG----------GGGAUUGGG----------------------------- d.16.b.P.multocida.GEN.fasta UG----------GGGAUUGGG----------------------------- d.16.b.X.albilineans.fasta GG----------AUGUUGGGUGC--------------------------- d.16.b.X.campestris.fasta GG----------AUGUUGGGUGC--------------------------- d.16.b.X.fastidiosa.GEN.fasta GG----------AUGUUGAGUGC--------------------------- d.16.b.D.nodosus.fasta AG----------GUGUUGGGUAG--------------------------- d.16.b.F.tularensis.fasta AG----------CUGUUGGAGUCGG------------------------- d.16.b.B.parapertussis.fasta AG----------CUGUUGGG-GC--------------------------- d.16.b.B.pertussis.fasta AG----------CUGUUGGG-GC--------------------------- d.16.b.B.bronchiseptica2.fasta AG----------CUGUUGGG-GC--------------------------- d.16.b.u.proteobacterium.fasta AG----------UUGUCGGG-GA--------------------------- d.16.b.B.mallei.fasta AG----------UUGUUGGG-GA--------------------------- d.16.b.Burkholderia.sp.fasta AG----------UUGUCGGG-UC--------------------------- d.16.b.N.meningitidis.MD58.GEN AG----------CUGUUGGGCAA--------------------------- d.16.b.N.meningitidis.Z2491.GE AG----------CUGUUGGGCAA--------------------------- d.16.b.N.gonorrhoeae.fasta AG----------CUGUUGGGCAA--------------------------- d.16.b.C.testosteroni.fasta GG----------UUGUUGGG-UC--------------------------- d.16.b.D.desulfuricans.fasta AG----------AUGUCG-GGGA--------------------------- d.16.b.M.xanthus.fasta AG----------GUGUCGUGGGA--------------------------- d.16.b.D.thermophilus.fasta AG----------GUGUUG-GUGG--------------------------- d.16.b.B.burgdorferi.fasta UG----------GUGUUAA-CUA--------------------------- d.16.b.B.burgdorferi.GEN.fasta UG----------GUGUUAA-CUA--------------------------- d.16.b.B.hermsii.fasta UG----------GUGUUAA-UCG--------------------------- d.16.b.S.aurantia.fasta UG----------GUGUUGGGCCG--------------------------- d.16.b.T.pallidum.A.fasta AG----------GUGUUGGGGCA--------------------------- d.16.b.L.illini.fasta AG----------ACGUUGGAGGC--------------------------- d.16.b.L.interrogans.fasta AG----------UUGUUGGGGGU--------------------------- d.16.b.C.trachomatis.GEN.fasta UG----------AUGUGGAUGGU--------------------------- d.16.b.C.trachomatis.L2.fasta UG----------AUGUGGAUGGU--------------------------- d.16.b.C.muridarum.fasta UG----------AUGUGGAUGGU--------------------------- d.16.b.C.pneumoniae.AR39.fasta UG----------AUGUGGAUGGU--------------------------- d.16.b.C.pneumoniae.fasta UG----------AUGUGGAUGGU--------------------------- d.16.b.C.pneumoniae.J138.fasta UG----------AUGUGGAUGGU--------------------------- d.16.b.C.pneumoniae.CWL029.fas UG----------AUGUGGAUGGU--------------------------- d.16.b.C.psittaci.fasta UG----------AUGUGGAUAGU--------------------------- d.16.b.D.radiodurans.1.fasta GG----------CUAAGCGCAG---------------------------- d.16.b.D.radiodurans.GEN.fasta GG----------CUAAGCGCAG---------------------------- d.16.b.B.fragilis.fasta CG----------CUGUUUGCGAU--------------------------- d.16.b.P.gingivalis.fasta AG----------GAGUUUGCGAU--------------------------- d.16.b.C.vibrioforme.fasta AG----------AUGUUGGUCAU--------------------------- d.16.b.C.jejuni.fasta AG----------UUGUUGGGGUG--------------------------- d.16.b.C.jejuni.GEN.fasta AG----------UUGUUGGGGUG--------------------------- d.16.b.C.sputorum.fasta GG----------UUGUUGCUGUG--------------------------- d.16.b.H.pylori.26695.GEN.fast AG----------UUGUUGGAGGG--------------------------- d.16.b.H.pylori.J99.GEN.fasta AG----------UUGUUGGAGGG--------------------------- d.16.b.H.pylori2.fasta AG----------UUGUUGGAGGG--------------------------- d.16.b.A.capsulatum.fasta UG----------GUGUGGCGGG---------------------------- d.16.b.H.foetida.fasta UG----------GUGUGGUGGG---------------------------- d.16.b.A.globiformis.fasta AG----------GUGUGGGGGA---------------------------- d.16.b.M.luteus.fasta AG----------GUNUGGGGAC---------------------------- d.16.b.Frankia.sp.fasta AG----------GUGUGGGGGA---------------------------- d.16.b.S.bottropensis.fasta AG----------GUGUUGGCGA---------------------------- d.16.b.S.scabiei.fasta AG----------GUGUUGGCGA---------------------------- d.16.b.S.neyagawaensis.fasta AG----------GUGUUGGCGA---------------------------- d.16.b.S.diastatochromogenes.f AG----------GUGUUGGCGA---------------------------- d.16.b.Streptomyces.sp.fasta AG----------GUGUUGGCGA---------------------------- d.16.b.S.acidiscabies.fasta AG----------GUGUUGGCGA---------------------------- d.16.b.S.griseus.fasta AG----------GUGUUGGCGA---------------------------- d.16.b.S.ornatus.fasta AG----------GUGUUGGCGA---------------------------- d.16.b.S.subrutilus.fasta AG----------GUGUUGGCGA---------------------------- d.16.b.S.bikiniensis.fasta AG----------GUGUUGGCGA---------------------------- d.16.b.S.galbus.fasta AG----------GUGUUGGCGA---------------------------- d.16.b.S.hygroscopicus.fasta AG----------GUGUUGGCGA---------------------------- d.16.b.S.lincolnensis.fasta AG----------GUGUUGGCGA---------------------------- d.16.b.S.coelicolor.fasta AG----------GUGUGGGCAA---------------------------- d.16.b.S.tendae.fasta AG----------GUGUGGGCAA---------------------------- d.16.b.S.ambofaciens.fasta AG----------GUGUGGGCAA---------------------------- d.16.b.S.eurythermus.fasta AG----------GUGUGGGCAA---------------------------- d.16.b.S.nodosus.fasta AG----------GUGUGGGCAA---------------------------- d.16.b.S.sampsonii.fasta AG----------GUGUGGGCAA---------------------------- d.16.b.S.glaucescens.fasta AG----------GUGUGGGCAA---------------------------- d.16.b.S.pseudogriseolus.fasta AG----------GUGUGGGCGA---------------------------- d.16.b.S.caelestis.fasta AG----------GUGUGGGCAA---------------------------- d.16.b.S.bluensis.fasta AG----------GUGUGGGCAA---------------------------- d.16.b.S.espinosus.fasta AG----------GUGUGGGCGA---------------------------- d.16.b.S.mashuensis.fasta AG----------GUGUGGGCAA---------------------------- d.16.b.S.rimosus.fasta AG----------GUGUGGGCGA---------------------------- d.16.b.S.limosus.fasta AG----------GUGUGGGCAA---------------------------- d.16.b.S.odorifer.fasta AG----------GUGUGGGCAA---------------------------- d.16.b.S.felleus.fasta AG----------GUGUGGGCAA---------------------------- d.16.b.S.albidoflavus.fasta AG----------GUGUGGGCAA---------------------------- d.16.b.S.gougerotii.fasta AG----------GUGUGGGCAA---------------------------- d.16.b.S.rutgersensis.fasta AG----------GUGUGGGCAA---------------------------- d.16.b.S.intermedius.fasta AG----------GUGUGGGCAA---------------------------- d.16.b.S.thermodiastaticus.fas AG----------GUGUGGGCAG---------------------------- d.16.b.S.thermoviolaceus.fasta AG----------GUGUGGGCAG---------------------------- d.16.b.S.thermovulgaris.1.fast AG----------GUGUGGGCGG---------------------------- d.16.b.S.thermovulgaris.2.fast AG----------GUGUGGGCGG---------------------------- d.16.b.S.macrosporus.fasta AG----------GUGUGGGCGG---------------------------- d.16.b.S.megasporus.fasta AG----------GUGUGGGCGG---------------------------- d.16.b.S.thermolineatus.fasta AG----------GUGUGGGCGA---------------------------- d.16.b.M.tuberculosis.2.fasta AG----------GUGUGGGUUU---------------------------- d.16.b.M.tuberculosis.3.fasta AG----------GUGUGGGUUU---------------------------- d.16.b.M.avium.fasta AG----------GUGUGGGUUU---------------------------- d.16.b.M.leprae.fasta AG----------GUGUGGGUUU---------------------------- d.16.b.M.leprae.GEN.fasta AG----------GUGUGGGUUU---------------------------- d.16.b.M.tuberculosis.CDC1551. AG----------GUGUGGGUUU---------------------------- d.16.b.M.tuberculosis.GEN.fast AG----------GUGUGGGUUU---------------------------- d.16.b.N.asteroides.fasta AG----------GUGUGGGUUU---------------------------- d.16.b.R.erythropolis.fasta AG----------GUGUGGGUU----------------------------- d.16.b.C.diphtheriae.fasta AG----------GUGUGAGGGU---------------------------- d.16.b.A.israelii.fasta AG----------GUGUGGGGGGU--------------------------- d.16.b.B.hyodysenteriae.fasta AG----------GUGCUUCUAU---------------------------- d.16.b.G.subterranea.fasta AG----------GUGUGGGGCAA--------------------------- d.16.b.P.miotherma.fasta AG----------GUGUAGGGAGC--------------------------- d.16.b.B.andersonii.fasta UA----------GAGUUGCGCGA--------------------------- d.16.b.H.aurantiacus.fasta AG----------GUGUGGGAUGGC-------------------------- d.16.b.Leptospirillium.sp.fast AA----------GUGUGGGAGGG--------------------------- d.16.b.A.aeolicus.fasta AG----------GGCUUGUCC----------------------------- d.16.b.A.pyrophilus.fasta AG----------GGCUUGUCC----------------------------- d.16.b.T.maritima.fasta AG----------GUGUGGGGG----------------------------- d.16.b.T.maritima.GEN.fasta AG----------GUGUGGGGG----------------------------- n.16.b.T.thermophilus.2.num.fa AG----------GUCUCUG------------------------------- s.16.b.T.thermophilus.2.schem. AG----------GUCUCUG------------------------------- d.16.b.T.thermophilus.2.fasta AG----------GUCUCUG------------------------------- s.16.b.T.thermophilus.1.schem. AG----------GUCUCUG------------------------------- n.16.b.T.thermophilus.1.num.fa AG----------GUCUCUG------------------------------- d.16.b.T.thermophilus.1.fasta AG----------GUCUCUG------------------------------- d.16.b.T.aquaticus.fasta AG----------GUCUCUG------------------------------- d.16.b.T.roseum.fasta AG----------GUGUGGGUGGUG-------------------------- d.16.b.P.marina.fasta GG----------AUCGAGGGGAC--------------------------- d.16.b.P.staleyi.fasta GG----------ACCG--GAGCU--------------------------- d.16.b.P.Schlesner.fasta GG----------AUCGAAGGGAU--------------------------- d.16.b.G.obscuriglobus.1.fasta AG----------AUAGUAGACCC--------------------------- d.16.b.I.pallida.fasta UG----------GCAGU-GGGUU--------------------------- d.16.a.P.abyssi.fasta AG----------GUGUCGGGCGAGCUUC---------------------- d.16.a.P.horikoshii.fasta AG----------GUGUCGGGCGAGCUUC---------------------- d.16.a.P.furiosus.fasta AG----------GUGUCGGGCGAGCUUC---------------------- d.16.a.T.celer.fasta AG----------GUGUCGGGCGAGCUUC---------------------- d.16.a.A.fulgidus.fasta AG----------GUGUCACCGAAGCUAC---------------------- d.16.a.N.equitans.fasta AC----------CUGCUGGGCGGGCUAC---------------------- d.16.a.A.pernix.K1.fasta AG----------GUGUUGGGCGGGCGUGC--------------------- d.16.a.P.occultum.fasta AG----------GUGUUGGGCGGGCUUG---------------------- d.16.a.T.tenax.fasta AG----------CUGUCGGCCGGGCUUA---------------------- d.16.a.S.acidocaldarius.fasta AG----------GUGUCGAGUAGGCUUA---------------------- d.16.a.S.solfataricus.fasta AG----------GUGUCGAGUAGGCUUA---------------------- d.16.a.S.solfataricus.2.fasta AG----------GUGUCACAUGGGCUUA---------------------- d.16.a.M.thermautotrophicus.1. UG----------GUGUUGGGAUGGCUUC---------------------- d.16.a.M.thermautotrophicus.2. UG----------GUGUUGGGAUGGCUUC---------------------- d.16.a.M.formicicum.fasta UG----------GUGUUGGGAUGGCUCC---------------------- d.16.a.M.vannielii.fasta AG----------GUGUCACCUGGGCCUC---------------------- d.16.a.H.marismortui.rrnA.fast AG----------GUGUGCCGUAGGCUAC---------------------- d.16.a.H.marismortui.rrnB.fast AG----------GUAUGUCACGCGCCAU---------------------- d.16.a.Halobacterium.sp.fasta AG----------GUGUGGCGCAGGCUAC---------------------- d.16.a.N.bangense.fasta AG----------GUGUGACACAAACUAC---------------------- d.16.a.N.innermongoliae.fasta AG----------GUGUGACACAGGCUAC---------------------- d.16.a.H.volcanii.fasta AG----------GUGUGACACAGGCUAC---------------------- d.16.a.M.hungatei.fasta AG----------GUGUGUCAGUGACCAC---------------------- d.16.a.P.torridus.fasta UG----------GUGUUGCCUUUCCGUU---------------------- d.16.a.T.acidophilum.fasta UG----------GUGUUGCUUCUCCGUU---------------------- a.16.e.G.ardeae.fasta