Cynomorium_coccineum -------------------------------------------------- Cytinus_ruber -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Spinacia_oleracea -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Ricinus_communis -------------------------------------------------- F -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Pyramimonas_parkeae -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Pilostyles_thurberi -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Penicillium_chrysogenum -------------------------------------------------- Emericella_nidulans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Williopsis_saturnus_var._mrakii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Babesia_bovis -------------------------------------------------- Tetrahymena_pyriformis -------------------------------------------------- Suillus_sinuspaulianus -------------------------------------------------- Paramecium_tetraurelia -------------------------------------------------- Dictyostelium_discoideum -------------------------------------------------- Physarum_polycephalum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Hydnora_africana -------------------------------------------------- Codium_fragile -------------------------------------------------- Caulerpa_sertularioides -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cryptomonas_sp. -------------------------------------------------- Palmaria_palmata -------------------------------------------------- Heterosigma_akashiwo -------------------------------------------------- Skeletonema_pseudocostatum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Cyanidium_caldarium -------------------------------------------------- Emiliania_huxleyi -------------------------------------------------- Euglena_gracilis -------------------------------------------------- Anabaena_sp. -------------------------------------------------- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -------------------------------------------------- F -------------------------------------------------- Oscillatoria_agardhii -------------------------------------------------- Pleurocapsa_sp. -------------------------------------------------- Microcystis_aeruginosa -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos -------------------------------------------------- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Bacillus_anthracis -------------------------------------------------- Bacillus_cereus -------------------------------------------------- Enterococcus_faecalis -------------------------------------------------- Enterococcus_faecium -------------------------------------------------- Listeria_monocytogenes -------------------------------------------------- Bacillus_subtilis -------------------------------------------------- Bacillus_subtilis_A -------------------------------------------------- Bacillus_halodurans -------------------------------------------------- Staphylococcus_aureus -------------------------------------------------- Staphylococcus_aureus_N315 -------------------------------------------------- Lactococcus_lactis_subsp._lactis -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Lactobacillus_acidophilus -------------------------------------------------- Mycoplasma_capricolum -------------------------------------------------- Mycoplasma_mycoides -------------------------------------------------- Erysipelothrix_rhusiopathiae_(alpha-P15) -------------------------------------------------- Clostridium_innocuum -------------------------------------------------- Mycoplasma_genitalium -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_gallisepticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Mycoplasma_hyopneumoniae -------------------------------------------------- Fusobacterium_necrophorum -------------------------------------------------- Fusobacterium_nucleatum_subsp._nucleatum -------------------------------------------------- Streptobacillus_moniliformis -------------------------------------------------- Clostridium_botulinum_type_f -------------------------------------------------- Clostridium_tetani -------------------------------------------------- Clostridium_perfringens -------------------------------------------------- Clostridium_difficile -------------------------------------------------- Eubacterium_brachy -------------------------------------------------- Epulopiscium_sp. -------------------------------------------------- Heliobacterium_chlorum -------------------------------------------------- Glycine_max -------------------------------------------------- Oenothera_berteroana -------------------------------------------------- Secale_cereale -------------------------------------------------- Triticum_aestivum -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Gluconacetobacter_liquefaciens -------------------------------------------------- Bradyrhizobium_japonicum -------------------------------------------------- Rhodoblastus_acidophilus -------------------------------------------------- Azorhizobium_caulinodans -------------------------------------------------- Bartonella_quintana -------------------------------------------------- Mesorhizobium_loti -------------------------------------------------- Agrobacterium_tumefaciens -------------------------------------------------- Bartonella_bacilliformis -------------------------------------------------- Bartonella_henselae -------------------------------------------------- Brucella_melitensis -------------------------------------------------- Rhodobium_orientis -------------------------------------------------- F -------------------------------------------------- Rickettsia_bellii -------------------------------------------------- Rickettsia_felis_URRWXCal2 -------------------------------------------------- Rickettsia_prowazekii -------------------------------------------------- Rickettsia_prowazekii_(str._Madrid_E) -------------------------------------------------- Rickettsia_rickettsii -------------------------------------------------- Acinetobacter_calcoaceticus -------------------------------------------------- Psychrobacter_pacificensis -------------------------------------------------- Chromohalobacter_marismortui -------------------------------------------------- F -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_sp. -------------------------------------------------- Pseudomonas_putida -------------------------------------------------- Coxiella_burnetii -------------------------------------------------- Methylococcus_capsulatus -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Allochromatium_vinosum -------------------------------------------------- Beggiatoa_sp._1401-13 -------------------------------------------------- Aeromonas_hydrophila -------------------------------------------------- Shewanella_putrefaciens -------------------------------------------------- Citrobacter_freundii -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Klebsiella_pneumoniae -------------------------------------------------- Plesiomonas_shigelloides -------------------------------------------------- Yersinia_pestis -------------------------------------------------- F -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Escherichia_coli_O157:H7 -------------------------------------------------- Escherichia_coli_O157:H7_EDL933 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli_K12 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Salmonella_typhimurium -------------------------------------------------- Serratia_marcescens -------------------------------------------------- Edwardsiella_tarda -------------------------------------------------- Proteus_vulgaris -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- F -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae_(operons_A-F) -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Xanthomonas_albilineans -------------------------------------------------- Xanthomonas_campestris -------------------------------------------------- Xylella_fastidiosa -------------------------------------------------- Dichelobacter_nodosus -------------------------------------------------- Francisella_tularensis -------------------------------------------------- Bordetella_parapertussis -------------------------------------------------- Bordetella_pertussis -------------------------------------------------- Bordetella_bronchiseptica -------------------------------------------------- unidentified_proteobacterium -------------------------------------------------- Burkholderia_mallei -------------------------------------------------- Burkholderia_sp. -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -------------------------------------------------- Comamonas_testosteroni -------------------------------------------------- Desulfovibrio_desulfuricans -------------------------------------------------- Myxococcus_xanthus -------------------------------------------------- Deferribacter_thermophilus -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_hermsii -------------------------------------------------- Spirochaeta_aurantia -------------------------------------------------- Treponema_pallidum_(rRNA_A) -------------------------------------------------- Leptonema_illini -------------------------------------------------- Leptospira_interrogans -------------------------------------------------- Chlamydia_trachomatis_D/UW-3/CX -------------------------------------------------- Chlamydia_trachomatis_L2/434/BU -------------------------------------------------- Chlamydia_muridarum -------------------------------------------------- Chlamydophila_pneumoniae_AR39 -------------------------------------------------- Chlamydophila_pneumoniae -------------------------------------------------- Chlamydophila_pneumoniae_J138 -------------------------------------------------- F -------------------------------------------------- Chlamydophila_psittaci -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- Porphyromonas_gingivalis -------------------------------------------------- Prosthecochloris_vibrioformis -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_sputorum -------------------------------------------------- F -------------------------------------------------- Helicobacter_pylori_J99 -------------------------------------------------- Helicobacter_pylori -------------------------------------------------- Acidobacterium_capsulatum -------------------------------------------------- Holophaga_foetida -------------------------------------------------- Arthrobacter_globiformis -------------------------------------------------- Micrococcus_luteus -------------------------------------------------- Frankia_sp. -------------------------------------------------- Streptomyces_bottropensis -------------------------------------------------- Streptomyces_scabiei -------------------------------------------------- Streptomyces_neyagawaensis -------------------------------------------------- F -------------------------------------------------- Streptomyces_sp. -------------------------------------------------- Streptomyces_acidiscabies -------------------------------------------------- Streptomyces_griseus -------------------------------------------------- Streptomyces_ornatus -------------------------------------------------- Streptomyces_subrutilus -------------------------------------------------- Streptomyces_bikiniensis -------------------------------------------------- Streptomyces_galbus -------------------------------------------------- Streptomyces_hygroscopicus -------------------------------------------------- Streptomyces_lincolnensis -------------------------------------------------- Streptomyces_coelicolor -------------------------------------------------- Streptomyces_tendae -------------------------------------------------- Streptomyces_ambofaciens -------------------------------------------------- Streptomyces_eurythermus -------------------------------------------------- Streptomyces_nodosus -------------------------------------------------- Streptomyces_sampsonii -------------------------------------------------- Streptomyces_glaucescens -------------------------------------------------- Streptomyces_pseudogriseolus -------------------------------------------------- Streptomyces_caelestis -------------------------------------------------- Streptomyces_bluensis -------------------------------------------------- Streptomyces_espinosus -------------------------------------------------- Streptomyces_mashuensis -------------------------------------------------- Streptomyces_rimosus -------------------------------------------------- Streptomyces_limosus -------------------------------------------------- Streptomyces_odorifer -------------------------------------------------- Streptomyces_felleus -------------------------------------------------- Streptomyces_albidoflavus -------------------------------------------------- Streptomyces_gougerotii -------------------------------------------------- Streptomyces_rutgersensis -------------------------------------------------- Streptomyces_intermedius -------------------------------------------------- F -------------------------------------------------- Streptomyces_thermoviolaceus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus -------------------------------------------------- Streptomyces_megasporus -------------------------------------------------- Streptomyces_thermolineatus -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_avium -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides -------------------------------------------------- Rhodococcus_erythropolis -------------------------------------------------- Corynebacterium_diphtheriae -------------------------------------------------- Actinomyces_israelii -------------------------------------------------- Brachyspira_hyodysenteriae -------------------------------------------------- Geotoga_subterranea -------------------------------------------------- Petrotoga_miotherma -------------------------------------------------- Brevinema_andersonii -------------------------------------------------- Herpetosiphon_aurantiacus -------------------------------------------------- F -------------------------------------------------- Aquifex_aeolicus -------------------------------------------------- Aquifex_pyrophilus -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- Thermus_aquaticus -------------------------------------------------- Thermomicrobium_roseum -------------------------------------------------- Pirellula_marina -------------------------------------------------- Pirellula_staleyi -------------------------------------------------- Planctomycetaceae_Schlesner_670 -------------------------------------------------- Gemmata_obscuriglobus -------------------------------------------------- Isosphaera_pallida -------------------------------------------------- Pyrococcus_abyssi -------------------------------------------------- Pyrococcus_horikoshii -------------------------------------------------- Pyrococcus_furiosus -------------------------------------------------- Thermococcus_celer -------------------------------------------------- Archaeoglobus_fulgidus -------------------------------------------------- Nanoarchaeum_equitans -------------------------------------------------- Aeropyrum_pernix_(str._K1) -------------------------------------------------- Pyrodictium_occultum -------------------------------------------------- Thermoproteus_tenax -------------------------------------------------- Sulfolobus_acidocaldarius -------------------------------------------------- Sulfolobus_solfataricus -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum -------------------------------------------------- Methanococcus_vannielii -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -------------------------------------------------- Natronorubrum_bangense -------------------------------------------------- Natronobacterium_innermongoliae -------------------------------------------------- Haloferax_volcanii -------------------------------------------------- Methanospirillum_hungatei -------------------------------------------------- Picrophilus_torridus_DSM_9790 -------------------------------------------------- Thermoplasma_acidophilum -------------------------------------------------- Giardia_ardeae -------------------------------------------------- Giardia_intestinalis -------------------------------------------------- Giardia_muris -------------------------------------------------- Amblyospora_bracteata -------------------------------------------------- Glomus_sp._W3349 -------------------------------------------------- Scutellospora_cerradensis -------------------------------------------------- Glomus_intraradices -------------------------------------------------- Smittium_culisetae -------------------------------------------------- Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus -------------------------------------------------- Tilletia_caries -------------------------------------------------- Mucor_circinelloides_f._lusitanicus -------------------------------------------------- Mucor_racemosus -------------------------------------------------- Rhizopus_oryzae -------------------------------------------------- Mytilus_edulis -------------------------------------------------- Placopecten_magellanicus -------------------------------------------------- Echinococcus_granulosus -------------------------------------------------- Drosophila_melanogaster -------------------------------------------------- Crossodonthina_koreana -------------------------------------------------- Androctonus_australis -------------------------------------------------- Okanagana_utahensis -------------------------------------------------- Artemia_salina -------------------------------------------------- Mus_musculus -------------------------------------------------- Rattus_norvegicus -------------------------------------------------- Homo_sapiens -------------------------------------------------- Oryctolagus_cuniculus -------------------------------------------------- Xenopus_borealis -------------------------------------------------- Xenopus_laevis -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Balamuthia_mandrillaris -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Entamoeba_histolytica -------------------------------------------------- Ichthyophonus_hoferi -------------------------------------------------- Dermocystidium_sp. -------------------------------------------------- Sphaerothecum_destruens -------------------------------------------------- Acanthocoepsis_unguiculata -------------------------------------------------- Diaphanoeca_grandis -------------------------------------------------- Allomyces_macrogynus -------------------------------------------------- Blastocladiella_emersonii -------------------------------------------------- Candida_albicans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Coccidioides_immitis -------------------------------------------------- Leishmania_major -------------------------------------------------- Trypanosoma_cruzi -------------------------------------------------- Trypanosoma_brucei -------------------------------------------------- Pneumocystis_carinii -------------------------------------------------- Cryptococcus_neoformans_var._neoformans -------------------------------------------------- fungal_contaminant_of_QPX_isolate -------------------------------------------------- Ustilago_maydis -------------------------------------------------- Mnemiopsis_leidyi -------------------------------------------------- Tripedalia_cystophora -------------------------------------------------- Microciona_prolifera -------------------------------------------------- Psorospermium_haeckeli -------------------------------------------------- Euglypha_rotunda -------------------------------------------------- Paulinella_chromatophora -------------------------------------------------- Antirrhinum_majus -------------------------------------------------- Sesamum_indicum -------------------------------------------------- Digitalis_grandiflora -------------------------------------------------- Plantago_lanceolata -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Arabidopsis_thaliana -------------------------------------------------- Sinapis_alba -------------------------------------------------- Solanum_tuberosum -------------------------------------------------- Fragaria_x_ananassa -------------------------------------------------- Glycine_max -------------------------------------------------- Oryza_sativa -------------------------------------------------- Zea_mays -------------------------------------------------- F -------------------------------------------------- Genicularia_spirotaenia -------------------------------------------------- F -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- FChlorella'_luteoviridis -------------------------------------------------- Oxytricha_longa -------------------------------------------------- Paraurostyla_weissei -------------------------------------------------- Cyrtohymena_citrina -------------------------------------------------- Gastrostyla_steinii -------------------------------------------------- Pleurotricha_lanceolota -------------------------------------------------- Onychodromus_quadricornutus -------------------------------------------------- Stylonychia_lemnae -------------------------------------------------- Stylonychia_mytilus -------------------------------------------------- Engelmanniella_mobilis -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Uroleptus_gallina -------------------------------------------------- Uroleptus_pisces -------------------------------------------------- Paruroleptus_lepisma -------------------------------------------------- Urostyla_grandis -------------------------------------------------- Balantidium_coli -------------------------------------------------- Euplotes_aediculatus -------------------------------------------------- Tetrahymena_thermophila -------------------------------------------------- Bangia_sp._(Northwest_Territories/NWT) -------------------------------------------------- Bangia_sp._(Virgin_Islands/VIS7) -------------------------------------------------- Erythrotrichia_carnea -------------------------------------------------- Rhodochaete_parvula -------------------------------------------------- Compsopogon_coeruleus -------------------------------------------------- Porphyridium_aerugineum -------------------------------------------------- Rhodella_maculata -------------------------------------------------- Aulacoseira_ambigua -------------------------------------------------- Aulacoseira_baicalensis -------------------------------------------------- Stephanopyxis_nipponica -------------------------------------------------- Coscinodiscus_radiatus -------------------------------------------------- Corethron_criophilum -------------------------------------------------- Amphora_cf._capitellata -------------------------------------------------- Sellaphora_pupula_f._capitata -------------------------------------------------- Thalassiosira_antarctica -------------------------------------------------- Encyonema_triangulatum -------------------------------------------------- Achnanthes_bongranii -------------------------------------------------- F -------------------------------------------------- Diatoma_tenue -------------------------------------------------- Grammatophora_marina -------------------------------------------------- Thalassionema_sp._p474 -------------------------------------------------- Rhaphoneis_belgicae -------------------------------------------------- Undatella_sp._p446 -------------------------------------------------- Cymatosira_belgica -------------------------------------------------- Odontella_sinensis -------------------------------------------------- Ditylum_brightwellii -------------------------------------------------- Lithodesmium_undulatum -------------------------------------------------- Thalassiosira_eccentrica -------------------------------------------------- Thalassiosira_pseudonana -------------------------------------------------- Skeletonema_costatum -------------------------------------------------- Pleurosira_cf._laevis -------------------------------------------------- Lauderia_borealis -------------------------------------------------- F -------------------------------------------------- Bolidomonas_mediterranea -------------------------------------------------- Bolidomonas_pacifica -------------------------------------------------- Labyrinthuloides_minuta -------------------------------------------------- Leptocylindrus_danicus -------------------------------------------------- Chaetoceros_sp. -------------------------------------------------- Aphanomyces_invadans -------------------------------------------------- Lagenidium_giganteum -------------------------------------------------- Melosira_varians -------------------------------------------------- Blastocystis_hominis -------------------------------------------------- Perkinsus_marinus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Alexandrium_fundyense -------------------------------------------------- Babesia_bigemina -------------------------------------------------- Babesia_canis -------------------------------------------------- Babesia_sp._'Oklahoma_dog' -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_rodhaini -------------------------------------------------- Babesia_gibsoni -------------------------------------------------- Babesia_bovis -------------------------------------------------- Jakoba_libera -------------------------------------------------- Reclinomonas_americana -------------------------------------------------- Bonamia_ostreae -------------------------------------------------- Audouinella_dasyae -------------------------------------------------- Audouinella_hermannii -------------------------------------------------- Nemalion_helminthoides -------------------------------------------------- Batrachospermum_gelatinosum -------------------------------------------------- Nemalionopsis_tortuosa -------------------------------------------------- Thorea_hispida -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Nemalionopsis_shawii UGCUCUGACCGUGUUGAGAAUAUUAUAUGCUUGUCUCA------------ Balbiania_investiens UGCUCUGACCGUGUUGAGAAUAUUAUAUGCUUGUCUAA------------ Batrachospermum_macrosporum CACCUGGUUGAUCCUGCCAGUGGUAUAUGCUUGUCUC------------- Ahnfeltia_plicata CAACCUGGUUGAUCCUGCCAGUGGUAUAUGCUCGUCUCA----------- Corallina_officinalis CAACCUGGUUGAUCCUGCCAGUGGUAUAUGCUUGUCUCA----------- Rhodogorgon_carriebowensis CACCUGGUUGAUCCUGCCAGU----------------------------- Bonnemaisonia_hamifera -------------------------------------------------- Gelidium_vagum C------------------------------------------------- Chondrus_crispus CAACCUGGUUGAUCCUGCCAGUGGUAUAUGCUUGUCUCA----------- Halymenia_plana -------------------------------------------------- Rhodymenia_leptophylla CACCUGGUUGAUCCUGCCAGUGGUAUAUGCUUGUCU-------------- Plocamiocolax_pulvinata CACCUGGUUGAUCCUGCCAGUGGUAUAUGCUUGUCU-------------- Ceramium_rubrum CACCCUGGUUGAUCCUGCCAGUGGUAUAUGCUUGUCUCAA---------- Gracilariopsis_sp. CAACCUGGUUGAUCCUGCCAGUGGUAUAUGCUUGUCUAU----------- Bostrychia_moritziana CA------------------------------------------------ Hildenbrandia_rubra CAACCUGGUUGAUCCUGCCAGUGGUAUAGUCUUGUCU------------- Dixonielloa_grisea CAACCUGGUUGAUCCUGCCAGUGGUAUAGUCUUGUCUCAAA--------- Naegleria_fowleri UGCUCUGACCGUGUUGAGAAUACUAUAUGCUUGUCUCAAAGCCUAAGCCA Naegleria_gruberi UACCUGGUUGAUCCUGCCAGUACUAUAUGCUUGUCUCAAAGCCUAAGCCA Hexamita_sp. -------------------------------------------------- Tritrichomonas_foetus UACU---------------------------------------------- Amblyospora_khaliulini -------------------------------------------------- Edhazardia_aedis -------------------------------------------------- Amblyospora_connecticus -------------------------------------------------- Intrapredatorus_barri -------------------------------------------------- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. -------------------------------------------------- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii -------------------------------------------------- Weiseria_palustris -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani -------------------------------------------------- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae -------------------------------------------------- Thelohania_solenopsae -------------------------------------------------- Visvesvaria_acridophagus -------------------------------------------------- Bacillidium_sp. -------------------------------------------------- Pseudonosema_cristatellae -------------------------------------------------- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum -------------------------------------------------- Pleistophora_mirandellae -------------------------------------------------- Trachipleistophora_hominis -------------------------------------------------- Vavraia_culicis -------------------------------------------------- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii -------------------------------------------------- F -------------------------------------------------- Dictyocoela_gammarellum -------------------------------------------------- Microsporidium_prosopium -------------------------------------------------- Antonospora_scoticae -------------------------------------------------- Paranosema_whitei -------------------------------------------------- #=GC SS_cons .................................................. Cynomorium_coccineum -------------------------------------------------- Cytinus_ruber -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Spinacia_oleracea -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Ricinus_communis -------------------------------------------------- F -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Pyramimonas_parkeae -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Pilostyles_thurberi -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Penicillium_chrysogenum -------------------------------------------------- Emericella_nidulans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Williopsis_saturnus_var._mrakii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Babesia_bovis -------------------------------------------------- Tetrahymena_pyriformis -------------------------------------------------- Suillus_sinuspaulianus -------------------------------------------------- Paramecium_tetraurelia -------------------------------------------------- Dictyostelium_discoideum -------------------------------------------------- Physarum_polycephalum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Hydnora_africana -------------------------------------------------- Codium_fragile -------------------------------------------------- Caulerpa_sertularioides -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cryptomonas_sp. -------------------------------------------------- Palmaria_palmata -------------------------------------------------- Heterosigma_akashiwo -------------------------------------------------- Skeletonema_pseudocostatum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Cyanidium_caldarium -------------------------------------------------- Emiliania_huxleyi -------------------------------------------------- Euglena_gracilis -------------------------------------------------- Anabaena_sp. -------------------------------------------------- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -------------------------------------------------- F -------------------------------------------------- Oscillatoria_agardhii -------------------------------------------------- Pleurocapsa_sp. -------------------------------------------------- Microcystis_aeruginosa -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos -------------------------------------------------- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Bacillus_anthracis -------------------------------------------------- Bacillus_cereus -------------------------------------------------- Enterococcus_faecalis -------------------------------------------------- Enterococcus_faecium -------------------------------------------------- Listeria_monocytogenes -------------------------------------------------- Bacillus_subtilis -------------------------------------------------- Bacillus_subtilis_A -------------------------------------------------- Bacillus_halodurans -------------------------------------------------- Staphylococcus_aureus -------------------------------------------------- Staphylococcus_aureus_N315 -------------------------------------------------- Lactococcus_lactis_subsp._lactis -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Lactobacillus_acidophilus -------------------------------------------------- Mycoplasma_capricolum -------------------------------------------------- Mycoplasma_mycoides -------------------------------------------------- Erysipelothrix_rhusiopathiae_(alpha-P15) -------------------------------------------------- Clostridium_innocuum -------------------------------------------------- Mycoplasma_genitalium -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_gallisepticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Mycoplasma_hyopneumoniae -------------------------------------------------- Fusobacterium_necrophorum -------------------------------------------------- Fusobacterium_nucleatum_subsp._nucleatum -------------------------------------------------- Streptobacillus_moniliformis -------------------------------------------------- Clostridium_botulinum_type_f -------------------------------------------------- Clostridium_tetani -------------------------------------------------- Clostridium_perfringens -------------------------------------------------- Clostridium_difficile -------------------------------------------------- Eubacterium_brachy -------------------------------------------------- Epulopiscium_sp. -------------------------------------------------- Heliobacterium_chlorum -------------------------------------------------- Glycine_max -------------------------------------------------- Oenothera_berteroana -------------------------------------------------- Secale_cereale -------------------------------------------------- Triticum_aestivum -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Gluconacetobacter_liquefaciens -------------------------------------------------- Bradyrhizobium_japonicum -------------------------------------------------- Rhodoblastus_acidophilus -------------------------------------------------- Azorhizobium_caulinodans -------------------------------------------------- Bartonella_quintana -------------------------------------------------- Mesorhizobium_loti -------------------------------------------------- Agrobacterium_tumefaciens -------------------------------------------------- Bartonella_bacilliformis -------------------------------------------------- Bartonella_henselae -------------------------------------------------- Brucella_melitensis -------------------------------------------------- Rhodobium_orientis -------------------------------------------------- F -------------------------------------------------- Rickettsia_bellii -------------------------------------------------- Rickettsia_felis_URRWXCal2 -------------------------------------------------- Rickettsia_prowazekii -------------------------------------------------- Rickettsia_prowazekii_(str._Madrid_E) -------------------------------------------------- Rickettsia_rickettsii -------------------------------------------------- Acinetobacter_calcoaceticus -------------------------------------------------- Psychrobacter_pacificensis -------------------------------------------------- Chromohalobacter_marismortui -------------------------------------------------- F -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_sp. -------------------------------------------------- Pseudomonas_putida -------------------------------------------------- Coxiella_burnetii -------------------------------------------------- Methylococcus_capsulatus -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Allochromatium_vinosum -------------------------------------------------- Beggiatoa_sp._1401-13 -------------------------------------------------- Aeromonas_hydrophila -------------------------------------------------- Shewanella_putrefaciens -------------------------------------------------- Citrobacter_freundii -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Klebsiella_pneumoniae -------------------------------------------------- Plesiomonas_shigelloides -------------------------------------------------- Yersinia_pestis -------------------------------------------------- F -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Escherichia_coli_O157:H7 -------------------------------------------------- Escherichia_coli_O157:H7_EDL933 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli_K12 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Salmonella_typhimurium -------------------------------------------------- Serratia_marcescens -------------------------------------------------- Edwardsiella_tarda -------------------------------------------------- Proteus_vulgaris -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- F -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae_(operons_A-F) -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Xanthomonas_albilineans -------------------------------------------------- Xanthomonas_campestris -------------------------------------------------- Xylella_fastidiosa -------------------------------------------------- Dichelobacter_nodosus -------------------------------------------------- Francisella_tularensis -------------------------------------------------- Bordetella_parapertussis -------------------------------------------------- Bordetella_pertussis -------------------------------------------------- Bordetella_bronchiseptica -------------------------------------------------- unidentified_proteobacterium -------------------------------------------------- Burkholderia_mallei -------------------------------------------------- Burkholderia_sp. -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -------------------------------------------------- Comamonas_testosteroni -------------------------------------------------- Desulfovibrio_desulfuricans -------------------------------------------------- Myxococcus_xanthus -------------------------------------------------- Deferribacter_thermophilus -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_hermsii -------------------------------------------------- Spirochaeta_aurantia -------------------------------------------------- Treponema_pallidum_(rRNA_A) -------------------------------------------------- Leptonema_illini -------------------------------------------------- Leptospira_interrogans -------------------------------------------------- Chlamydia_trachomatis_D/UW-3/CX -------------------------------------------------- Chlamydia_trachomatis_L2/434/BU -------------------------------------------------- Chlamydia_muridarum -------------------------------------------------- Chlamydophila_pneumoniae_AR39 -------------------------------------------------- Chlamydophila_pneumoniae -------------------------------------------------- Chlamydophila_pneumoniae_J138 -------------------------------------------------- F -------------------------------------------------- Chlamydophila_psittaci -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- Porphyromonas_gingivalis -------------------------------------------------- Prosthecochloris_vibrioformis -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_sputorum -------------------------------------------------- F -------------------------------------------------- Helicobacter_pylori_J99 -------------------------------------------------- Helicobacter_pylori -------------------------------------------------- Acidobacterium_capsulatum -------------------------------------------------- Holophaga_foetida -------------------------------------------------- Arthrobacter_globiformis -------------------------------------------------- Micrococcus_luteus -------------------------------------------------- Frankia_sp. -------------------------------------------------- Streptomyces_bottropensis -------------------------------------------------- Streptomyces_scabiei -------------------------------------------------- Streptomyces_neyagawaensis -------------------------------------------------- F -------------------------------------------------- Streptomyces_sp. -------------------------------------------------- Streptomyces_acidiscabies -------------------------------------------------- Streptomyces_griseus -------------------------------------------------- Streptomyces_ornatus -------------------------------------------------- Streptomyces_subrutilus -------------------------------------------------- Streptomyces_bikiniensis -------------------------------------------------- Streptomyces_galbus -------------------------------------------------- Streptomyces_hygroscopicus -------------------------------------------------- Streptomyces_lincolnensis -------------------------------------------------- Streptomyces_coelicolor -------------------------------------------------- Streptomyces_tendae -------------------------------------------------- Streptomyces_ambofaciens -------------------------------------------------- Streptomyces_eurythermus -------------------------------------------------- Streptomyces_nodosus -------------------------------------------------- Streptomyces_sampsonii -------------------------------------------------- Streptomyces_glaucescens -------------------------------------------------- Streptomyces_pseudogriseolus -------------------------------------------------- Streptomyces_caelestis -------------------------------------------------- Streptomyces_bluensis -------------------------------------------------- Streptomyces_espinosus -------------------------------------------------- Streptomyces_mashuensis -------------------------------------------------- Streptomyces_rimosus -------------------------------------------------- Streptomyces_limosus -------------------------------------------------- Streptomyces_odorifer -------------------------------------------------- Streptomyces_felleus -------------------------------------------------- Streptomyces_albidoflavus -------------------------------------------------- Streptomyces_gougerotii -------------------------------------------------- Streptomyces_rutgersensis -------------------------------------------------- Streptomyces_intermedius -------------------------------------------------- F -------------------------------------------------- Streptomyces_thermoviolaceus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus -------------------------------------------------- Streptomyces_megasporus -------------------------------------------------- Streptomyces_thermolineatus -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_avium -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides -------------------------------------------------- Rhodococcus_erythropolis -------------------------------------------------- Corynebacterium_diphtheriae -------------------------------------------------- Actinomyces_israelii -------------------------------------------------- Brachyspira_hyodysenteriae -------------------------------------------------- Geotoga_subterranea -------------------------------------------------- Petrotoga_miotherma -------------------------------------------------- Brevinema_andersonii -------------------------------------------------- Herpetosiphon_aurantiacus -------------------------------------------------- F -------------------------------------------------- Aquifex_aeolicus -------------------------------------------------- Aquifex_pyrophilus -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- Thermus_aquaticus -------------------------------------------------- Thermomicrobium_roseum -------------------------------------------------- Pirellula_marina -------------------------------------------------- Pirellula_staleyi -------------------------------------------------- Planctomycetaceae_Schlesner_670 -------------------------------------------------- Gemmata_obscuriglobus -------------------------------------------------- Isosphaera_pallida -------------------------------------------------- Pyrococcus_abyssi -------------------------------------------------- Pyrococcus_horikoshii -------------------------------------------------- Pyrococcus_furiosus -------------------------------------------------- Thermococcus_celer -------------------------------------------------- Archaeoglobus_fulgidus -------------------------------------------------- Nanoarchaeum_equitans -------------------------------------------------- Aeropyrum_pernix_(str._K1) -------------------------------------------------- Pyrodictium_occultum -------------------------------------------------- Thermoproteus_tenax -------------------------------------------------- Sulfolobus_acidocaldarius -------------------------------------------------- Sulfolobus_solfataricus -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum -------------------------------------------------- Methanococcus_vannielii -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -------------------------------------------------- Natronorubrum_bangense -------------------------------------------------- Natronobacterium_innermongoliae -------------------------------------------------- Haloferax_volcanii -------------------------------------------------- Methanospirillum_hungatei -------------------------------------------------- Picrophilus_torridus_DSM_9790 -------------------------------------------------- Thermoplasma_acidophilum -------------------------------------------------- Giardia_ardeae -------------------------------------------------- Giardia_intestinalis -------------------------------------------------- Giardia_muris -------------------------------------------------- Amblyospora_bracteata -------------------------------------------------- Glomus_sp._W3349 -------------------------------------------------- Scutellospora_cerradensis -------------------------------------------------- Glomus_intraradices -------------------------------------------------- Smittium_culisetae -------------------------------------------------- Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus -------------------------------------------------- Tilletia_caries -------------------------------------------------- Mucor_circinelloides_f._lusitanicus -------------------------------------------------- Mucor_racemosus -------------------------------------------------- Rhizopus_oryzae -------------------------------------------------- Mytilus_edulis -------------------------------------------------- Placopecten_magellanicus -------------------------------------------------- Echinococcus_granulosus -------------------------------------------------- Drosophila_melanogaster -------------------------------------------------- Crossodonthina_koreana -------------------------------------------------- Androctonus_australis -------------------------------------------------- Okanagana_utahensis -------------------------------------------------- Artemia_salina -------------------------------------------------- Mus_musculus -------------------------------------------------- Rattus_norvegicus -------------------------------------------------- Homo_sapiens -------------------------------------------------- Oryctolagus_cuniculus -------------------------------------------------- Xenopus_borealis -------------------------------------------------- Xenopus_laevis -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Balamuthia_mandrillaris -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Entamoeba_histolytica -------------------------------------------------- Ichthyophonus_hoferi -------------------------------------------------- Dermocystidium_sp. -------------------------------------------------- Sphaerothecum_destruens -------------------------------------------------- Acanthocoepsis_unguiculata -------------------------------------------------- Diaphanoeca_grandis -------------------------------------------------- Allomyces_macrogynus -------------------------------------------------- Blastocladiella_emersonii -------------------------------------------------- Candida_albicans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Coccidioides_immitis -------------------------------------------------- Leishmania_major -------------------------------------------------- Trypanosoma_cruzi -------------------------------------------------- Trypanosoma_brucei -------------------------------------------------- Pneumocystis_carinii -------------------------------------------------- Cryptococcus_neoformans_var._neoformans -------------------------------------------------- fungal_contaminant_of_QPX_isolate -------------------------------------------------- Ustilago_maydis -------------------------------------------------- Mnemiopsis_leidyi -------------------------------------------------- Tripedalia_cystophora -------------------------------------------------- Microciona_prolifera -------------------------------------------------- Psorospermium_haeckeli -------------------------------------------------- Euglypha_rotunda -------------------------------------------------- Paulinella_chromatophora -------------------------------------------------- Antirrhinum_majus -------------------------------------------------- Sesamum_indicum -------------------------------------------------- Digitalis_grandiflora -------------------------------------------------- Plantago_lanceolata -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Arabidopsis_thaliana -------------------------------------------------- Sinapis_alba -------------------------------------------------- Solanum_tuberosum -------------------------------------------------- Fragaria_x_ananassa -------------------------------------------------- Glycine_max -------------------------------------------------- Oryza_sativa -------------------------------------------------- Zea_mays -------------------------------------------------- F -------------------------------------------------- Genicularia_spirotaenia -------------------------------------------------- F -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- FChlorella'_luteoviridis -------------------------------------------------- Oxytricha_longa -------------------------------------------------- Paraurostyla_weissei -------------------------------------------------- Cyrtohymena_citrina -------------------------------------------------- Gastrostyla_steinii -------------------------------------------------- Pleurotricha_lanceolota -------------------------------------------------- Onychodromus_quadricornutus -------------------------------------------------- Stylonychia_lemnae -------------------------------------------------- Stylonychia_mytilus -------------------------------------------------- Engelmanniella_mobilis -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Uroleptus_gallina -------------------------------------------------- Uroleptus_pisces -------------------------------------------------- Paruroleptus_lepisma -------------------------------------------------- Urostyla_grandis -------------------------------------------------- Balantidium_coli -------------------------------------------------- Euplotes_aediculatus -------------------------------------------------- Tetrahymena_thermophila -------------------------------------------------- Bangia_sp._(Northwest_Territories/NWT) -------------------------------------------------- Bangia_sp._(Virgin_Islands/VIS7) -------------------------------------------------- Erythrotrichia_carnea -------------------------------------------------- Rhodochaete_parvula -------------------------------------------------- Compsopogon_coeruleus -------------------------------------------------- Porphyridium_aerugineum -------------------------------------------------- Rhodella_maculata -------------------------------------------------- Aulacoseira_ambigua -------------------------------------------------- Aulacoseira_baicalensis -------------------------------------------------- Stephanopyxis_nipponica -------------------------------------------------- Coscinodiscus_radiatus -------------------------------------------------- Corethron_criophilum -------------------------------------------------- Amphora_cf._capitellata -------------------------------------------------- Sellaphora_pupula_f._capitata -------------------------------------------------- Thalassiosira_antarctica -------------------------------------------------- Encyonema_triangulatum -------------------------------------------------- Achnanthes_bongranii -------------------------------------------------- F -------------------------------------------------- Diatoma_tenue -------------------------------------------------- Grammatophora_marina -------------------------------------------------- Thalassionema_sp._p474 -------------------------------------------------- Rhaphoneis_belgicae -------------------------------------------------- Undatella_sp._p446 -------------------------------------------------- Cymatosira_belgica -------------------------------------------------- Odontella_sinensis -------------------------------------------------- Ditylum_brightwellii -------------------------------------------------- Lithodesmium_undulatum -------------------------------------------------- Thalassiosira_eccentrica -------------------------------------------------- Thalassiosira_pseudonana -------------------------------------------------- Skeletonema_costatum -------------------------------------------------- Pleurosira_cf._laevis -------------------------------------------------- Lauderia_borealis -------------------------------------------------- F -------------------------------------------------- Bolidomonas_mediterranea -------------------------------------------------- Bolidomonas_pacifica -------------------------------------------------- Labyrinthuloides_minuta -------------------------------------------------- Leptocylindrus_danicus -------------------------------------------------- Chaetoceros_sp. -------------------------------------------------- Aphanomyces_invadans -------------------------------------------------- Lagenidium_giganteum -------------------------------------------------- Melosira_varians -------------------------------------------------- Blastocystis_hominis -------------------------------------------------- Perkinsus_marinus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Alexandrium_fundyense -------------------------------------------------- Babesia_bigemina -------------------------------------------------- Babesia_canis -------------------------------------------------- Babesia_sp._'Oklahoma_dog' -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_rodhaini -------------------------------------------------- Babesia_gibsoni -------------------------------------------------- Babesia_bovis -------------------------------------------------- Jakoba_libera -------------------------------------------------- Reclinomonas_americana -------------------------------------------------- Bonamia_ostreae -------------------------------------------------- Audouinella_dasyae -------------------------------------------------- Audouinella_hermannii -------------------------------------------------- Nemalion_helminthoides -------------------------------------------------- Batrachospermum_gelatinosum -------------------------------------------------- Nemalionopsis_tortuosa -------------------------------------------------- Thorea_hispida -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Nemalionopsis_shawii -------------------------------------------------- Balbiania_investiens -------------------------------------------------- Batrachospermum_macrosporum -------------------------------------------------- Ahnfeltia_plicata -------------------------------------------------- Corallina_officinalis -------------------------------------------------- Rhodogorgon_carriebowensis -------------------------------------------------- Bonnemaisonia_hamifera -------------------------------------------------- Gelidium_vagum -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Halymenia_plana -------------------------------------------------- Rhodymenia_leptophylla -------------------------------------------------- Plocamiocolax_pulvinata -------------------------------------------------- Ceramium_rubrum -------------------------------------------------- Gracilariopsis_sp. -------------------------------------------------- Bostrychia_moritziana -------------------------------------------------- Hildenbrandia_rubra -------------------------------------------------- Dixonielloa_grisea -------------------------------------------------- Naegleria_fowleri UGCAAAUGUAAGAUCAGUCAUAUGUGGUUCACGCCACUAUAAUGACAGUC Naegleria_gruberi UGCAAAUGUAAGAUCAAUCAUAUGCGGUUUCGGCCGUGUAUAAUGAUAGU Hexamita_sp. -------------------------------------------------- Tritrichomonas_foetus -------------------------------------------------- Amblyospora_khaliulini -------------------------------------------------- Edhazardia_aedis -------------------------------------------------- Amblyospora_connecticus -------------------------------------------------- Intrapredatorus_barri -------------------------------------------------- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. -------------------------------------------------- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii -------------------------------------------------- Weiseria_palustris -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani -------------------------------------------------- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae -------------------------------------------------- Thelohania_solenopsae -------------------------------------------------- Visvesvaria_acridophagus -------------------------------------------------- Bacillidium_sp. -------------------------------------------------- Pseudonosema_cristatellae -------------------------------------------------- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum -------------------------------------------------- Pleistophora_mirandellae -------------------------------------------------- Trachipleistophora_hominis -------------------------------------------------- Vavraia_culicis -------------------------------------------------- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii -------------------------------------------------- F -------------------------------------------------- Dictyocoela_gammarellum -------------------------------------------------- Microsporidium_prosopium -------------------------------------------------- Antonospora_scoticae -------------------------------------------------- Paranosema_whitei -------------------------------------------------- #=GC SS_cons .................................................. Cynomorium_coccineum -------------------------------------------------- Cytinus_ruber -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Spinacia_oleracea -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Ricinus_communis -------------------------------------------------- F -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Pyramimonas_parkeae -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Pilostyles_thurberi -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Penicillium_chrysogenum -------------------------------------------------- Emericella_nidulans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Williopsis_saturnus_var._mrakii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Babesia_bovis -------------------------------------------------- Tetrahymena_pyriformis -------------------------------------------------- Suillus_sinuspaulianus -------------------------------------------------- Paramecium_tetraurelia -------------------------------------------------- Dictyostelium_discoideum -------------------------------------------------- Physarum_polycephalum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Hydnora_africana -------------------------------------------------- Codium_fragile -------------------------------------------------- Caulerpa_sertularioides -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cryptomonas_sp. -------------------------------------------------- Palmaria_palmata -------------------------------------------------- Heterosigma_akashiwo -------------------------------------------------- Skeletonema_pseudocostatum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Cyanidium_caldarium -------------------------------------------------- Emiliania_huxleyi -------------------------------------------------- Euglena_gracilis -------------------------------------------------- Anabaena_sp. -------------------------------------------------- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -------------------------------------------------- F -------------------------------------------------- Oscillatoria_agardhii -------------------------------------------------- Pleurocapsa_sp. -------------------------------------------------- Microcystis_aeruginosa -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos -------------------------------------------------- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Bacillus_anthracis -------------------------------------------------- Bacillus_cereus -------------------------------------------------- Enterococcus_faecalis -------------------------------------------------- Enterococcus_faecium -------------------------------------------------- Listeria_monocytogenes -------------------------------------------------- Bacillus_subtilis -------------------------------------------------- Bacillus_subtilis_A -------------------------------------------------- Bacillus_halodurans -------------------------------------------------- Staphylococcus_aureus -------------------------------------------------- Staphylococcus_aureus_N315 -------------------------------------------------- Lactococcus_lactis_subsp._lactis -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Lactobacillus_acidophilus -------------------------------------------------- Mycoplasma_capricolum -------------------------------------------------- Mycoplasma_mycoides -------------------------------------------------- Erysipelothrix_rhusiopathiae_(alpha-P15) -------------------------------------------------- Clostridium_innocuum -------------------------------------------------- Mycoplasma_genitalium -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_gallisepticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Mycoplasma_hyopneumoniae -------------------------------------------------- Fusobacterium_necrophorum -------------------------------------------------- Fusobacterium_nucleatum_subsp._nucleatum -------------------------------------------------- Streptobacillus_moniliformis -------------------------------------------------- Clostridium_botulinum_type_f -------------------------------------------------- Clostridium_tetani -------------------------------------------------- Clostridium_perfringens -------------------------------------------------- Clostridium_difficile -------------------------------------------------- Eubacterium_brachy -------------------------------------------------- Epulopiscium_sp. -------------------------------------------------- Heliobacterium_chlorum -------------------------------------------------- Glycine_max -------------------------------------------------- Oenothera_berteroana -------------------------------------------------- Secale_cereale -------------------------------------------------- Triticum_aestivum -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Gluconacetobacter_liquefaciens -------------------------------------------------- Bradyrhizobium_japonicum -------------------------------------------------- Rhodoblastus_acidophilus -------------------------------------------------- Azorhizobium_caulinodans -------------------------------------------------- Bartonella_quintana -------------------------------------------------- Mesorhizobium_loti -------------------------------------------------- Agrobacterium_tumefaciens -------------------------------------------------- Bartonella_bacilliformis -------------------------------------------------- Bartonella_henselae -------------------------------------------------- Brucella_melitensis -------------------------------------------------- Rhodobium_orientis -------------------------------------------------- F -------------------------------------------------- Rickettsia_bellii -------------------------------------------------- Rickettsia_felis_URRWXCal2 -------------------------------------------------- Rickettsia_prowazekii -------------------------------------------------- Rickettsia_prowazekii_(str._Madrid_E) -------------------------------------------------- Rickettsia_rickettsii -------------------------------------------------- Acinetobacter_calcoaceticus -------------------------------------------------- Psychrobacter_pacificensis -------------------------------------------------- Chromohalobacter_marismortui -------------------------------------------------- F -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_sp. -------------------------------------------------- Pseudomonas_putida -------------------------------------------------- Coxiella_burnetii -------------------------------------------------- Methylococcus_capsulatus -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Allochromatium_vinosum -------------------------------------------------- Beggiatoa_sp._1401-13 -------------------------------------------------- Aeromonas_hydrophila -------------------------------------------------- Shewanella_putrefaciens -------------------------------------------------- Citrobacter_freundii -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Klebsiella_pneumoniae -------------------------------------------------- Plesiomonas_shigelloides -------------------------------------------------- Yersinia_pestis -------------------------------------------------- F -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Escherichia_coli_O157:H7 -------------------------------------------------- Escherichia_coli_O157:H7_EDL933 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli_K12 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Salmonella_typhimurium -------------------------------------------------- Serratia_marcescens -------------------------------------------------- Edwardsiella_tarda -------------------------------------------------- Proteus_vulgaris -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- F -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae_(operons_A-F) -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Xanthomonas_albilineans -------------------------------------------------- Xanthomonas_campestris -------------------------------------------------- Xylella_fastidiosa -------------------------------------------------- Dichelobacter_nodosus -------------------------------------------------- Francisella_tularensis -------------------------------------------------- Bordetella_parapertussis -------------------------------------------------- Bordetella_pertussis -------------------------------------------------- Bordetella_bronchiseptica -------------------------------------------------- unidentified_proteobacterium -------------------------------------------------- Burkholderia_mallei -------------------------------------------------- Burkholderia_sp. -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -------------------------------------------------- Comamonas_testosteroni -------------------------------------------------- Desulfovibrio_desulfuricans -------------------------------------------------- Myxococcus_xanthus -------------------------------------------------- Deferribacter_thermophilus -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_hermsii -------------------------------------------------- Spirochaeta_aurantia -------------------------------------------------- Treponema_pallidum_(rRNA_A) -------------------------------------------------- Leptonema_illini -------------------------------------------------- Leptospira_interrogans -------------------------------------------------- Chlamydia_trachomatis_D/UW-3/CX -------------------------------------------------- Chlamydia_trachomatis_L2/434/BU -------------------------------------------------- Chlamydia_muridarum -------------------------------------------------- Chlamydophila_pneumoniae_AR39 -------------------------------------------------- Chlamydophila_pneumoniae -------------------------------------------------- Chlamydophila_pneumoniae_J138 -------------------------------------------------- F -------------------------------------------------- Chlamydophila_psittaci -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- Porphyromonas_gingivalis -------------------------------------------------- Prosthecochloris_vibrioformis -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_sputorum -------------------------------------------------- F -------------------------------------------------- Helicobacter_pylori_J99 -------------------------------------------------- Helicobacter_pylori -------------------------------------------------- Acidobacterium_capsulatum -------------------------------------------------- Holophaga_foetida -------------------------------------------------- Arthrobacter_globiformis -------------------------------------------------- Micrococcus_luteus -------------------------------------------------- Frankia_sp. -------------------------------------------------- Streptomyces_bottropensis -------------------------------------------------- Streptomyces_scabiei -------------------------------------------------- Streptomyces_neyagawaensis -------------------------------------------------- F -------------------------------------------------- Streptomyces_sp. -------------------------------------------------- Streptomyces_acidiscabies -------------------------------------------------- Streptomyces_griseus -------------------------------------------------- Streptomyces_ornatus -------------------------------------------------- Streptomyces_subrutilus -------------------------------------------------- Streptomyces_bikiniensis -------------------------------------------------- Streptomyces_galbus -------------------------------------------------- Streptomyces_hygroscopicus -------------------------------------------------- Streptomyces_lincolnensis -------------------------------------------------- Streptomyces_coelicolor -------------------------------------------------- Streptomyces_tendae -------------------------------------------------- Streptomyces_ambofaciens -------------------------------------------------- Streptomyces_eurythermus -------------------------------------------------- Streptomyces_nodosus -------------------------------------------------- Streptomyces_sampsonii -------------------------------------------------- Streptomyces_glaucescens -------------------------------------------------- Streptomyces_pseudogriseolus -------------------------------------------------- Streptomyces_caelestis -------------------------------------------------- Streptomyces_bluensis -------------------------------------------------- Streptomyces_espinosus -------------------------------------------------- Streptomyces_mashuensis -------------------------------------------------- Streptomyces_rimosus -------------------------------------------------- Streptomyces_limosus -------------------------------------------------- Streptomyces_odorifer -------------------------------------------------- Streptomyces_felleus -------------------------------------------------- Streptomyces_albidoflavus -------------------------------------------------- Streptomyces_gougerotii -------------------------------------------------- Streptomyces_rutgersensis -------------------------------------------------- Streptomyces_intermedius -------------------------------------------------- F -------------------------------------------------- Streptomyces_thermoviolaceus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus -------------------------------------------------- Streptomyces_megasporus -------------------------------------------------- Streptomyces_thermolineatus -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_avium -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides -------------------------------------------------- Rhodococcus_erythropolis -------------------------------------------------- Corynebacterium_diphtheriae -------------------------------------------------- Actinomyces_israelii -------------------------------------------------- Brachyspira_hyodysenteriae -------------------------------------------------- Geotoga_subterranea -------------------------------------------------- Petrotoga_miotherma -------------------------------------------------- Brevinema_andersonii -------------------------------------------------- Herpetosiphon_aurantiacus -------------------------------------------------- F -------------------------------------------------- Aquifex_aeolicus -------------------------------------------------- Aquifex_pyrophilus -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- Thermus_aquaticus -------------------------------------------------- Thermomicrobium_roseum -------------------------------------------------- Pirellula_marina -------------------------------------------------- Pirellula_staleyi -------------------------------------------------- Planctomycetaceae_Schlesner_670 -------------------------------------------------- Gemmata_obscuriglobus -------------------------------------------------- Isosphaera_pallida -------------------------------------------------- Pyrococcus_abyssi -------------------------------------------------- Pyrococcus_horikoshii -------------------------------------------------- Pyrococcus_furiosus -------------------------------------------------- Thermococcus_celer -------------------------------------------------- Archaeoglobus_fulgidus -------------------------------------------------- Nanoarchaeum_equitans -------------------------------------------------- Aeropyrum_pernix_(str._K1) -------------------------------------------------- Pyrodictium_occultum -------------------------------------------------- Thermoproteus_tenax -------------------------------------------------- Sulfolobus_acidocaldarius -------------------------------------------------- Sulfolobus_solfataricus -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum -------------------------------------------------- Methanococcus_vannielii -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -------------------------------------------------- Natronorubrum_bangense -------------------------------------------------- Natronobacterium_innermongoliae -------------------------------------------------- Haloferax_volcanii -------------------------------------------------- Methanospirillum_hungatei -------------------------------------------------- Picrophilus_torridus_DSM_9790 -------------------------------------------------- Thermoplasma_acidophilum -------------------------------------------------- Giardia_ardeae -------------------------------------------------- Giardia_intestinalis -------------------------------------------------- Giardia_muris -------------------------------------------------- Amblyospora_bracteata -------------------------------------------------- Glomus_sp._W3349 -------------------------------------------------- Scutellospora_cerradensis -------------------------------------------------- Glomus_intraradices -------------------------------------------------- Smittium_culisetae -------------------------------------------------- Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus -------------------------------------------------- Tilletia_caries -------------------------------------------------- Mucor_circinelloides_f._lusitanicus -------------------------------------------------- Mucor_racemosus -------------------------------------------------- Rhizopus_oryzae -------------------------------------------------- Mytilus_edulis -------------------------------------------------- Placopecten_magellanicus -------------------------------------------------- Echinococcus_granulosus -------------------------------------------------- Drosophila_melanogaster -------------------------------------------------- Crossodonthina_koreana -------------------------------------------------- Androctonus_australis -------------------------------------------------- Okanagana_utahensis -------------------------------------------------- Artemia_salina -------------------------------------------------- Mus_musculus -------------------------------------------------- Rattus_norvegicus -------------------------------------------------- Homo_sapiens -------------------------------------------------- Oryctolagus_cuniculus -------------------------------------------------- Xenopus_borealis -------------------------------------------------- Xenopus_laevis -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Balamuthia_mandrillaris -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Entamoeba_histolytica -------------------------------------------------- Ichthyophonus_hoferi -------------------------------------------------- Dermocystidium_sp. -------------------------------------------------- Sphaerothecum_destruens -------------------------------------------------- Acanthocoepsis_unguiculata -------------------------------------------------- Diaphanoeca_grandis -------------------------------------------------- Allomyces_macrogynus -------------------------------------------------- Blastocladiella_emersonii -------------------------------------------------- Candida_albicans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Coccidioides_immitis -------------------------------------------------- Leishmania_major -------------------------------------------------- Trypanosoma_cruzi -------------------------------------------------- Trypanosoma_brucei -------------------------------------------------- Pneumocystis_carinii -------------------------------------------------- Cryptococcus_neoformans_var._neoformans -------------------------------------------------- fungal_contaminant_of_QPX_isolate -------------------------------------------------- Ustilago_maydis -------------------------------------------------- Mnemiopsis_leidyi -------------------------------------------------- Tripedalia_cystophora -------------------------------------------------- Microciona_prolifera -------------------------------------------------- Psorospermium_haeckeli -------------------------------------------------- Euglypha_rotunda -------------------------------------------------- Paulinella_chromatophora -------------------------------------------------- Antirrhinum_majus -------------------------------------------------- Sesamum_indicum -------------------------------------------------- Digitalis_grandiflora -------------------------------------------------- Plantago_lanceolata -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Arabidopsis_thaliana -------------------------------------------------- Sinapis_alba -------------------------------------------------- Solanum_tuberosum -------------------------------------------------- Fragaria_x_ananassa -------------------------------------------------- Glycine_max -------------------------------------------------- Oryza_sativa -------------------------------------------------- Zea_mays -------------------------------------------------- F -------------------------------------------------- Genicularia_spirotaenia -------------------------------------------------- F -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- FChlorella'_luteoviridis -------------------------------------------------- Oxytricha_longa -------------------------------------------------- Paraurostyla_weissei -------------------------------------------------- Cyrtohymena_citrina -------------------------------------------------- Gastrostyla_steinii -------------------------------------------------- Pleurotricha_lanceolota -------------------------------------------------- Onychodromus_quadricornutus -------------------------------------------------- Stylonychia_lemnae -------------------------------------------------- Stylonychia_mytilus -------------------------------------------------- Engelmanniella_mobilis -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Uroleptus_gallina -------------------------------------------------- Uroleptus_pisces -------------------------------------------------- Paruroleptus_lepisma -------------------------------------------------- Urostyla_grandis -------------------------------------------------- Balantidium_coli -------------------------------------------------- Euplotes_aediculatus -------------------------------------------------- Tetrahymena_thermophila -------------------------------------------------- Bangia_sp._(Northwest_Territories/NWT) -------------------------------------------------- Bangia_sp._(Virgin_Islands/VIS7) -------------------------------------------------- Erythrotrichia_carnea -------------------------------------------------- Rhodochaete_parvula -------------------------------------------------- Compsopogon_coeruleus -------------------------------------------------- Porphyridium_aerugineum -------------------------------------------------- Rhodella_maculata -------------------------------------------------- Aulacoseira_ambigua -------------------------------------------------- Aulacoseira_baicalensis -------------------------------------------------- Stephanopyxis_nipponica -------------------------------------------------- Coscinodiscus_radiatus -------------------------------------------------- Corethron_criophilum -------------------------------------------------- Amphora_cf._capitellata -------------------------------------------------- Sellaphora_pupula_f._capitata -------------------------------------------------- Thalassiosira_antarctica -------------------------------------------------- Encyonema_triangulatum -------------------------------------------------- Achnanthes_bongranii -------------------------------------------------- F -------------------------------------------------- Diatoma_tenue -------------------------------------------------- Grammatophora_marina -------------------------------------------------- Thalassionema_sp._p474 -------------------------------------------------- Rhaphoneis_belgicae -------------------------------------------------- Undatella_sp._p446 -------------------------------------------------- Cymatosira_belgica -------------------------------------------------- Odontella_sinensis -------------------------------------------------- Ditylum_brightwellii -------------------------------------------------- Lithodesmium_undulatum -------------------------------------------------- Thalassiosira_eccentrica -------------------------------------------------- Thalassiosira_pseudonana -------------------------------------------------- Skeletonema_costatum -------------------------------------------------- Pleurosira_cf._laevis -------------------------------------------------- Lauderia_borealis -------------------------------------------------- F -------------------------------------------------- Bolidomonas_mediterranea -------------------------------------------------- Bolidomonas_pacifica -------------------------------------------------- Labyrinthuloides_minuta -------------------------------------------------- Leptocylindrus_danicus -------------------------------------------------- Chaetoceros_sp. -------------------------------------------------- Aphanomyces_invadans -------------------------------------------------- Lagenidium_giganteum -------------------------------------------------- Melosira_varians -------------------------------------------------- Blastocystis_hominis -------------------------------------------------- Perkinsus_marinus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Alexandrium_fundyense -------------------------------------------------- Babesia_bigemina -------------------------------------------------- Babesia_canis -------------------------------------------------- Babesia_sp._'Oklahoma_dog' -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_rodhaini -------------------------------------------------- Babesia_gibsoni -------------------------------------------------- Babesia_bovis -------------------------------------------------- Jakoba_libera -------------------------------------------------- Reclinomonas_americana -------------------------------------------------- Bonamia_ostreae -------------------------------------------------- Audouinella_dasyae -------------------------------------------------- Audouinella_hermannii -------------------------------------------------- Nemalion_helminthoides -------------------------------------------------- Batrachospermum_gelatinosum -------------------------------------------------- Nemalionopsis_tortuosa -------------------------------------------------- Thorea_hispida -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Nemalionopsis_shawii -------------------------------------------------- Balbiania_investiens -------------------------------------------------- Batrachospermum_macrosporum -------------------------------------------------- Ahnfeltia_plicata -------------------------------------------------- Corallina_officinalis -------------------------------------------------- Rhodogorgon_carriebowensis -------------------------------------------------- Bonnemaisonia_hamifera -------------------------------------------------- Gelidium_vagum -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Halymenia_plana -------------------------------------------------- Rhodymenia_leptophylla -------------------------------------------------- Plocamiocolax_pulvinata -------------------------------------------------- Ceramium_rubrum -------------------------------------------------- Gracilariopsis_sp. -------------------------------------------------- Bostrychia_moritziana -------------------------------------------------- Hildenbrandia_rubra -------------------------------------------------- Dixonielloa_grisea -------------------------------------------------- Naegleria_fowleri UGUGGAAGGCUCAUUAUAACAGUUAUACACCUAGCCACUGGAAAGUUUAC Naegleria_gruberi CUGUGGAAGGCUCAUUAUAACAGUUAUACUCCUAGCCACUGGAAAGUUUA Hexamita_sp. -------------------------------------------------- Tritrichomonas_foetus -------------------------------------------------- Amblyospora_khaliulini -------------------------------------------------- Edhazardia_aedis -------------------------------------------------- Amblyospora_connecticus -------------------------------------------------- Intrapredatorus_barri -------------------------------------------------- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. -------------------------------------------------- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii -------------------------------------------------- Weiseria_palustris -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani -------------------------------------------------- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae -------------------------------------------------- Thelohania_solenopsae -------------------------------------------------- Visvesvaria_acridophagus -------------------------------------------------- Bacillidium_sp. -------------------------------------------------- Pseudonosema_cristatellae -------------------------------------------------- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum -------------------------------------------------- Pleistophora_mirandellae -------------------------------------------------- Trachipleistophora_hominis -------------------------------------------------- Vavraia_culicis -------------------------------------------------- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii -------------------------------------------------- F -------------------------------------------------- Dictyocoela_gammarellum -------------------------------------------------- Microsporidium_prosopium -------------------------------------------------- Antonospora_scoticae -------------------------------------------------- Paranosema_whitei -------------------------------------------------- #=GC SS_cons .................................................. Cynomorium_coccineum -------------------------------------------------- Cytinus_ruber -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Spinacia_oleracea -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Ricinus_communis -------------------------------------------------- F -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Pyramimonas_parkeae -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Pilostyles_thurberi -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Penicillium_chrysogenum -------------------------------------------------- Emericella_nidulans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Williopsis_saturnus_var._mrakii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Babesia_bovis -------------------------------------------------- Tetrahymena_pyriformis -------------------------------------------------- Suillus_sinuspaulianus -------------------------------------------------- Paramecium_tetraurelia -------------------------------------------------- Dictyostelium_discoideum -------------------------------------------------- Physarum_polycephalum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Hydnora_africana -------------------------------------------------- Codium_fragile -------------------------------------------------- Caulerpa_sertularioides -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cryptomonas_sp. -------------------------------------------------- Palmaria_palmata -------------------------------------------------- Heterosigma_akashiwo -------------------------------------------------- Skeletonema_pseudocostatum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Cyanidium_caldarium -------------------------------------------------- Emiliania_huxleyi -------------------------------------------------- Euglena_gracilis -------------------------------------------------- Anabaena_sp. -------------------------------------------------- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -------------------------------------------------- F -------------------------------------------------- Oscillatoria_agardhii -------------------------------------------------- Pleurocapsa_sp. -------------------------------------------------- Microcystis_aeruginosa -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos -------------------------------------------------- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Bacillus_anthracis -------------------------------------------------- Bacillus_cereus -------------------------------------------------- Enterococcus_faecalis -------------------------------------------------- Enterococcus_faecium -------------------------------------------------- Listeria_monocytogenes -------------------------------------------------- Bacillus_subtilis -------------------------------------------------- Bacillus_subtilis_A -------------------------------------------------- Bacillus_halodurans -------------------------------------------------- Staphylococcus_aureus -------------------------------------------------- Staphylococcus_aureus_N315 -------------------------------------------------- Lactococcus_lactis_subsp._lactis -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Lactobacillus_acidophilus -------------------------------------------------- Mycoplasma_capricolum -------------------------------------------------- Mycoplasma_mycoides -------------------------------------------------- Erysipelothrix_rhusiopathiae_(alpha-P15) -------------------------------------------------- Clostridium_innocuum -------------------------------------------------- Mycoplasma_genitalium -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_gallisepticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Mycoplasma_hyopneumoniae -------------------------------------------------- Fusobacterium_necrophorum -------------------------------------------------- Fusobacterium_nucleatum_subsp._nucleatum -------------------------------------------------- Streptobacillus_moniliformis -------------------------------------------------- Clostridium_botulinum_type_f -------------------------------------------------- Clostridium_tetani -------------------------------------------------- Clostridium_perfringens -------------------------------------------------- Clostridium_difficile -------------------------------------------------- Eubacterium_brachy -------------------------------------------------- Epulopiscium_sp. -------------------------------------------------- Heliobacterium_chlorum -------------------------------------------------- Glycine_max -------------------------------------------------- Oenothera_berteroana -------------------------------------------------- Secale_cereale -------------------------------------------------- Triticum_aestivum -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Gluconacetobacter_liquefaciens -------------------------------------------------- Bradyrhizobium_japonicum -------------------------------------------------- Rhodoblastus_acidophilus -------------------------------------------------- Azorhizobium_caulinodans -------------------------------------------------- Bartonella_quintana -------------------------------------------------- Mesorhizobium_loti -------------------------------------------------- Agrobacterium_tumefaciens -------------------------------------------------- Bartonella_bacilliformis -------------------------------------------------- Bartonella_henselae -------------------------------------------------- Brucella_melitensis -------------------------------------------------- Rhodobium_orientis -------------------------------------------------- F -------------------------------------------------- Rickettsia_bellii -------------------------------------------------- Rickettsia_felis_URRWXCal2 -------------------------------------------------- Rickettsia_prowazekii -------------------------------------------------- Rickettsia_prowazekii_(str._Madrid_E) -------------------------------------------------- Rickettsia_rickettsii -------------------------------------------------- Acinetobacter_calcoaceticus -------------------------------------------------- Psychrobacter_pacificensis -------------------------------------------------- Chromohalobacter_marismortui -------------------------------------------------- F -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_sp. -------------------------------------------------- Pseudomonas_putida -------------------------------------------------- Coxiella_burnetii -------------------------------------------------- Methylococcus_capsulatus -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Allochromatium_vinosum -------------------------------------------------- Beggiatoa_sp._1401-13 -------------------------------------------------- Aeromonas_hydrophila -------------------------------------------------- Shewanella_putrefaciens -------------------------------------------------- Citrobacter_freundii -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Klebsiella_pneumoniae -------------------------------------------------- Plesiomonas_shigelloides -------------------------------------------------- Yersinia_pestis -------------------------------------------------- F -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Escherichia_coli_O157:H7 -------------------------------------------------- Escherichia_coli_O157:H7_EDL933 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli_K12 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Salmonella_typhimurium -------------------------------------------------- Serratia_marcescens -------------------------------------------------- Edwardsiella_tarda -------------------------------------------------- Proteus_vulgaris -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- F -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae_(operons_A-F) -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Xanthomonas_albilineans -------------------------------------------------- Xanthomonas_campestris -------------------------------------------------- Xylella_fastidiosa -------------------------------------------------- Dichelobacter_nodosus -------------------------------------------------- Francisella_tularensis -------------------------------------------------- Bordetella_parapertussis -------------------------------------------------- Bordetella_pertussis -------------------------------------------------- Bordetella_bronchiseptica -------------------------------------------------- unidentified_proteobacterium -------------------------------------------------- Burkholderia_mallei -------------------------------------------------- Burkholderia_sp. -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -------------------------------------------------- Comamonas_testosteroni -------------------------------------------------- Desulfovibrio_desulfuricans -------------------------------------------------- Myxococcus_xanthus -------------------------------------------------- Deferribacter_thermophilus -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_hermsii -------------------------------------------------- Spirochaeta_aurantia -------------------------------------------------- Treponema_pallidum_(rRNA_A) -------------------------------------------------- Leptonema_illini -------------------------------------------------- Leptospira_interrogans -------------------------------------------------- Chlamydia_trachomatis_D/UW-3/CX -------------------------------------------------- Chlamydia_trachomatis_L2/434/BU -------------------------------------------------- Chlamydia_muridarum -------------------------------------------------- Chlamydophila_pneumoniae_AR39 -------------------------------------------------- Chlamydophila_pneumoniae -------------------------------------------------- Chlamydophila_pneumoniae_J138 -------------------------------------------------- F -------------------------------------------------- Chlamydophila_psittaci -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- Porphyromonas_gingivalis -------------------------------------------------- Prosthecochloris_vibrioformis -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_sputorum -------------------------------------------------- F -------------------------------------------------- Helicobacter_pylori_J99 -------------------------------------------------- Helicobacter_pylori -------------------------------------------------- Acidobacterium_capsulatum -------------------------------------------------- Holophaga_foetida -------------------------------------------------- Arthrobacter_globiformis -------------------------------------------------- Micrococcus_luteus -------------------------------------------------- Frankia_sp. -------------------------------------------------- Streptomyces_bottropensis -------------------------------------------------- Streptomyces_scabiei -------------------------------------------------- Streptomyces_neyagawaensis -------------------------------------------------- F -------------------------------------------------- Streptomyces_sp. -------------------------------------------------- Streptomyces_acidiscabies -------------------------------------------------- Streptomyces_griseus -------------------------------------------------- Streptomyces_ornatus -------------------------------------------------- Streptomyces_subrutilus -------------------------------------------------- Streptomyces_bikiniensis -------------------------------------------------- Streptomyces_galbus -------------------------------------------------- Streptomyces_hygroscopicus -------------------------------------------------- Streptomyces_lincolnensis -------------------------------------------------- Streptomyces_coelicolor -------------------------------------------------- Streptomyces_tendae -------------------------------------------------- Streptomyces_ambofaciens -------------------------------------------------- Streptomyces_eurythermus -------------------------------------------------- Streptomyces_nodosus -------------------------------------------------- Streptomyces_sampsonii -------------------------------------------------- Streptomyces_glaucescens -------------------------------------------------- Streptomyces_pseudogriseolus -------------------------------------------------- Streptomyces_caelestis -------------------------------------------------- Streptomyces_bluensis -------------------------------------------------- Streptomyces_espinosus -------------------------------------------------- Streptomyces_mashuensis -------------------------------------------------- Streptomyces_rimosus -------------------------------------------------- Streptomyces_limosus -------------------------------------------------- Streptomyces_odorifer -------------------------------------------------- Streptomyces_felleus -------------------------------------------------- Streptomyces_albidoflavus -------------------------------------------------- Streptomyces_gougerotii -------------------------------------------------- Streptomyces_rutgersensis -------------------------------------------------- Streptomyces_intermedius -------------------------------------------------- F -------------------------------------------------- Streptomyces_thermoviolaceus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus -------------------------------------------------- Streptomyces_megasporus -------------------------------------------------- Streptomyces_thermolineatus -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_avium -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides -------------------------------------------------- Rhodococcus_erythropolis -------------------------------------------------- Corynebacterium_diphtheriae -------------------------------------------------- Actinomyces_israelii -------------------------------------------------- Brachyspira_hyodysenteriae -------------------------------------------------- Geotoga_subterranea -------------------------------------------------- Petrotoga_miotherma -------------------------------------------------- Brevinema_andersonii -------------------------------------------------- Herpetosiphon_aurantiacus -------------------------------------------------- F -------------------------------------------------- Aquifex_aeolicus -------------------------------------------------- Aquifex_pyrophilus -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- Thermus_aquaticus -------------------------------------------------- Thermomicrobium_roseum -------------------------------------------------- Pirellula_marina -------------------------------------------------- Pirellula_staleyi -------------------------------------------------- Planctomycetaceae_Schlesner_670 -------------------------------------------------- Gemmata_obscuriglobus -------------------------------------------------- Isosphaera_pallida -------------------------------------------------- Pyrococcus_abyssi -------------------------------------------------- Pyrococcus_horikoshii -------------------------------------------------- Pyrococcus_furiosus -------------------------------------------------- Thermococcus_celer -------------------------------------------------- Archaeoglobus_fulgidus -------------------------------------------------- Nanoarchaeum_equitans -------------------------------------------------- Aeropyrum_pernix_(str._K1) -------------------------------------------------- Pyrodictium_occultum -------------------------------------------------- Thermoproteus_tenax -------------------------------------------------- Sulfolobus_acidocaldarius -------------------------------------------------- Sulfolobus_solfataricus -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum -------------------------------------------------- Methanococcus_vannielii -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -------------------------------------------------- Natronorubrum_bangense -------------------------------------------------- Natronobacterium_innermongoliae -------------------------------------------------- Haloferax_volcanii -------------------------------------------------- Methanospirillum_hungatei -------------------------------------------------- Picrophilus_torridus_DSM_9790 -------------------------------------------------- Thermoplasma_acidophilum -------------------------------------------------- Giardia_ardeae -------------------------------------------------- Giardia_intestinalis -------------------------------------------------- Giardia_muris -------------------------------------------------- Amblyospora_bracteata -------------------------------------------------- Glomus_sp._W3349 -------------------------------------------------- Scutellospora_cerradensis -------------------------------------------------- Glomus_intraradices -------------------------------------------------- Smittium_culisetae -------------------------------------------------- Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus -------------------------------------------------- Tilletia_caries -------------------------------------------------- Mucor_circinelloides_f._lusitanicus -------------------------------------------------- Mucor_racemosus -------------------------------------------------- Rhizopus_oryzae -------------------------------------------------- Mytilus_edulis -------------------------------------------------- Placopecten_magellanicus -------------------------------------------------- Echinococcus_granulosus -------------------------------------------------- Drosophila_melanogaster -------------------------------------------------- Crossodonthina_koreana -------------------------------------------------- Androctonus_australis -------------------------------------------------- Okanagana_utahensis -------------------------------------------------- Artemia_salina -------------------------------------------------- Mus_musculus -------------------------------------------------- Rattus_norvegicus -------------------------------------------------- Homo_sapiens -------------------------------------------------- Oryctolagus_cuniculus -------------------------------------------------- Xenopus_borealis -------------------------------------------------- Xenopus_laevis -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Balamuthia_mandrillaris -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Entamoeba_histolytica -------------------------------------------------- Ichthyophonus_hoferi -------------------------------------------------- Dermocystidium_sp. -------------------------------------------------- Sphaerothecum_destruens -------------------------------------------------- Acanthocoepsis_unguiculata -------------------------------------------------- Diaphanoeca_grandis -------------------------------------------------- Allomyces_macrogynus -------------------------------------------------- Blastocladiella_emersonii -------------------------------------------------- Candida_albicans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Coccidioides_immitis -------------------------------------------------- Leishmania_major -------------------------------------------------- Trypanosoma_cruzi -------------------------------------------------- Trypanosoma_brucei -------------------------------------------------- Pneumocystis_carinii -------------------------------------------------- Cryptococcus_neoformans_var._neoformans -------------------------------------------------- fungal_contaminant_of_QPX_isolate -------------------------------------------------- Ustilago_maydis -------------------------------------------------- Mnemiopsis_leidyi -------------------------------------------------- Tripedalia_cystophora -------------------------------------------------- Microciona_prolifera -------------------------------------------------- Psorospermium_haeckeli -------------------------------------------------- Euglypha_rotunda -------------------------------------------------- Paulinella_chromatophora -------------------------------------------------- Antirrhinum_majus -------------------------------------------------- Sesamum_indicum -------------------------------------------------- Digitalis_grandiflora -------------------------------------------------- Plantago_lanceolata -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Arabidopsis_thaliana -------------------------------------------------- Sinapis_alba -------------------------------------------------- Solanum_tuberosum -------------------------------------------------- Fragaria_x_ananassa -------------------------------------------------- Glycine_max -------------------------------------------------- Oryza_sativa -------------------------------------------------- Zea_mays -------------------------------------------------- F -------------------------------------------------- Genicularia_spirotaenia -------------------------------------------------- F -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- FChlorella'_luteoviridis -------------------------------------------------- Oxytricha_longa -------------------------------------------------- Paraurostyla_weissei -------------------------------------------------- Cyrtohymena_citrina -------------------------------------------------- Gastrostyla_steinii -------------------------------------------------- Pleurotricha_lanceolota -------------------------------------------------- Onychodromus_quadricornutus -------------------------------------------------- Stylonychia_lemnae -------------------------------------------------- Stylonychia_mytilus -------------------------------------------------- Engelmanniella_mobilis -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Uroleptus_gallina -------------------------------------------------- Uroleptus_pisces -------------------------------------------------- Paruroleptus_lepisma -------------------------------------------------- Urostyla_grandis -------------------------------------------------- Balantidium_coli -------------------------------------------------- Euplotes_aediculatus -------------------------------------------------- Tetrahymena_thermophila -------------------------------------------------- Bangia_sp._(Northwest_Territories/NWT) -------------------------------------------------- Bangia_sp._(Virgin_Islands/VIS7) -------------------------------------------------- Erythrotrichia_carnea -------------------------------------------------- Rhodochaete_parvula -------------------------------------------------- Compsopogon_coeruleus -------------------------------------------------- Porphyridium_aerugineum -------------------------------------------------- Rhodella_maculata -------------------------------------------------- Aulacoseira_ambigua -------------------------------------------------- Aulacoseira_baicalensis -------------------------------------------------- Stephanopyxis_nipponica -------------------------------------------------- Coscinodiscus_radiatus -------------------------------------------------- Corethron_criophilum -------------------------------------------------- Amphora_cf._capitellata -------------------------------------------------- Sellaphora_pupula_f._capitata -------------------------------------------------- Thalassiosira_antarctica -------------------------------------------------- Encyonema_triangulatum -------------------------------------------------- Achnanthes_bongranii -------------------------------------------------- F -------------------------------------------------- Diatoma_tenue -------------------------------------------------- Grammatophora_marina -------------------------------------------------- Thalassionema_sp._p474 -------------------------------------------------- Rhaphoneis_belgicae -------------------------------------------------- Undatella_sp._p446 -------------------------------------------------- Cymatosira_belgica -------------------------------------------------- Odontella_sinensis -------------------------------------------------- Ditylum_brightwellii -------------------------------------------------- Lithodesmium_undulatum -------------------------------------------------- Thalassiosira_eccentrica -------------------------------------------------- Thalassiosira_pseudonana -------------------------------------------------- Skeletonema_costatum -------------------------------------------------- Pleurosira_cf._laevis -------------------------------------------------- Lauderia_borealis -------------------------------------------------- F -------------------------------------------------- Bolidomonas_mediterranea -------------------------------------------------- Bolidomonas_pacifica -------------------------------------------------- Labyrinthuloides_minuta -------------------------------------------------- Leptocylindrus_danicus -------------------------------------------------- Chaetoceros_sp. -------------------------------------------------- Aphanomyces_invadans -------------------------------------------------- Lagenidium_giganteum -------------------------------------------------- Melosira_varians -------------------------------------------------- Blastocystis_hominis -------------------------------------------------- Perkinsus_marinus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Alexandrium_fundyense -------------------------------------------------- Babesia_bigemina -------------------------------------------------- Babesia_canis -------------------------------------------------- Babesia_sp._'Oklahoma_dog' -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_rodhaini -------------------------------------------------- Babesia_gibsoni -------------------------------------------------- Babesia_bovis -------------------------------------------------- Jakoba_libera -------------------------------------------------- Reclinomonas_americana -------------------------------------------------- Bonamia_ostreae -------------------------------------------------- Audouinella_dasyae -------------------------------------------------- Audouinella_hermannii -------------------------------------------------- Nemalion_helminthoides -------------------------------------------------- Batrachospermum_gelatinosum -------------------------------------------------- Nemalionopsis_tortuosa -------------------------------------------------- Thorea_hispida -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Nemalionopsis_shawii -------------------------------------------------- Balbiania_investiens -------------------------------------------------- Batrachospermum_macrosporum -------------------------------------------------- Ahnfeltia_plicata -------------------------------------------------- Corallina_officinalis -------------------------------------------------- Rhodogorgon_carriebowensis -------------------------------------------------- Bonnemaisonia_hamifera -------------------------------------------------- Gelidium_vagum -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Halymenia_plana -------------------------------------------------- Rhodymenia_leptophylla -------------------------------------------------- Plocamiocolax_pulvinata -------------------------------------------------- Ceramium_rubrum -------------------------------------------------- Gracilariopsis_sp. -------------------------------------------------- Bostrychia_moritziana -------------------------------------------------- Hildenbrandia_rubra -------------------------------------------------- Dixonielloa_grisea -------------------------------------------------- Naegleria_fowleri AAGGAUACCACCGUUAACUGCAGCGAUAAUACUUGUUCCCUUCGGGGUGG Naegleria_gruberi CAAGGAUACCACCGUUAACUGCAGCGAUAUACUUGUUCCCUUCGGGGUGG Hexamita_sp. -------------------------------------------------- Tritrichomonas_foetus -------------------------------------------------- Amblyospora_khaliulini -------------------------------------------------- Edhazardia_aedis -------------------------------------------------- Amblyospora_connecticus -------------------------------------------------- Intrapredatorus_barri -------------------------------------------------- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. -------------------------------------------------- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii -------------------------------------------------- Weiseria_palustris -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani -------------------------------------------------- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae -------------------------------------------------- Thelohania_solenopsae -------------------------------------------------- Visvesvaria_acridophagus -------------------------------------------------- Bacillidium_sp. -------------------------------------------------- Pseudonosema_cristatellae -------------------------------------------------- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum -------------------------------------------------- Pleistophora_mirandellae -------------------------------------------------- Trachipleistophora_hominis -------------------------------------------------- Vavraia_culicis -------------------------------------------------- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii -------------------------------------------------- F -------------------------------------------------- Dictyocoela_gammarellum -------------------------------------------------- Microsporidium_prosopium -------------------------------------------------- Antonospora_scoticae -------------------------------------------------- Paranosema_whitei -------------------------------------------------- #=GC SS_cons .................................................. Cynomorium_coccineum -------------------------------------------------- Cytinus_ruber -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Spinacia_oleracea -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Ricinus_communis -------------------------------------------------- F -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Pyramimonas_parkeae -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Pilostyles_thurberi -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Penicillium_chrysogenum -------------------------------------------------- Emericella_nidulans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Williopsis_saturnus_var._mrakii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Babesia_bovis -------------------------------------------------- Tetrahymena_pyriformis -------------------------------------------------- Suillus_sinuspaulianus -------------------------------------------------- Paramecium_tetraurelia -------------------------------------------------- Dictyostelium_discoideum -------------------------------------------------- Physarum_polycephalum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Hydnora_africana -------------------------------------------------- Codium_fragile -------------------------------------------------- Caulerpa_sertularioides -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cryptomonas_sp. -------------------------------------------------- Palmaria_palmata -------------------------------------------------- Heterosigma_akashiwo -------------------------------------------------- Skeletonema_pseudocostatum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Cyanidium_caldarium -------------------------------------------------- Emiliania_huxleyi -------------------------------------------------- Euglena_gracilis -------------------------------------------------- Anabaena_sp. -------------------------------------------------- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -------------------------------------------------- F -------------------------------------------------- Oscillatoria_agardhii -------------------------------------------------- Pleurocapsa_sp. -------------------------------------------------- Microcystis_aeruginosa -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos -------------------------------------------------- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Bacillus_anthracis -------------------------------------------------- Bacillus_cereus -------------------------------------------------- Enterococcus_faecalis -------------------------------------------------- Enterococcus_faecium -------------------------------------------------- Listeria_monocytogenes -------------------------------------------------- Bacillus_subtilis -------------------------------------------------- Bacillus_subtilis_A -------------------------------------------------- Bacillus_halodurans -------------------------------------------------- Staphylococcus_aureus -------------------------------------------------- Staphylococcus_aureus_N315 -------------------------------------------------- Lactococcus_lactis_subsp._lactis -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Lactobacillus_acidophilus -------------------------------------------------- Mycoplasma_capricolum -------------------------------------------------- Mycoplasma_mycoides -------------------------------------------------- Erysipelothrix_rhusiopathiae_(alpha-P15) -------------------------------------------------- Clostridium_innocuum -------------------------------------------------- Mycoplasma_genitalium -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_gallisepticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Mycoplasma_hyopneumoniae -------------------------------------------------- Fusobacterium_necrophorum -------------------------------------------------- Fusobacterium_nucleatum_subsp._nucleatum -------------------------------------------------- Streptobacillus_moniliformis -------------------------------------------------- Clostridium_botulinum_type_f -------------------------------------------------- Clostridium_tetani -------------------------------------------------- Clostridium_perfringens -------------------------------------------------- Clostridium_difficile -------------------------------------------------- Eubacterium_brachy -------------------------------------------------- Epulopiscium_sp. -------------------------------------------------- Heliobacterium_chlorum -------------------------------------------------- Glycine_max -------------------------------------------------- Oenothera_berteroana -------------------------------------------------- Secale_cereale -------------------------------------------------- Triticum_aestivum -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Gluconacetobacter_liquefaciens -------------------------------------------------- Bradyrhizobium_japonicum -------------------------------------------------- Rhodoblastus_acidophilus -------------------------------------------------- Azorhizobium_caulinodans -------------------------------------------------- Bartonella_quintana -------------------------------------------------- Mesorhizobium_loti -------------------------------------------------- Agrobacterium_tumefaciens -------------------------------------------------- Bartonella_bacilliformis -------------------------------------------------- Bartonella_henselae -------------------------------------------------- Brucella_melitensis -------------------------------------------------- Rhodobium_orientis -------------------------------------------------- F -------------------------------------------------- Rickettsia_bellii -------------------------------------------------- Rickettsia_felis_URRWXCal2 -------------------------------------------------- Rickettsia_prowazekii -------------------------------------------------- Rickettsia_prowazekii_(str._Madrid_E) -------------------------------------------------- Rickettsia_rickettsii -------------------------------------------------- Acinetobacter_calcoaceticus -------------------------------------------------- Psychrobacter_pacificensis -------------------------------------------------- Chromohalobacter_marismortui -------------------------------------------------- F -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_sp. -------------------------------------------------- Pseudomonas_putida -------------------------------------------------- Coxiella_burnetii -------------------------------------------------- Methylococcus_capsulatus -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Allochromatium_vinosum -------------------------------------------------- Beggiatoa_sp._1401-13 -------------------------------------------------- Aeromonas_hydrophila -------------------------------------------------- Shewanella_putrefaciens -------------------------------------------------- Citrobacter_freundii -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Klebsiella_pneumoniae -------------------------------------------------- Plesiomonas_shigelloides -------------------------------------------------- Yersinia_pestis -------------------------------------------------- F -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Escherichia_coli_O157:H7 -------------------------------------------------- Escherichia_coli_O157:H7_EDL933 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli_K12 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Salmonella_typhimurium -------------------------------------------------- Serratia_marcescens -------------------------------------------------- Edwardsiella_tarda -------------------------------------------------- Proteus_vulgaris -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- F -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae_(operons_A-F) -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Xanthomonas_albilineans -------------------------------------------------- Xanthomonas_campestris -------------------------------------------------- Xylella_fastidiosa -------------------------------------------------- Dichelobacter_nodosus -------------------------------------------------- Francisella_tularensis -------------------------------------------------- Bordetella_parapertussis -------------------------------------------------- Bordetella_pertussis -------------------------------------------------- Bordetella_bronchiseptica -------------------------------------------------- unidentified_proteobacterium -------------------------------------------------- Burkholderia_mallei -------------------------------------------------- Burkholderia_sp. -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -------------------------------------------------- Comamonas_testosteroni -------------------------------------------------- Desulfovibrio_desulfuricans -------------------------------------------------- Myxococcus_xanthus -------------------------------------------------- Deferribacter_thermophilus -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_hermsii -------------------------------------------------- Spirochaeta_aurantia -------------------------------------------------- Treponema_pallidum_(rRNA_A) -------------------------------------------------- Leptonema_illini -------------------------------------------------- Leptospira_interrogans -------------------------------------------------- Chlamydia_trachomatis_D/UW-3/CX -------------------------------------------------- Chlamydia_trachomatis_L2/434/BU -------------------------------------------------- Chlamydia_muridarum -------------------------------------------------- Chlamydophila_pneumoniae_AR39 -------------------------------------------------- Chlamydophila_pneumoniae -------------------------------------------------- Chlamydophila_pneumoniae_J138 -------------------------------------------------- F -------------------------------------------------- Chlamydophila_psittaci -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- Porphyromonas_gingivalis -------------------------------------------------- Prosthecochloris_vibrioformis -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_sputorum -------------------------------------------------- F -------------------------------------------------- Helicobacter_pylori_J99 -------------------------------------------------- Helicobacter_pylori -------------------------------------------------- Acidobacterium_capsulatum -------------------------------------------------- Holophaga_foetida -------------------------------------------------- Arthrobacter_globiformis -------------------------------------------------- Micrococcus_luteus -------------------------------------------------- Frankia_sp. -------------------------------------------------- Streptomyces_bottropensis -------------------------------------------------- Streptomyces_scabiei -------------------------------------------------- Streptomyces_neyagawaensis -------------------------------------------------- F -------------------------------------------------- Streptomyces_sp. -------------------------------------------------- Streptomyces_acidiscabies -------------------------------------------------- Streptomyces_griseus -------------------------------------------------- Streptomyces_ornatus -------------------------------------------------- Streptomyces_subrutilus -------------------------------------------------- Streptomyces_bikiniensis -------------------------------------------------- Streptomyces_galbus -------------------------------------------------- Streptomyces_hygroscopicus -------------------------------------------------- Streptomyces_lincolnensis -------------------------------------------------- Streptomyces_coelicolor -------------------------------------------------- Streptomyces_tendae -------------------------------------------------- Streptomyces_ambofaciens -------------------------------------------------- Streptomyces_eurythermus -------------------------------------------------- Streptomyces_nodosus -------------------------------------------------- Streptomyces_sampsonii -------------------------------------------------- Streptomyces_glaucescens -------------------------------------------------- Streptomyces_pseudogriseolus -------------------------------------------------- Streptomyces_caelestis -------------------------------------------------- Streptomyces_bluensis -------------------------------------------------- Streptomyces_espinosus -------------------------------------------------- Streptomyces_mashuensis -------------------------------------------------- Streptomyces_rimosus -------------------------------------------------- Streptomyces_limosus -------------------------------------------------- Streptomyces_odorifer -------------------------------------------------- Streptomyces_felleus -------------------------------------------------- Streptomyces_albidoflavus -------------------------------------------------- Streptomyces_gougerotii -------------------------------------------------- Streptomyces_rutgersensis -------------------------------------------------- Streptomyces_intermedius -------------------------------------------------- F -------------------------------------------------- Streptomyces_thermoviolaceus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus -------------------------------------------------- Streptomyces_megasporus -------------------------------------------------- Streptomyces_thermolineatus -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_avium -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides -------------------------------------------------- Rhodococcus_erythropolis -------------------------------------------------- Corynebacterium_diphtheriae -------------------------------------------------- Actinomyces_israelii -------------------------------------------------- Brachyspira_hyodysenteriae -------------------------------------------------- Geotoga_subterranea -------------------------------------------------- Petrotoga_miotherma -------------------------------------------------- Brevinema_andersonii -------------------------------------------------- Herpetosiphon_aurantiacus -------------------------------------------------- F -------------------------------------------------- Aquifex_aeolicus -------------------------------------------------- Aquifex_pyrophilus -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- Thermus_aquaticus -------------------------------------------------- Thermomicrobium_roseum -------------------------------------------------- Pirellula_marina -------------------------------------------------- Pirellula_staleyi -------------------------------------------------- Planctomycetaceae_Schlesner_670 -------------------------------------------------- Gemmata_obscuriglobus -------------------------------------------------- Isosphaera_pallida -------------------------------------------------- Pyrococcus_abyssi -------------------------------------------------- Pyrococcus_horikoshii -------------------------------------------------- Pyrococcus_furiosus -------------------------------------------------- Thermococcus_celer -------------------------------------------------- Archaeoglobus_fulgidus -------------------------------------------------- Nanoarchaeum_equitans -------------------------------------------------- Aeropyrum_pernix_(str._K1) -------------------------------------------------- Pyrodictium_occultum -------------------------------------------------- Thermoproteus_tenax -------------------------------------------------- Sulfolobus_acidocaldarius -------------------------------------------------- Sulfolobus_solfataricus -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum -------------------------------------------------- Methanococcus_vannielii -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -------------------------------------------------- Natronorubrum_bangense -------------------------------------------------- Natronobacterium_innermongoliae -------------------------------------------------- Haloferax_volcanii -------------------------------------------------- Methanospirillum_hungatei -------------------------------------------------- Picrophilus_torridus_DSM_9790 -------------------------------------------------- Thermoplasma_acidophilum -------------------------------------------------- Giardia_ardeae -------------------------------------------------- Giardia_intestinalis -------------------------------------------------- Giardia_muris -------------------------------------------------- Amblyospora_bracteata -------------------------------------------------- Glomus_sp._W3349 -------------------------------------------------- Scutellospora_cerradensis -------------------------------------------------- Glomus_intraradices -------------------------------------------------- Smittium_culisetae -------------------------------------------------- Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus -------------------------------------------------- Tilletia_caries -------------------------------------------------- Mucor_circinelloides_f._lusitanicus -------------------------------------------------- Mucor_racemosus -------------------------------------------------- Rhizopus_oryzae -------------------------------------------------- Mytilus_edulis -------------------------------------------------- Placopecten_magellanicus -------------------------------------------------- Echinococcus_granulosus -------------------------------------------------- Drosophila_melanogaster -------------------------------------------------- Crossodonthina_koreana -------------------------------------------------- Androctonus_australis -------------------------------------------------- Okanagana_utahensis -------------------------------------------------- Artemia_salina -------------------------------------------------- Mus_musculus -------------------------------------------------- Rattus_norvegicus -------------------------------------------------- Homo_sapiens -------------------------------------------------- Oryctolagus_cuniculus -------------------------------------------------- Xenopus_borealis -------------------------------------------------- Xenopus_laevis -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Balamuthia_mandrillaris -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Entamoeba_histolytica -------------------------------------------------- Ichthyophonus_hoferi -------------------------------------------------- Dermocystidium_sp. -------------------------------------------------- Sphaerothecum_destruens -------------------------------------------------- Acanthocoepsis_unguiculata -------------------------------------------------- Diaphanoeca_grandis -------------------------------------------------- Allomyces_macrogynus -------------------------------------------------- Blastocladiella_emersonii -------------------------------------------------- Candida_albicans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Coccidioides_immitis -------------------------------------------------- Leishmania_major -------------------------------------------------- Trypanosoma_cruzi -------------------------------------------------- Trypanosoma_brucei -------------------------------------------------- Pneumocystis_carinii -------------------------------------------------- Cryptococcus_neoformans_var._neoformans -------------------------------------------------- fungal_contaminant_of_QPX_isolate -------------------------------------------------- Ustilago_maydis -------------------------------------------------- Mnemiopsis_leidyi -------------------------------------------------- Tripedalia_cystophora -------------------------------------------------- Microciona_prolifera -------------------------------------------------- Psorospermium_haeckeli -------------------------------------------------- Euglypha_rotunda -------------------------------------------------- Paulinella_chromatophora -------------------------------------------------- Antirrhinum_majus -------------------------------------------------- Sesamum_indicum -------------------------------------------------- Digitalis_grandiflora -------------------------------------------------- Plantago_lanceolata -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Arabidopsis_thaliana -------------------------------------------------- Sinapis_alba -------------------------------------------------- Solanum_tuberosum -------------------------------------------------- Fragaria_x_ananassa -------------------------------------------------- Glycine_max -------------------------------------------------- Oryza_sativa -------------------------------------------------- Zea_mays -------------------------------------------------- F -------------------------------------------------- Genicularia_spirotaenia -------------------------------------------------- F -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- FChlorella'_luteoviridis -------------------------------------------------- Oxytricha_longa -------------------------------------------------- Paraurostyla_weissei -------------------------------------------------- Cyrtohymena_citrina -------------------------------------------------- Gastrostyla_steinii -------------------------------------------------- Pleurotricha_lanceolota -------------------------------------------------- Onychodromus_quadricornutus -------------------------------------------------- Stylonychia_lemnae -------------------------------------------------- Stylonychia_mytilus -------------------------------------------------- Engelmanniella_mobilis -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Uroleptus_gallina -------------------------------------------------- Uroleptus_pisces -------------------------------------------------- Paruroleptus_lepisma -------------------------------------------------- Urostyla_grandis -------------------------------------------------- Balantidium_coli -------------------------------------------------- Euplotes_aediculatus -------------------------------------------------- Tetrahymena_thermophila -------------------------------------------------- Bangia_sp._(Northwest_Territories/NWT) -------------------------------------------------- Bangia_sp._(Virgin_Islands/VIS7) -------------------------------------------------- Erythrotrichia_carnea -------------------------------------------------- Rhodochaete_parvula -------------------------------------------------- Compsopogon_coeruleus -------------------------------------------------- Porphyridium_aerugineum -------------------------------------------------- Rhodella_maculata -------------------------------------------------- Aulacoseira_ambigua -------------------------------------------------- Aulacoseira_baicalensis -------------------------------------------------- Stephanopyxis_nipponica -------------------------------------------------- Coscinodiscus_radiatus -------------------------------------------------- Corethron_criophilum -------------------------------------------------- Amphora_cf._capitellata -------------------------------------------------- Sellaphora_pupula_f._capitata -------------------------------------------------- Thalassiosira_antarctica -------------------------------------------------- Encyonema_triangulatum -------------UAACCUGGUUGAUCCUGCCAGUAGUCAUACGCUCGUC Achnanthes_bongranii -------------UAACCUGGUUGAUCCUGCCAGUAGUCAUACGCUCGUC F -------------------------------------------------- Diatoma_tenue -------------UGCCCUGGUUGAUCCUGCCAGUAGUCAUACGCUCGUC Grammatophora_marina -------------UAACCUGGUUGAUCCUGCCAGUAGUCAUACGCUCGUC Thalassionema_sp._p474 -------------UAACCUGGUUGAUCCUGCCAGUAGUCAUACGCUCGUC Rhaphoneis_belgicae -------------UAACCUGGUUGAUCCUGCCAGUAGUCAUACGCUCGUC Undatella_sp._p446 -------------UAACCUGGUUGAUCCUGCCAGUAGUCAUACGCGCGUC Cymatosira_belgica -------------UAACCUGGUUGAUCCUGCCAGUAGUCAUACGCUCGUC Odontella_sinensis -------------UAACCUGGUUGAUCCUGCCAGUAGUCAUACGCUCGUC Ditylum_brightwellii -------------UAACCUGGUUGAUCCUGCCAGUAGUCAUACGCUCGUC Lithodesmium_undulatum -------------UAACCUGGUUGAUCCUGCCAGUAGUCAUACGCUCGUC Thalassiosira_eccentrica -------------UAACCUGGUUGAUCCUGCCAGUAGUCAUACGCUCGUC Thalassiosira_pseudonana -------------UAACCUGGUUGAUCCUGCCAGUAGUCAUACGCUCGUC Skeletonema_costatum -------------UAACCUGGUUGAUCCUGCCAGUAGUCAUACGCUCGUC Pleurosira_cf._laevis -------------UAACCUGGUUGAUCCUGCCAGUAGUCAUACGCUCGUC Lauderia_borealis -------------UAACCUGGUUGAUCCUGCCAGUAGUCAUACGCUCGUC F -------------------------------------------------- Bolidomonas_mediterranea -------------UAACCUGGUUGAUCCUGCCAGUAGUCAUACGCUCGUC Bolidomonas_pacifica -------------UAACCUGGUUGAUCCUGCCAGUAGUCAUACGCUCGUC Labyrinthuloides_minuta -------------UAACCUGGUUGAUCCUGCCAGUAGUCAUACGCUCGUC Leptocylindrus_danicus -------------UAACCUGGUUGAUCCUGCCAGUAAUCAUACGCUCGUC Chaetoceros_sp. -------------UAACCUGGUUGAUCCUGCCAGUAGUCAUACGCUCGUC Aphanomyces_invadans -------------UGCUCUGACCGUGUUGAGAAUAUCGGGUUUCGGUCUC Lagenidium_giganteum -------------UAACCUGGUUGAUCCUGCCAGUAGUCAUACGCUUGUC Melosira_varians -------------UAACCUGGUUGAUCCUGCCAGUAGCGAUACGCUCGUA Blastocystis_hominis -------------GCUUAUCUGGUUGAUCCUGCCAGUAGUCAUACGCUCG Perkinsus_marinus -------------AACCUGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCU Toxoplasma_gondii -------------AACCUGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCU Alexandrium_fundyense -------------AACCUGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCU Babesia_bigemina -------------------------------------------------- Babesia_canis -------------UGCUCUGAAACCUGGUUGAUCCUGCCAGUAGUCAUAU Babesia_sp._'Oklahoma_dog' -------------UGCUCUGACCCCUGGUUGAUCCUGCCAGUAGUCAUAU Babesia_microti -------------UGCUCUGAAACCUGGUUGAUCCUGCCAGUAGUCAUAU Babesia_microti -------------UGCUCUGAAACCUGGUUGAUCCUGCCAGUAGUCAUAU Babesia_microti -------------UGCUCUGAAACCUGGUUGAUCCUGCCAGUAGUCAUAU Babesia_microti -------------UGCUCUGAAACCUGGUUGAUCCUGCCAGUAGUCAUAU Babesia_microti -------------UGCUCUGACCGUGUUGAGAAUCUGCCAGUAGUCAUAU Babesia_rodhaini -------------UGCUCUGAAACCUGGUUGAUCCUGCCAGUAGUCAUAU Babesia_gibsoni -------------UGCUCUGACCGUGUUGAGAAUAUCGCAGUAGUCAUAU Babesia_bovis -------------------------------------------------- Jakoba_libera -------------UAACCUGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUU Reclinomonas_americana -------------UAACCUGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUC Bonamia_ostreae -------------UGCUCGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCU Audouinella_dasyae -------------CAACCUGGUUGAUCCUGCCAGUGGUAUAUGCUUGUCU Audouinella_hermannii -------------CACCUGGUUGAUCCUGCCAGUGGUAUAUGCUUGUCUC Nemalion_helminthoides -------------CAACCUGGUUGAUCCUGCCAGUGGUAUAUGCUUGUCU Batrachospermum_gelatinosum -------------CACCUGGUUGAUCCUGCCAGUGGUAUAUGCUUGUCUC Nemalionopsis_tortuosa -------------AACCUGGUUGAUCCUGCCAGUAGUGAUAUGCUUGUCU Thorea_hispida -------------UGCUCUGACCGUGUUGAGAAUAUUAUAUGCUUGUCUC Thorea_violacea -------------UGCUCUGACCGUGUUGAGAAUAUUAUAUGCUUGUCUC Thorea_violacea -------------CACCUGGUUGAUCCUGCCAGUGGUAUAUGCUUGUCUC Thorea_violacea -------------UGCUCUGACCGUGUUGAGAAUAUUAUAUGCUUGUCUC Nemalionopsis_shawii -------------AGGACUAAGCCAUGCAAGUGUAAGUAUAAGUAAUUUU Balbiania_investiens -------------AGGACUAAGCCAUGCAAGUGUAAGUAUAAGUAAUCUU Batrachospermum_macrosporum -------------AAGGACUAAGCCAUGCAAGUGUAAGUAUAAGUAAUCU Ahnfeltia_plicata -------------AGGACUAAGCCAUGCAAGUGUAAGUAUAAGUGAAUUG Corallina_officinalis -------------AAGACUAAGCCAUGCAAGUCUAAGUAUGAGGAAUAAU Rhodogorgon_carriebowensis -------------GGUAUAUGCUUGUCUCAAGGACUAAGCCAUGCAAGUC Bonnemaisonia_hamifera -------------CAACCUGGUUGAUCCUGCCAGUGGUAUAUGCUUGUCU Gelidium_vagum -------------AACCUGGUUGAUCCUGCCAGUGGUAUAUGCUUGUCUC Chondrus_crispus -------------AGGACUAAGCCAUGCAAGUGUAAGUAUGAGUGAAUUG Halymenia_plana -------------CACCUGGUUGAUCCUGCCAGUGGUAUAUGCUUGUCUC Rhodymenia_leptophylla -------------CAAGGACUAAGCCAUGCAAGUGUAAGUAUGAGUGAAU Plocamiocolax_pulvinata -------------CAAGGACUAAGCCAUGCAAGUCUAAGUAUGAGUGAUU Ceramium_rubrum -------------GGACUAAGCCAUGCAAGUCUAAGUAUGAGUGAAUUGU Gracilariopsis_sp. -------------AGGACUAAGCCAUGCAAGUGCAAGUAUGAGUGUAUUA Bostrychia_moritziana -------------CCUGGUUGAUCCUGCCAGUGGUAUAUGCUUGUCUCAA Hildenbrandia_rubra -------------CAAGGACUAAGCCAUGCAAGUGCCAGUAUGAGUGAAU Dixonielloa_grisea -------------GGUUAAGCCAUGCAAUUGAAAGUUUAAGUGAUUUUCA Naegleria_fowleri UAGUAGUAUUUGUGCUGAAACCUAGCUAUUGUAACUCAGUUUCUCUGGGU Naegleria_gruberi UAAUAGUAUUU--GUGCUGAAGCCUAGCUAUUGUAACCUAGUUUUUCGGG Hexamita_sp. -------------------------------------------------- Tritrichomonas_foetus -------------UGGUUGAUCCUGCCAAGGAAGCACACUUCGGUCAUAG Amblyospora_khaliulini -------------------------------------------------- Edhazardia_aedis -------------------------------------------------- Amblyospora_connecticus -------------------------------------------------- Intrapredatorus_barri -------------------------------------------------- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. -------------------------------------------------- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii -------------------------------------------------- Weiseria_palustris -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani -------------------------------------------------- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae -------------------------------------------------- Thelohania_solenopsae -------------------------------------------------- Visvesvaria_acridophagus -------------------------------------------------- Bacillidium_sp. -------------------------------------------------- Pseudonosema_cristatellae -------------------------------------------------- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum -------------------------------------------------- Pleistophora_mirandellae -------------------------------------------------- Trachipleistophora_hominis -------------------------------------------------- Vavraia_culicis -------------------------------------------------- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii -------------------------------------------------- F -------------------------------------------------- Dictyocoela_gammarellum -------------------------------------------------- Microsporidium_prosopium -------------------------------------------------- Antonospora_scoticae -------------------------------------------------- Paranosema_whitei -------------------------------------------------- #=GC SS_cons .................................................. Cynomorium_coccineum -------------------------------------------------- Cytinus_ruber -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Spinacia_oleracea -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Ricinus_communis -------------------------------------------------- F -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Pyramimonas_parkeae -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Pilostyles_thurberi -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Penicillium_chrysogenum -------------------------------------------------- Emericella_nidulans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Williopsis_saturnus_var._mrakii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Babesia_bovis -------------------------------------------------- Tetrahymena_pyriformis -------------------------------------------------- Suillus_sinuspaulianus -------------------------------------------------- Paramecium_tetraurelia -------------------------------------------------- Dictyostelium_discoideum -------------------------------------------------- Physarum_polycephalum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Hydnora_africana -------------------------------------------------- Codium_fragile -------------------------------------------------- Caulerpa_sertularioides -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cryptomonas_sp. -------------------------------------------------- Palmaria_palmata -------------------------------------------------- Heterosigma_akashiwo -------------------------------------------------- Skeletonema_pseudocostatum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Cyanidium_caldarium -------------------------------------------------- Emiliania_huxleyi -------------------------------------------------- Euglena_gracilis -------------------------------------------------- Anabaena_sp. -------------------------------------------------- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -------------------------------------------------- F -------------------------------------------------- Oscillatoria_agardhii -------------------------------------------------- Pleurocapsa_sp. -------------------------------------------------- Microcystis_aeruginosa -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos -------------------------------------------------- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Bacillus_anthracis -------------------------------------------------- Bacillus_cereus -------------------------------------------------- Enterococcus_faecalis -------------------------------------------------- Enterococcus_faecium -------------------------------------------------- Listeria_monocytogenes -------------------------------------------------- Bacillus_subtilis -------------------------------------------------- Bacillus_subtilis_A -------------------------------------------------- Bacillus_halodurans -------------------------------------------------- Staphylococcus_aureus -------------------------------------------------- Staphylococcus_aureus_N315 -------------------------------------------------- Lactococcus_lactis_subsp._lactis -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Lactobacillus_acidophilus -------------------------------------------------- Mycoplasma_capricolum -------------------------------------------------- Mycoplasma_mycoides -------------------------------------------------- Erysipelothrix_rhusiopathiae_(alpha-P15) -------------------------------------------------- Clostridium_innocuum -------------------------------------------------- Mycoplasma_genitalium -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_gallisepticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Mycoplasma_hyopneumoniae -------------------------------------------------- Fusobacterium_necrophorum -------------------------------------------------- Fusobacterium_nucleatum_subsp._nucleatum -------------------------------------------------- Streptobacillus_moniliformis -------------------------------------------------- Clostridium_botulinum_type_f -------------------------------------------------- Clostridium_tetani -------------------------------------------------- Clostridium_perfringens -------------------------------------------------- Clostridium_difficile -------------------------------------------------- Eubacterium_brachy -------------------------------------------------- Epulopiscium_sp. -------------------------------------------------- Heliobacterium_chlorum -------------------------------------------------- Glycine_max -------------------------------------------------- Oenothera_berteroana -------------------------------------------------- Secale_cereale -------------------------------------------------- Triticum_aestivum -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Gluconacetobacter_liquefaciens -------------------------------------------------- Bradyrhizobium_japonicum -------------------------------------------------- Rhodoblastus_acidophilus -------------------------------------------------- Azorhizobium_caulinodans -------------------------------------------------- Bartonella_quintana -------------------------------------------------- Mesorhizobium_loti -------------------------------------------------- Agrobacterium_tumefaciens -------------------------------------------------- Bartonella_bacilliformis -------------------------------------------------- Bartonella_henselae -------------------------------------------------- Brucella_melitensis -------------------------------------------------- Rhodobium_orientis -------------------------------------------------- F -------------------------------------------------- Rickettsia_bellii -------------------------------------------------- Rickettsia_felis_URRWXCal2 -------------------------------------------------- Rickettsia_prowazekii -------------------------------------------------- Rickettsia_prowazekii_(str._Madrid_E) -------------------------------------------------- Rickettsia_rickettsii -------------------------------------------------- Acinetobacter_calcoaceticus -------------------------------------------------- Psychrobacter_pacificensis -------------------------------------------------- Chromohalobacter_marismortui -------------------------------------------------- F -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_sp. -------------------------------------------------- Pseudomonas_putida -------------------------------------------------- Coxiella_burnetii -------------------------------------------------- Methylococcus_capsulatus -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Allochromatium_vinosum -------------------------------------------------- Beggiatoa_sp._1401-13 -------------------------------------------------- Aeromonas_hydrophila -------------------------------------------------- Shewanella_putrefaciens -------------------------------------------------- Citrobacter_freundii -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Klebsiella_pneumoniae -------------------------------------------------- Plesiomonas_shigelloides -------------------------------------------------- Yersinia_pestis -------------------------------------------------- F -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Escherichia_coli_O157:H7 -------------------------------------------------- Escherichia_coli_O157:H7_EDL933 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli_K12 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Salmonella_typhimurium -------------------------------------------------- Serratia_marcescens -------------------------------------------------- Edwardsiella_tarda -------------------------------------------------- Proteus_vulgaris -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- F -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae_(operons_A-F) -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Xanthomonas_albilineans -------------------------------------------------- Xanthomonas_campestris -------------------------------------------------- Xylella_fastidiosa -------------------------------------------------- Dichelobacter_nodosus -------------------------------------------------- Francisella_tularensis -------------------------------------------------- Bordetella_parapertussis -------------------------------------------------- Bordetella_pertussis -------------------------------------------------- Bordetella_bronchiseptica -------------------------------------------------- unidentified_proteobacterium -------------------------------------------------- Burkholderia_mallei -------------------------------------------------- Burkholderia_sp. -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -------------------------------------------------- Comamonas_testosteroni -------------------------------------------------- Desulfovibrio_desulfuricans -------------------------------------------------- Myxococcus_xanthus -------------------------------------------------- Deferribacter_thermophilus -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_hermsii -------------------------------------------------- Spirochaeta_aurantia -------------------------------------------------- Treponema_pallidum_(rRNA_A) -------------------------------------------------- Leptonema_illini -------------------------------------------------- Leptospira_interrogans -------------------------------------------------- Chlamydia_trachomatis_D/UW-3/CX -------------------------------------------------- Chlamydia_trachomatis_L2/434/BU -------------------------------------------------- Chlamydia_muridarum -------------------------------------------------- Chlamydophila_pneumoniae_AR39 -------------------------------------------------- Chlamydophila_pneumoniae -------------------------------------------------- Chlamydophila_pneumoniae_J138 -------------------------------------------------- F -------------------------------------------------- Chlamydophila_psittaci -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- Porphyromonas_gingivalis -------------------------------------------------- Prosthecochloris_vibrioformis -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_sputorum -------------------------------------------------- F -------------------------------------------------- Helicobacter_pylori_J99 -------------------------------------------------- Helicobacter_pylori -------------------------------------------------- Acidobacterium_capsulatum -------------------------------------------------- Holophaga_foetida -------------------------------------------------- Arthrobacter_globiformis -------------------------------------------------- Micrococcus_luteus -------------------------------------------------- Frankia_sp. -------------------------------------------------- Streptomyces_bottropensis -------------------------------------------------- Streptomyces_scabiei -------------------------------------------------- Streptomyces_neyagawaensis -------------------------------------------------- F -------------------------------------------------- Streptomyces_sp. -------------------------------------------------- Streptomyces_acidiscabies -------------------------------------------------- Streptomyces_griseus -------------------------------------------------- Streptomyces_ornatus -------------------------------------------------- Streptomyces_subrutilus -------------------------------------------------- Streptomyces_bikiniensis -------------------------------------------------- Streptomyces_galbus -------------------------------------------------- Streptomyces_hygroscopicus -------------------------------------------------- Streptomyces_lincolnensis -------------------------------------------------- Streptomyces_coelicolor -------------------------------------------------- Streptomyces_tendae -------------------------------------------------- Streptomyces_ambofaciens -------------------------------------------------- Streptomyces_eurythermus -------------------------------------------------- Streptomyces_nodosus -------------------------------------------------- Streptomyces_sampsonii -------------------------------------------------- Streptomyces_glaucescens -------------------------------------------------- Streptomyces_pseudogriseolus -------------------------------------------------- Streptomyces_caelestis -------------------------------------------------- Streptomyces_bluensis -------------------------------------------------- Streptomyces_espinosus -------------------------------------------------- Streptomyces_mashuensis -------------------------------------------------- Streptomyces_rimosus -------------------------------------------------- Streptomyces_limosus -------------------------------------------------- Streptomyces_odorifer -------------------------------------------------- Streptomyces_felleus -------------------------------------------------- Streptomyces_albidoflavus -------------------------------------------------- Streptomyces_gougerotii -------------------------------------------------- Streptomyces_rutgersensis -------------------------------------------------- Streptomyces_intermedius -------------------------------------------------- F -------------------------------------------------- Streptomyces_thermoviolaceus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus -------------------------------------------------- Streptomyces_megasporus -------------------------------------------------- Streptomyces_thermolineatus -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_avium -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides -------------------------------------------------- Rhodococcus_erythropolis -------------------------------------------------- Corynebacterium_diphtheriae -------------------------------------------------- Actinomyces_israelii -------------------------------------------------- Brachyspira_hyodysenteriae -------------------------------------------------- Geotoga_subterranea -------------------------------------------------- Petrotoga_miotherma -------------------------------------------------- Brevinema_andersonii -------------------------------------------------- Herpetosiphon_aurantiacus -------------------------------------------------- F -------------------------------------------------- Aquifex_aeolicus -------------------------------------------------- Aquifex_pyrophilus -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- Thermus_aquaticus -------------------------------------------------- Thermomicrobium_roseum -------------------------------------------------- Pirellula_marina -------------------------------------------------- Pirellula_staleyi -------------------------------------------------- Planctomycetaceae_Schlesner_670 -------------------------------------------------- Gemmata_obscuriglobus -------------------------------------------------- Isosphaera_pallida -------------------------------------------------- Pyrococcus_abyssi -------------------------------------------------- Pyrococcus_horikoshii -------------------------------------------------- Pyrococcus_furiosus -------------------------------------------------- Thermococcus_celer -------------------------------------------------- Archaeoglobus_fulgidus -------------------------------------------------- Nanoarchaeum_equitans -------------------------------------------------- Aeropyrum_pernix_(str._K1) -------------------------------------------------- Pyrodictium_occultum -------------------------------------------------- Thermoproteus_tenax -------------------------------------------------- Sulfolobus_acidocaldarius -------------------------------------------------- Sulfolobus_solfataricus -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum -------------------------------------------------- Methanococcus_vannielii -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -------------------------------------------------- Natronorubrum_bangense -------------------------------------------------- Natronobacterium_innermongoliae -------------------------------------------------- Haloferax_volcanii -------------------------------------------------- Methanospirillum_hungatei -------------------------------------------------- Picrophilus_torridus_DSM_9790 -------------------------------------------------- Thermoplasma_acidophilum -------------------------------------------------- Giardia_ardeae -------------------------------------------------- Giardia_intestinalis -------------------------------------------------- Giardia_muris -------------------------------------------------- Amblyospora_bracteata -------------------------------------------------- Glomus_sp._W3349 -------------------------------------------------- Scutellospora_cerradensis -------------------------------------------------- Glomus_intraradices -------------------------------------------------- Smittium_culisetae -------------------------------------------------- Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus -------------------------------------------------- Tilletia_caries -------------------------------------------------- Mucor_circinelloides_f._lusitanicus -------------------------------------------------- Mucor_racemosus -------------------------------------------------- Rhizopus_oryzae -------------------------------------------------- Mytilus_edulis -------------------------------------------------- Placopecten_magellanicus -------------------------------------------------- Echinococcus_granulosus -------------------------------------------------- Drosophila_melanogaster -------------------------------------------------- Crossodonthina_koreana -------------------------------------------------- Androctonus_australis -------------------------------------------------- Okanagana_utahensis -------------------------------------------------- Artemia_salina -------------------------------------------------- Mus_musculus -------------------------------------------------- Rattus_norvegicus -------------------------------------------------- Homo_sapiens -------------------------------------------------- Oryctolagus_cuniculus -------------------------------------------------- Xenopus_borealis -------------------------------------------------- Xenopus_laevis -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Balamuthia_mandrillaris -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Entamoeba_histolytica -------------------------------------------------- Ichthyophonus_hoferi -------------------------------------------------- Dermocystidium_sp. -------------------------------------------------- Sphaerothecum_destruens -------------------------------------------------- Acanthocoepsis_unguiculata -------------------------------------------------- Diaphanoeca_grandis -------------------------------------------------- Allomyces_macrogynus -------------------------------------------------- Blastocladiella_emersonii -------------------------------------------------- Candida_albicans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Coccidioides_immitis -------------------------------------------------- Leishmania_major -------------------------------------------------- Trypanosoma_cruzi -------------------------------------------------- Trypanosoma_brucei -------------------------------------------------- Pneumocystis_carinii -------------------------------------------------- Cryptococcus_neoformans_var._neoformans -------------------------------------------------- fungal_contaminant_of_QPX_isolate -------------------------------------------------- Ustilago_maydis -------------------------------------------------- Mnemiopsis_leidyi -------------------------------------------------- Tripedalia_cystophora -------------------------------------------------- Microciona_prolifera -------------------------------------------------- Psorospermium_haeckeli -------------------------------------------------- Euglypha_rotunda -------------------------------------------------- Paulinella_chromatophora -------------------------------------------------- Antirrhinum_majus -------------------------------------------------- Sesamum_indicum -------------------------------------------------- Digitalis_grandiflora -------------------------------------------------- Plantago_lanceolata -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Arabidopsis_thaliana -------------------------------------------------- Sinapis_alba -------------------------------------------------- Solanum_tuberosum -------------------------------------------------- Fragaria_x_ananassa -------------------------------------------------- Glycine_max -------------------------------------------------- Oryza_sativa -------------------------------------------------- Zea_mays -------------------------------------------------- F -------------------------------------------------- Genicularia_spirotaenia -------------------------------------------------- F -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- FChlorella'_luteoviridis -------------------------------------------------- Oxytricha_longa -------------------------------------------------- Paraurostyla_weissei -------------------------------------------------- Cyrtohymena_citrina -------------------------------------------------- Gastrostyla_steinii -------------------------------------------------- Pleurotricha_lanceolota -------------------------------------------------- Onychodromus_quadricornutus -------------------------------------------------- Stylonychia_lemnae -------------------------------------------------- Stylonychia_mytilus -------------------------------------------------- Engelmanniella_mobilis -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Uroleptus_gallina -------------------------------------------------- Uroleptus_pisces -------------------------------------------------- Paruroleptus_lepisma -------------------------------------------------- Urostyla_grandis -------------------------------------------------- Balantidium_coli -------------------------------------------------- Euplotes_aediculatus -------------------------------------------------- Tetrahymena_thermophila -------------------------------------------------- Bangia_sp._(Northwest_Territories/NWT) -------------------------------------------------- Bangia_sp._(Virgin_Islands/VIS7) -------------------------------------------------- Erythrotrichia_carnea -------------------------------------------------- Rhodochaete_parvula -------------------------------------------------- Compsopogon_coeruleus -------------------------------------------------- Porphyridium_aerugineum -------------------------------------------------- Rhodella_maculata -------------------------------------------------- Aulacoseira_ambigua -------------------------------------------------- Aulacoseira_baicalensis -------------------------------------------------- Stephanopyxis_nipponica -------------------------------------------------- Coscinodiscus_radiatus -------------------------------------------------- Corethron_criophilum -------------------------------------------------- Amphora_cf._capitellata -------------------------------------------------- Sellaphora_pupula_f._capitata -------------------------------------------------- Thalassiosira_antarctica -------------------------------------------------- Encyonema_triangulatum UCAAAGAUUAAGCCAUGCACGUCUAAGUAUAAAUAUAUCACUGUGAAACU Achnanthes_bongranii UCAAAGAUUAAGCCAUGCAUGUCUAAGUAUAACUCUUUUACUUGAAAACU F -------------------------------------------------- Diatoma_tenue UCAAAGAUUAAGCCAUGCAUGUCUAAGUAUAAACCUUUUACUUUGAAACU Grammatophora_marina UCAAAGAUUAAGCCAUGCAUGUCUAAGUAUAAAUCUCAUACUUUGAAACU Thalassionema_sp._p474 UCAAAGAUUAAGCCAUGCAUGUCUAAGUAUAAAUGUUUUACUUUGAAACU Rhaphoneis_belgicae UCAAAGAUUAAGCCAUGCAUGUCUAAGUAUAAAUCUCAUACUUUGAAACU Undatella_sp._p446 UCAAAGAUUAAGCCAUGCAUGUCUAAGUAUAAAUCUCUUACUUUGAAACU Cymatosira_belgica UCAAAGAUUAAGCCAUGCAUGUCUAAGUAUAAAUAUUUUACUUUGAAACU Odontella_sinensis UCAAAGAUUAAGCCAUGCAUGUCUAAGUAUAAAUAUUAUACAUUGAAACU Ditylum_brightwellii UCAAAGAUUAAGCCAUGCAUGUCUAAGUAUAAAUAUUUUACUGUGAAACU Lithodesmium_undulatum UCAAAGAUUAAGCCAUGCAUGUCUAAGUAUAAAUACUUUACUGUGAAACU Thalassiosira_eccentrica UCAAAGAUUAAGCCAUGCAUGUCUAAGUAUAACUCUUUUACUUUGAAAAC Thalassiosira_pseudonana UCAAAGAUUAAGCCAUGCAUGUCUAAGUACAACCAUUAUACAGGAAAACU Skeletonema_costatum UCAAAGAUUAAGCCAUGCAUGUGUAAGUAUAAGAUACUUUAUCGAAACUG Pleurosira_cf._laevis UCAAAGAUUAAGCCAUGCAUGUCUAAGUAUAAAUACUUCUACUUUGAAAC Lauderia_borealis UCAAAGAUUAAGCCAUGCAUGUCUAAGUAUAAAUCCUUUACUUUAAAACU F -------------------------------------------------- Bolidomonas_mediterranea UCAAAGAUUAAGCCAUGCAUGUCUAAGUAUAAACGCUUUAUACUGUGAAC Bolidomonas_pacifica UCAAAGAUUAAGCCAUGCAUGUCUAAGUAUAAACGCUUUAUACUGUGAAA Labyrinthuloides_minuta UCAAAGAUUAAGCCAUGCAUGUCUAAGUGCAAGCACUUGUACUGUGAAAC Leptocylindrus_danicus UCAAAGAUUAAGCCAUGCAUGUCUAAGUAUGAAUAUUAUACAGUGAAACU Chaetoceros_sp. UCAAAGAUUAAGCCAUGCAUGUGUAAGUUCAAUGAUUUGACCAAAAAACU Aphanomyces_invadans AAAGAUUAAGCCAUGCAUGUCUAAGUAUAAACAACUUUGUACUGUGAAAC Lagenidium_giganteum UCAAAGAUUAAGCCAUGCAUGUCUAAGUAUAAACAACUUUGUACUGUGAA Melosira_varians UUAAAGAUUAAGCCAUGCAUGUGUCAGUAUAAAACUUUUGUUGAAACUGC Blastocystis_hominis UCUCAAAGAUUAAGCCAUGCAUGUGUAAGUGUAAAUAUACUAGUUUGGAA Perkinsus_marinus CAAAGAUUAAGCCAUGCAUGUCUAAGUAUAAGCUUUAAACGGCGAAACUG Toxoplasma_gondii UAAAGAUUAAGCCAUGCAUGUCUAAGUAUAAGCUUUUAUACGGCUAAACU Alexandrium_fundyense CAAAGAUUAAGCCAUGCAUGUCUUAGUAUAAGCUUCAAUUUUGUGAAACU Babesia_bigemina -------------------------------------------------- Babesia_canis GCUUGUCUCAAAGAUUAAGCCAUGCAUGUCUAAGUACAAGCUUUUUACGG Babesia_sp._'Oklahoma_dog' GCUUGUCUCAAAGAUUAAGCCAUGCAUGUCUAAGUACAAACUUUUUACGG Babesia_microti GCUUGUCUUAAAGAUUAAGCCAUGCAUGUCUUAGUAUAAGCUUUUAUACA Babesia_microti GCUUGUCUUAAAGAUUAAGCCAUGCAUGUCUUAGUAUAAGCUUUUAUACA Babesia_microti GCUUGUCUUAAAGAUUAAGCCAUGCAUGUCUUAGUAUAAGCUUUUAUACA Babesia_microti GCUUGUCUUAAAGAUUAAGCCAUGCAUGUCUUAGUAUAAGCUUUUAUACA Babesia_microti GCUUGUCUUAAAGAUUAAGCCAUGCAUGUCUUAGUAUAAGCUUUUAUACA Babesia_rodhaini GCUUGUCUUAAAGAUUAAGCCAUGCAUGUCUAAGUAUAAGCUUUUAUACA Babesia_gibsoni GCUUGUCUUAAAGAUUAAGCCAUGCAUGUCUAAGUAUAAACUUUUAUAUG Babesia_bovis -------------------------------------------------- Jakoba_libera UCAAAGAUUAAGCCAUGCAUGUCUAAGUAUGAACCACUCAUACGGUGAAA Reclinomonas_americana UCAAGGAUUAAGCCAUGCAUGUCUAAGUAUGAACCUUCAUACGGUGAAAC Bonamia_ostreae CAAAGAUUAAGCCAUGCAUGUCCAAGUAUAAACACGUUUGUACUGUGAAA Audouinella_dasyae CAAGGACUAAGCCAUGCAAGUGUAAGUAUAAGUAAUUUUUACGACGAAAC Audouinella_hermannii AAGGACUAAGCCAUGCAAGUGUAAGUAUAAGUAAUUUUUACGACGAAACU Nemalion_helminthoides CAAGGACUAAGCCAUGCAAGUGUAAGUAUAAGUAAUUUUUACGACGAAAC Batrachospermum_gelatinosum AAGGACUAAGCCAUGCAAGUGUAAGUAUAAGUAAUUUUACGACAAAACUG Nemalionopsis_tortuosa CAAGGACUAAGCCAUGCAAGUGUAAGUAUAAGUAAUUUUUACGACGAAAC Thorea_hispida AAGGACUAAGCCAUGCAAGUGUAAGUAUAAGUUUGAAAAGAUGACGAAAC Thorea_violacea AAGGACUAAGCCAUGCAAGUGUAAGUAUAAGUUUGAAAAGAUGACGAAAC Thorea_violacea AAGGACUAAGCCAUGCAAGUGUAAGUAUAAGUAAU--------------- Thorea_violacea AAGGACUAAGCCAUGCAAGUGUAAGUAUAAGUAAU--------------- Nemalionopsis_shawii UACGACGAAACUGCGAAUGGCUCGGUAAAACAGCU--------------- Balbiania_investiens UACGACGAAACUGCGAAUGGCUCGGUAAAACAGCU--------------- Batrachospermum_macrosporum UACGACGAAACUGCGAAUGGCUCGGUAAAACAGUU--------------- Ahnfeltia_plicata UACAACGAAACUGCGAAUGGCUCGGUAAAACAGCU--------------- Corallina_officinalis UAAGACGAAACUGCGAAUGGCUCGGUAAAACAGCA--------------- Rhodogorgon_carriebowensis UAAGUAUAAGUGAUUCUGAUGACGAAACUGCGAAU--------------- Bonnemaisonia_hamifera CAAGGACUAAGCCAUGCAAGUCUAAGUAUGAGUGA--------------- Gelidium_vagum AAGGACUAAGCCAUGCAAGUGUAAGUAUGAGUGAA--------------- Chondrus_crispus UACAACGAAACUGCGAAUGGCUCGGUAAAACAGCU--------------- Halymenia_plana AAGGACUAAGCCAUGCAAGUGUAAGUAUGAGUGAA--------------- Rhodymenia_leptophylla UGUACAACGAAACUGCGAAUGGCUCGGUAAAACAG--------------- Plocamiocolax_pulvinata UAUACAACGAAACUGCGAAUGGCUCGGUAAAACAG--------------- Ceramium_rubrum ACAACGAAACUGCGAAUGGCUCGGUAAAACAGCUA--------------- Gracilariopsis_sp. UACAACGAAACUGCGAAUGGCUCUGUAAAACAGCU--------------- Bostrychia_moritziana AGACUAAGCCCUGCAAGUGCCUGUAUGAGUGUUUA--------------- Hildenbrandia_rubra UGUACAACGAAACUGCGAAUGGCUCGGUAAAACAG--------------- Dixonielloa_grisea ACUACGAAACUGUGGACAGCUCAUUAAACCAGUUG--------------- Naegleria_fowleri AUAGCAAUAUAUUCAGGGGAGCUGGGCAUCGACCG--------------- Naegleria_gruberi UGUGGCAACAUAUUCGGGGGAUUAGGAAUCGACCG--------------- Hexamita_sp. ----UACCUGGUUGAACCUGCCAGAAGGGCAAGCU--------------- Tritrichomonas_foetus AUUAAGCCAUGCAAGUGUUAGUUCAGGCAACGAAA--------------- Amblyospora_khaliulini -------------------------------------------------- Edhazardia_aedis -------------------------------------------------- Amblyospora_connecticus -------------------------------------------------- Intrapredatorus_barri -------------------------------------------------- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. -------------------------------------------------- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii -------------------------------------------------- Weiseria_palustris -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani -------------------------------------------------- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae -------------------------------------------------- Thelohania_solenopsae -------------------------------------------------- Visvesvaria_acridophagus -------------------------------------------------- Bacillidium_sp. -------------------------------------------------- Pseudonosema_cristatellae -------------------------------------------------- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum -------------------------------------------------- Pleistophora_mirandellae -------------------------------------------------- Trachipleistophora_hominis -------------------------------------------------- Vavraia_culicis -------------------------------------------------- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii -------------------------------------------------- F -------------------------------------------------- Dictyocoela_gammarellum -------------------------------------------------- Microsporidium_prosopium -------------------------------------------------- Antonospora_scoticae -------------------------------------------------- Paranosema_whitei -------------------------------------------------- #=GC SS_cons .................................................. Cynomorium_coccineum -------------------------------------------------- Cytinus_ruber -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Spinacia_oleracea -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Ricinus_communis -------------------------------------------------- F -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Pyramimonas_parkeae -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Pilostyles_thurberi -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Penicillium_chrysogenum -------------------------------------------------- Emericella_nidulans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Williopsis_saturnus_var._mrakii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Babesia_bovis -------------------------------------------------- Tetrahymena_pyriformis -------------------------------------------------- Suillus_sinuspaulianus -------------------------------------------------- Paramecium_tetraurelia -------------------------------------------------- Dictyostelium_discoideum -------------------------------------------------- Physarum_polycephalum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Hydnora_africana -------------------------------------------------- Codium_fragile -------------------------------------------------- Caulerpa_sertularioides -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cryptomonas_sp. -------------------------------------------------- Palmaria_palmata -------------------------------------------------- Heterosigma_akashiwo -------------------------------------------------- Skeletonema_pseudocostatum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Cyanidium_caldarium -------------------------------------------------- Emiliania_huxleyi -------------------------------------------------- Euglena_gracilis -------------------------------------------------- Anabaena_sp. -------------------------------------------------- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -------------------------------------------------- F -------------------------------------------------- Oscillatoria_agardhii -------------------------------------------------- Pleurocapsa_sp. -------------------------------------------------- Microcystis_aeruginosa -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos -------------------------------------------------- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Bacillus_anthracis -------------------------------------------------- Bacillus_cereus -------------------------------------------------- Enterococcus_faecalis -------------------------------------------------- Enterococcus_faecium -------------------------------------------------- Listeria_monocytogenes -------------------------------------------------- Bacillus_subtilis -------------------------------------------------- Bacillus_subtilis_A -------------------------------------------------- Bacillus_halodurans -------------------------------------------------- Staphylococcus_aureus -------------------------------------------------- Staphylococcus_aureus_N315 -------------------------------------------------- Lactococcus_lactis_subsp._lactis -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Lactobacillus_acidophilus -------------------------------------------------- Mycoplasma_capricolum -------------------------------------------------- Mycoplasma_mycoides -------------------------------------------------- Erysipelothrix_rhusiopathiae_(alpha-P15) -------------------------------------------------- Clostridium_innocuum -------------------------------------------------- Mycoplasma_genitalium -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_gallisepticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Mycoplasma_hyopneumoniae -------------------------------------------------- Fusobacterium_necrophorum -------------------------------------------------- Fusobacterium_nucleatum_subsp._nucleatum -------------------------------------------------- Streptobacillus_moniliformis -------------------------------------------------- Clostridium_botulinum_type_f -------------------------------------------------- Clostridium_tetani -------------------------------------------------- Clostridium_perfringens -------------------------------------------------- Clostridium_difficile -------------------------------------------------- Eubacterium_brachy -------------------------------------------------- Epulopiscium_sp. -------------------------------------------------- Heliobacterium_chlorum -------------------------------------------------- Glycine_max -------------------------------------------------- Oenothera_berteroana -------------------------------------------------- Secale_cereale -------------------------------------------------- Triticum_aestivum -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Gluconacetobacter_liquefaciens -------------------------------------------------- Bradyrhizobium_japonicum -------------------------------------------------- Rhodoblastus_acidophilus -------------------------------------------------- Azorhizobium_caulinodans -------------------------------------------------- Bartonella_quintana -------------------------------------------------- Mesorhizobium_loti -------------------------------------------------- Agrobacterium_tumefaciens -------------------------------------------------- Bartonella_bacilliformis -------------------------------------------------- Bartonella_henselae -------------------------------------------------- Brucella_melitensis -------------------------------------------------- Rhodobium_orientis -------------------------------------------------- F -------------------------------------------------- Rickettsia_bellii -------------------------------------------------- Rickettsia_felis_URRWXCal2 -------------------------------------------------- Rickettsia_prowazekii -------------------------------------------------- Rickettsia_prowazekii_(str._Madrid_E) -------------------------------------------------- Rickettsia_rickettsii -------------------------------------------------- Acinetobacter_calcoaceticus -------------------------------------------------- Psychrobacter_pacificensis -------------------------------------------------- Chromohalobacter_marismortui -------------------------------------------------- F -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_sp. -------------------------------------------------- Pseudomonas_putida -------------------------------------------------- Coxiella_burnetii -------------------------------------------------- Methylococcus_capsulatus -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Allochromatium_vinosum -------------------------------------------------- Beggiatoa_sp._1401-13 -------------------------------------------------- Aeromonas_hydrophila -------------------------------------------------- Shewanella_putrefaciens -------------------------------------------------- Citrobacter_freundii -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Klebsiella_pneumoniae -------------------------------------------------- Plesiomonas_shigelloides -------------------------------------------------- Yersinia_pestis -------------------------------------------------- F -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Escherichia_coli_O157:H7 -------------------------------------------------- Escherichia_coli_O157:H7_EDL933 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli_K12 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Salmonella_typhimurium -------------------------------------------------- Serratia_marcescens -------------------------------------------------- Edwardsiella_tarda -------------------------------------------------- Proteus_vulgaris -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- F -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae_(operons_A-F) -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Xanthomonas_albilineans -------------------------------------------------- Xanthomonas_campestris -------------------------------------------------- Xylella_fastidiosa -------------------------------------------------- Dichelobacter_nodosus -------------------------------------------------- Francisella_tularensis -------------------------------------------------- Bordetella_parapertussis -------------------------------------------------- Bordetella_pertussis -------------------------------------------------- Bordetella_bronchiseptica -------------------------------------------------- unidentified_proteobacterium -------------------------------------------------- Burkholderia_mallei -------------------------------------------------- Burkholderia_sp. -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -------------------------------------------------- Comamonas_testosteroni -------------------------------------------------- Desulfovibrio_desulfuricans -------------------------------------------------- Myxococcus_xanthus -------------------------------------------------- Deferribacter_thermophilus -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_hermsii -------------------------------------------------- Spirochaeta_aurantia -------------------------------------------------- Treponema_pallidum_(rRNA_A) -------------------------------------------------- Leptonema_illini -------------------------------------------------- Leptospira_interrogans -------------------------------------------------- Chlamydia_trachomatis_D/UW-3/CX -------------------------------------------------- Chlamydia_trachomatis_L2/434/BU -------------------------------------------------- Chlamydia_muridarum -------------------------------------------------- Chlamydophila_pneumoniae_AR39 -------------------------------------------------- Chlamydophila_pneumoniae -------------------------------------------------- Chlamydophila_pneumoniae_J138 -------------------------------------------------- F -------------------------------------------------- Chlamydophila_psittaci -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- Porphyromonas_gingivalis -------------------------------------------------- Prosthecochloris_vibrioformis -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_sputorum -------------------------------------------------- F -------------------------------------------------- Helicobacter_pylori_J99 -------------------------------------------------- Helicobacter_pylori -------------------------------------------------- Acidobacterium_capsulatum -------------------------------------------------- Holophaga_foetida -------------------------------------------------- Arthrobacter_globiformis -------------------------------------------------- Micrococcus_luteus -------------------------------------------------- Frankia_sp. -------------------------------------------------- Streptomyces_bottropensis -------------------------------------------------- Streptomyces_scabiei -------------------------------------------------- Streptomyces_neyagawaensis -------------------------------------------------- F -------------------------------------------------- Streptomyces_sp. -------------------------------------------------- Streptomyces_acidiscabies -------------------------------------------------- Streptomyces_griseus -------------------------------------------------- Streptomyces_ornatus -------------------------------------------------- Streptomyces_subrutilus -------------------------------------------------- Streptomyces_bikiniensis -------------------------------------------------- Streptomyces_galbus -------------------------------------------------- Streptomyces_hygroscopicus -------------------------------------------------- Streptomyces_lincolnensis -------------------------------------------------- Streptomyces_coelicolor -------------------------------------------------- Streptomyces_tendae -------------------------------------------------- Streptomyces_ambofaciens -------------------------------------------------- Streptomyces_eurythermus -------------------------------------------------- Streptomyces_nodosus -------------------------------------------------- Streptomyces_sampsonii -------------------------------------------------- Streptomyces_glaucescens -------------------------------------------------- Streptomyces_pseudogriseolus -------------------------------------------------- Streptomyces_caelestis -------------------------------------------------- Streptomyces_bluensis -------------------------------------------------- Streptomyces_espinosus -------------------------------------------------- Streptomyces_mashuensis -------------------------------------------------- Streptomyces_rimosus -------------------------------------------------- Streptomyces_limosus -------------------------------------------------- Streptomyces_odorifer -------------------------------------------------- Streptomyces_felleus -------------------------------------------------- Streptomyces_albidoflavus -------------------------------------------------- Streptomyces_gougerotii -------------------------------------------------- Streptomyces_rutgersensis -------------------------------------------------- Streptomyces_intermedius -------------------------------------------------- F -------------------------------------------------- Streptomyces_thermoviolaceus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus -------------------------------------------------- Streptomyces_megasporus -------------------------------------------------- Streptomyces_thermolineatus -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_avium -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides -------------------------------------------------- Rhodococcus_erythropolis -------------------------------------------------- Corynebacterium_diphtheriae -------------------------------------------------- Actinomyces_israelii -------------------------------------------------- Brachyspira_hyodysenteriae -------------------------------------------------- Geotoga_subterranea -------------------------------------------------- Petrotoga_miotherma -------------------------------------------------- Brevinema_andersonii -------------------------------------------------- Herpetosiphon_aurantiacus -------------------------------------------------- F -------------------------------------------------- Aquifex_aeolicus -------------------------------------------------- Aquifex_pyrophilus -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- Thermus_aquaticus -------------------------------------------------- Thermomicrobium_roseum -------------------------------------------------- Pirellula_marina -------------------------------------------------- Pirellula_staleyi -------------------------------------------------- Planctomycetaceae_Schlesner_670 -------------------------------------------------- Gemmata_obscuriglobus -------------------------------------------------- Isosphaera_pallida -------------------------------------------------- Pyrococcus_abyssi -------------------------------------------------- Pyrococcus_horikoshii -------------------------------------------------- Pyrococcus_furiosus -------------------------------------------------- Thermococcus_celer -------------------------------------------------- Archaeoglobus_fulgidus -------------------------------------------------- Nanoarchaeum_equitans -------------------------------------------------- Aeropyrum_pernix_(str._K1) -------------------------------------------------- Pyrodictium_occultum -------------------------------------------------- Thermoproteus_tenax -------------------------------------------------- Sulfolobus_acidocaldarius -------------------------------------------------- Sulfolobus_solfataricus -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum -------------------------------------------------- Methanococcus_vannielii -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -------------------------------------------------- Natronorubrum_bangense -------------------------------------------------- Natronobacterium_innermongoliae -------------------------------------------------- Haloferax_volcanii -------------------------------------------------- Methanospirillum_hungatei -------------------------------------------------- Picrophilus_torridus_DSM_9790 -------------------------------------------------- Thermoplasma_acidophilum -------------------------------------------------- Giardia_ardeae -------------------------------------------------- Giardia_intestinalis -------------------------------------------------- Giardia_muris -------------------------------------------------- Amblyospora_bracteata -------------------------------------------------- Glomus_sp._W3349 -------------------------------------------------- Scutellospora_cerradensis -------------------------------------------------- Glomus_intraradices -------------------------------------------------- Smittium_culisetae -------------------------------------------------- Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus -------------------------------------------------- Tilletia_caries -------------------------------------------------- Mucor_circinelloides_f._lusitanicus -------------------------------------------------- Mucor_racemosus -------------------------------------------------- Rhizopus_oryzae -------------------------------------------------- Mytilus_edulis -------------------------------------------------- Placopecten_magellanicus -------------------------------------------------- Echinococcus_granulosus -------------------------------------------------- Drosophila_melanogaster -------------------------------------------------- Crossodonthina_koreana -------------------------------------------------- Androctonus_australis -------------------------------------------------- Okanagana_utahensis -------------------------------------------------- Artemia_salina -------------------------------------------------- Mus_musculus -------------------------------------------------- Rattus_norvegicus -------------------------------------------------- Homo_sapiens -------------------------------------------------- Oryctolagus_cuniculus -------------------------------------------------- Xenopus_borealis -------------------------------------------------- Xenopus_laevis -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Balamuthia_mandrillaris -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Entamoeba_histolytica -------------------------------------------------- Ichthyophonus_hoferi -------------------------------------------------- Dermocystidium_sp. -------------------------------------------------- Sphaerothecum_destruens -------------------------------------------------- Acanthocoepsis_unguiculata -------------------------------------------------- Diaphanoeca_grandis -------------------------------------------------- Allomyces_macrogynus -------------------------------------------------- Blastocladiella_emersonii -------------------------------------------------- Candida_albicans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Coccidioides_immitis -------------------------------------------------- Leishmania_major -------------------------------------------------- Trypanosoma_cruzi -------------------------------------------------- Trypanosoma_brucei -------------------------------------------------- Pneumocystis_carinii -------------------------------------------------- Cryptococcus_neoformans_var._neoformans -------------------------------------------------- fungal_contaminant_of_QPX_isolate -------------------------------------------------- Ustilago_maydis -------------------------------------------------- Mnemiopsis_leidyi -------------------------------------------------- Tripedalia_cystophora -------------------------------------------------- Microciona_prolifera -------------------------------------------------- Psorospermium_haeckeli -------------------------------------------------- Euglypha_rotunda -------------------------------------------------- Paulinella_chromatophora -------------------------------------------------- Antirrhinum_majus -------------------------------------------------- Sesamum_indicum -------------------------------------------------- Digitalis_grandiflora -------------------------------------------------- Plantago_lanceolata -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Arabidopsis_thaliana -------------------------------------------------- Sinapis_alba -------------------------------------------------- Solanum_tuberosum ----------------------------------------------UACC Fragaria_x_ananassa ----------------------------------------------UACC Glycine_max ----------------------------------------------UACU Oryza_sativa ----------------------------------------------UACC Zea_mays ----------------------------------------------UACC F -------------------------------------------------- Genicularia_spirotaenia ----------------------------------------------AACC F -------------------------------------------------- Cyanophora_paradoxa ----------------------------------------------AACC Glaucocystis_nostochinearum ----------------------------------------------AACC Gloeochaete_wittrockiana ----------------------------------------------AACC FChlorella'_luteoviridis ----------------------------------------------AACC Oxytricha_longa ----------------------------------------------AACC Paraurostyla_weissei ----------------------------------------------AACC Cyrtohymena_citrina ----------------------------------------------AACC Gastrostyla_steinii ----------------------------------------------AACC Pleurotricha_lanceolota ----------------------------------------------AACC Onychodromus_quadricornutus ----------------------------------------------AACC Stylonychia_lemnae ----------------------------------------------AACC Stylonychia_mytilus ----------------------------------------------AACC Engelmanniella_mobilis ----------------------------------------------AACC Oxytricha_granulifera ----------------------------------------------AACC Oxytricha_granulifera ----------------------------------------------AACC Uroleptus_gallina ----------------------------------------------AACC Uroleptus_pisces ----------------------------------------------AACC Paruroleptus_lepisma ----------------------------------------------AACC Urostyla_grandis ----------------------------------------------AACC Balantidium_coli ----------------------------------------------A--- Euplotes_aediculatus ----------------------------------------------AAUC Tetrahymena_thermophila ----------------------------------------------AACC Bangia_sp._(Northwest_Territories/NWT) ----------------------------------------------CAAC Bangia_sp._(Virgin_Islands/VIS7) ----------------------------------------------CAAC Erythrotrichia_carnea ----------------------------------------------CAAC Rhodochaete_parvula ----------------------------------------------UGCU Compsopogon_coeruleus ----------------------------------------------UGCU Porphyridium_aerugineum ----------------------------------------------UAAC Rhodella_maculata ----------------------------------------------UGCU Aulacoseira_ambigua ----------------------------------------------UAAC Aulacoseira_baicalensis ----------------------------------------------UAAC Stephanopyxis_nipponica ----------------------------------------------UAAC Coscinodiscus_radiatus ----------------------------------------------UAAC Corethron_criophilum ----------------------------------------------UAAC Amphora_cf._capitellata ----------------------------------------------UAAC Sellaphora_pupula_f._capitata ----------------------------------------------UGCU Thalassiosira_antarctica ----------------------------------------------UAAC Encyonema_triangulatum GCGAAUGGCUCAUUAUAUCAGUUA----------------------U--- Achnanthes_bongranii GCGAACGGCUCAUUAUAUCAGUUA----------------------U--- F -------------------------------------------------- Diatoma_tenue GCGAACGGCUCAUUAUAUCAGUUA----------------------U--- Grammatophora_marina GCGAAUGGCUCAUUAUAUCAGUUA----------------------U--- Thalassionema_sp._p474 GCGAACGGCUCAUUAUAUCAGUUA----------------------U--- Rhaphoneis_belgicae GCGAAUGGCUCAUUAUAUCAGUUA----------------------U--- Undatella_sp._p446 GCGAACGGCUCAUUAUAUCAGUUA----------------------U--- Cymatosira_belgica GCGAACGGCUCAUUAUAUCAGUUA----------------------U--- Odontella_sinensis GCGAAUGGCUCAUUAUAUCAGUUA----------------------U--- Ditylum_brightwellii GCGAAUGGCUCAUUAUAUCAGUUA----------------------U--- Lithodesmium_undulatum GCGAAUGGCUCAUUAUAUCAGUAA----------------------U--- Thalassiosira_eccentrica UGCGAACGGCUCAUUAUAUCAGUUA---------------------U--- Thalassiosira_pseudonana GCGAACGGCUCAUUAUAUCAGUUA----------------------U--- Skeletonema_costatum CGGACGGCUCAUUAUAUCAGUUA-----------------------U--- Pleurosira_cf._laevis UGCGAAUGGCUCAUUAUAUCAGUUA---------------------U--- Lauderia_borealis GCGAACGGCUCAUUAUAUCAGUUA----------------------U--- F -------------------------------------------------- Bolidomonas_mediterranea CUGCGGAUGGAUCAUUAUAUCAGUUA--------------------U--- Bolidomonas_pacifica CUGCGAAUGGCUCAUUAUAUCAGUUAUAGUUUAUUUGAUAAUCUCUU--- Labyrinthuloides_minuta UGCGAAUGGCUCAUUAUAUCAGUUA---------------------U--- Leptocylindrus_danicus GCGAAUGGCUCAUUAUAUCAGUUU----------------------U--- Chaetoceros_sp. GCGAAUGGCUCAUUAUAUCAGUUA----------------------U--- Aphanomyces_invadans UGCGAAUGGCUCAUUAUAUCAGUUA---------------------U--- Lagenidium_giganteum ACUGCGAAUGGCUCAUUAUAUCAGUUA-------------------U--- Melosira_varians GAAUGGCUCAUUAUAACAGUU-------------------------A--- Blastocystis_hominis CUGCGAAUGGCUCAUUAUAUCAGUU---------------------A--- Perkinsus_marinus CGAAUGGCUCAUUAAAACAGUUA-----------------------U--- Toxoplasma_gondii GCGAAUGGCUCAUUAAAACAGUU-----------------------A--- Alexandrium_fundyense GCAAAUGGCUCAUUAAAACAGUC-----------------------A--- Babesia_bigemina -------------------------------------------------- Babesia_canis UGAAACUGCGAAUGGCUCAU--------------------------U--- Babesia_sp._'Oklahoma_dog' UG--------------------------------------------A--- Babesia_microti GCGAAACUGCGAAUGGCUCAUUAAAACAGU----------------U--- Babesia_microti GCGAAACUGCGAAUGGCUCAUUAAAACAGU----------------U--- Babesia_microti GCGAAACUGCGAAUGGCUCAUUAAAACAGU----------------U--- Babesia_microti GCGAAACUGCGAAUGGCUCAUUAAAACAGU----------------U--- Babesia_microti GCGAAACUGCGAAUGGCUCAUUAAAACAGU----------------U--- Babesia_rodhaini GCGAAACUGCGAAUGGCUCAUUAAAACAGU----------------U--- Babesia_gibsoni GUGAAACUGCGAAUGGCUCAUUAAAACAGUU---------------A--- Babesia_bovis -------------------------------------------------- Jakoba_libera CUGCGAACGGCUCAUUACAACAGUUAUCAUU---------------U--- Reclinomonas_americana UGCGAACGGCUCAUUACAACAGUUAU--------------------C--- Bonamia_ostreae CUG-------------------------------------------C--- Audouinella_dasyae UGCGAAUGGCUCGGUAAAACAGCU----------------------A--- Audouinella_hermannii GCGAAUGGCUCGGUAAAACAGCU-----------------------A--- Nemalion_helminthoides UGCGAAUGGCUCGGUAAAACAGCU----------------------A--- Batrachospermum_gelatinosum CGAAUGGCUCGGUAAAACAGCU------------------------A--- Nemalionopsis_tortuosa UGCGAAUGGCUCGGUAAAACAGCU----------------------A--- Thorea_hispida UGCGAAUGGCUCGGUAAAACAGCUA---------------------U--- Thorea_violacea UGCGAAUGGCUCGGUAAAACAGCUA---------------------U--- Thorea_violacea ----------------------------------------------U--- Thorea_violacea ----------------------------------------------U--- Nemalionopsis_shawii ----------------------------------------------A--- Balbiania_investiens ----------------------------------------------A--- Batrachospermum_macrosporum ----------------------------------------------A--- Ahnfeltia_plicata ----------------------------------------------A--- Corallina_officinalis ----------------------------------------------A--- Rhodogorgon_carriebowensis ----------------------------------------------G--- Bonnemaisonia_hamifera ----------------------------------------------A--- Gelidium_vagum ----------------------------------------------U--- Chondrus_crispus ----------------------------------------------A--- Halymenia_plana ----------------------------------------------U--- Rhodymenia_leptophylla ----------------------------------------------C--- Plocamiocolax_pulvinata ----------------------------------------------C--- Ceramium_rubrum ----------------------------------------------U--- Gracilariopsis_sp. ----------------------------------------------A--- Bostrychia_moritziana ----------------------------------------------U--- Hildenbrandia_rubra ----------------------------------------------C--- Dixonielloa_grisea ----------------------------------------------U--- Naegleria_fowleri ----------------------------------------------C--- Naegleria_gruberi ----------------------------------------------C--- Hexamita_sp. ----------------------------------------------A--- Tritrichomonas_foetus ----------------------------------------------C--- Amblyospora_khaliulini -------------------------------------------------- Edhazardia_aedis -------------------------------------------------- Amblyospora_connecticus -------------------------------------------------- Intrapredatorus_barri -------------------------------------------------- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. -------------------------------------------------- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii -------------------------------------------------- Weiseria_palustris -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani -------------------------------------------------- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae -------------------------------------------------- Thelohania_solenopsae -------------------------------------------------- Visvesvaria_acridophagus -------------------------------------------------- Bacillidium_sp. -------------------------------------------------- Pseudonosema_cristatellae -------------------------------------------------- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum -------------------------------------------------- Pleistophora_mirandellae -------------------------------------------------- Trachipleistophora_hominis -------------------------------------------------- Vavraia_culicis -------------------------------------------------- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii -------------------------------------------------- F -------------------------------------------------- Dictyocoela_gammarellum -------------------------------------------------- Microsporidium_prosopium -------------------------------------------------- Antonospora_scoticae -------------------------------------------------- Paranosema_whitei -------------------------------------------------- #=GC SS_cons .................................................. Cynomorium_coccineum -------------------------------------------------- Cytinus_ruber -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Spinacia_oleracea -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Ricinus_communis -------------------------------------------------- F -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Pyramimonas_parkeae -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Pilostyles_thurberi -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Penicillium_chrysogenum -------------------------------------------------- Emericella_nidulans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Williopsis_saturnus_var._mrakii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Babesia_bovis -------------------------------------------------- Tetrahymena_pyriformis -------------------------------------------------- Suillus_sinuspaulianus -------------------------------------------------- Paramecium_tetraurelia -------------------------------------------------- Dictyostelium_discoideum -------------------------------------------------- Physarum_polycephalum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Hydnora_africana -------------------------------------------------- Codium_fragile -------------------------------------------------- Caulerpa_sertularioides -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cryptomonas_sp. -------------------------------------------------- Palmaria_palmata -------------------------------------------------- Heterosigma_akashiwo -------------------------------------------------- Skeletonema_pseudocostatum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Cyanidium_caldarium -------------------------------------------------- Emiliania_huxleyi -------------------------------------------------- Euglena_gracilis -------------------------------------------------- Anabaena_sp. -------------------------------------------------- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -------------------------------------------------- F -------------------------------------------------- Oscillatoria_agardhii -------------------------------------------------- Pleurocapsa_sp. -------------------------------------------------- Microcystis_aeruginosa -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos -------------------------------------------------- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Bacillus_anthracis -------------------------------------------------- Bacillus_cereus -------------------------------------------------- Enterococcus_faecalis -------------------------------------------------- Enterococcus_faecium -------------------------------------------------- Listeria_monocytogenes -------------------------------------------------- Bacillus_subtilis -------------------------------------------------- Bacillus_subtilis_A -------------------------------------------------- Bacillus_halodurans -------------------------------------------------- Staphylococcus_aureus -------------------------------------------------- Staphylococcus_aureus_N315 -------------------------------------------------- Lactococcus_lactis_subsp._lactis -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Lactobacillus_acidophilus -------------------------------------------------- Mycoplasma_capricolum -------------------------------------------------- Mycoplasma_mycoides -------------------------------------------------- Erysipelothrix_rhusiopathiae_(alpha-P15) -------------------------------------------------- Clostridium_innocuum -------------------------------------------------- Mycoplasma_genitalium -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_gallisepticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Mycoplasma_hyopneumoniae -------------------------------------------------- Fusobacterium_necrophorum -------------------------------------------------- Fusobacterium_nucleatum_subsp._nucleatum -------------------------------------------------- Streptobacillus_moniliformis -------------------------------------------------- Clostridium_botulinum_type_f -------------------------------------------------- Clostridium_tetani -------------------------------------------------- Clostridium_perfringens -------------------------------------------------- Clostridium_difficile -------------------------------------------------- Eubacterium_brachy -------------------------------------------------- Epulopiscium_sp. -------------------------------------------------- Heliobacterium_chlorum -------------------------------------------------- Glycine_max -------------------------------------------------- Oenothera_berteroana -------------------------------------------------- Secale_cereale -------------------------------------------------- Triticum_aestivum -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Gluconacetobacter_liquefaciens -------------------------------------------------- Bradyrhizobium_japonicum -------------------------------------------------- Rhodoblastus_acidophilus -------------------------------------------------- Azorhizobium_caulinodans -------------------------------------------------- Bartonella_quintana -------------------------------------------------- Mesorhizobium_loti -------------------------------------------------- Agrobacterium_tumefaciens -------------------------------------------------- Bartonella_bacilliformis -------------------------------------------------- Bartonella_henselae -------------------------------------------------- Brucella_melitensis -------------------------------------------------- Rhodobium_orientis -------------------------------------------------- F -------------------------------------------------- Rickettsia_bellii -------------------------------------------------- Rickettsia_felis_URRWXCal2 -------------------------------------------------- Rickettsia_prowazekii -------------------------------------------------- Rickettsia_prowazekii_(str._Madrid_E) -------------------------------------------------- Rickettsia_rickettsii -------------------------------------------------- Acinetobacter_calcoaceticus -------------------------------------------------- Psychrobacter_pacificensis -------------------------------------------------- Chromohalobacter_marismortui -------------------------------------------------- F -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_sp. -------------------------------------------------- Pseudomonas_putida -------------------------------------------------- Coxiella_burnetii -------------------------------------------------- Methylococcus_capsulatus -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Allochromatium_vinosum -------------------------------------------------- Beggiatoa_sp._1401-13 -------------------------------------------------- Aeromonas_hydrophila -------------------------------------------------- Shewanella_putrefaciens -------------------------------------------------- Citrobacter_freundii -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Klebsiella_pneumoniae -------------------------------------------------- Plesiomonas_shigelloides -------------------------------------------------- Yersinia_pestis -------------------------------------------------- F -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Escherichia_coli_O157:H7 -------------------------------------------------- Escherichia_coli_O157:H7_EDL933 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli_K12 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Salmonella_typhimurium -------------------------------------------------- Serratia_marcescens -------------------------------------------------- Edwardsiella_tarda -------------------------------------------------- Proteus_vulgaris -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- F -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae_(operons_A-F) -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Xanthomonas_albilineans -------------------------------------------------- Xanthomonas_campestris -------------------------------------------------- Xylella_fastidiosa -------------------------------------------------- Dichelobacter_nodosus -------------------------------------------------- Francisella_tularensis -------------------------------------------------- Bordetella_parapertussis -------------------------------------------------- Bordetella_pertussis -------------------------------------------------- Bordetella_bronchiseptica -------------------------------------------------- unidentified_proteobacterium -------------------------------------------------- Burkholderia_mallei -------------------------------------------------- Burkholderia_sp. -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -------------------------------------------------- Comamonas_testosteroni -------------------------------------------------- Desulfovibrio_desulfuricans -------------------------------------------------- Myxococcus_xanthus -------------------------------------------------- Deferribacter_thermophilus -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_hermsii -------------------------------------------------- Spirochaeta_aurantia -------------------------------------------------- Treponema_pallidum_(rRNA_A) -------------------------------------------------- Leptonema_illini -------------------------------------------------- Leptospira_interrogans -------------------------------------------------- Chlamydia_trachomatis_D/UW-3/CX -------------------------------------------------- Chlamydia_trachomatis_L2/434/BU -------------------------------------------------- Chlamydia_muridarum -------------------------------------------------- Chlamydophila_pneumoniae_AR39 -------------------------------------------------- Chlamydophila_pneumoniae -------------------------------------------------- Chlamydophila_pneumoniae_J138 -------------------------------------------------- F -------------------------------------------------- Chlamydophila_psittaci -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- Porphyromonas_gingivalis -------------------------------------------------- Prosthecochloris_vibrioformis -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_sputorum -------------------------------------------------- F -------------------------------------------------- Helicobacter_pylori_J99 -------------------------------------------------- Helicobacter_pylori -------------------------------------------------- Acidobacterium_capsulatum -------------------------------------------------- Holophaga_foetida -------------------------------------------------- Arthrobacter_globiformis -------------------------------------------------- Micrococcus_luteus -------------------------------------------------- Frankia_sp. -------------------------------------------------- Streptomyces_bottropensis -------------------------------------------------- Streptomyces_scabiei -------------------------------------------------- Streptomyces_neyagawaensis -------------------------------------------------- F -------------------------------------------------- Streptomyces_sp. -------------------------------------------------- Streptomyces_acidiscabies -------------------------------------------------- Streptomyces_griseus -------------------------------------------------- Streptomyces_ornatus -------------------------------------------------- Streptomyces_subrutilus -------------------------------------------------- Streptomyces_bikiniensis -------------------------------------------------- Streptomyces_galbus -------------------------------------------------- Streptomyces_hygroscopicus -------------------------------------------------- Streptomyces_lincolnensis -------------------------------------------------- Streptomyces_coelicolor -------------------------------------------------- Streptomyces_tendae -------------------------------------------------- Streptomyces_ambofaciens -------------------------------------------------- Streptomyces_eurythermus -------------------------------------------------- Streptomyces_nodosus -------------------------------------------------- Streptomyces_sampsonii -------------------------------------------------- Streptomyces_glaucescens -------------------------------------------------- Streptomyces_pseudogriseolus -------------------------------------------------- Streptomyces_caelestis -------------------------------------------------- Streptomyces_bluensis -------------------------------------------------- Streptomyces_espinosus -------------------------------------------------- Streptomyces_mashuensis -------------------------------------------------- Streptomyces_rimosus -------------------------------------------------- Streptomyces_limosus -------------------------------------------------- Streptomyces_odorifer -------------------------------------------------- Streptomyces_felleus -------------------------------------------------- Streptomyces_albidoflavus -------------------------------------------------- Streptomyces_gougerotii -------------------------------------------------- Streptomyces_rutgersensis -------------------------------------------------- Streptomyces_intermedius -------------------------------------------------- F -------------------------------------------------- Streptomyces_thermoviolaceus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus -------------------------------------------------- Streptomyces_megasporus -------------------------------------------------- Streptomyces_thermolineatus -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_avium -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides -------------------------------------------------- Rhodococcus_erythropolis -------------------------------------------------- Corynebacterium_diphtheriae -------------------------------------------------- Actinomyces_israelii -------------------------------------------------- Brachyspira_hyodysenteriae -------------------------------------------------- Geotoga_subterranea -------------------------------------------------- Petrotoga_miotherma -------------------------------------------------- Brevinema_andersonii -------------------------------------------------- Herpetosiphon_aurantiacus -------------------------------------------------- F -------------------------------------------------- Aquifex_aeolicus -------------------------------------------------- Aquifex_pyrophilus -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- Thermus_aquaticus -------------------------------------------------- Thermomicrobium_roseum -------------------------------------------------- Pirellula_marina -------------------------------------------------- Pirellula_staleyi -------------------------------------------------- Planctomycetaceae_Schlesner_670 -------------------------------------------------- Gemmata_obscuriglobus -------------------------------------------------- Isosphaera_pallida -------------------------------------------------- Pyrococcus_abyssi -------------------------------------------------- Pyrococcus_horikoshii -------------------------------------------------- Pyrococcus_furiosus -------------------------------------------------- Thermococcus_celer -------------------------------------------------- Archaeoglobus_fulgidus -------------------------------------------------- Nanoarchaeum_equitans -------------------------------------------------- Aeropyrum_pernix_(str._K1) -------------------------------------------------- Pyrodictium_occultum -------------------------------------------------- Thermoproteus_tenax -------------------------------------------------- Sulfolobus_acidocaldarius -------------------------------------------------- Sulfolobus_solfataricus -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum -------------------------------------------------- Methanococcus_vannielii -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -------------------------------------------------- Natronorubrum_bangense -------------------------------------------------- Natronobacterium_innermongoliae -------------------------------------------------- Haloferax_volcanii -------------------------------------------------- Methanospirillum_hungatei -------------------------------------------------- Picrophilus_torridus_DSM_9790 -------------------------------------------------- Thermoplasma_acidophilum -------------------------------------------------- Giardia_ardeae -------------------------------------------------- Giardia_intestinalis -------------------------------------------------- Giardia_muris -------------------------------------------------- Amblyospora_bracteata -------------------------------------------------- Glomus_sp._W3349 -------------------------------------------------- Scutellospora_cerradensis -------------------------------------------------- Glomus_intraradices -------------------------------------------------- Smittium_culisetae -------------------------------------------------- Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus -------------------------------------------------- Tilletia_caries -------------------------------------------------- Mucor_circinelloides_f._lusitanicus -------------------------------------------------- Mucor_racemosus -------------------------------------------------- Rhizopus_oryzae -------------------------------------------------- Mytilus_edulis -------------------------------------------------- Placopecten_magellanicus -------------------------------------------------- Echinococcus_granulosus -------------------------------------------------- Drosophila_melanogaster -------------------------------------------------- Crossodonthina_koreana -------------------------------------------------- Androctonus_australis -------------------------------------------------- Okanagana_utahensis -------------------------------------------------- Artemia_salina -------------------------------------------------- Mus_musculus -------------------------------------------------- Rattus_norvegicus -------------------------------------------------- Homo_sapiens -------------------------------------------------- Oryctolagus_cuniculus -------------------------------------------------- Xenopus_borealis -------------------------------------------------- Xenopus_laevis -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Balamuthia_mandrillaris -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Entamoeba_histolytica -------------------------------------------------- Ichthyophonus_hoferi -------------------------------------------------- Dermocystidium_sp. -------------------------------------------------- Sphaerothecum_destruens -------------------------------------------------- Acanthocoepsis_unguiculata -------------------------------------------------- Diaphanoeca_grandis -------------------------------------------------- Allomyces_macrogynus -------------------------------------------------- Blastocladiella_emersonii -------------------------------------------------- Candida_albicans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Coccidioides_immitis -------------------------------------------------- Leishmania_major -------------------------------------------------- Trypanosoma_cruzi -------------------------------------------------- Trypanosoma_brucei -------------------------------------------------- Pneumocystis_carinii -------------------------------------------------- Cryptococcus_neoformans_var._neoformans -------------------------------------------------- fungal_contaminant_of_QPX_isolate -------------------------------------------------- Ustilago_maydis -------------------------------------------------- Mnemiopsis_leidyi -------------------------------------------------- Tripedalia_cystophora -------------------------------------------------- Microciona_prolifera -------------------------------------------------- Psorospermium_haeckeli -------------------------------------------------- Euglypha_rotunda -------------------------------------------------- Paulinella_chromatophora -------------------------------------------------- Antirrhinum_majus -------------------------------------------------- Sesamum_indicum -------------------------------------------------- Digitalis_grandiflora -------------------------------------------------- Plantago_lanceolata -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Arabidopsis_thaliana -------------------------------------------------- Sinapis_alba -------------------------------------------------- Solanum_tuberosum UGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGC Fragaria_x_ananassa UGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGC Glycine_max UGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGC Oryza_sativa UGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGC Zea_mays UGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGC F -------------------------------------------------- Genicularia_spirotaenia UGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGC F -------------------------------------------------- Cyanophora_paradoxa UGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGC Glaucocystis_nostochinearum UGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGC Gloeochaete_wittrockiana UGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAACCCAUGC FChlorella'_luteoviridis UGGUUGAUCCUGCCAGUAGUCAUAUGCUCGUCUCAAAGAUUAAGCCAUGC Oxytricha_longa UGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGACUAAGCCAUGC Paraurostyla_weissei UGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGACUAAGCCAUGC Cyrtohymena_citrina UGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGACUAAGCCAUGC Gastrostyla_steinii UGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGACUAAGCCAUGC Pleurotricha_lanceolota UGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGACUAAGCCAUGC Onychodromus_quadricornutus UGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGACUAAGCCAUGC Stylonychia_lemnae UGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGACUAAGCCAUGC Stylonychia_mytilus UGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGACUAAGCCAUGC Engelmanniella_mobilis UGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGACUAAGCCAUGC Oxytricha_granulifera UGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGACUAAGCCAUGC Oxytricha_granulifera UGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGACUAAGCCAUGC Uroleptus_gallina UGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGACUAAGCCAUGC Uroleptus_pisces UGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGACUAAGCCAUGC Paruroleptus_lepisma UGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGACUAAGCCAUGC Urostyla_grandis UGGUUGAUCCUGCCAGUAGUCAUACGCUUGUCUCAAAGACUAAGCCAUGC Balantidium_coli -------------------------------------------------- Euplotes_aediculatus UGGUUGAUCCUGCCAGUAGUCAUACGCUUGUCUCAAGGAUUAAGCCAUGC Tetrahymena_thermophila UGGUUGAUCCUGCCAGUUACAUAUGCUUGUCUUAAAUAUUAACCCAUGCA Bangia_sp._(Northwest_Territories/NWT) CUGAUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGACUAAGCCAUG Bangia_sp._(Virgin_Islands/VIS7) CUGAUUGAUCCUGCCAGUAGUCAUACGCUCGUCUCAAAGAUUAAGCCAUG Erythrotrichia_carnea CUGGUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGC Rhodochaete_parvula CUGACCGUGUUGAGAAUAUCGGGUUGCUUGUCUCAAAGAUUAAGCCAUGC Compsopogon_coeruleus CGGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUG Porphyridium_aerugineum CUGGUUGAUCCUGCCAGUUAUGAUAUGCUUGUCUCAAAGAUUAAGCCAUG Rhodella_maculata CUGAGGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGC Aulacoseira_ambigua CUGGUUGAUCCUGCCAGUAGUGAUACGCUGUCAUUAAGACUAAGCCAUGC Aulacoseira_baicalensis CUGGUUGAUCCUGCCAGUAGUGAUACGCUGUCAUUAAGGACUAAGCCAUG Stephanopyxis_nipponica CUGGUUGAUCCUGCCAGUAGUGAUACGCUCGCAUUUAAGAUUAAGCCAUG Coscinodiscus_radiatus CUGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUG Corethron_criophilum CUGGUUGAUCCUGCCAGUAGUCAUACGCUCGGCUCAAAGAUUAAGCCAUG Amphora_cf._capitellata CUGGUUGAUCCUGCCAGUAGUCAUACGCUCGUCUCAAAGACUAAGCCAUG Sellaphora_pupula_f._capitata CUGGUUGAUCCUGCCAGUAGUCAUACGCUCGUCUCAAAGAUUAAGCCAUG Thalassiosira_antarctica CUGGUUGAUCCUGCCAGUAGUCAUACGCUCGUCUCAAAGAUUAAGCCAUG Encyonema_triangulatum -------------------------------------------------- Achnanthes_bongranii -------------------------------------------------- F -------------------------------------------------- Diatoma_tenue -------------------------------------------------- Grammatophora_marina -------------------------------------------------- Thalassionema_sp._p474 -------------------------------------------------- Rhaphoneis_belgicae -------------------------------------------------- Undatella_sp._p446 -------------------------------------------------- Cymatosira_belgica -------------------------------------------------- Odontella_sinensis -------------------------------------------------- Ditylum_brightwellii -------------------------------------------------- Lithodesmium_undulatum -------------------------------------------------- Thalassiosira_eccentrica -------------------------------------------------- Thalassiosira_pseudonana -------------------------------------------------- Skeletonema_costatum -------------------------------------------------- Pleurosira_cf._laevis -------------------------------------------------- Lauderia_borealis -------------------------------------------------- F -------------------------------------------------- Bolidomonas_mediterranea -------------------------------------------------- Bolidomonas_pacifica -------------------------------------------------- Labyrinthuloides_minuta -------------------------------------------------- Leptocylindrus_danicus -------------------------------------------------- Chaetoceros_sp. -------------------------------------------------- Aphanomyces_invadans -------------------------------------------------- Lagenidium_giganteum -------------------------------------------------- Melosira_varians -------------------------------------------------- Blastocystis_hominis -------------------------------------------------- Perkinsus_marinus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Alexandrium_fundyense -------------------------------------------------- Babesia_bigemina -------------------------------------------------- Babesia_canis -------------------------------------------------- Babesia_sp._'Oklahoma_dog' -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_rodhaini -------------------------------------------------- Babesia_gibsoni -------------------------------------------------- Babesia_bovis -------------------------------------------------- Jakoba_libera -------------------------------------------------- Reclinomonas_americana -------------------------------------------------- Bonamia_ostreae -------------------------------------------------- Audouinella_dasyae -------------------------------------------------- Audouinella_hermannii -------------------------------------------------- Nemalion_helminthoides -------------------------------------------------- Batrachospermum_gelatinosum -------------------------------------------------- Nemalionopsis_tortuosa -------------------------------------------------- Thorea_hispida -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Nemalionopsis_shawii -------------------------------------------------- Balbiania_investiens -------------------------------------------------- Batrachospermum_macrosporum -------------------------------------------------- Ahnfeltia_plicata -------------------------------------------------- Corallina_officinalis -------------------------------------------------- Rhodogorgon_carriebowensis -------------------------------------------------- Bonnemaisonia_hamifera -------------------------------------------------- Gelidium_vagum -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Halymenia_plana -------------------------------------------------- Rhodymenia_leptophylla -------------------------------------------------- Plocamiocolax_pulvinata -------------------------------------------------- Ceramium_rubrum -------------------------------------------------- Gracilariopsis_sp. -------------------------------------------------- Bostrychia_moritziana -------------------------------------------------- Hildenbrandia_rubra -------------------------------------------------- Dixonielloa_grisea -------------------------------------------------- Naegleria_fowleri -------------------------------------------------- Naegleria_gruberi -------------------------------------------------- Hexamita_sp. -------------------------------------------------- Tritrichomonas_foetus -------------------------------------------------- Amblyospora_khaliulini -------------------------------------------------- Edhazardia_aedis -------------------------------------------------- Amblyospora_connecticus -------------------------------------------------- Intrapredatorus_barri -------------------------------------------------- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. -------------------------------------------------- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii -------------------------------------------------- Weiseria_palustris -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani -------------------------------------------------- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae -------------------------------------------------- Thelohania_solenopsae -------------------------------------------------- Visvesvaria_acridophagus -------------------------------------------------- Bacillidium_sp. -------------------------------------------------- Pseudonosema_cristatellae -------------------------------------------------- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum -------------------------------------------------- Pleistophora_mirandellae -------------------------------------------------- Trachipleistophora_hominis -------------------------------------------------- Vavraia_culicis -------------------------------------------------- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii -------------------------------------------------- F -------------------------------------------------- Dictyocoela_gammarellum -------------------------------------------------- Microsporidium_prosopium -------------------------------------------------- Antonospora_scoticae -------------------------------------------------- Paranosema_whitei -------------------------------------------------- #=GC SS_cons .................................................. Cynomorium_coccineum -------------------------------------------------- Cytinus_ruber -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Spinacia_oleracea -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Ricinus_communis -------------------------------------------------- F -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Pyramimonas_parkeae -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Pilostyles_thurberi -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Penicillium_chrysogenum -------------------------------------------------- Emericella_nidulans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Williopsis_saturnus_var._mrakii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Babesia_bovis -------------------------------------------------- Tetrahymena_pyriformis -------------------------------------------------- Suillus_sinuspaulianus -------------------------------------------------- Paramecium_tetraurelia -------------------------------------------------- Dictyostelium_discoideum -------------------------------------------------- Physarum_polycephalum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Hydnora_africana -------------------------------------------------- Codium_fragile -------------------------------------------------- Caulerpa_sertularioides -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cryptomonas_sp. -------------------------------------------------- Palmaria_palmata -------------------------------------------------- Heterosigma_akashiwo -------------------------------------------------- Skeletonema_pseudocostatum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Cyanidium_caldarium -------------------------------------------------- Emiliania_huxleyi -------------------------------------------------- Euglena_gracilis -------------------------------------------------- Anabaena_sp. -------------------------------------------------- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -------------------------------------------------- F -------------------------------------------------- Oscillatoria_agardhii -------------------------------------------------- Pleurocapsa_sp. -------------------------------------------------- Microcystis_aeruginosa -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos -------------------------------------------------- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Bacillus_anthracis -------------------------------------------------- Bacillus_cereus -------------------------------------------------- Enterococcus_faecalis -------------------------------------------------- Enterococcus_faecium -------------------------------------------------- Listeria_monocytogenes -------------------------------------------------- Bacillus_subtilis -------------------------------------------------- Bacillus_subtilis_A -------------------------------------------------- Bacillus_halodurans -------------------------------------------------- Staphylococcus_aureus -------------------------------------------------- Staphylococcus_aureus_N315 -------------------------------------------------- Lactococcus_lactis_subsp._lactis -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Lactobacillus_acidophilus -------------------------------------------------- Mycoplasma_capricolum -------------------------------------------------- Mycoplasma_mycoides -------------------------------------------------- Erysipelothrix_rhusiopathiae_(alpha-P15) -------------------------------------------------- Clostridium_innocuum -------------------------------------------------- Mycoplasma_genitalium -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_gallisepticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Mycoplasma_hyopneumoniae -------------------------------------------------- Fusobacterium_necrophorum -------------------------------------------------- Fusobacterium_nucleatum_subsp._nucleatum -------------------------------------------------- Streptobacillus_moniliformis -------------------------------------------------- Clostridium_botulinum_type_f -------------------------------------------------- Clostridium_tetani -------------------------------------------------- Clostridium_perfringens -------------------------------------------------- Clostridium_difficile -------------------------------------------------- Eubacterium_brachy -------------------------------------------------- Epulopiscium_sp. -------------------------------------------------- Heliobacterium_chlorum -------------------------------------------------- Glycine_max -------------------------------------------------- Oenothera_berteroana -------------------------------------------------- Secale_cereale -------------------------------------------------- Triticum_aestivum -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Gluconacetobacter_liquefaciens -------------------------------------------------- Bradyrhizobium_japonicum -------------------------------------------------- Rhodoblastus_acidophilus -------------------------------------------------- Azorhizobium_caulinodans -------------------------------------------------- Bartonella_quintana -------------------------------------------------- Mesorhizobium_loti -------------------------------------------------- Agrobacterium_tumefaciens -------------------------------------------------- Bartonella_bacilliformis -------------------------------------------------- Bartonella_henselae -------------------------------------------------- Brucella_melitensis -------------------------------------------------- Rhodobium_orientis -------------------------------------------------- F -------------------------------------------------- Rickettsia_bellii -------------------------------------------------- Rickettsia_felis_URRWXCal2 -------------------------------------------------- Rickettsia_prowazekii -------------------------------------------------- Rickettsia_prowazekii_(str._Madrid_E) -------------------------------------------------- Rickettsia_rickettsii -------------------------------------------------- Acinetobacter_calcoaceticus -------------------------------------------------- Psychrobacter_pacificensis -------------------------------------------------- Chromohalobacter_marismortui -------------------------------------------------- F -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_sp. -------------------------------------------------- Pseudomonas_putida -------------------------------------------------- Coxiella_burnetii -------------------------------------------------- Methylococcus_capsulatus -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Allochromatium_vinosum -------------------------------------------------- Beggiatoa_sp._1401-13 -------------------------------------------------- Aeromonas_hydrophila -------------------------------------------------- Shewanella_putrefaciens -------------------------------------------------- Citrobacter_freundii -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Klebsiella_pneumoniae -------------------------------------------------- Plesiomonas_shigelloides -------------------------------------------------- Yersinia_pestis -------------------------------------------------- F -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Escherichia_coli_O157:H7 -------------------------------------------------- Escherichia_coli_O157:H7_EDL933 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli_K12 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Salmonella_typhimurium -------------------------------------------------- Serratia_marcescens -------------------------------------------------- Edwardsiella_tarda -------------------------------------------------- Proteus_vulgaris -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- F -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae_(operons_A-F) -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Xanthomonas_albilineans -------------------------------------------------- Xanthomonas_campestris -------------------------------------------------- Xylella_fastidiosa -------------------------------------------------- Dichelobacter_nodosus -------------------------------------------------- Francisella_tularensis -------------------------------------------------- Bordetella_parapertussis -------------------------------------------------- Bordetella_pertussis -------------------------------------------------- Bordetella_bronchiseptica -------------------------------------------------- unidentified_proteobacterium -------------------------------------------------- Burkholderia_mallei -------------------------------------------------- Burkholderia_sp. -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -------------------------------------------------- Comamonas_testosteroni -------------------------------------------------- Desulfovibrio_desulfuricans -------------------------------------------------- Myxococcus_xanthus -------------------------------------------------- Deferribacter_thermophilus -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_hermsii -------------------------------------------------- Spirochaeta_aurantia -------------------------------------------------- Treponema_pallidum_(rRNA_A) -------------------------------------------------- Leptonema_illini -------------------------------------------------- Leptospira_interrogans -------------------------------------------------- Chlamydia_trachomatis_D/UW-3/CX -------------------------------------------------- Chlamydia_trachomatis_L2/434/BU -------------------------------------------------- Chlamydia_muridarum -------------------------------------------------- Chlamydophila_pneumoniae_AR39 -------------------------------------------------- Chlamydophila_pneumoniae -------------------------------------------------- Chlamydophila_pneumoniae_J138 -------------------------------------------------- F -------------------------------------------------- Chlamydophila_psittaci -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- Porphyromonas_gingivalis -------------------------------------------------- Prosthecochloris_vibrioformis -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_sputorum -------------------------------------------------- F -------------------------------------------------- Helicobacter_pylori_J99 -------------------------------------------------- Helicobacter_pylori -------------------------------------------------- Acidobacterium_capsulatum -------------------------------------------------- Holophaga_foetida -------------------------------------------------- Arthrobacter_globiformis -------------------------------------------------- Micrococcus_luteus -------------------------------------------------- Frankia_sp. -------------------------------------------------- Streptomyces_bottropensis -------------------------------------------------- Streptomyces_scabiei -------------------------------------------------- Streptomyces_neyagawaensis -------------------------------------------------- F -------------------------------------------------- Streptomyces_sp. -------------------------------------------------- Streptomyces_acidiscabies -------------------------------------------------- Streptomyces_griseus -------------------------------------------------- Streptomyces_ornatus -------------------------------------------------- Streptomyces_subrutilus -------------------------------------------------- Streptomyces_bikiniensis -------------------------------------------------- Streptomyces_galbus -------------------------------------------------- Streptomyces_hygroscopicus -------------------------------------------------- Streptomyces_lincolnensis -------------------------------------------------- Streptomyces_coelicolor -------------------------------------------------- Streptomyces_tendae -------------------------------------------------- Streptomyces_ambofaciens -------------------------------------------------- Streptomyces_eurythermus -------------------------------------------------- Streptomyces_nodosus -------------------------------------------------- Streptomyces_sampsonii -------------------------------------------------- Streptomyces_glaucescens -------------------------------------------------- Streptomyces_pseudogriseolus -------------------------------------------------- Streptomyces_caelestis -------------------------------------------------- Streptomyces_bluensis -------------------------------------------------- Streptomyces_espinosus -------------------------------------------------- Streptomyces_mashuensis -------------------------------------------------- Streptomyces_rimosus -------------------------------------------------- Streptomyces_limosus -------------------------------------------------- Streptomyces_odorifer -------------------------------------------------- Streptomyces_felleus -------------------------------------------------- Streptomyces_albidoflavus -------------------------------------------------- Streptomyces_gougerotii -------------------------------------------------- Streptomyces_rutgersensis -------------------------------------------------- Streptomyces_intermedius -------------------------------------------------- F -------------------------------------------------- Streptomyces_thermoviolaceus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus -------------------------------------------------- Streptomyces_megasporus -------------------------------------------------- Streptomyces_thermolineatus -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_avium -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides -------------------------------------------------- Rhodococcus_erythropolis -------------------------------------------------- Corynebacterium_diphtheriae -------------------------------------------------- Actinomyces_israelii -------------------------------------------------- Brachyspira_hyodysenteriae -------------------------------------------------- Geotoga_subterranea -------------------------------------------------- Petrotoga_miotherma -------------------------------------------------- Brevinema_andersonii -------------------------------------------------- Herpetosiphon_aurantiacus -------------------------------------------------- F -------------------------------------------------- Aquifex_aeolicus -------------------------------------------------- Aquifex_pyrophilus -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- Thermus_aquaticus -------------------------------------------------- Thermomicrobium_roseum -------------------------------------------------- Pirellula_marina -------------------------------------------------- Pirellula_staleyi -------------------------------------------------- Planctomycetaceae_Schlesner_670 -------------------------------------------------- Gemmata_obscuriglobus -------------------------------------------------- Isosphaera_pallida -------------------------------------------------- Pyrococcus_abyssi -------------------------------------------------- Pyrococcus_horikoshii -------------------------------------------------- Pyrococcus_furiosus -------------------------------------------------- Thermococcus_celer -------------------------------------------------- Archaeoglobus_fulgidus -------------------------------------------------- Nanoarchaeum_equitans -------------------------------------------------- Aeropyrum_pernix_(str._K1) -------------------------------------------------- Pyrodictium_occultum -------------------------------------------------- Thermoproteus_tenax -------------------------------------------------- Sulfolobus_acidocaldarius -------------------------------------------------- Sulfolobus_solfataricus -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum -------------------------------------------------- Methanococcus_vannielii -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -------------------------------------------------- Natronorubrum_bangense -------------------------------------------------- Natronobacterium_innermongoliae -------------------------------------------------- Haloferax_volcanii -------------------------------------------------- Methanospirillum_hungatei -------------------------------------------------- Picrophilus_torridus_DSM_9790 -------------------------------------------------- Thermoplasma_acidophilum -------------------------------------------------- Giardia_ardeae -------------------------------------------------- Giardia_intestinalis -------------------------------------------------- Giardia_muris -------------------------------------------------- Amblyospora_bracteata -------------------------------------------------- Glomus_sp._W3349 -------------------------------------------------- Scutellospora_cerradensis -------------------------------------------------- Glomus_intraradices -------------------------------------------------- Smittium_culisetae -------------------------------------------------- Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus -------------------------------------------------- Tilletia_caries -------------------------------------------------- Mucor_circinelloides_f._lusitanicus -------------------------------------------------- Mucor_racemosus -------------------------------------------------- Rhizopus_oryzae -------------------------------------------------- Mytilus_edulis -------------------------------------------------- Placopecten_magellanicus -------------------------------------------------- Echinococcus_granulosus -------------------------------------------------- Drosophila_melanogaster -------------------------------------------------- Crossodonthina_koreana -------------------------------------------------- Androctonus_australis -------------------------------------------------- Okanagana_utahensis -------------------------------------------------- Artemia_salina -------------------------------------------------- Mus_musculus -------------------------------------------------- Rattus_norvegicus -------------------------------------------------- Homo_sapiens -------------------------------------------------- Oryctolagus_cuniculus -------------------------------------------------- Xenopus_borealis -------------------------------------------------- Xenopus_laevis -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Balamuthia_mandrillaris -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Entamoeba_histolytica -------------------------------------------------- Ichthyophonus_hoferi -------------------------------------------------- Dermocystidium_sp. -------------------------------------------------- Sphaerothecum_destruens -------------------------------------------------- Acanthocoepsis_unguiculata -------------------------------------------------- Diaphanoeca_grandis -------------------------------------------------- Allomyces_macrogynus -------------------------------------------------- Blastocladiella_emersonii -------------------------------------------------- Candida_albicans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Coccidioides_immitis -------------------------------------------------- Leishmania_major -------------------------------------------------- Trypanosoma_cruzi -------------------------------------------------- Trypanosoma_brucei -------------------------------------------------- Pneumocystis_carinii -------------------------------------------------- Cryptococcus_neoformans_var._neoformans -------------------------------------------------- fungal_contaminant_of_QPX_isolate -------------------------------------------------- Ustilago_maydis -------------------------------------------------- Mnemiopsis_leidyi -------------------------------------------------- Tripedalia_cystophora -------------------------------------------------- Microciona_prolifera -------------------------------------------------- Psorospermium_haeckeli -------------------------------------------------- Euglypha_rotunda -------------------------------------------------- Paulinella_chromatophora -------------------------------------------------- Antirrhinum_majus -------------------------------------------------- Sesamum_indicum -------------------------------------------------- Digitalis_grandiflora -------------------------------------------------- Plantago_lanceolata -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Arabidopsis_thaliana -------------------------------------------------- Sinapis_alba -------------------------------------------------- Solanum_tuberosum AUGUGUAAGUAUGAACAAAUUCAGACUGUGAAACUGCGAAUGGCUCAUAA Fragaria_x_ananassa AUGUGUAAGUAUGAACUAAUUCAGACUGUGAAACUGCGAAUGGCUCAUUA Glycine_max AUGUGUAAGUAUGAACUAAUUCAGACUGUGAAACUGCGAAUGGCUCAUUA Oryza_sativa AUGUGCAAGUAUGAACUAAUUCGAACUGUGAAACUGCGAAUGGCUCAUUA Zea_mays AUGUGCAAGUAUGAACUAAUUCGAACUGUGAAACUGCGAAUGGCUCAUUA F -------------------------------------------------- Genicularia_spirotaenia AUGCCUAAGUAUAAACAAUUUUAUACUGUAAAACUGCGAAUGGCUCAUUA F -------------------------------------------------- Cyanophora_paradoxa AUGUCUAAGUAUAAACUAUUUUAUACUGUGAAACUGCGAAUGGCUCAUUA Glaucocystis_nostochinearum AUGUCUAAGUAUAAACAACUUUAUACUGUGAAACUGCGAAUGGCUCAUUA Gloeochaete_wittrockiana AUGUCUAAGUAUAAGCUAUUUAUACGGUGAAACUGCGAAUGGCUCAUUAA FChlorella'_luteoviridis AUGUCUAAGUAUAAACUGCUUAUACUGCGAAACUGCGAAUGGCUCAUUAA Oxytricha_longa AUGUCUAAGUAUAAAUGUUAUACAGUGAAACUGCGAAUGGCUCAUUAAAA Paraurostyla_weissei AUGUCUAAGUAUAAAUGUUAUACAGUGAAACUGCGAAUGGCUCAUUAAAA Cyrtohymena_citrina AUGUCUAAGUAUAAAUGUUAUACAGUGAAACUGCGAAUGGCUCAUUAAAA Gastrostyla_steinii AUGUCUAAGUAUAAAUGUUAUACAGUGAAACUGCGAAUGGCUCAUUAAAA Pleurotricha_lanceolota AUGUCUAAGUAUAAAUGUUAUACAGUGAAACUGCGAAUGGCUCAUUAAAA Onychodromus_quadricornutus AUGUCUAAGUAUAAAUGCUAUACAGUGAAACUGCGAAUGGCUCAUUAAAA Stylonychia_lemnae AUGUCUAAGUAUAAAUGUUAUACAGUGAAACUGCGAAUGGCUCAUUAAAA Stylonychia_mytilus AUGUCUAAGUAUAAAUGUUAUACAGUGAAACUGCGAAUGGCUCAUUAAAA Engelmanniella_mobilis AUGUCUAAGUAUAAAUGUUAUACAGUGAAACUGCGAAUGGCUCAUUAAAA Oxytricha_granulifera AUGUCUAAGUAUAAAUGUUAUACAGUGAAACUGCGAAUGGCUCAUUAAAA Oxytricha_granulifera AUGUCUAAGUAUAAAUGUUAUACAGUGAAACUGCGAAUGGCUCAUUAAAA Uroleptus_gallina AUGUCUAAGUAUAAAUGUUAUACAGUGAAACUGCGAAUGGCUCAUUAAAA Uroleptus_pisces AUGUCUAAGUAUAAAGGUUAUACAAUGAAACUGCGAAUGGCUCAUUAAAA Paruroleptus_lepisma AUGUCUAAGUAUAAAGGUUAUACAAUGAAACUGCGAAUGGCUCAUUAAAA Urostyla_grandis AUGUCUAAGUAUAAAUGAUAUACAGUGAAACUGCGAAUGGCUCAUUAAAA Balantidium_coli -------------------------------------------------- Euplotes_aediculatus AUGUCUAAGUAUAAAGGAUUUAUAAUGAAACUGCAAAUGGCUCAUUCAAA Tetrahymena_thermophila UGUGCCAGUUCAGUAUUGAACAGCGAAACUGCGAAUGGCUCAUUAAAACA Bangia_sp._(Northwest_Territories/NWT) CAUGUCUAAGUAUAAACACUUUUAUACUCGUGAAACUGCGAAUGGCUCAU Bangia_sp._(Virgin_Islands/VIS7) CAUGUCUAAGUAUAAGCGACUUUAUACUGUGAAACUGCGAAUGGCUCAUU Erythrotrichia_carnea AUGUCUAAGUAUAAACGUUUUAUACCGUGAAACUGCGAAUGGCUCAUUAA Rhodochaete_parvula AUGUCUAAGUAUAAACGUUUUUAUACCGUGAAACUGCGAAUGGCUCAUUA Compsopogon_coeruleus CAUGUCUAAGUAUGAACUUUUAUACUGUGAAACUGCGAAUGGCUCAUUAA Porphyridium_aerugineum CAUGUGUAAGUAUAAAUCUUUAUACGGUGAAACUGCGGAUGGCUCAUUAA Rhodella_maculata AUGUCUAAGUAUAAACGCUUUUAUACUGUGAAACUGCGAAUGGCUCAUUA Aulacoseira_ambigua AUGUGUAAGUAUAAGAAGUACUCGAGACUGCGAAUGGCUCAUUAUAUCAG Aulacoseira_baicalensis CAUGUGUAAGUAUAAGAACUUUCGAGACUGCGAAUGGCUCAUUAUAUCAG Stephanopyxis_nipponica CAUGUGUCAGUUUAAAAAUUUAUUUGAGACUGUGAAUGGCUCAUUAUAUC Coscinodiscus_radiatus CAUGUCUAAGUCUAAUUGGAAUUGACUAUUGAAACUGUGAACUGCUCAAU Corethron_criophilum CAUGUCUAAGUAUAAGCAUUAUACAGUGAAACUGUGAAUGGCUCAUUAAA Amphora_cf._capitellata CAAGUCUAAGUAUAAAUCUUUUACUUUGAAACUGCGAAUGGCUCAUUAUA Sellaphora_pupula_f._capitata CAUGUCUAAGUAUAAAUACCUUACUUUGAAAACUGCGAAUGGCUCAUUAU Thalassiosira_antarctica CAUGUCUAAGUAUAAAUAUUUUACUUUGAAACUGCGAACGGCUCAUUAUA Encyonema_triangulatum -------------------------------------------------- Achnanthes_bongranii -------------------------------------------------- F -------------------------------------------------- Diatoma_tenue -------------------------------------------------- Grammatophora_marina -------------------------------------------------- Thalassionema_sp._p474 -------------------------------------------------- Rhaphoneis_belgicae -------------------------------------------------- Undatella_sp._p446 -------------------------------------------------- Cymatosira_belgica -------------------------------------------------- Odontella_sinensis -------------------------------------------------- Ditylum_brightwellii -------------------------------------------------- Lithodesmium_undulatum -------------------------------------------------- Thalassiosira_eccentrica -------------------------------------------------- Thalassiosira_pseudonana -------------------------------------------------- Skeletonema_costatum -------------------------------------------------- Pleurosira_cf._laevis -------------------------------------------------- Lauderia_borealis -------------------------------------------------- F -------------------------------------------------- Bolidomonas_mediterranea -------------------------------------------------- Bolidomonas_pacifica -------------------------------------------------- Labyrinthuloides_minuta -------------------------------------------------- Leptocylindrus_danicus -------------------------------------------------- Chaetoceros_sp. -------------------------------------------------- Aphanomyces_invadans -------------------------------------------------- Lagenidium_giganteum -------------------------------------------------- Melosira_varians -------------------------------------------------- Blastocystis_hominis -------------------------------------------------- Perkinsus_marinus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Alexandrium_fundyense -------------------------------------------------- Babesia_bigemina -------------------------------------------------- Babesia_canis -------------------------------------------------- Babesia_sp._'Oklahoma_dog' -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_rodhaini -------------------------------------------------- Babesia_gibsoni -------------------------------------------------- Babesia_bovis -------------------------------------------------- Jakoba_libera -------------------------------------------------- Reclinomonas_americana -------------------------------------------------- Bonamia_ostreae -------------------------------------------------- Audouinella_dasyae -------------------------------------------------- Audouinella_hermannii -------------------------------------------------- Nemalion_helminthoides -------------------------------------------------- Batrachospermum_gelatinosum -------------------------------------------------- Nemalionopsis_tortuosa -------------------------------------------------- Thorea_hispida -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Nemalionopsis_shawii -------------------------------------------------- Balbiania_investiens -------------------------------------------------- Batrachospermum_macrosporum -------------------------------------------------- Ahnfeltia_plicata -------------------------------------------------- Corallina_officinalis -------------------------------------------------- Rhodogorgon_carriebowensis -------------------------------------------------- Bonnemaisonia_hamifera -------------------------------------------------- Gelidium_vagum -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Halymenia_plana -------------------------------------------------- Rhodymenia_leptophylla -------------------------------------------------- Plocamiocolax_pulvinata -------------------------------------------------- Ceramium_rubrum -------------------------------------------------- Gracilariopsis_sp. -------------------------------------------------- Bostrychia_moritziana -------------------------------------------------- Hildenbrandia_rubra -------------------------------------------------- Dixonielloa_grisea -------------------------------------------------- Naegleria_fowleri -------------------------------------------------- Naegleria_gruberi -------------------------------------------------- Hexamita_sp. -------------------------------------------------- Tritrichomonas_foetus -------------------------------------------------- Amblyospora_khaliulini -------------------------------------------------- Edhazardia_aedis -------------------------------------------------- Amblyospora_connecticus -------------------------------------------------- Intrapredatorus_barri -------------------------------------------------- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. -------------------------------------------------- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii -------------------------------------------------- Weiseria_palustris -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani -------------------------------------------------- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae -------------------------------------------------- Thelohania_solenopsae -------------------------------------------------- Visvesvaria_acridophagus -------------------------------------------------- Bacillidium_sp. -------------------------------------------------- Pseudonosema_cristatellae -------------------------------------------------- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum -------------------------------------------------- Pleistophora_mirandellae -------------------------------------------------- Trachipleistophora_hominis -------------------------------------------------- Vavraia_culicis -------------------------------------------------- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii -------------------------------------------------- F -------------------------------------------------- Dictyocoela_gammarellum -------------------------------------------------- Microsporidium_prosopium -------------------------------------------------- Antonospora_scoticae -------------------------------------------------- Paranosema_whitei -------------------------------------------------- #=GC SS_cons .................................................. Cynomorium_coccineum -------------------------------------------------- Cytinus_ruber -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Spinacia_oleracea -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Ricinus_communis -------------------------------------------------- F -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Pyramimonas_parkeae -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Pilostyles_thurberi -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Penicillium_chrysogenum -------------------------------------------------- Emericella_nidulans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Williopsis_saturnus_var._mrakii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Babesia_bovis -------------------------------------------------- Tetrahymena_pyriformis -------------------------------------------------- Suillus_sinuspaulianus -------------------------------------------------- Paramecium_tetraurelia -------------------------------------------------- Dictyostelium_discoideum -------------------------------------------------- Physarum_polycephalum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Hydnora_africana -------------------------------------------------- Codium_fragile -------------------------------------------------- Caulerpa_sertularioides -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cryptomonas_sp. -------------------------------------------------- Palmaria_palmata -------------------------------------------------- Heterosigma_akashiwo -------------------------------------------------- Skeletonema_pseudocostatum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Cyanidium_caldarium -------------------------------------------------- Emiliania_huxleyi -------------------------------------------------- Euglena_gracilis -------------------------------------------------- Anabaena_sp. -------------------------------------------------- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -------------------------------------------------- F -------------------------------------------------- Oscillatoria_agardhii -------------------------------------------------- Pleurocapsa_sp. -------------------------------------------------- Microcystis_aeruginosa -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos -------------------------------------------------- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Bacillus_anthracis -------------------------------------------------- Bacillus_cereus -------------------------------------------------- Enterococcus_faecalis -------------------------------------------------- Enterococcus_faecium -------------------------------------------------- Listeria_monocytogenes -------------------------------------------------- Bacillus_subtilis -------------------------------------------------- Bacillus_subtilis_A -------------------------------------------------- Bacillus_halodurans -------------------------------------------------- Staphylococcus_aureus -------------------------------------------------- Staphylococcus_aureus_N315 -------------------------------------------------- Lactococcus_lactis_subsp._lactis -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Lactobacillus_acidophilus -------------------------------------------------- Mycoplasma_capricolum -------------------------------------------------- Mycoplasma_mycoides -------------------------------------------------- Erysipelothrix_rhusiopathiae_(alpha-P15) -------------------------------------------------- Clostridium_innocuum -------------------------------------------------- Mycoplasma_genitalium -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_gallisepticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Mycoplasma_hyopneumoniae -------------------------------------------------- Fusobacterium_necrophorum -------------------------------------------------- Fusobacterium_nucleatum_subsp._nucleatum -------------------------------------------------- Streptobacillus_moniliformis -------------------------------------------------- Clostridium_botulinum_type_f -------------------------------------------------- Clostridium_tetani -------------------------------------------------- Clostridium_perfringens -------------------------------------------------- Clostridium_difficile -------------------------------------------------- Eubacterium_brachy -------------------------------------------------- Epulopiscium_sp. -------------------------------------------------- Heliobacterium_chlorum -------------------------------------------------- Glycine_max -------------------------------------------------- Oenothera_berteroana -------------------------------------------------- Secale_cereale -------------------------------------------------- Triticum_aestivum -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Gluconacetobacter_liquefaciens -------------------------------------------------- Bradyrhizobium_japonicum -------------------------------------------------- Rhodoblastus_acidophilus -------------------------------------------------- Azorhizobium_caulinodans -------------------------------------------------- Bartonella_quintana -------------------------------------------------- Mesorhizobium_loti -------------------------------------------------- Agrobacterium_tumefaciens -------------------------------------------------- Bartonella_bacilliformis -------------------------------------------------- Bartonella_henselae -------------------------------------------------- Brucella_melitensis -------------------------------------------------- Rhodobium_orientis -------------------------------------------------- F -------------------------------------------------- Rickettsia_bellii -------------------------------------------------- Rickettsia_felis_URRWXCal2 -------------------------------------------------- Rickettsia_prowazekii -------------------------------------------------- Rickettsia_prowazekii_(str._Madrid_E) -------------------------------------------------- Rickettsia_rickettsii -------------------------------------------------- Acinetobacter_calcoaceticus -------------------------------------------------- Psychrobacter_pacificensis -------------------------------------------------- Chromohalobacter_marismortui -------------------------------------------------- F -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_sp. -------------------------------------------------- Pseudomonas_putida -------------------------------------------------- Coxiella_burnetii -------------------------------------------------- Methylococcus_capsulatus -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Allochromatium_vinosum -------------------------------------------------- Beggiatoa_sp._1401-13 -------------------------------------------------- Aeromonas_hydrophila -------------------------------------------------- Shewanella_putrefaciens -------------------------------------------------- Citrobacter_freundii -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Klebsiella_pneumoniae -------------------------------------------------- Plesiomonas_shigelloides -------------------------------------------------- Yersinia_pestis -------------------------------------------------- F -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Escherichia_coli_O157:H7 -------------------------------------------------- Escherichia_coli_O157:H7_EDL933 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli_K12 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Salmonella_typhimurium -------------------------------------------------- Serratia_marcescens -------------------------------------------------- Edwardsiella_tarda -------------------------------------------------- Proteus_vulgaris -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- F -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae_(operons_A-F) -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Xanthomonas_albilineans -------------------------------------------------- Xanthomonas_campestris -------------------------------------------------- Xylella_fastidiosa -------------------------------------------------- Dichelobacter_nodosus -------------------------------------------------- Francisella_tularensis -------------------------------------------------- Bordetella_parapertussis -------------------------------------------------- Bordetella_pertussis -------------------------------------------------- Bordetella_bronchiseptica -------------------------------------------------- unidentified_proteobacterium -------------------------------------------------- Burkholderia_mallei -------------------------------------------------- Burkholderia_sp. -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -------------------------------------------------- Comamonas_testosteroni -------------------------------------------------- Desulfovibrio_desulfuricans -------------------------------------------------- Myxococcus_xanthus -------------------------------------------------- Deferribacter_thermophilus -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_hermsii -------------------------------------------------- Spirochaeta_aurantia -------------------------------------------------- Treponema_pallidum_(rRNA_A) -------------------------------------------------- Leptonema_illini -------------------------------------------------- Leptospira_interrogans -------------------------------------------------- Chlamydia_trachomatis_D/UW-3/CX -------------------------------------------------- Chlamydia_trachomatis_L2/434/BU -------------------------------------------------- Chlamydia_muridarum -------------------------------------------------- Chlamydophila_pneumoniae_AR39 -------------------------------------------------- Chlamydophila_pneumoniae -------------------------------------------------- Chlamydophila_pneumoniae_J138 -------------------------------------------------- F -------------------------------------------------- Chlamydophila_psittaci -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- Porphyromonas_gingivalis -------------------------------------------------- Prosthecochloris_vibrioformis -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_sputorum -------------------------------------------------- F -------------------------------------------------- Helicobacter_pylori_J99 -------------------------------------------------- Helicobacter_pylori -------------------------------------------------- Acidobacterium_capsulatum -------------------------------------------------- Holophaga_foetida -------------------------------------------------- Arthrobacter_globiformis -------------------------------------------------- Micrococcus_luteus -------------------------------------------------- Frankia_sp. -------------------------------------------------- Streptomyces_bottropensis -------------------------------------------------- Streptomyces_scabiei -------------------------------------------------- Streptomyces_neyagawaensis -------------------------------------------------- F -------------------------------------------------- Streptomyces_sp. -------------------------------------------------- Streptomyces_acidiscabies -------------------------------------------------- Streptomyces_griseus -------------------------------------------------- Streptomyces_ornatus -------------------------------------------------- Streptomyces_subrutilus -------------------------------------------------- Streptomyces_bikiniensis -------------------------------------------------- Streptomyces_galbus -------------------------------------------------- Streptomyces_hygroscopicus -------------------------------------------------- Streptomyces_lincolnensis -------------------------------------------------- Streptomyces_coelicolor -------------------------------------------------- Streptomyces_tendae -------------------------------------------------- Streptomyces_ambofaciens -------------------------------------------------- Streptomyces_eurythermus -------------------------------------------------- Streptomyces_nodosus -------------------------------------------------- Streptomyces_sampsonii -------------------------------------------------- Streptomyces_glaucescens -------------------------------------------------- Streptomyces_pseudogriseolus -------------------------------------------------- Streptomyces_caelestis -------------------------------------------------- Streptomyces_bluensis -------------------------------------------------- Streptomyces_espinosus -------------------------------------------------- Streptomyces_mashuensis -------------------------------------------------- Streptomyces_rimosus -------------------------------------------------- Streptomyces_limosus -------------------------------------------------- Streptomyces_odorifer -------------------------------------------------- Streptomyces_felleus -------------------------------------------------- Streptomyces_albidoflavus -------------------------------------------------- Streptomyces_gougerotii -------------------------------------------------- Streptomyces_rutgersensis -------------------------------------------------- Streptomyces_intermedius -------------------------------------------------- F -------------------------------------------------- Streptomyces_thermoviolaceus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus -------------------------------------------------- Streptomyces_megasporus -------------------------------------------------- Streptomyces_thermolineatus -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_avium -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides -------------------------------------------------- Rhodococcus_erythropolis -------------------------------------------------- Corynebacterium_diphtheriae -------------------------------------------------- Actinomyces_israelii -------------------------------------------------- Brachyspira_hyodysenteriae -------------------------------------------------- Geotoga_subterranea -------------------------------------------------- Petrotoga_miotherma -------------------------------------------------- Brevinema_andersonii -------------------------------------------------- Herpetosiphon_aurantiacus -------------------------------------------------- F -------------------------------------------------- Aquifex_aeolicus -------------------------------------------------- Aquifex_pyrophilus -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- Thermus_aquaticus -------------------------------------------------- Thermomicrobium_roseum -------------------------------------------------- Pirellula_marina -------------------------------------------------- Pirellula_staleyi -------------------------------------------------- Planctomycetaceae_Schlesner_670 -------------------------------------------------- Gemmata_obscuriglobus -------------------------------------------------- Isosphaera_pallida -------------------------------------------------- Pyrococcus_abyssi -------------------------------------------------- Pyrococcus_horikoshii -------------------------------------------------- Pyrococcus_furiosus -------------------------------------------------- Thermococcus_celer -------------------------------------------------- Archaeoglobus_fulgidus -------------------------------------------------- Nanoarchaeum_equitans -------------------------------------------------- Aeropyrum_pernix_(str._K1) -------------------------------------------------- Pyrodictium_occultum -------------------------------------------------- Thermoproteus_tenax -------------------------------------------------- Sulfolobus_acidocaldarius -------------------------------------------------- Sulfolobus_solfataricus -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum -------------------------------------------------- Methanococcus_vannielii -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -------------------------------------------------- Natronorubrum_bangense -------------------------------------------------- Natronobacterium_innermongoliae -------------------------------------------------- Haloferax_volcanii -------------------------------------------------- Methanospirillum_hungatei -------------------------------------------------- Picrophilus_torridus_DSM_9790 -------------------------------------------------- Thermoplasma_acidophilum -------------------------------------------------- Giardia_ardeae -------------------------------------------------- Giardia_intestinalis -------------------------------------------------- Giardia_muris -------------------------------------------------- Amblyospora_bracteata -------------------------------------------------- Glomus_sp._W3349 -------------------------------------------------- Scutellospora_cerradensis -------------------------------------------------- Glomus_intraradices -------------------------------------------------- Smittium_culisetae -------------------------------------------------- Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus -------------------------------------------------- Tilletia_caries -------------------------------------------------- Mucor_circinelloides_f._lusitanicus -------------------------------------------------- Mucor_racemosus -------------------------------------------------- Rhizopus_oryzae -------------------------------------------------- Mytilus_edulis -------------------------------------------------- Placopecten_magellanicus -------------------------------------------------- Echinococcus_granulosus -------------------------------------------------- Drosophila_melanogaster -------------------------------------------------- Crossodonthina_koreana -------------------------------------------------- Androctonus_australis -------------------------------------------------- Okanagana_utahensis -------------------------------------------------- Artemia_salina -------------------------------------------------- Mus_musculus -------------------------------------------------- Rattus_norvegicus -------------------------------------------------- Homo_sapiens -------------------------------------------------- Oryctolagus_cuniculus -------------------------------------------------- Xenopus_borealis -------------------------------------------------- Xenopus_laevis -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Balamuthia_mandrillaris -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Entamoeba_histolytica -------------------------------------------------- Ichthyophonus_hoferi -------------------------------------------------- Dermocystidium_sp. -------------------------------------------------- Sphaerothecum_destruens -------------------------------------------------- Acanthocoepsis_unguiculata -------------------------------------------------- Diaphanoeca_grandis -------------------------------------------------- Allomyces_macrogynus -------------------------------------------------- Blastocladiella_emersonii -------------------------------------------------- Candida_albicans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Coccidioides_immitis -------------------------------------------------- Leishmania_major -------------------------------------------------- Trypanosoma_cruzi -------------------------------------------------- Trypanosoma_brucei -------------------------------------------------- Pneumocystis_carinii -------------------------------------------------- Cryptococcus_neoformans_var._neoformans -------------------------------------------------- fungal_contaminant_of_QPX_isolate -------------------------------------------------- Ustilago_maydis -------------------------------------------------- Mnemiopsis_leidyi -------------------------------------------------- Tripedalia_cystophora -------------------------------------------------- Microciona_prolifera -------------------------------------------------- Psorospermium_haeckeli -------------------------------------------------- Euglypha_rotunda -------------------------------------------------- Paulinella_chromatophora -------------------------------------------------- Antirrhinum_majus -------------------------------------------------- Sesamum_indicum -------------------------------------------------- Digitalis_grandiflora -------------------------------------------------- Plantago_lanceolata -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Arabidopsis_thaliana -------------------------------------------------- Sinapis_alba -------------------------------------------------- Solanum_tuberosum AUCAGUUAUAGUUUGUUUGAUGGUAUCUACUAC----------------- Fragaria_x_ananassa AAUCAGUUA----------------------------------------- Glycine_max AAUCAGUUA----------------------------------------- Oryza_sativa AAUCAGUUA----------------------------------------- Zea_mays AAUCAGUUA----------------------------------------- F -------------------------------------------------- Genicularia_spirotaenia AAUCAGUUAU---------------------------------------- F -------------------------------------------------- Cyanophora_paradoxa AAUCAGUUAU---------------------------------------- Glaucocystis_nostochinearum AAUCAGUUAUAGUUUAUUUGAUGGUACCUUACUAC--------------- Gloeochaete_wittrockiana AUCAGUUA------------------------------------------ FChlorella'_luteoviridis AUCAGUACUAAUUUAUUUGAUGGUUGCCUUGC------------------ Oxytricha_longa CAGUUA-------------------------------------------- Paraurostyla_weissei CAGUUA-------------------------------------------- Cyrtohymena_citrina CAGUUA-------------------------------------------- Gastrostyla_steinii CAGUUA-------------------------------------------- Pleurotricha_lanceolota CAGUUA-------------------------------------------- Onychodromus_quadricornutus CAGUUA-------------------------------------------- Stylonychia_lemnae CAGUUA-------------------------------------------- Stylonychia_mytilus CAGUUA-------------------------------------------- Engelmanniella_mobilis CAGUUA-------------------------------------------- Oxytricha_granulifera CAGUUA-------------------------------------------- Oxytricha_granulifera CAGUUA-------------------------------------------- Uroleptus_gallina CAGUUA-------------------------------------------- Uroleptus_pisces CAGUUA-------------------------------------------- Paruroleptus_lepisma CAGUUA-------------------------------------------- Urostyla_grandis CAGUUA-------------------------------------------- Balantidium_coli -------------------------------------------------- Euplotes_aediculatus