CG----------GCGCCGGCGU---------------------------- d.16.e.G.intestinalis.fasta CG----------CGGCCGGCGCGCGCG----------------------- a.16.e.G.muris.fasta AG----------AGACUGGCCAGG-------------------------- d.16.e.A.bracteata.fasta CG----------C------------------------------------- d.16.e.Glomus.sp.W3349.fasta AG----------GAAUCAGACGAUGU------------------------ d.16.e.S.cerradensis.fasta AG----------GGAUCGGACGAUGU------------------------ a.16.e.G.intraradices.fasta AG----------GGAUCGGAUGAUGU------------------------ d.16.e.S.culisetae.fasta CG----------GGAUCAGGUAAUGU------------------------ a.16.e.P.balamuthi.fasta AG----------AGAUCGGAAGACGC------------------------ d.16.e.A.flavus.fasta AG----------GGAUCGGGCGGUGU------------------------ d.16.e.T.caries.fasta AG----------GGAUUGGACGAUGU------------------------ d.16.e.M.circinelloides.fasta AG----------AGAUUGGGCUUGUU------------------------ d.16.e.M.racemosus.fasta AG----------AGAUUGGGCUUGUU------------------------ d.16.e.R.oryzae.fasta AG----------AGAUUGGGCGUGUU------------------------ a.16.e.M.edulis.fasta AG----------CGAUCCGCCGGAGU------------------------ a.16.e.P.magellanicus.fasta AG----------CGAUCCGCCGGAGU------------------------ b.16.e.E.granulosus.fasta GA----------CGAUCCGUGGUGGUA----------------------- d.16.e.D.melanogaster.fasta AG----------CAAU---UGGGUGUA----------------------- b.16.e.C.koreana.fasta AG----------CGAUCCGUCGUCGU------------------------ b.16.e.A.australis.fasta AG----------CAAUCCGCCUGAGU------------------------ b.16.e.O.utahensis.fasta AG----------CGAUCCGCCGAAGU------------------------ b.16.e.A.salina.fasta AG----------CGAUCCGCGGACGU------------------------ d.16.e.M.musculus.fasta GG----------CGAUGCGGCGGCGU------------------------ d.16.e.R.norvegicus.fasta GG----------CGAUGCGGCGGCGU------------------------ d.16.e.H.sapiens.fasta GG----------CGAUGCGGCGGCGU------------------------ d.16.e.O.cuniculus.fasta GG----------CGAUGCGGCGGCGU------------------------ d.16.e.X.borealis.fasta AG----------CGAUCCGGCGGCGU------------------------ d.16.e.X.laevis.fasta AG----------CGAUCCGGCGGCGU------------------------ d.16.e.A.castellanii.fasta AGCGAUUAGGAGACGU---UGAAUACAAAACACCACCAUCGGCGCGGUCG d.16.e.B.mandrillaris.fasta AGCGAUUGGGAGACGU---UACACAU------------------------ d.16.e.P.falciparum.A.fasta AG----------GUGU---UGGAUGAAAGUGUUAAAAAUAAAAGU----- d.16.e.P.falciparum.S.fasta AG----------GUGU---UGGAUGAAUAUAAAAAAUAUAUAAAUAUGUA d.16.e.P.vivax.A.fasta AG----------GCUU---UGGAUGAAAGAUUUUAAAAUAAGAAU----- d.16.e.P.vivax.O.fasta AGACU-----AGGCUU---UAGAUGAAAAGUUUUAAAAUAAGAGU----- d.16.e.P.vivax.S.fasta AG----------GUUU---UGGAUGAAAGUUAAACAAAUAAGGAU----- d.16.e.E.histolytica.fasta AA----------GGAU---UGGAUGAAAUUCAGAUGUACAAAGAUAGAGA d.16.e.I.hoferi.fasta AG----------GGAU---UAGUGGA------------------------ d.16.e.Dermocystidium.sp.fasta AG----------GGAU---UGGUAGAU----------------------- d.16.e.S.destruens.fasta AG----------GGAU---UGGUGGAU----------------------- d.16.e.A.unguiculata.fasta CA----------GGAU---CAUCGAGG----------------------- d.16.e.D.grandis.fasta CG----------GGAU---CGGUGUGG----------------------- d.16.e.A.macrogynus.fasta AG----------GGAU---CGGGCGCU-UGUA------------------ d.16.e.B.emersonii.fasta AG----------GGAU---CGGGCGUCAUGUA------------------ d.16.e.C.albicans.fasta AGGGAUCGG----------------------------------------- d.16.e.S.cerevisiae.fasta AGGGAUCGG----------------------------------------- d.16.e.N.crassa.fasta AGGGAUCGG----------------------------------------- d.16.e.P.anserina.fasta AGGGAUCGG----------------------------------------- d.16.e.C.immitis.fasta AGGGAUCGG----------------------------------------- d.16.e.L.major.fasta AUGAAUUGGGGAUCUU--AUGGGCCGGCCUGCGGCAGGGUUU------AC d.16.e.T.cruzi.fasta AUGAAUUGGGGAGUUU--UUGGUCGUAGGCGUGGUCGGGCUUGAUUAUAU d.16.e.T.brucei.fasta AUGAAUUGGGGAACAUCAUUGGGUGCCCGUGUGGCGGCCUUU-------- d.16.e.P.carinii.fasta AGAGAUCGG----------------------------------------- d.16.e.C.neoformans.fasta AG----------GGAU---CGGCCCAC----------------------- d.16.e.Fungus.sp.QPX.fasta AG----------GGAU---CGGGCCAC----------------------- d.16.e.U.maydis.fasta CC----------GAAU---CGGUCGAU----------------------- d.16.e.M.leidyi.fasta GC----------GGAUCGGAGGUCG------------------------- d.16.e.T.cystophora.fasta AG----------GGAUCAGCGGGCG------------------------- d.16.e.M.prolifera.fasta AG----------GGAUCGGUGGAUG------------------------- d.16.e.P.haeckeli.fasta AG----------GGAUCGGUGGACG------------------------- d.16.e.E.rotunda.fasta CA----------GGAUCAGUGAACGUU----------------------- d.16.e.P.chromatophora.fasta GA----------GGAUCCGUGGACGUC----------------------- d.16.e.A.majus.fasta AG----------GGAUCGGCGGAUG------------------------- d.16.e.S.indicum.fasta AG----------GGAUCGGCGGAUG------------------------- d.16.e.D.grandiflora.fasta AG----------GGAUCGGCGGAUG------------------------- d.16.e.Pla.lanceolata.fasta AG----------GGAUCGGCGGAUG------------------------- d.16.e.N.tabacum.fasta AG----------GGAUCGGCGGAUG------------------------- d.16.e.A.thaliana.fasta AG----------GGAUCAGCGGAUG------------------------- d.16.e.S.alba.fasta AG----------GGAUCAGCGGAUG------------------------- d.16.e.S.tuberosum.fasta AG----------GGGUCGGCGGAUG------------------------- d.16.e.F.x.ananassa.fasta AG----------GGAUCGGCGGAUG------------------------- d.16.e.G.max.fasta AG----------GGAUCAGCGGAUG------------------------- d.16.e.O.sativa.fasta AG----------GGAUCGGCGGAUG------------------------- d.16.e.Z.mays.fasta AG----------GGAUCAGCGG-UG------------------------- d.16.e.A.verticilliflorum.fast AG----------GGAUCAGCGGAUG------------------------- d.16.e.G.spirotaenia.fasta AG----------GGAUUGGCGGAUG------------------------- d.16.e.Staurastrum.sp.M752.fas AG----------GGAUUGGCGGA--------------------------- d.16.e.C.paradoxa.fasta UA----------CGAUCAGCAGGUG------------------------- d.16.e.G.nostochinearum.fasta GC----------GGAUCAGAGGAUG------------------------- d.16.e.G.wittrockiana.fasta GC----------GGAUCAGCGGAUG------------------------- d.16.e.C.luteoviridis.fasta AG----------GGAUCGGCGGGUG------------------------- d.16.e.O.longa.fasta AG----------GGAUCGGAGG-CG------------------------- d.16.e.P.weissei.fasta AG----------GGAUCGGAGG-CG------------------------- d.16.e.C.citrina.fasta AG----------GGAUCGGAGG-CG------------------------- d.16.e.G.steinii.fasta AG----------GGAUCAGAGG-CG------------------------- d.16.e.Ple.lanceolata.fasta AG----------GGAUCGGAGG-CG------------------------- d.16.e.O.quadricornutus.fasta AG----------GGAUCGGAGG-CG------------------------- d.16.e.S.lemnae.fasta AG----------GGAUCGGAGG-CG------------------------- d.16.e.S.mytilus.fasta AG----------GGAUCGGAGG-CG------------------------- d.16.e.E.mobilis.fasta AG----------GGAUCGGAGG-CG------------------------- d.16.e.O.granulifera.1.fasta AG----------GGAUCGGAGG-CG------------------------- d.16.e.O.granulifera.2.fasta AG----------GGAUCGGAGG-CG------------------------- d.16.e.U.gallina.fasta AG----------GGAUCGGAGG-CG------------------------- d.16.e.U.pisces.fasta AG----------GGAUCGGAGG-CU------------------------- d.16.e.P.lepisma.fasta AG----------GGAUCGGAGG-CG------------------------- d.16.e.U.grandis.fasta AG----------GGAUCGGAGG-UG------------------------- d.16.e.B.coli.fasta AG----------GGAUUGGAA--UG------------------------- d.16.e.E.aediculatus.fasta AG----------GGAUCGGAGGGCG------------------------- d.16.e.T.thermophila.fasta CG----------GGAUCGGC---UG------------------------- d.16.e.Bangia.sp.NWT.fasta GG----------GGAUUGGCGAGGG------------------------- d.16.e.Bangia.sp.VIS7.fasta GG----------GGAUUGACAUGGG------------------------- d.16.e.E.carnea.fasta GG----------GGAUUAGCAGAUG------------------------- d.16.e.R.parvula.fasta GG----------GGAUUAGCCGAUG------------------------- d.16.e.C.coeruleus.fasta GG----------GGAUUGGUGGACG------------------------- d.16.e.P.aerugineum.1.fasta GG----------GGAUUGGUGGACG------------------------- d.16.e.R.maculata.fasta AG----------GGAUCAGGCGA-G------------------------- d.16.e.A.ambigua.fasta AG----------GGAUUUGCGGUUG------------------------- d.16.e.A.baicalensis.fasta AG----------GGAUUUGCGGUUG------------------------- d.16.e.S.nipponica.fasta AG----------GGAUUAGCGGUCG------------------------- d.16.e.C.radiatus.fasta AG----------GGAUUGGCAGGAG------------------------- d.16.e.C.criophilum.fasta AG----------GGAUCGGUGGAAU------------------------- d.16.e.A.capitellata.fasta AG----------GGAUUGGC-GGGU------------------------- d.16.e.S.pupula.fasta AG----------GGAUUGGCAGGGC------------------------- d.16.e.T.antarctica.fasta AG----------GGAUUGGUGGAGU------------------------- d.16.e.E.triangulatum.fasta AG----------GGAUUGGUGGAGU------------------------- d.16.e.A.bongranii.fasta AG----------GGAUUGGCGGAGU------------------------- d.16.e.Pseudogomphonema.sp.fas AG----------GGAUUGGUGGAGU------------------------- d.16.e.D.tenue.fasta AG----------GGAUUGGCGGUCG------------------------- d.16.e.G.marina.fasta AG----------GGAUUGGUGGGCG------------------------- d.16.e.Thalassionema.sp.fasta AG----------GGAUUGGCGGUCG------------------------- d.16.e.R.belgicae.fasta AG----------GGAUUGGCGGGCG------------------------- d.16.e.Undatella.sp.fasta AG----------GGAUCAGGCAAGU------------------------- d.16.e.C.belgica.fasta CG----------GGAUUGGCGGACG------------------------- d.16.e.O.sinensis.fasta CG----------GGAUUGGCGGUCG------------------------- d.16.e.D.brightwellii.fasta AG----------GGAUCGGCGGUCU------------------------- d.16.e.L.undulatum.fasta AG----------GGAUCGGCGGUCG------------------------- d.16.e.T.eccentrica.fasta CG----------GGAUCGGUGGUCU------------------------- d.16.e.T.pseudonana.fasta CG----------GGAUUGGCGGU-U------------------------- d.16.e.S.costatum.fasta CA----------GGAUUGGCGGU-U------------------------- d.16.e.P.laevis.fasta CG----------GGAUUGGCGGGUG------------------------- d.16.e.L.borealis.fasta CG----------GGAUUGGACGUUG------------------------- d.16.e.P.pseudodenticulata.fas CG----------GGAUUGGGCGUUG------------------------- d.16.e.B.mediterranea.fasta AG----------GGAUUGGCGGUCG------------------------- d.16.e.B.pacifica.fasta AG----------GGAUUGGCGGUCG------------------------- d.16.e.L.minuta.fasta AG----------GGAUUGGCGGACG------------------------- d.16.e.L.danicus.fasta AG----------GGAUCGGCGGAGG------------------------- d.16.e.Chaetoceros.sp.fasta CA----------GGAUUGUCAGGUG------------------------- d.16.e.A.invadans.fasta CG----------GGAUUGGCAGUCG------------------------- d.16.e.L.giganteum.fasta CG----------GGAUUGGCAGUCG------------------------- d.16.e.M.varians.fasta AG----------GGAUCAUCAGUUG------------------------- d.16.e.B.hominis.fasta AG----------GGGUUAGUAGAGG------------------------- d.16.e.P.marinus.fasta AG----------GGAUUGGGGGUCGU------------------------ d.16.e.T.gondii.fasta AG----------AGAUAGGAAAACGU------------------------ d.16.e.A.fundyense.fasta AG----------AGAUUGGAGGUUGU------------------------ d.16.e.B.bigemina.fasta AG----------GGAUUGGAGGUCGU------------------------ d.16.e.B.canis.fasta AG----------UGAUUGGAGGUCGU------------------------ d.16.e.Babesia.sp.OKD.fasta AG----------GGAUUGGAGGUCGU------------------------ d.16.e.B.microti.1.fasta AG----------AGAUUGGAGGUCGU------------------------ d.16.e.B.microti.2.fasta AG----------AGAUUGGAGGUCGU------------------------ d.16.e.B.microti.3.fasta AG----------AGAUUGGAGGUCGU------------------------ d.16.e.B.microti.4.fasta AG----------AGAUUGGAGGUCGU------------------------ d.16.e.B.microti.5.fasta AG----------AGAUUGGAGGUCGU------------------------ d.16.e.B.rodhaini.fasta AG----------AGAUUGGAGGUCGU------------------------ d.16.e.B.gibsoni.fasta AG----------AGAUUGGAGGUCGU------------------------ d.16.e.B.bovis.fasta AG----------GGAUUGGUGGUCGU------------------------ d.16.e.J.libera.fasta AG----------GGAUUGGAGGAUGC------------------------ d.16.e.R.americana.fasta GG----------GGAUUGGAGAACGUA----------------------- d.16.e.B.ostreae.fasta AA----------GCAUUGGGCUAUCA------------------------ d.16.e.A.dasyae.fasta GG----------GGAUCGGGCG-G-------------------------- d.16.e.A.hermannii.fasta GG----------GGAUCGGGCG-G-------------------------- d.16.e.N.helminthoides.fasta GG----------GGAUCGGGCG-G-------------------------- d.16.e.B.gelatinosum.fasta GG----------GGAUCGGGCG-G-------------------------- d.16.e.N.tortuosa.fasta GG----------GGAUCGGGCG-G-------------------------- d.16.e.T.hispida.fasta GG----------GGAUCGGACG-G-------------------------- d.16.e.T.violacea.4.fasta GG----------GGAUCGGACG-G-------------------------- d.16.e.T.violacea.1.fasta GG----------GGAUCGGGCG-A-------------------------- d.16.e.T.violacea.2.fasta GG----------GGAUCGGGCG-A-------------------------- d.16.e.N.shawii.fasta GG----------GGAUCGGGCG-G-------------------------- d.16.e.B.investiens.fasta GG----------GGAUCGGGCA-G-------------------------- d.16.e.B.macrosporum.fasta GG----------GGAUCGGGCG-G-------------------------- d.16.e.A.plicata.fasta GG----------GGAUCGGGCG-G-------------------------- d.16.e.C.officinalis.fasta GG----------GGAUCGGGCGAG-------------------------- d.16.e.R.carriebowensis.fasta GG----------GGAUCGGGCGUG-------------------------- d.16.e.B.hamifera.fasta GG----------GGAUCGGGCGGG-------------------------- d.16.e.G.vagum.fasta GG----------GGAUCGGGCGGC-------------------------- d.16.e.C.crispus.fasta GG----------GGAUCGGGGAGG-------------------------- d.16.e.H.plana.fasta GG----------AGAUCGGGCGGG-------------------------- d.16.e.R.leptophylla.fasta GG----------AGAUCGGGCGGG-------------------------- d.16.e.P.pulvinata.fasta GG----------AGAUCGGGUGAG-------------------------- d.16.e.C.rubrum.fasta GG----------GGAUCGGGCGUG-------------------------- d.16.e.Gracilariopsis.sp.fasta GG----------AGAUCGGACAAG-------------------------- d.16.e.B.moritziana.fasta GG----------GGAUCGGGCGUG-------------------------- d.16.e.H.rubra.fasta GG----------GGAUCGGAAGAGU------------------------- d.16.e.D.grisea.fasta GG----------GGAUCAGGUUUAA------------------------- d.16.e.N.fowleri.fasta GA----------GUAUUUGGGAAGAC------------------------ d.16.e.N.gruberi.fasta GA----------GUAUUUGGGAAGAC------------------------ a.16.e.Hexamita.sp.fasta CA----------GAAGCGGGCUCA-------------------------- d.16.e.T.foetus.fasta GG----------GGCUUGUCCUUUUA------------------------ d.16.e.A.khaliulini.fasta CUGU---------------------------------------------- d.16.e.E.aedis.fasta UAGU---------------------------------------------- d.16.e.A.connecticus.fasta CUGU---------------------------------------------- d.16.e.I.barri.fasta GUGU---------------------------------------------- d.16.e.A.ferocious.fasta CUGU---------------------------------------------- d.16.e.Amblyospora.sp.fasta GCGU---------------------------------------------- d.16.e.C.lunata.fasta CUGA---------------------------------------------- d.16.e.P.anophelis.fasta UGGU---------------------------------------------- d.16.e.Hazardia.sp.fasta GGGG---------------------------------------------- d.16.e.H.milleri.fasta GGGG---------------------------------------------- d.16.e.P.simulii.fasta CCAC---------------------------------------------- d.16.e.W.palustris.fasta CCAC---------------------------------------------- d.16.e.Nosema.sp.03.fasta C------------------------------------------------- d.16.e.Nosema.sp.05.fasta C------------------------------------------------- d.16.e.Endoreticulatus.sp.fast C------------------------------------------------- d.16.e.Nosema.sp.02.fasta C------------------------------------------------- d.16.e.N.spodopterae.fasta C------------------------------------------------- d.16.e.N.trichoplusiae.fasta C------------------------------------------------- d.16.e.N.bombycis.27.fasta C------------------------------------------------- d.16.e.N.bombycis.02.fasta C------------------------------------------------- d.16.e.V.imperfecta.fasta C------------------------------------------------- d.16.e.N.furnacalis.fasta C------------------------------------------------- d.16.e.Microsporidium57864.fas A------------------------------------------------- d.16.e.Vairimorpha.sp.C21.fast A------------------------------------------------- d.16.e.N.oulemae.fasta A------------------------------------------------- d.16.e.N.necatrix.fasta A------------------------------------------------- d.16.e.V.necatrix.fasta A------------------------------------------------- d.16.e.N.apis.fasta A------------------------------------------------- d.16.e.O.occidentalis.fasta A------------------------------------------------- d.16.e.Microsporidium.sp.DP119 U------------------------------------------------- d.16.e.V.corneae.fasta U------------------------------------------------- d.16.e.A.michaelis.fasta U------------------------------------------------- d.16.e.T.contejeani.fasta UAUU---------------------------------------------- d.16.e.E.hellem.fasta G------------------------------------------------- d.16.e.Encephalitozoon.sp.fast G------------------------------------------------- d.16.e.E.cuniculi.fasta G------------------------------------------------- d.16.e.O.colligata.fasta G------------------------------------------------- d.16.e.E.salmonis.fasta U------------------------------------------------- d.16.e.N.salmonis.fasta U------------------------------------------------- d.16.e.Enterocytozoonidae.sp.f C------------------------------------------------- d.16.e.E.bieneusi.fasta G------------------------------------------------- d.16.e.B.algerae.fasta UGUG---------------------------------------------- d.16.e.T.solenopsae.fasta UGCA---------------------------------------------- d.16.e.V.acridophagus.fasta UGCC---------------------------------------------- d.16.e.Bacillidium.sp.fasta A------------------------------------------------- d.16.e.P.cristatellae.fasta A------------------------------------------------- d.16.e.Pleistophora.sp.fasta UGC----------------------------------------------- d.16.e.O.operophterae.fasta C------------------------------------------------- d.16.e.F.magnivora.fasta G------------------------------------------------- d.16.e.G.atherinae.fasta C------------------------------------------------- d.16.e.Ichthyosporidium.sp.fas U------------------------------------------------- d.16.e.L.acerinae.fasta C------------------------------------------------- d.16.e.H.anguillarum.fasta C------------------------------------------------- d.16.e.P.mirandellae.fasta C------------------------------------------------- d.16.e.T.hominis.fasta C------------------------------------------------- d.16.e.V.culicis.fasta C------------------------------------------------- d.16.e.P.hippoglossoideos.fast C------------------------------------------------- d.16.e.Microgemma.sp.fasta C------------------------------------------------- d.16.e.S.lophii.fasta C------------------------------------------------- d.16.e.Pleistophora.sp.LS.fast G------------------------------------------------- d.16.e.D.gammarellum.fasta U------------------------------------------------- d.16.e.M.prosopium.fasta C------------------------------------------------- d.16.e.A.scoticae.fasta GG------------------------------------------------ d.16.e.P.whitei.fasta GG------------------------------------------------ a.16.c.C.coccineum.fasta -------------------------------------------------- a.16.c.C.ruber.fasta -------------------------------------------------- d.16.c.N.tabacum.fasta -------------------------------------------------- d.16.c.S.oleracea.fasta -------------------------------------------------- d.16.c.Z.mays.fasta -------------------------------------------------- d.16.c.M.polymorpha.fasta -------------------------------------------------- d.16.c.R.communis.fasta -------------------------------------------------- d.16.c.C.vulgaris.fasta -------------------------------------------------- d.16.c.P.wickerhamii.fasta -------------------------------------------------- d.16.c.P.minor.fasta -------------------------------------------------- d.16.c.N.olivacea.fasta -------------------------------------------------- d.16.c.P.parkeae.fasta -------------------------------------------------- d.16.c.C.reinhardtii.fasta -------------------------------------------------- b.16.m.A.castellanii.fasta -------------------------------------------------- d.16.c.P.thurberi.fasta -------------------------------------------------- b.16.m.C.crispus.fasta -------------------------------------------------- d.16.c.T.gondii.fasta -------------------------------------------------- b.16.m.N.crassa.fasta -------------------------------------------------- b.16.m.P.anserina.fasta GCU----------------------------------------------- b.16.m.P.chrysogenum.fasta -------------------------------------------------- b.16.m.E.nidulans.fasta -------------------------------------------------- b.16.m.S.cerevisiae.fasta -------------------------------------------------- b.16.m.W.saturnus.m.fasta -------------------------------------------------- b.16.m.P.minor.fasta -------------------------------------------------- d.16.c.P.falciparum.fasta -------------------------------------------------- d.16.c.B.bovis.fasta -------------------------------------------------- b.16.m.T.pyriformis.fasta -------------------------------------------------- d.16.m.S.sinuspaulianus.fasta AUA----------------------------------------------- b.16.m.P.tetraurelia.fasta -------------------------------------------------- b.16.m.D.discoideum.fasta -------------------------------------------------- d.16.m.P.polycephalum.fasta -------------------------------------------------- b.16.m.P.littoralis.fasta -------------------------------------------------- b.16.m.P.wickerhamii.fasta -------------------------------------------------- d.16.c.H.africana.fasta -------------------------------------------------- d.16.c.C.fragile.fasta -------------------------------------------------- d.16.c.C.sertularioides.fasta -------------------------------------------------- d.16.c.C.humicola.fasta -------------------------------------------------- d.16.c.P.uvella.fasta -------------------------------------------------- a.16.c.G.nostochinearum.fasta -------------------------------------------------- a.16.c.G.wittrockiana.fasta -------------------------------------------------- d.16.c.C.paradoxa.fasta -------------------------------------------------- d.16.y.C.paradoxa.fasta -------------------------------------------------- d.16.c.Cryptomonas.sp.fasta -------------------------------------------------- d.16.c.P.palmata.fasta -------------------------------------------------- d.16.c.H.akashiwo.fasta -------------------------------------------------- d.16.c.S.pseudocostatum.fasta -------------------------------------------------- d.16.c.P.littoralis.fasta -------------------------------------------------- d.16.c.C.caldarium.fasta -------------------------------------------------- a.16.c.E.huxleyi.fasta -------------------------------------------------- d.16.c.E.gracilis.fasta -------------------------------------------------- d.16.b.Anabaena.sp.fasta -------------------------------------------------- d.16.b.Chlorogloeopsis.PCC7518 -------------------------------------------------- d.16.b.Synechococcus.sp.fasta -------------------------------------------------- d.16.b.Synechocystis.PCC6803.G -------------------------------------------------- d.16.b.O.agardhii.fasta -------------------------------------------------- d.16.b.Pleurocapsa.7516.fasta -------------------------------------------------- d.16.b.M.aeruginosa.fasta -------------------------------------------------- b.16.m.C.reinhardtii.fasta -------------------------------------------------- d.16.m.C.eugametos.fasta -------------------------------------------------- b.16.m.M.senile.fasta -------------------------------------------------- d.16.b.S.pneumoniae.fasta -------------------------------------------------- d.16.b.S.pyogenes.fasta -------------------------------------------------- d.16.b.B.anthracis.fasta -------------------------------------------------- d.16.b.B.cereus.1.fasta -------------------------------------------------- d.16.b.E.faecalis.fasta -------------------------------------------------- d.16.b.E.faecium2.fasta -------------------------------------------------- d.16.b.L.monocytogenes.fasta -------------------------------------------------- d.16.b.B.subtilis.fasta -------------------------------------------------- d.16.b.B.subtilis.GEN.fasta -------------------------------------------------- d.16.b.B.halodurans.fasta -------------------------------------------------- d.16.b.S.aureus.fasta -------------------------------------------------- d.16.b.S.aureus.GEN.fasta -------------------------------------------------- d.16.b.L.lactis.GEN.fasta -------------------------------------------------- d.16.b.S.pyogenes.GEN.fasta -------------------------------------------------- d.16.b.L.acidophilus.fasta -------------------------------------------------- d.16.b.M.capricolum.fasta -------------------------------------------------- d.16.b.M.mycoides.fasta -------------------------------------------------- d.16.b.E.rhusiopathiae.fasta -------------------------------------------------- d.16.b.C.innocuum.fasta -------------------------------------------------- d.16.b.M.genitalium.fasta -------------------------------------------------- d.16.b.M.pneumoniae.GEN.fasta -------------------------------------------------- d.16.b.M.pneumoniae.fasta -------------------------------------------------- d.16.b.M.gallisepticum.fasta -------------------------------------------------- d.16.b.U.urealyticum.fasta -------------------------------------------------- d.16.b.U.urealyticum.GEN.fasta -------------------------------------------------- d.16.b.M.hyopneumoniae.fasta -------------------------------------------------- d.16.b.F.necrophorum.fasta -------------------------------------------------- d.16.b.F.nucleatum.fasta -------------------------------------------------- d.16.b.S.moniliformis.fasta -------------------------------------------------- d.16.b.C.botulinum.F.fasta -------------------------------------------------- d.16.b.C.tetani.fasta -------------------------------------------------- d.16.b.C.perfringens.fasta -------------------------------------------------- d.16.b.C.difficile.fasta -------------------------------------------------- d.16.b.E.brachy.fasta -------------------------------------------------- d.16.b.Epulopiscium.sp.fasta -------------------------------------------------- d.16.b.H.chlorum.fasta -------------------------------------------------- b.16.m.G.max.fasta -------------------------------------------------- b.16.m.O.berteriana.fasta -------------------------------------------------- b.16.m.S.cereale.fasta -------------------------------------------------- b.16.m.T.aestivum.fasta -------------------------------------------------- d.16.m.Z.mays.fasta -------------------------------------------------- b.16.m.M.polymorpha.fasta UUAAGCUCGGCUUAAUGCUUAAAUUACUGCAAAGGUAG------------ b.16.m.N.olivacea.fasta -------------------------------------------------- d.16.b.G.liquefaciens.fasta -------------------------------------------------- d.16.b.B.japonicum.fasta -------------------------------------------------- d.16.b.R.acidophilus.fasta -------------------------------------------------- d.16.b.A.caulinodans.fasta -------------------------------------------------- d.16.b.B.quintana.fasta -------------------------------------------------- d.16.b.M.loti.fasta -------------------------------------------------- d.16.b.A.tumefaciens.fasta -------------------------------------------------- d.16.b.B.bacilliformis.fasta -------------------------------------------------- d.16.b.B.henselae.fasta -------------------------------------------------- d.16.b.B.melitensis.fasta -------------------------------------------------- d.16.b.R.orientis.fasta -------------------------------------------------- d.16.b.Methylobacterium.sp.fas -------------------------------------------------- d.16.b.R.bellii.fasta -------------------------------------------------- d.16.b.R.felis.URRWXCal2.fasta -------------------------------------------------- d.16.b.R.prowazekii.fasta -------------------------------------------------- d.16.b.R.prowazekii.GEN.fasta -------------------------------------------------- d.16.b.R.rickettsii.fasta -------------------------------------------------- d.16.b.A.calcoaceticus.fasta -------------------------------------------------- d.16.b.P.pacificensis.fasta -------------------------------------------------- d.16.b.C.marismortui.fasta -------------------------------------------------- d.16.b.H.halodenitrificans.fas -------------------------------------------------- d.16.b.P.aeruginosa.fasta -------------------------------------------------- d.16.b.P.aeruginosa.GEN.fasta -------------------------------------------------- d.16.b.Pseudomonas.sp.fasta -------------------------------------------------- d.16.b.P.putida.fasta -------------------------------------------------- d.16.b.C.burnetii.fasta -------------------------------------------------- d.16.b.M.capsulatus.fasta -------------------------------------------------- d.16.b.L.pneumophila.1.fasta -------------------------------------------------- d.16.b.L.pneumophila.2.fasta -------------------------------------------------- d.16.b.A.vinosum.fasta -------------------------------------------------- d.16.b.Beggiatoa.sp.fasta -------------------------------------------------- d.16.b.A.hydrophila.fasta -------------------------------------------------- d.16.b.S.putrefaciens.fasta -------------------------------------------------- d.16.b.C.freundii.fasta -------------------------------------------------- d.16.b.S.dysenteriae.1.fasta -------------------------------------------------- d.16.b.K.pneumoniae.fasta -------------------------------------------------- d.16.b.P.shigelloides.fasta -------------------------------------------------- d.16.b.Y.pestis.fasta -------------------------------------------------- d.16.b.Y.pseudotuberculosis.fa -------------------------------------------------- d.16.b.S.dysenteriae.2.fasta -------------------------------------------------- d.16.b.E.coli.0157G.GEN.fasta -------------------------------------------------- d.16.b.E.coli.EDL.GEN.fasta -------------------------------------------------- d.16.b.E.coli.fasta -------------------------------------------------- d.16.b.E.coli.K12.GEN.fasta -------------------------------------------------- h.16.b.E.coli.hlxnum.fasta -------------------------------------------------- m.16.b.E.coli.mhg.fasta -------------------------------------------------- s.16.b.E.coli.schem.fasta -------------------------------------------------- d.16.b.S.typhimurium.fasta -------------------------------------------------- d.16.b.S.marcescens.fasta -------------------------------------------------- d.16.b.E.tarda.fasta -------------------------------------------------- d.16.b.P.vulgaris.fasta -------------------------------------------------- d.16.b.V.cholerae4.fasta -------------------------------------------------- d.16.b.V.cholerae5.fasta -------------------------------------------------- d.16.b.V.cholerae2.fasta -------------------------------------------------- d.16.b.V.cholerae6.fasta -------------------------------------------------- d.16.b.V.cholerae.fasta -------------------------------------------------- d.16.b.V.cholerae.GEN.fasta -------------------------------------------------- d.16.b.V.parahaemolyticus.fast -------------------------------------------------- d.16.b.H.influenzae7.fasta -------------------------------------------------- d.16.b.H.influenzae8.fasta -------------------------------------------------- d.16.b.H.influenzae6.fasta -------------------------------------------------- d.16.b.H.influenz.fasta -------------------------------------------------- d.16.b.H.influenzae.fasta -------------------------------------------------- d.16.b.P.multocida.fasta -------------------------------------------------- d.16.b.P.multocida.GEN.fasta -------------------------------------------------- d.16.b.X.albilineans.fasta -------------------------------------------------- d.16.b.X.campestris.fasta -------------------------------------------------- d.16.b.X.fastidiosa.GEN.fasta -------------------------------------------------- d.16.b.D.nodosus.fasta -------------------------------------------------- d.16.b.F.tularensis.fasta -------------------------------------------------- d.16.b.B.parapertussis.fasta -------------------------------------------------- d.16.b.B.pertussis.fasta -------------------------------------------------- d.16.b.B.bronchiseptica2.fasta -------------------------------------------------- d.16.b.u.proteobacterium.fasta -------------------------------------------------- d.16.b.B.mallei.fasta -------------------------------------------------- d.16.b.Burkholderia.sp.fasta -------------------------------------------------- d.16.b.N.meningitidis.MD58.GEN -------------------------------------------------- d.16.b.N.meningitidis.Z2491.GE -------------------------------------------------- d.16.b.N.gonorrhoeae.fasta -------------------------------------------------- d.16.b.C.testosteroni.fasta -------------------------------------------------- d.16.b.D.desulfuricans.fasta -------------------------------------------------- d.16.b.M.xanthus.fasta -------------------------------------------------- d.16.b.D.thermophilus.fasta -------------------------------------------------- d.16.b.B.burgdorferi.fasta -------------------------------------------------- d.16.b.B.burgdorferi.GEN.fasta -------------------------------------------------- d.16.b.B.hermsii.fasta -------------------------------------------------- d.16.b.S.aurantia.fasta -------------------------------------------------- d.16.b.T.pallidum.A.fasta -------------------------------------------------- d.16.b.L.illini.fasta -------------------------------------------------- d.16.b.L.interrogans.fasta -------------------------------------------------- d.16.b.C.trachomatis.GEN.fasta -------------------------------------------------- d.16.b.C.trachomatis.L2.fasta -------------------------------------------------- d.16.b.C.muridarum.fasta -------------------------------------------------- d.16.b.C.pneumoniae.AR39.fasta -------------------------------------------------- d.16.b.C.pneumoniae.fasta -------------------------------------------------- d.16.b.C.pneumoniae.J138.fasta -------------------------------------------------- d.16.b.C.pneumoniae.CWL029.fas -------------------------------------------------- d.16.b.C.psittaci.fasta -------------------------------------------------- d.16.b.D.radiodurans.1.fasta -------------------------------------------------- d.16.b.D.radiodurans.GEN.fasta -------------------------------------------------- d.16.b.B.fragilis.fasta -------------------------------------------------- d.16.b.P.gingivalis.fasta -------------------------------------------------- d.16.b.C.vibrioforme.fasta -------------------------------------------------- d.16.b.C.jejuni.fasta -------------------------------------------------- d.16.b.C.jejuni.GEN.fasta -------------------------------------------------- d.16.b.C.sputorum.fasta -------------------------------------------------- d.16.b.H.pylori.26695.GEN.fast -------------------------------------------------- d.16.b.H.pylori.J99.GEN.fasta -------------------------------------------------- d.16.b.H.pylori2.fasta -------------------------------------------------- d.16.b.A.capsulatum.fasta -------------------------------------------------- d.16.b.H.foetida.fasta -------------------------------------------------- d.16.b.A.globiformis.fasta -------------------------------------------------- d.16.b.M.luteus.fasta -------------------------------------------------- d.16.b.Frankia.sp.fasta -------------------------------------------------- d.16.b.S.bottropensis.fasta -------------------------------------------------- d.16.b.S.scabiei.fasta -------------------------------------------------- d.16.b.S.neyagawaensis.fasta -------------------------------------------------- d.16.b.S.diastatochromogenes.f -------------------------------------------------- d.16.b.Streptomyces.sp.fasta -------------------------------------------------- d.16.b.S.acidiscabies.fasta -------------------------------------------------- d.16.b.S.griseus.fasta -------------------------------------------------- d.16.b.S.ornatus.fasta -------------------------------------------------- d.16.b.S.subrutilus.fasta -------------------------------------------------- d.16.b.S.bikiniensis.fasta -------------------------------------------------- d.16.b.S.galbus.fasta -------------------------------------------------- d.16.b.S.hygroscopicus.fasta -------------------------------------------------- d.16.b.S.lincolnensis.fasta -------------------------------------------------- d.16.b.S.coelicolor.fasta -------------------------------------------------- d.16.b.S.tendae.fasta -------------------------------------------------- d.16.b.S.ambofaciens.fasta -------------------------------------------------- d.16.b.S.eurythermus.fasta -------------------------------------------------- d.16.b.S.nodosus.fasta -------------------------------------------------- d.16.b.S.sampsonii.fasta -------------------------------------------------- d.16.b.S.glaucescens.fasta -------------------------------------------------- d.16.b.S.pseudogriseolus.fasta -------------------------------------------------- d.16.b.S.caelestis.fasta -------------------------------------------------- d.16.b.S.bluensis.fasta -------------------------------------------------- d.16.b.S.espinosus.fasta -------------------------------------------------- d.16.b.S.mashuensis.fasta -------------------------------------------------- d.16.b.S.rimosus.fasta -------------------------------------------------- d.16.b.S.limosus.fasta -------------------------------------------------- d.16.b.S.odorifer.fasta -------------------------------------------------- d.16.b.S.felleus.fasta -------------------------------------------------- d.16.b.S.albidoflavus.fasta -------------------------------------------------- d.16.b.S.gougerotii.fasta -------------------------------------------------- d.16.b.S.rutgersensis.fasta -------------------------------------------------- d.16.b.S.intermedius.fasta -------------------------------------------------- d.16.b.S.thermodiastaticus.fas -------------------------------------------------- d.16.b.S.thermoviolaceus.fasta -------------------------------------------------- d.16.b.S.thermovulgaris.1.fast -------------------------------------------------- d.16.b.S.thermovulgaris.2.fast -------------------------------------------------- d.16.b.S.macrosporus.fasta -------------------------------------------------- d.16.b.S.megasporus.fasta -------------------------------------------------- d.16.b.S.thermolineatus.fasta -------------------------------------------------- d.16.b.M.tuberculosis.2.fasta -------------------------------------------------- d.16.b.M.tuberculosis.3.fasta -------------------------------------------------- d.16.b.M.avium.fasta -------------------------------------------------- d.16.b.M.leprae.fasta -------------------------------------------------- d.16.b.M.leprae.GEN.fasta -------------------------------------------------- d.16.b.M.tuberculosis.CDC1551. -------------------------------------------------- d.16.b.M.tuberculosis.GEN.fast -------------------------------------------------- d.16.b.N.asteroides.fasta -------------------------------------------------- d.16.b.R.erythropolis.fasta -------------------------------------------------- d.16.b.C.diphtheriae.fasta -------------------------------------------------- d.16.b.A.israelii.fasta -------------------------------------------------- d.16.b.B.hyodysenteriae.fasta -------------------------------------------------- d.16.b.G.subterranea.fasta -------------------------------------------------- d.16.b.P.miotherma.fasta -------------------------------------------------- d.16.b.B.andersonii.fasta -------------------------------------------------- d.16.b.H.aurantiacus.fasta -------------------------------------------------- d.16.b.Leptospirillium.sp.fast -------------------------------------------------- d.16.b.A.aeolicus.fasta -------------------------------------------------- d.16.b.A.pyrophilus.fasta -------------------------------------------------- d.16.b.T.maritima.fasta -------------------------------------------------- d.16.b.T.maritima.GEN.fasta -------------------------------------------------- n.16.b.T.thermophilus.2.num.fa -------------------------------------------------- s.16.b.T.thermophilus.2.schem. -------------------------------------------------- d.16.b.T.thermophilus.2.fasta -------------------------------------------------- s.16.b.T.thermophilus.1.schem. -------------------------------------------------- n.16.b.T.thermophilus.1.num.fa -------------------------------------------------- d.16.b.T.thermophilus.1.fasta -------------------------------------------------- d.16.b.T.aquaticus.fasta -------------------------------------------------- d.16.b.T.roseum.fasta -------------------------------------------------- d.16.b.P.marina.fasta -------------------------------------------------- d.16.b.P.staleyi.fasta -------------------------------------------------- d.16.b.P.Schlesner.fasta -------------------------------------------------- d.16.b.G.obscuriglobus.1.fasta -------------------------------------------------- d.16.b.I.pallida.fasta -------------------------------------------------- d.16.a.P.abyssi.fasta -------------------------------------------------- d.16.a.P.horikoshii.fasta -------------------------------------------------- d.16.a.P.furiosus.fasta -------------------------------------------------- d.16.a.T.celer.fasta -------------------------------------------------- d.16.a.A.fulgidus.fasta -------------------------------------------------- d.16.a.N.equitans.fasta -------------------------------------------------- d.16.a.A.pernix.K1.fasta -------------------------------------------------- d.16.a.P.occultum.fasta -------------------------------------------------- d.16.a.T.tenax.fasta -------------------------------------------------- d.16.a.S.acidocaldarius.fasta -------------------------------------------------- d.16.a.S.solfataricus.fasta -------------------------------------------------- d.16.a.S.solfataricus.2.fasta -------------------------------------------------- d.16.a.M.thermautotrophicus.1. -------------------------------------------------- d.16.a.M.thermautotrophicus.2. -------------------------------------------------- d.16.a.M.formicicum.fasta -------------------------------------------------- d.16.a.M.vannielii.fasta -------------------------------------------------- d.16.a.H.marismortui.rrnA.fast -------------------------------------------------- d.16.a.H.marismortui.rrnB.fast -------------------------------------------------- d.16.a.Halobacterium.sp.fasta -------------------------------------------------- d.16.a.N.bangense.fasta -------------------------------------------------- d.16.a.N.innermongoliae.fasta -------------------------------------------------- d.16.a.H.volcanii.fasta -------------------------------------------------- d.16.a.M.hungatei.fasta -------------------------------------------------- d.16.a.P.torridus.fasta -------------------------------------------------- d.16.a.T.acidophilum.fasta -------------------------------------------------- a.16.e.G.ardeae.fasta -------------------------------------------------- d.16.e.G.intestinalis.fasta -------------------------------------------------- a.16.e.G.muris.fasta -------------------------------------------------- d.16.e.A.bracteata.fasta -------------------------------------------------- d.16.e.Glomus.sp.W3349.fasta -------------------------------------------------- d.16.e.S.cerradensis.fasta -------------------------------------------------- a.16.e.G.intraradices.fasta -------------------------------------------------- d.16.e.S.culisetae.fasta -------------------------------------------------- a.16.e.P.balamuthi.fasta -------------------------------------------------- d.16.e.A.flavus.fasta -------------------------------------------------- d.16.e.T.caries.fasta -------------------------------------------------- d.16.e.M.circinelloides.fasta -------------------------------------------------- d.16.e.M.racemosus.fasta -------------------------------------------------- d.16.e.R.oryzae.fasta -------------------------------------------------- a.16.e.M.edulis.fasta -------------------------------------------------- a.16.e.P.magellanicus.fasta -------------------------------------------------- b.16.e.E.granulosus.fasta -------------------------------------------------- d.16.e.D.melanogaster.fasta -------------------------------------------------- b.16.e.C.koreana.fasta -------------------------------------------------- b.16.e.A.australis.fasta -------------------------------------------------- b.16.e.O.utahensis.fasta -------------------------------------------------- b.16.e.A.salina.fasta -------------------------------------------------- d.16.e.M.musculus.fasta -------------------------------------------------- d.16.e.R.norvegicus.fasta -------------------------------------------------- d.16.e.H.sapiens.fasta -------------------------------------------------- d.16.e.O.cuniculus.fasta -------------------------------------------------- d.16.e.X.borealis.fasta -------------------------------------------------- d.16.e.X.laevis.fasta -------------------------------------------------- d.16.e.A.castellanii.fasta UCCUUGGCGUC----------------------------GGUCCUUCACG d.16.e.B.mandrillaris.fasta -------------------------------------------------- d.16.e.P.falciparum.A.fasta -------------------------------------------------- d.16.e.P.falciparum.S.fasta G------------------------------------------------- d.16.e.P.vivax.A.fasta -------------------------------------------------- d.16.e.P.vivax.O.fasta -------------------------------------------------- d.16.e.P.vivax.S.fasta -------------------------------------------------- d.16.e.E.histolytica.fasta AGC----------------------------------------------- d.16.e.I.hoferi.fasta -------------------------------------------------- d.16.e.Dermocystidium.sp.fasta -------------------------------------------------- d.16.e.S.destruens.fasta -------------------------------------------------- d.16.e.A.unguiculata.fasta -------------------------------------------------- d.16.e.D.grandis.fasta -------------------------------------------------- d.16.e.A.macrogynus.fasta -------------------------------------------------- d.16.e.B.emersonii.fasta -------------------------------------------------- d.16.e.C.albicans.fasta -----------------------------------------------UUG d.16.e.S.cerevisiae.fasta -----------------------------------------------GUG d.16.e.N.crassa.fasta -----------------------------------------------ACG d.16.e.P.anserina.fasta -----------------------------------------------ACG d.16.e.C.immitis.fasta -----------------------------------------------ACG d.16.e.L.major.fasta CCUGUGUCAGCACCGCGCCCGCUUUUACCAAC-------------UUACG d.16.e.T.cruzi.fasta UAUUUUUCAUC-CCGUUCCUCGUCUCGCCAAUGAAUAUAUUAAAUUUACG d.16.e.T.brucei.fasta --UGUGCCGACCCUCGGCCCCAAUUUAUUUAUCAA---------UUUACG d.16.e.P.carinii.fasta -----------------------------------------------GCG d.16.e.C.neoformans.fasta -------------------------------------------------- d.16.e.Fungus.sp.QPX.fasta -------------------------------------------------- d.16.e.U.maydis.fasta -------------------------------------------------- d.16.e.M.leidyi.fasta -------------------------------------------------- d.16.e.T.cystophora.fasta -------------------------------------------------- d.16.e.M.prolifera.fasta -------------------------------------------------- d.16.e.P.haeckeli.fasta -------------------------------------------------- d.16.e.E.rotunda.fasta -------------------------------------------------- d.16.e.P.chromatophora.fasta -------------------------------------------------- d.16.e.A.majus.fasta -------------------------------------------------- d.16.e.S.indicum.fasta -------------------------------------------------- d.16.e.D.grandiflora.fasta -------------------------------------------------- d.16.e.Pla.lanceolata.fasta -------------------------------------------------- d.16.e.N.tabacum.fasta -------------------------------------------------- d.16.e.A.thaliana.fasta -------------------------------------------------- d.16.e.S.alba.fasta -------------------------------------------------- d.16.e.S.tuberosum.fasta -------------------------------------------------- d.16.e.F.x.ananassa.fasta -------------------------------------------------- d.16.e.G.max.fasta -------------------------------------------------- d.16.e.O.sativa.fasta -------------------------------------------------- d.16.e.Z.mays.fasta -------------------------------------------------- d.16.e.A.verticilliflorum.fast -------------------------------------------------- d.16.e.G.spirotaenia.fasta -------------------------------------------------- d.16.e.Staurastrum.sp.M752.fas -------------------------------------------------- d.16.e.C.paradoxa.fasta -------------------------------------------------- d.16.e.G.nostochinearum.fasta -------------------------------------------------- d.16.e.G.wittrockiana.fasta -------------------------------------------------- d.16.e.C.luteoviridis.fasta -------------------------------------------------- d.16.e.O.longa.fasta -------------------------------------------------- d.16.e.P.weissei.fasta -------------------------------------------------- d.16.e.C.citrina.fasta -------------------------------------------------- d.16.e.G.steinii.fasta -------------------------------------------------- d.16.e.Ple.lanceolata.fasta -------------------------------------------------- d.16.e.O.quadricornutus.fasta -------------------------------------------------- d.16.e.S.lemnae.fasta -------------------------------------------------- d.16.e.S.mytilus.fasta -------------------------------------------------- d.16.e.E.mobilis.fasta -------------------------------------------------- d.16.e.O.granulifera.1.fasta -------------------------------------------------- d.16.e.O.granulifera.2.fasta -------------------------------------------------- d.16.e.U.gallina.fasta -------------------------------------------------- d.16.e.U.pisces.fasta -------------------------------------------------- d.16.e.P.lepisma.fasta -------------------------------------------------- d.16.e.U.grandis.fasta -------------------------------------------------- d.16.e.B.coli.fasta -------------------------------------------------- d.16.e.E.aediculatus.fasta -------------------------------------------------- d.16.e.T.thermophila.fasta -------------------------------------------------- d.16.e.Bangia.sp.NWT.fasta -------------------------------------------------- d.16.e.Bangia.sp.VIS7.fasta -------------------------------------------------- d.16.e.E.carnea.fasta -------------------------------------------------- d.16.e.R.parvula.fasta -------------------------------------------------- d.16.e.C.coeruleus.fasta -------------------------------------------------- d.16.e.P.aerugineum.1.fasta -------------------------------------------------- d.16.e.R.maculata.fasta -------------------------------------------------- d.16.e.A.ambigua.fasta -------------------------------------------------- d.16.e.A.baicalensis.fasta -------------------------------------------------- d.16.e.S.nipponica.fasta -------------------------------------------------- d.16.e.C.radiatus.fasta -------------------------------------------------- d.16.e.C.criophilum.fasta -------------------------------------------------- d.16.e.A.capitellata.fasta -------------------------------------------------- d.16.e.S.pupula.fasta -------------------------------------------------- d.16.e.T.antarctica.fasta -------------------------------------------------- d.16.e.E.triangulatum.fasta -------------------------------------------------- d.16.e.A.bongranii.fasta -------------------------------------------------- d.16.e.Pseudogomphonema.sp.fas -------------------------------------------------- d.16.e.D.tenue.fasta -------------------------------------------------- d.16.e.G.marina.fasta -------------------------------------------------- d.16.e.Thalassionema.sp.fasta -------------------------------------------------- d.16.e.R.belgicae.fasta -------------------------------------------------- d.16.e.Undatella.sp.fasta -------------------------------------------------- d.16.e.C.belgica.fasta -------------------------------------------------- d.16.e.O.sinensis.fasta -------------------------------------------------- d.16.e.D.brightwellii.fasta -------------------------------------------------- d.16.e.L.undulatum.fasta -------------------------------------------------- d.16.e.T.eccentrica.fasta -------------------------------------------------- d.16.e.T.pseudonana.fasta -------------------------------------------------- d.16.e.S.costatum.fasta -------------------------------------------------- d.16.e.P.laevis.fasta -------------------------------------------------- d.16.e.L.borealis.fasta -------------------------------------------------- d.16.e.P.pseudodenticulata.fas -------------------------------------------------- d.16.e.B.mediterranea.fasta -------------------------------------------------- d.16.e.B.pacifica.fasta -------------------------------------------------- d.16.e.L.minuta.fasta -------------------------------------------------- d.16.e.L.danicus.fasta -------------------------------------------------- d.16.e.Chaetoceros.sp.fasta -------------------------------------------------- d.16.e.A.invadans.fasta -------------------------------------------------- d.16.e.L.giganteum.fasta -------------------------------------------------- d.16.e.M.varians.fasta -------------------------------------------------- d.16.e.B.hominis.fasta -------------------------------------------------- d.16.e.P.marinus.fasta -------------------------------------------------- d.16.e.T.gondii.fasta -------------------------------------------------- d.16.e.A.fundyense.fasta -------------------------------------------------- d.16.e.B.bigemina.fasta -------------------------------------------------- d.16.e.B.canis.fasta -------------------------------------------------- d.16.e.Babesia.sp.OKD.fasta -------------------------------------------------- d.16.e.B.microti.1.fasta -------------------------------------------------- d.16.e.B.microti.2.fasta -------------------------------------------------- d.16.e.B.microti.3.fasta -------------------------------------------------- d.16.e.B.microti.4.fasta -------------------------------------------------- d.16.e.B.microti.5.fasta -------------------------------------------------- d.16.e.B.rodhaini.fasta -------------------------------------------------- d.16.e.B.gibsoni.fasta -------------------------------------------------- d.16.e.B.bovis.fasta -------------------------------------------------- d.16.e.J.libera.fasta -------------------------------------------------- d.16.e.R.americana.fasta -------------------------------------------------- d.16.e.B.ostreae.fasta -------------------------------------------------- d.16.e.A.dasyae.fasta -------------------------------------------------- d.16.e.A.hermannii.fasta -------------------------------------------------- d.16.e.N.helminthoides.fasta -------------------------------------------------- d.16.e.B.gelatinosum.fasta -------------------------------------------------- d.16.e.N.tortuosa.fasta -------------------------------------------------- d.16.e.T.hispida.fasta -------------------------------------------------- d.16.e.T.violacea.4.fasta -------------------------------------------------- d.16.e.T.violacea.1.fasta -------------------------------------------------- d.16.e.T.violacea.2.fasta -------------------------------------------------- d.16.e.N.shawii.fasta -------------------------------------------------- d.16.e.B.investiens.fasta -------------------------------------------------- d.16.e.B.macrosporum.fasta -------------------------------------------------- d.16.e.A.plicata.fasta -------------------------------------------------- d.16.e.C.officinalis.fasta -------------------------------------------------- d.16.e.R.carriebowensis.fasta -------------------------------------------------- d.16.e.B.hamifera.fasta -------------------------------------------------- d.16.e.G.vagum.fasta -------------------------------------------------- d.16.e.C.crispus.fasta -------------------------------------------------- d.16.e.H.plana.fasta -------------------------------------------------- d.16.e.R.leptophylla.fasta -------------------------------------------------- d.16.e.P.pulvinata.fasta -------------------------------------------------- d.16.e.C.rubrum.fasta -------------------------------------------------- d.16.e.Gracilariopsis.sp.fasta -------------------------------------------------- d.16.e.B.moritziana.fasta -------------------------------------------------- d.16.e.H.rubra.fasta -------------------------------------------------- d.16.e.D.grisea.fasta -------------------------------------------------- d.16.e.N.fowleri.fasta -------------------------------------------------- d.16.e.N.gruberi.fasta -------------------------------------------------- a.16.e.Hexamita.sp.fasta -------------------------------------------------- d.16.e.T.foetus.fasta -------------------------------------------------- d.16.e.A.khaliulini.fasta -------------------------------------------------- d.16.e.E.aedis.fasta -------------------------------------------------- d.16.e.A.connecticus.fasta -------------------------------------------------- d.16.e.I.barri.fasta -------------------------------------------------- d.16.e.A.ferocious.fasta -------------------------------------------------- d.16.e.Amblyospora.sp.fasta -------------------------------------------------- d.16.e.C.lunata.fasta -------------------------------------------------- d.16.e.P.anophelis.fasta -------------------------------------------------- d.16.e.Hazardia.sp.fasta -------------------------------------------------- d.16.e.H.milleri.fasta -------------------------------------------------- d.16.e.P.simulii.fasta -------------------------------------------------- d.16.e.W.palustris.fasta -------------------------------------------------- d.16.e.Nosema.sp.03.fasta -------------------------------------------------- d.16.e.Nosema.sp.05.fasta -------------------------------------------------- d.16.e.Endoreticulatus.sp.fast -------------------------------------------------- d.16.e.Nosema.sp.02.fasta -------------------------------------------------- d.16.e.N.spodopterae.fasta -------------------------------------------------- d.16.e.N.trichoplusiae.fasta -------------------------------------------------- d.16.e.N.bombycis.27.fasta -------------------------------------------------- d.16.e.N.bombycis.02.fasta -------------------------------------------------- d.16.e.V.imperfecta.fasta -------------------------------------------------- d.16.e.N.furnacalis.fasta -------------------------------------------------- d.16.e.Microsporidium57864.fas -------------------------------------------------- d.16.e.Vairimorpha.sp.C21.fast -------------------------------------------------- d.16.e.N.oulemae.fasta -------------------------------------------------- d.16.e.N.necatrix.fasta -------------------------------------------------- d.16.e.V.necatrix.fasta -------------------------------------------------- d.16.e.N.apis.fasta -------------------------------------------------- d.16.e.O.occidentalis.fasta -------------------------------------------------- d.16.e.Microsporidium.sp.DP119 -------------------------------------------------- d.16.e.V.corneae.fasta -------------------------------------------------- d.16.e.A.michaelis.fasta -------------------------------------------------- d.16.e.T.contejeani.fasta -------------------------------------------------- d.16.e.E.hellem.fasta -------------------------------------------------- d.16.e.Encephalitozoon.sp.fast -------------------------------------------------- d.16.e.E.cuniculi.fasta -------------------------------------------------- d.16.e.O.colligata.fasta -------------------------------------------------- d.16.e.E.salmonis.fasta -------------------------------------------------- d.16.e.N.salmonis.fasta -------------------------------------------------- d.16.e.Enterocytozoonidae.sp.f -------------------------------------------------- d.16.e.E.bieneusi.fasta -------------------------------------------------- d.16.e.B.algerae.fasta -------------------------------------------------- d.16.e.T.solenopsae.fasta -------------------------------------------------- d.16.e.V.acridophagus.fasta -------------------------------------------------- d.16.e.Bacillidium.sp.fasta -------------------------------------------------- d.16.e.P.cristatellae.fasta -------------------------------------------------- d.16.e.Pleistophora.sp.fasta -------------------------------------------------- d.16.e.O.operophterae.fasta -------------------------------------------------- d.16.e.F.magnivora.fasta -------------------------------------------------- d.16.e.G.atherinae.fasta -------------------------------------------------- d.16.e.Ichthyosporidium.sp.fas -------------------------------------------------- d.16.e.L.acerinae.fasta -------------------------------------------------- d.16.e.H.anguillarum.fasta -------------------------------------------------- d.16.e.P.mirandellae.fasta -------------------------------------------------- d.16.e.T.hominis.fasta -------------------------------------------------- d.16.e.V.culicis.fasta -------------------------------------------------- d.16.e.P.hippoglossoideos.fast -------------------------------------------------- d.16.e.Microgemma.sp.fasta -------------------------------------------------- d.16.e.S.lophii.fasta -------------------------------------------------- d.16.e.Pleistophora.sp.LS.fast -------------------------------------------------- d.16.e.D.gammarellum.fasta -------------------------------------------------- d.16.e.M.prosopium.fasta -------------------------------------------------- d.16.e.A.scoticae.fasta -------------------------------------------------- d.16.e.P.whitei.fasta -------------------------------------------------- a.16.c.C.coccineum.fasta -----------------------------------------UCGA--CCC a.16.c.C.ruber.fasta -----------------------------------------UCGA--UCC d.16.c.N.tabacum.fasta -----------------------------------------UCGA--CCC d.16.c.S.oleracea.fasta -----------------------------------------UCGA--CCC d.16.c.Z.mays.fasta -----------------------------------------UCGA--CCC d.16.c.M.polymorpha.fasta -----------------------------------------UCGA--CCC d.16.c.R.communis.fasta -----------------------------------------UCGA--CCC d.16.c.C.vulgaris.fasta -----------------------------------------UUAA-AU-C d.16.c.P.wickerhamii.fasta -----------------------------------------UCAA-AAAC d.16.c.P.minor.fasta -----------------------------------------CGAGUAAUC d.16.c.N.olivacea.fasta -----------------------------------------UACC--AUC d.16.c.P.parkeae.fasta -----------------------------------------UUUA--UGC d.16.c.C.reinhardtii.fasta ------------------------------------------CAA----- b.16.m.A.castellanii.fasta ------------------------------------------GGUGU--- d.16.c.P.thurberi.fasta ------------------------------------------AGAAG--- b.16.m.C.crispus.fasta ------------------------------------------CAGAA--- d.16.c.T.gondii.fasta ------------------------------------------UUAAAUAU b.16.m.N.crassa.fasta -----------------------------------------------UUU b.16.m.P.anserina.fasta --------------------------------------CGUAUUAAAUUU b.16.m.P.chrysogenum.fasta -------------------------------------------------U b.16.m.E.nidulans.fasta --------------------------------------CGUUUAGACUAU b.16.m.S.cerevisiae.fasta -----------------------------------------AAUAUAUAU b.16.m.W.saturnus.m.fasta -----------------------------------------AAUAUUUAU b.16.m.P.minor.fasta -----------------------------------------AAUAUCCUU d.16.c.P.falciparum.fasta ------------------------------------------AUAUUUAU d.16.c.B.bovis.fasta ------------------------------------------AGAAAUAA b.16.m.T.pyriformis.fasta -------------------------------------------UGAAUUA d.16.m.S.sinuspaulianus.fasta --------------------------------------UAAGAUAAAAUA b.16.m.P.tetraurelia.fasta -------------------------------------------------- b.16.m.D.discoideum.fasta --------------------------------------------GUUCAA d.16.m.P.polycephalum.fasta ------------------------------------------UUUAAUAU b.16.m.P.littoralis.fasta ------------------------------------------------CU b.16.m.P.wickerhamii.fasta ------------------------------------------UCUAUUUU d.16.c.H.africana.fasta -----------------------------------------AUAUGAAAA d.16.c.C.fragile.fasta ------------------------------------------GGGCUUUU d.16.c.C.sertularioides.fasta ------------------------------------------GGUUUUUU d.16.c.C.humicola.fasta ------------------------------------------AAGUGGGG d.16.c.P.uvella.fasta ------------------------------------------AAGUAGGG a.16.c.G.nostochinearum.fasta ------------------------------------------ACGUAUCG a.16.c.G.wittrockiana.fasta ------------------------------------------ACGUAUUG d.16.c.C.paradoxa.fasta ------------------------------------------GCGUAUCG d.16.y.C.paradoxa.fasta ------------------------------------------GCGUAUCG d.16.c.Cryptomonas.sp.fasta ------------------------------------------ACGUAUUA d.16.c.P.palmata.fasta ------------------------------------------GCGUAUCG d.16.c.H.akashiwo.fasta ------------------------------------------AUGUAUCG d.16.c.S.pseudocostatum.fasta ------------------------------------------ACAGAUCG d.16.c.P.littoralis.fasta ------------------------------------------GUGUAUCG d.16.c.C.caldarium.fasta ------------------------------------------GUGAGUAA a.16.c.E.huxleyi.fasta ------------------------------------------G-----CA d.16.c.E.gracilis.fasta ------------------------------------------------UG d.16.b.Anabaena.sp.fasta ------------------------------------------UUGUAUCG d.16.b.Chlorogloeopsis.PCC7518 ------------------------------------------GUGUAUCG d.16.b.Synechococcus.sp.fasta ------------------------------------------GUGAAUCG d.16.b.Synechocystis.PCC6803.G ------------------------------------------UUGUAUCG d.16.b.O.agardhii.fasta ------------------------------------------CUGUAUCG d.16.b.Pleurocapsa.7516.fasta ------------------------------------------UUGUAUCG d.16.b.M.aeruginosa.fasta ------------------------------------------UUGUAUCG b.16.m.C.reinhardtii.fasta -------------------------------------------UAGUUUU d.16.m.C.eugametos.fasta -------------------------------------------CCAUUUU b.16.m.M.senile.fasta -------------------------------------------UGCUUAG d.16.b.S.pneumoniae.fasta ------------------------------------------ACCCUUUC d.16.b.S.pyogenes.fasta ------------------------------------------GCCCUNUC d.16.b.B.anthracis.fasta ------------------------------------------AGGGUUUC d.16.b.B.cereus.1.fasta ------------------------------------------AGGGUUUC d.16.b.E.faecalis.fasta ------------------------------------------AGGGUUUC d.16.b.E.faecium2.fasta ------------------------------------------AGGGUUUC d.16.b.L.monocytogenes.fasta ------------------------------------------GGGGUUUC d.16.b.B.subtilis.fasta ------------------------------------------GGGGUUUC d.16.b.B.subtilis.GEN.fasta ------------------------------------------GGGGUUUC d.16.b.B.halodurans.fasta ------------------------------------------GGGUUUCG d.16.b.S.aureus.fasta ------------------------------------------GGGGUUUC d.16.b.S.aureus.GEN.fasta ------------------------------------------GGGGUUUC d.16.b.L.lactis.GEN.fasta ------------------------------------------GAGCUAUA d.16.b.S.pyogenes.GEN.fasta ------------------------------------------GCCCUUUC d.16.b.L.acidophilus.fasta ------------------------------------------GAGGUUUC d.16.b.M.capricolum.fasta ------------------------------------------GGUAACUC d.16.b.M.mycoides.fasta ------------------------------------------GGUAACUC d.16.b.E.rhusiopathiae.fasta ------------------------------------------AGAAAUUC d.16.b.C.innocuum.fasta ------------------------------------------AGAAAUUC d.16.b.M.genitalium.fasta ------------------------------------------AGCGAUCC d.16.b.M.pneumoniae.GEN.fasta ------------------------------------------GGCGAUCC d.16.b.M.pneumoniae.fasta ------------------------------------------GGCGAUCC d.16.b.M.gallisepticum.fasta ------------------------------------------AGCGAAUA d.16.b.U.urealyticum.fasta ------------------------------------------CCUGAAUG d.16.b.U.urealyticum.GEN.fasta ------------------------------------------CCCGAAUG d.16.b.M.hyopneumoniae.fasta ------------------------------------------CAAAA--- d.16.b.F.necrophorum.fasta ------------------------------------------GG-GUCAA d.16.b.F.nucleatum.fasta ------------------------------------------GG-GUCGA d.16.b.S.moniliformis.fasta ------------------------------------------GGUGUGAA d.16.b.C.botulinum.F.fasta ------------------------------------------GGGUAUCA d.16.b.C.tetani.fasta ------------------------------------------AGGGUCCA d.16.b.C.perfringens.fasta ------------------------------------------GGGUUUCA d.16.b.C.difficile.fasta ------------------------------------------GGGGUUAC d.16.b.E.brachy.fasta ------------------------------------------GGGUCGUA d.16.b.Epulopiscium.sp.fasta ------------------------------------------GGGCUUAC d.16.b.H.chlorum.fasta ------------------------------------------GGGUAUCG b.16.m.G.max.fasta -------------------------------------------------- b.16.m.O.berteriana.fasta -------------------------------------------------- b.16.m.S.cereale.fasta -------------------------------------------------- b.16.m.T.aestivum.fasta -------------------------------------------------- d.16.m.Z.mays.fasta -------------------------------------------------- b.16.m.M.polymorpha.fasta -----------UGUGACUCGAUUGUUUUCUUCAAGUUCCAACAAUCGUGA b.16.m.N.olivacea.fasta -------------------------------------------------- d.16.b.G.liquefaciens.fasta -------------------------------------------------- d.16.b.B.japonicum.fasta -------------------------------------------------- d.16.b.R.acidophilus.fasta -------------------------------------------------- d.16.b.A.caulinodans.fasta -------------------------------------------------- d.16.b.B.quintana.fasta -------------------------------------------------- d.16.b.M.loti.fasta -------------------------------------------------- d.16.b.A.tumefaciens.fasta -------------------------------------------------- d.16.b.B.bacilliformis.fasta -------------------------------------------------- d.16.b.B.henselae.fasta -------------------------------------------------- d.16.b.B.melitensis.fasta -------------------------------------------------- d.16.b.R.orientis.fasta -------------------------------------------------- d.16.b.Methylobacterium.sp.fas -------------------------------------------------- d.16.b.R.bellii.fasta -------------------------------------------------- d.16.b.R.felis.URRWXCal2.fasta -------------------------------------------------- d.16.b.R.prowazekii.fasta -------------------------------------------------- d.16.b.R.prowazekii.GEN.fasta -------------------------------------------------- d.16.b.R.rickettsii.fasta -------------------------------------------------- d.16.b.A.calcoaceticus.fasta -------------------------------------------------- d.16.b.P.pacificensis.fasta -------------------------------------------------- d.16.b.C.marismortui.fasta -------------------------------------------------- d.16.b.H.halodenitrificans.fas -------------------------------------------------- d.16.b.P.aeruginosa.fasta -------------------------------------------------- d.16.b.P.aeruginosa.GEN.fasta -------------------------------------------------- d.16.b.Pseudomonas.sp.fasta -------------------------------------------------- d.16.b.P.putida.fasta -------------------------------------------------- d.16.b.C.burnetii.fasta -------------------------------------------------- d.16.b.M.capsulatus.fasta -------------------------------------------------- d.16.b.L.pneumophila.1.fasta -------------------------------------------------- d.16.b.L.pneumophila.2.fasta -------------------------------------------------- d.16.b.A.vinosum.fasta -------------------------------------------------- d.16.b.Beggiatoa.sp.fasta -------------------------------------------------- d.16.b.A.hydrophila.fasta -------------------------------------------------- d.16.b.S.putrefaciens.fasta -------------------------------------------------- d.16.b.C.freundii.fasta -------------------------------------------------- d.16.b.S.dysenteriae.1.fasta -------------------------------------------------- d.16.b.K.pneumoniae.fasta -------------------------------------------------- d.16.b.P.shigelloides.fasta -------------------------------------------------- d.16.b.Y.pestis.fasta -------------------------------------------------- d.16.b.Y.pseudotuberculosis.fa -------------------------------------------------- d.16.b.S.dysenteriae.2.fasta -------------------------------------------------- d.16.b.E.coli.0157G.GEN.fasta -------------------------------------------------- d.16.b.E.coli.EDL.GEN.fasta -------------------------------------------------- d.16.b.E.coli.fasta -------------------------------------------------- d.16.b.E.coli.K12.GEN.fasta -------------------------------------------------- h.16.b.E.coli.hlxnum.fasta -------------------------------------------------- m.16.b.E.coli.mhg.fasta -------------------------------------------------- s.16.b.E.coli.schem.fasta -------------------------------------------------- d.16.b.S.typhimurium.fasta -------------------------------------------------- d.16.b.S.marcescens.fasta -------------------------------------------------- d.16.b.E.tarda.fasta -------------------------------------------------- d.16.b.P.vulgaris.fasta -------------------------------------------------- d.16.b.V.cholerae4.fasta -------------------------------------------------- d.16.b.V.cholerae5.fasta -------------------------------------------------- d.16.b.V.cholerae2.fasta -------------------------------------------------- d.16.b.V.cholerae6.fasta -------------------------------------------------- d.16.b.V.cholerae.fasta -------------------------------------------------- d.16.b.V.cholerae.GEN.fasta -------------------------------------------------- d.16.b.V.parahaemolyticus.fast -------------------------------------------------- d.16.b.H.influenzae7.fasta -------------------------------------------------- d.16.b.H.influenzae8.fasta -------------------------------------------------- d.16.b.H.influenzae6.fasta -------------------------------------------------- d.16.b.H.influenz.fasta -------------------------------------------------- d.16.b.H.influenzae.fasta -------------------------------------------------- d.16.b.P.multocida.fasta -------------------------------------------------- d.16.b.P.multocida.GEN.fasta -------------------------------------------------- d.16.b.X.albilineans.fasta -------------------------------------------------- d.16.b.X.campestris.fasta -------------------------------------------------- d.16.b.X.fastidiosa.GEN.fasta -------------------------------------------------- d.16.b.D.nodosus.fasta -------------------------------------------------- d.16.b.F.tularensis.fasta -------------------------------------------------- d.16.b.B.parapertussis.fasta -------------------------------------------------- d.16.b.B.pertussis.fasta -------------------------------------------------- d.16.b.B.bronchiseptica2.fasta -------------------------------------------------- d.16.b.u.proteobacterium.fasta -------------------------------------------------- d.16.b.B.mallei.fasta -------------------------------------------------- d.16.b.Burkholderia.sp.fasta -------------------------------------------------- d.16.b.N.meningitidis.MD58.GEN -------------------------------------------------- d.16.b.N.meningitidis.Z2491.GE -------------------------------------------------- d.16.b.N.gonorrhoeae.fasta -------------------------------------------------- d.16.b.C.testosteroni.fasta -------------------------------------------------- d.16.b.D.desulfuricans.fasta -------------------------------------------------- d.16.b.M.xanthus.fasta -------------------------------------------------- d.16.b.D.thermophilus.fasta -------------------------------------------------- d.16.b.B.burgdorferi.fasta -------------------------------------------------- d.16.b.B.burgdorferi.GEN.fasta -------------------------------------------------- d.16.b.B.hermsii.fasta -------------------------------------------------- d.16.b.S.aurantia.fasta -------------------------------------------------- d.16.b.T.pallidum.A.fasta -------------------------------------------------- d.16.b.L.illini.fasta -------------------------------------------------- d.16.b.L.interrogans.fasta -------------------------------------------------- d.16.b.C.trachomatis.GEN.fasta -------------------------------------------------- d.16.b.C.trachomatis.L2.fasta -------------------------------------------------- d.16.b.C.muridarum.fasta -------------------------------------------------- d.16.b.C.pneumoniae.AR39.fasta -------------------------------------------------- d.16.b.C.pneumoniae.fasta -------------------------------------------------- d.16.b.C.pneumoniae.J138.fasta -------------------------------------------------- d.16.b.C.pneumoniae.CWL029.fas -------------------------------------------------- d.16.b.C.psittaci.fasta -------------------------------------------------- d.16.b.D.radiodurans.1.fasta -------------------------------------------------- d.16.b.D.radiodurans.GEN.fasta -------------------------------------------------- d.16.b.B.fragilis.fasta -------------------------------------------------- d.16.b.P.gingivalis.fasta -------------------------------------------------- d.16.b.C.vibrioforme.fasta -------------------------------------------------- d.16.b.C.jejuni.fasta -------------------------------------------------- d.16.b.C.jejuni.GEN.fasta -------------------------------------------------- d.16.b.C.sputorum.fasta -------------------------------------------------- d.16.b.H.pylori.26695.GEN.fast -------------------------------------------------- d.16.b.H.pylori.J99.GEN.fasta -------------------------------------------------- d.16.b.H.pylori2.fasta -------------------------------------------------- d.16.b.A.capsulatum.fasta -------------------------------------------------- d.16.b.H.foetida.fasta -------------------------------------------------- d.16.b.A.globiformis.fasta -------------------------------------------------- d.16.b.M.luteus.fasta -------------------------------------------------- d.16.b.Frankia.sp.fasta -------------------------------------------------- d.16.b.S.bottropensis.fasta -------------------------------------------------- d.16.b.S.scabiei.fasta -------------------------------------------------- d.16.b.S.neyagawaensis.fasta -------------------------------------------------- d.16.b.S.diastatochromogenes.f -------------------------------------------------- d.16.b.Streptomyces.sp.fasta -------------------------------------------------- d.16.b.S.acidiscabies.fasta -------------------------------------------------- d.16.b.S.griseus.fasta -------------------------------------------------- d.16.b.S.ornatus.fasta -------------------------------------------------- d.16.b.S.subrutilus.fasta -------------------------------------------------- d.16.b.S.bikiniensis.fasta -------------------------------------------------- d.16.b.S.galbus.fasta -------------------------------------------------- d.16.b.S.hygroscopicus.fasta -------------------------------------------------- d.16.b.S.lincolnensis.fasta -------------------------------------------------- d.16.b.S.coelicolor.fasta -------------------------------------------------- d.16.b.S.tendae.fasta -------------------------------------------------- d.16.b.S.ambofaciens.fasta -------------------------------------------------- d.16.b.S.eurythermus.fasta -------------------------------------------------- d.16.b.S.nodosus.fasta -------------------------------------------------- d.16.b.S.sampsonii.fasta -------------------------------------------------- d.16.b.S.glaucescens.fasta -------------------------------------------------- d.16.b.S.pseudogriseolus.fasta -------------------------------------------------- d.16.b.S.caelestis.fasta -------------------------------------------------- d.16.b.S.bluensis.fasta -------------------------------------------------- d.16.b.S.espinosus.fasta -------------------------------------------------- d.16.b.S.mashuensis.fasta -------------------------------------------------- d.16.b.S.rimosus.fasta -------------------------------------------------- d.16.b.S.limosus.fasta -------------------------------------------------- d.16.b.S.odorifer.fasta -------------------------------------------------- d.16.b.S.felleus.fasta -----------