CAGUUAUAGUUUAUUUGAUAUUCAAGCUAAUAUUCUUAUUAGUUAAAUGG Tetrahymena_thermophila GUUAU--------------------------------------------- Bangia_sp._(Northwest_Territories/NWT) UAAAACAGUU---------------------------------------- Bangia_sp._(Virgin_Islands/VIS7) AUAUCAGUUAUAGUUUAUUUGAUAGUAACUU------------------- Erythrotrichia_carnea AACAGUUAUAA--------------------------------------- Rhodochaete_parvula AAACAGUUA----------------------------------------- Compsopogon_coeruleus AACAGUUA------------------------------------------ Porphyridium_aerugineum AACAGUCA------------------------------------------ Rhodella_maculata AAACAGUUA----------------------------------------- Aulacoseira_ambigua UUAU---------------------------------------------- Aulacoseira_baicalensis UUAU---------------------------------------------- Stephanopyxis_nipponica AGUUAUA------------------------------------------- Coscinodiscus_radiatus AAAUCGGUUAU--------------------------------------- Corethron_criophilum UCAGUCA------------------------------------------- Amphora_cf._capitellata UCAGUUAU------------------------------------------ Sellaphora_pupula_f._capitata AUCAGUUAU----------------------------------------- Thalassiosira_antarctica UCAGUUAU------------------------------------------ Encyonema_triangulatum -------------------------------------------------- Achnanthes_bongranii -------------------------------------------------- F -------------------------------------------------- Diatoma_tenue -------------------------------------------------- Grammatophora_marina -------------------------------------------------- Thalassionema_sp._p474 -------------------------------------------------- Rhaphoneis_belgicae -------------------------------------------------- Undatella_sp._p446 -------------------------------------------------- Cymatosira_belgica -------------------------------------------------- Odontella_sinensis -------------------------------------------------- Ditylum_brightwellii -------------------------------------------------- Lithodesmium_undulatum -------------------------------------------------- Thalassiosira_eccentrica -------------------------------------------------- Thalassiosira_pseudonana -------------------------------------------------- Skeletonema_costatum -------------------------------------------------- Pleurosira_cf._laevis -------------------------------------------------- Lauderia_borealis -------------------------------------------------- F -------------------------------------------------- Bolidomonas_mediterranea -------------------------------------------------- Bolidomonas_pacifica -------------------------------------------------- Labyrinthuloides_minuta -------------------------------------------------- Leptocylindrus_danicus -------------------------------------------------- Chaetoceros_sp. -------------------------------------------------- Aphanomyces_invadans -------------------------------------------------- Lagenidium_giganteum -------------------------------------------------- Melosira_varians -------------------------------------------------- Blastocystis_hominis -------------------------------------------------- Perkinsus_marinus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Alexandrium_fundyense -------------------------------------------------- Babesia_bigemina -------------------------------------------------- Babesia_canis -------------------------------------------------- Babesia_sp._'Oklahoma_dog' -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_rodhaini -------------------------------------------------- Babesia_gibsoni -------------------------------------------------- Babesia_bovis -------------------------------------------------- Jakoba_libera -------------------------------------------------- Reclinomonas_americana -------------------------------------------------- Bonamia_ostreae -------------------------------------------------- Audouinella_dasyae -------------------------------------------------- Audouinella_hermannii -------------------------------------------------- Nemalion_helminthoides -------------------------------------------------- Batrachospermum_gelatinosum -------------------------------------------------- Nemalionopsis_tortuosa -------------------------------------------------- Thorea_hispida -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Nemalionopsis_shawii -------------------------------------------------- Balbiania_investiens -------------------------------------------------- Batrachospermum_macrosporum -------------------------------------------------- Ahnfeltia_plicata -------------------------------------------------- Corallina_officinalis -------------------------------------------------- Rhodogorgon_carriebowensis -------------------------------------------------- Bonnemaisonia_hamifera -------------------------------------------------- Gelidium_vagum -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Halymenia_plana -------------------------------------------------- Rhodymenia_leptophylla -------------------------------------------------- Plocamiocolax_pulvinata -------------------------------------------------- Ceramium_rubrum -------------------------------------------------- Gracilariopsis_sp. -------------------------------------------------- Bostrychia_moritziana -------------------------------------------------- Hildenbrandia_rubra -------------------------------------------------- Dixonielloa_grisea -------------------------------------------------- Naegleria_fowleri -------------------------------------------------- Naegleria_gruberi -------------------------------------------------- Hexamita_sp. -------------------------------------------------- Tritrichomonas_foetus -------------------------------------------------- Amblyospora_khaliulini -------------------------------------------------- Edhazardia_aedis -------------------------------------------------- Amblyospora_connecticus -------------------------------------------------- Intrapredatorus_barri -------------------------------------------------- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. -------------------------------------------------- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii -------------------------------------------------- Weiseria_palustris -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani -------------------------------------------------- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae -------------------------------------------------- Thelohania_solenopsae -------------------------------------------------- Visvesvaria_acridophagus -------------------------------------------------- Bacillidium_sp. -------------------------------------------------- Pseudonosema_cristatellae -------------------------------------------------- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum -------------------------------------------------- Pleistophora_mirandellae -------------------------------------------------- Trachipleistophora_hominis -------------------------------------------------- Vavraia_culicis -------------------------------------------------- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii -------------------------------------------------- F -------------------------------------------------- Dictyocoela_gammarellum -------------------------------------------------- Microsporidium_prosopium -------------------------------------------------- Antonospora_scoticae -------------------------------------------------- Paranosema_whitei -------------------------------------------------- #=GC SS_cons .................................................. Cynomorium_coccineum -------------------------------------------------- Cytinus_ruber -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Spinacia_oleracea -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Ricinus_communis -------------------------------------------------- F -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Pyramimonas_parkeae -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Pilostyles_thurberi -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Penicillium_chrysogenum -------------------------------------------------- Emericella_nidulans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Williopsis_saturnus_var._mrakii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Babesia_bovis -------------------------------------------------- Tetrahymena_pyriformis -------------------------------------------------- Suillus_sinuspaulianus -------------------------------------------------- Paramecium_tetraurelia -------------------------------------------------- Dictyostelium_discoideum -------------------------------------------------- Physarum_polycephalum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Hydnora_africana -------------------------------------------------- Codium_fragile -------------------------------------------------- Caulerpa_sertularioides -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cryptomonas_sp. -------------------------------------------------- Palmaria_palmata -------------------------------------------------- Heterosigma_akashiwo -------------------------------------------------- Skeletonema_pseudocostatum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Cyanidium_caldarium -------------------------------------------------- Emiliania_huxleyi -------------------------------------------------- Euglena_gracilis -------------------------------------------------- Anabaena_sp. -------------------------------------------------- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -------------------------------------------------- F -------------------------------------------------- Oscillatoria_agardhii -------------------------------------------------- Pleurocapsa_sp. -------------------------------------------------- Microcystis_aeruginosa -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos -------------------------------------------------- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Bacillus_anthracis -------------------------------------------------- Bacillus_cereus -------------------------------------------------- Enterococcus_faecalis -------------------------------------------------- Enterococcus_faecium -------------------------------------------------- Listeria_monocytogenes -------------------------------------------------- Bacillus_subtilis -------------------------------------------------- Bacillus_subtilis_A -------------------------------------------------- Bacillus_halodurans -------------------------------------------------- Staphylococcus_aureus -------------------------------------------------- Staphylococcus_aureus_N315 -------------------------------------------------- Lactococcus_lactis_subsp._lactis -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Lactobacillus_acidophilus -------------------------------------------------- Mycoplasma_capricolum -------------------------------------------------- Mycoplasma_mycoides -------------------------------------------------- Erysipelothrix_rhusiopathiae_(alpha-P15) -------------------------------------------------- Clostridium_innocuum -------------------------------------------------- Mycoplasma_genitalium -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_gallisepticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Mycoplasma_hyopneumoniae -------------------------------------------------- Fusobacterium_necrophorum -------------------------------------------------- Fusobacterium_nucleatum_subsp._nucleatum -------------------------------------------------- Streptobacillus_moniliformis -------------------------------------------------- Clostridium_botulinum_type_f -------------------------------------------------- Clostridium_tetani -------------------------------------------------- Clostridium_perfringens -------------------------------------------------- Clostridium_difficile -------------------------------------------------- Eubacterium_brachy -------------------------------------------------- Epulopiscium_sp. -------------------------------------------------- Heliobacterium_chlorum -------------------------------------------------- Glycine_max -------------------------------------------------- Oenothera_berteroana -------------------------------------------------- Secale_cereale -------------------------------------------------- Triticum_aestivum -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Gluconacetobacter_liquefaciens -------------------------------------------------- Bradyrhizobium_japonicum -------------------------------------------------- Rhodoblastus_acidophilus -------------------------------------------------- Azorhizobium_caulinodans -------------------------------------------------- Bartonella_quintana -------------------------------------------------- Mesorhizobium_loti -------------------------------------------------- Agrobacterium_tumefaciens -------------------------------------------------- Bartonella_bacilliformis -------------------------------------------------- Bartonella_henselae -------------------------------------------------- Brucella_melitensis -------------------------------------------------- Rhodobium_orientis -------------------------------------------------- F -------------------------------------------------- Rickettsia_bellii -------------------------------------------------- Rickettsia_felis_URRWXCal2 -------------------------------------------------- Rickettsia_prowazekii -------------------------------------------------- Rickettsia_prowazekii_(str._Madrid_E) -------------------------------------------------- Rickettsia_rickettsii -------------------------------------------------- Acinetobacter_calcoaceticus -------------------------------------------------- Psychrobacter_pacificensis -------------------------------------------------- Chromohalobacter_marismortui -------------------------------------------------- F -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_sp. -------------------------------------------------- Pseudomonas_putida -------------------------------------------------- Coxiella_burnetii -------------------------------------------------- Methylococcus_capsulatus -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Allochromatium_vinosum -------------------------------------------------- Beggiatoa_sp._1401-13 -------------------------------------------------- Aeromonas_hydrophila -------------------------------------------------- Shewanella_putrefaciens -------------------------------------------------- Citrobacter_freundii -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Klebsiella_pneumoniae -------------------------------------------------- Plesiomonas_shigelloides -------------------------------------------------- Yersinia_pestis -------------------------------------------------- F -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Escherichia_coli_O157:H7 -------------------------------------------------- Escherichia_coli_O157:H7_EDL933 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli_K12 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Salmonella_typhimurium -------------------------------------------------- Serratia_marcescens -------------------------------------------------- Edwardsiella_tarda -------------------------------------------------- Proteus_vulgaris -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- F -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae_(operons_A-F) -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Xanthomonas_albilineans -------------------------------------------------- Xanthomonas_campestris -------------------------------------------------- Xylella_fastidiosa -------------------------------------------------- Dichelobacter_nodosus -------------------------------------------------- Francisella_tularensis -------------------------------------------------- Bordetella_parapertussis -------------------------------------------------- Bordetella_pertussis -------------------------------------------------- Bordetella_bronchiseptica -------------------------------------------------- unidentified_proteobacterium -------------------------------------------------- Burkholderia_mallei -------------------------------------------------- Burkholderia_sp. -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -------------------------------------------------- Comamonas_testosteroni -------------------------------------------------- Desulfovibrio_desulfuricans -------------------------------------------------- Myxococcus_xanthus -------------------------------------------------- Deferribacter_thermophilus -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_hermsii -------------------------------------------------- Spirochaeta_aurantia -------------------------------------------------- Treponema_pallidum_(rRNA_A) -------------------------------------------------- Leptonema_illini -------------------------------------------------- Leptospira_interrogans -------------------------------------------------- Chlamydia_trachomatis_D/UW-3/CX -------------------------------------------------- Chlamydia_trachomatis_L2/434/BU -------------------------------------------------- Chlamydia_muridarum -------------------------------------------------- Chlamydophila_pneumoniae_AR39 -------------------------------------------------- Chlamydophila_pneumoniae -------------------------------------------------- Chlamydophila_pneumoniae_J138 -------------------------------------------------- F -------------------------------------------------- Chlamydophila_psittaci -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- Porphyromonas_gingivalis -------------------------------------------------- Prosthecochloris_vibrioformis -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_sputorum -------------------------------------------------- F -------------------------------------------------- Helicobacter_pylori_J99 -------------------------------------------------- Helicobacter_pylori -------------------------------------------------- Acidobacterium_capsulatum -------------------------------------------------- Holophaga_foetida -------------------------------------------------- Arthrobacter_globiformis -------------------------------------------------- Micrococcus_luteus -------------------------------------------------- Frankia_sp. -------------------------------------------------- Streptomyces_bottropensis -------------------------------------------------- Streptomyces_scabiei -------------------------------------------------- Streptomyces_neyagawaensis -------------------------------------------------- F -------------------------------------------------- Streptomyces_sp. -------------------------------------------------- Streptomyces_acidiscabies -------------------------------------------------- Streptomyces_griseus -------------------------------------------------- Streptomyces_ornatus -------------------------------------------------- Streptomyces_subrutilus -------------------------------------------------- Streptomyces_bikiniensis -------------------------------------------------- Streptomyces_galbus -------------------------------------------------- Streptomyces_hygroscopicus -------------------------------------------------- Streptomyces_lincolnensis -------------------------------------------------- Streptomyces_coelicolor -------------------------------------------------- Streptomyces_tendae -------------------------------------------------- Streptomyces_ambofaciens -------------------------------------------------- Streptomyces_eurythermus -------------------------------------------------- Streptomyces_nodosus -------------------------------------------------- Streptomyces_sampsonii -------------------------------------------------- Streptomyces_glaucescens -------------------------------------------------- Streptomyces_pseudogriseolus -------------------------------------------------- Streptomyces_caelestis -------------------------------------------------- Streptomyces_bluensis -------------------------------------------------- Streptomyces_espinosus -------------------------------------------------- Streptomyces_mashuensis -------------------------------------------------- Streptomyces_rimosus -------------------------------------------------- Streptomyces_limosus -------------------------------------------------- Streptomyces_odorifer -------------------------------------------------- Streptomyces_felleus -------------------------------------------------- Streptomyces_albidoflavus -------------------------------------------------- Streptomyces_gougerotii -------------------------------------------------- Streptomyces_rutgersensis -------------------------------------------------- Streptomyces_intermedius -------------------------------------------------- F -------------------------------------------------- Streptomyces_thermoviolaceus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus -------------------------------------------------- Streptomyces_megasporus -------------------------------------------------- Streptomyces_thermolineatus -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_avium -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides -------------------------------------------------- Rhodococcus_erythropolis -------------------------------------------------- Corynebacterium_diphtheriae -------------------------------------------------- Actinomyces_israelii -------------------------------------------------- Brachyspira_hyodysenteriae -------------------------------------------------- Geotoga_subterranea -------------------------------------------------- Petrotoga_miotherma -------------------------------------------------- Brevinema_andersonii -------------------------------------------------- Herpetosiphon_aurantiacus -------------------------------------------------- F -------------------------------------------------- Aquifex_aeolicus -------------------------------------------------- Aquifex_pyrophilus -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- Thermus_aquaticus -------------------------------------------------- Thermomicrobium_roseum -------------------------------------------------- Pirellula_marina -------------------------------------------------- Pirellula_staleyi -------------------------------------------------- Planctomycetaceae_Schlesner_670 -------------------------------------------------- Gemmata_obscuriglobus -------------------------------------------------- Isosphaera_pallida -------------------------------------------------- Pyrococcus_abyssi -------------------------------------------------- Pyrococcus_horikoshii -------------------------------------------------- Pyrococcus_furiosus -------------------------------------------------- Thermococcus_celer -------------------------------------------------- Archaeoglobus_fulgidus -------------------------------------------------- Nanoarchaeum_equitans -------------------------------------------------- Aeropyrum_pernix_(str._K1) -------------------------------------------------- Pyrodictium_occultum -------------------------------------------------- Thermoproteus_tenax -------------------------------------------------- Sulfolobus_acidocaldarius -------------------------------------------------- Sulfolobus_solfataricus -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum -------------------------------------------------- Methanococcus_vannielii -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -------------------------------------------------- Natronorubrum_bangense -------------------------------------------------- Natronobacterium_innermongoliae -------------------------------------------------- Haloferax_volcanii -------------------------------------------------- Methanospirillum_hungatei -------------------------------------------------- Picrophilus_torridus_DSM_9790 -------------------------------------------------- Thermoplasma_acidophilum -------------------------------------------------- Giardia_ardeae -------------------------------------------------- Giardia_intestinalis -------------------------------------------------- Giardia_muris -------------------------------------------------- Amblyospora_bracteata -------------------------------------------------- Glomus_sp._W3349 -------------------------------------------------- Scutellospora_cerradensis -------------------------------------------------- Glomus_intraradices -------------------------------------------------- Smittium_culisetae -------------------------------------------------- Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus -------------------------------------------------- Tilletia_caries -------------------------------------------------- Mucor_circinelloides_f._lusitanicus -------------------------------------------------- Mucor_racemosus -------------------------------------------------- Rhizopus_oryzae -------------------------------------------------- Mytilus_edulis -------------------------------------------------- Placopecten_magellanicus -------------------------------------------------- Echinococcus_granulosus -------------------------------------------------- Drosophila_melanogaster -------------------------------------------------- Crossodonthina_koreana -------------------------------------------------- Androctonus_australis -------------------------------------------------- Okanagana_utahensis -------------------------------------------------- Artemia_salina -------------------------------------------------- Mus_musculus -------------------------------------------------- Rattus_norvegicus -------------------------------------------------- Homo_sapiens -------------------------------------------------- Oryctolagus_cuniculus -------------------------------------------------- Xenopus_borealis -------------------------------------------------- Xenopus_laevis -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Balamuthia_mandrillaris ----------------------------------------UGCUCUGACC Plasmodium_falciparum ----------------------------------------AACCUGGUUG Plasmodium_falciparum ----------------------------------------AACCUGGUUG Plasmodium_vivax ----------------------------------------AACCUGGUUG Plasmodium_vivax ----------------------------------------AACCUGGUUG Plasmodium_vivax ----------------------------------------AACCUGGUUG Entamoeba_histolytica ----------------------------------------UAUCUGGUUG Ichthyophonus_hoferi ----------------------------------------CAACCUGGUU Dermocystidium_sp. ----------------------------------------CAACCUGGUU Sphaerothecum_destruens ----------------------------------------UAACCUGGUU Acanthocoepsis_unguiculata ----------------------------------------UAACCUGGUU Diaphanoeca_grandis ----------------------------------------UAACCUGGUU Allomyces_macrogynus ----------------------------------------UACCUGGUUG Blastocladiella_emersonii ----------------------------------------UACCUGGUUG Candida_albicans ----------------------------------------UAUCUGGUUG Saccharomyces_cerevisiae ----------------------------------------UAUCUGGUUG Neurospora_crassa ----------------------------------------UACCUGGUUG Podospora_anserina ----------------------------------------UACCUGGUUG Coccidioides_immitis ----------------------------------------AACCUGGUUG Leishmania_major ----------------------------------------UAUCUGGUUG Trypanosoma_cruzi ----------------------------------------AACCUGGUUG Trypanosoma_brucei ----------------------------------------GAUCUGGUUG Pneumocystis_carinii ----------------------------------------UACCUGGUGA Cryptococcus_neoformans_var._neoformans ----------------------------------------UACCUGGUUG fungal_contaminant_of_QPX_isolate ----------------------------------------UACCUGGUUG Ustilago_maydis ----------------------------------------UACCUGGUUG Mnemiopsis_leidyi ----------------------------------------UAACCUGGUU Tripedalia_cystophora ----------------------------------------UAACCUGGUU Microciona_prolifera ----------------------------------------UAACCUGGUU Psorospermium_haeckeli ----------------------------------------UAACCUGGUU Euglypha_rotunda ----------------------------------------AACCUGGUUG Paulinella_chromatophora ----------------------------------------AACCUGGUUG Antirrhinum_majus ----------------------------------------UGCUCUGACC Sesamum_indicum ----------------------------------------UGCUCUGACC Digitalis_grandiflora ----------------------------------------UGCUCUGACC Plantago_lanceolata ----------------------------------------UGCUCUGACC Nicotiana_tabacum ----------------------------------------UGCUCUGACC Arabidopsis_thaliana ----------------------------------------UACCUGGUUG Sinapis_alba ----------------------------------------UACCUGGUUG Solanum_tuberosum ----------------------------------------UCGGAUAACC Fragaria_x_ananassa ----------------------------------------UAGUUUGUUU Glycine_max ----------------------------------------UAGUUUGUUU Oryza_sativa ----------------------------------------UAGUUUGUUU Zea_mays ----------------------------------------UAGUUUGUUU F -------------------------------------------------- Genicularia_spirotaenia ----------------------------------------AGUUUAUUUG F -------------------------------------------------- Cyanophora_paradoxa ----------------------------------------AGUUUAUUUG Glaucocystis_nostochinearum ----------------------------------------UUGGAUAACC Gloeochaete_wittrockiana ----------------------------------------CAAUUUAUUU FChlorella'_luteoviridis ----------------------------------------UACUCGGAUA Oxytricha_longa ----------------------------------------UAGUUUAUUU Paraurostyla_weissei ----------------------------------------UAGUUUAUUU Cyrtohymena_citrina ----------------------------------------UAGUUUAUUU Gastrostyla_steinii ----------------------------------------UAGUUUAUUU Pleurotricha_lanceolota ----------------------------------------UAGUUUAUUU Onychodromus_quadricornutus ----------------------------------------UAGUUUAUUU Stylonychia_lemnae ----------------------------------------UAGUUUAUUU Stylonychia_mytilus ----------------------------------------UAGUUUAUUU Engelmanniella_mobilis ----------------------------------------UAGUUUAUUU Oxytricha_granulifera ----------------------------------------UAGUUUAUUU Oxytricha_granulifera ----------------------------------------UAGUUUAUUU Uroleptus_gallina ----------------------------------------UAGUUUAUUU Uroleptus_pisces ----------------------------------------UAGUUUAUUU Paruroleptus_lepisma ----------------------------------------UAGUUUAUUU Urostyla_grandis ----------------------------------------UAGUUUAUUU Balantidium_coli ----------------------------------------ACCUGGUUGA Euplotes_aediculatus AUAACCGUAGUAAUUCUAGAGCUAAUACAUGCGUUACGGGGAACUUUACG Tetrahymena_thermophila ----------------------------------------AGUUUAUUUG Bangia_sp._(Northwest_Territories/NWT) ----------------------------------------AUAGUUCCUU Bangia_sp._(Virgin_Islands/VIS7) ----------------------------------------UCUACUUGGA Erythrotrichia_carnea ----------------------------------------UUUAUUUGAU Rhodochaete_parvula ----------------------------------------UAAUUUAUUU Compsopogon_coeruleus ----------------------------------------UAAUUUAUUU Porphyridium_aerugineum ----------------------------------------UAAUUUACUC Rhodella_maculata ----------------------------------------UAGUUUAUUU Aulacoseira_ambigua ----------------------------------------AGUUUAUUUG Aulacoseira_baicalensis ----------------------------------------AGUUUAUUUG Stephanopyxis_nipponica ----------------------------------------GUUUAUUUGA Coscinodiscus_radiatus ----------------------------------------AAUUUACUUG Corethron_criophilum ----------------------------------------UUAUCUACAU Amphora_cf._capitellata ----------------------------------------AGUUUAUUUG Sellaphora_pupula_f._capitata ----------------------------------------AGUUUAUUUG Thalassiosira_antarctica ----------------------------------------AGUUUAUUUG Encyonema_triangulatum ----------------------------------------AGUUUAUUUG Achnanthes_bongranii ----------------------------------------AGUUUAUUGG F -------------------------------------------------- Diatoma_tenue ----------------------------------------AGUUUAUUUG Grammatophora_marina ----------------------------------------AAUUUAUUUG Thalassionema_sp._p474 ----------------------------------------AAUUUAUUUG Rhaphoneis_belgicae ----------------------------------------AGUUUAUUUG Undatella_sp._p446 ----------------------------------------AGUUUAUUUG Cymatosira_belgica ----------------------------------------AGUUUAUUUG Odontella_sinensis ----------------------------------------AGUUUAUUUG Ditylum_brightwellii ----------------------------------------AGUUUAUUUG Lithodesmium_undulatum ----------------------------------------AAUUUAUUUG Thalassiosira_eccentrica ----------------------------------------AGUUUAUUUG Thalassiosira_pseudonana ----------------------------------------UGUUUCUUUG Skeletonema_costatum ----------------------------------------AGUUUAUUUG Pleurosira_cf._laevis ----------------------------------------AAUUUAUUUG Lauderia_borealis ----------------------------------------AAUUUGUUUG F -------------------------------------------------- Bolidomonas_mediterranea ----------------------------------------AGUUUAUUUG Bolidomonas_pacifica ----------------------------------------ACUACAUGGA Labyrinthuloides_minuta ----------------------------------------AGUUUAUUUG Leptocylindrus_danicus ----------------------------------------AGCCUAUUUG Chaetoceros_sp. ----------------------------------------AGUUUAUUUG Aphanomyces_invadans ----------------------------------------AGUCUACUCG Lagenidium_giganteum ----------------------------------------AGUCUACUCG Melosira_varians ----------------------------------------UAGUUUAUUU Blastocystis_hominis ----------------------------------------UAGUUUAUUU Perkinsus_marinus ----------------------------------------AGUUUAUUUG Toxoplasma_gondii ----------------------------------------UAGUUUAUUU Alexandrium_fundyense ----------------------------------------CAAUGCAUUU Babesia_bigemina ----------------------------------------UGAAUAGCAA Babesia_canis ----------------------------------------AAAACAGUUA Babesia_sp._'Oklahoma_dog' ----------------------------------------AACUGCGAAU Babesia_microti ----------------------------------------AUAGUUUAUU Babesia_microti ----------------------------------------AUAGUUUAUU Babesia_microti ----------------------------------------AUAGUUUAUU Babesia_microti ----------------------------------------AUAGUUUAUU Babesia_microti ----------------------------------------AUAGUUUAUU Babesia_rodhaini ----------------------------------------AUAGUUUAUU Babesia_gibsoni ----------------------------------------UAGUUUAUUU Babesia_bovis ----------------------------------------UGCUCUGACC Jakoba_libera ----------------------------------------ACUUGGUCAU Reclinomonas_americana ----------------------------------------AUUUACUUGG Bonamia_ostreae ----------------------------------------AGAUGGCUCA Audouinella_dasyae ----------------------------------------UAGUUUCUUC Audouinella_hermannii ----------------------------------------UAGUUUCUUC Nemalion_helminthoides ----------------------------------------UAGUUUCUUC Batrachospermum_gelatinosum ----------------------------------------UAGUUUCUUC Nemalionopsis_tortuosa ----------------------------------------UAGUUUCUUC Thorea_hispida ----------------------------------------AGUUUCUUCG Thorea_violacea ----------------------------------------AGUUUCUUCG Thorea_violacea ----------------------------------------UUUACGACGA Thorea_violacea ----------------------------------------UUUACGACGA Nemalionopsis_shawii ----------------------------------------UAGUUUCUUC Balbiania_investiens ----------------------------------------UAGUUUCUUC Batrachospermum_macrosporum ----------------------------------------UAGUUUCUUC Ahnfeltia_plicata ----------------------------------------UAGUUUCUUC Corallina_officinalis ----------------------------------------UAAUUUCUUC Rhodogorgon_carriebowensis ----------------------------------------GCUCGGUAAA Bonnemaisonia_hamifera ----------------------------------------CUGUACAACG Gelidium_vagum ----------------------------------------UGUACAACGA Chondrus_crispus ----------------------------------------UAGUUUCUUC Halymenia_plana ----------------------------------------UGUACAACGA Rhodymenia_leptophylla ----------------------------------------UAUAGUUUCU Plocamiocolax_pulvinata ----------------------------------------UAUAGUUUCU Ceramium_rubrum ----------------------------------------AGUUUCUUCG Gracilariopsis_sp. ----------------------------------------UAAUUUCUUC Bostrychia_moritziana ----------------------------------------AUAACGAAAC Hildenbrandia_rubra ----------------------------------------UAUAGUUUCU Dixonielloa_grisea ----------------------------------------UAUUUAUUUG Naegleria_fowleri ----------------------------------------UAGCAGGUGC Naegleria_gruberi ----------------------------------------UAGCAGGUGC Hexamita_sp. ----------------------------------------AGAUUAAGGA Tritrichomonas_foetus ----------------------------------------UGCGAACAGC Amblyospora_khaliulini -------------------------------------------------- Edhazardia_aedis -------------------------------------------------- Amblyospora_connecticus -------------------------------------------------- Intrapredatorus_barri -------------------------------------------------- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. -------------------------------------------------- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii -------------------------------------------------- Weiseria_palustris -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani -------------------------------------------------- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae -------------------------------------------------- Thelohania_solenopsae -------------------------------------------------- Visvesvaria_acridophagus -------------------------------------------------- Bacillidium_sp. -------------------------------------------------- Pseudonosema_cristatellae -------------------------------------------------- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum -------------------------------------------------- Pleistophora_mirandellae -------------------------------------------------- Trachipleistophora_hominis -------------------------------------------------- Vavraia_culicis -------------------------------------------------- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii -------------------------------------------------- F -------------------------------------------------- Dictyocoela_gammarellum -------------------------------------------------- Microsporidium_prosopium -------------------------------------------------- Antonospora_scoticae -------------------------------------------------- Paranosema_whitei -------------------------------------------------- #=GC SS_cons .................................................. Cynomorium_coccineum -------------------------------------------------- Cytinus_ruber -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Spinacia_oleracea -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Ricinus_communis -------------------------------------------------- F -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Pyramimonas_parkeae -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Pilostyles_thurberi -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Penicillium_chrysogenum -------------------------------------------------- Emericella_nidulans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Williopsis_saturnus_var._mrakii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Babesia_bovis -------------------------------------------------- Tetrahymena_pyriformis -------------------------------------------------- Suillus_sinuspaulianus -------------------------------------------------- Paramecium_tetraurelia -------------------------------------------------- Dictyostelium_discoideum -------------------------------------------------- Physarum_polycephalum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Hydnora_africana -------------------------------------------------- Codium_fragile -------------------------------------------------- Caulerpa_sertularioides -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cryptomonas_sp. -------------------------------------------------- Palmaria_palmata -------------------------------------------------- Heterosigma_akashiwo -------------------------------------------------- Skeletonema_pseudocostatum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Cyanidium_caldarium -------------------------------------------------- Emiliania_huxleyi -------------------------------------------------- Euglena_gracilis -------------------------------------------------- Anabaena_sp. -------------------------------------------------- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -------------------------------------------------- F -------------------------------------------------- Oscillatoria_agardhii -------------------------------------------------- Pleurocapsa_sp. -------------------------------------------------- Microcystis_aeruginosa -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos -------------------------------------------------- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Bacillus_anthracis -------------------------------------------------- Bacillus_cereus -------------------------------------------------- Enterococcus_faecalis -------------------------------------------------- Enterococcus_faecium -------------------------------------------------- Listeria_monocytogenes -------------------------------------------------- Bacillus_subtilis -------------------------------------------------- Bacillus_subtilis_A -------------------------------------------------- Bacillus_halodurans -------------------------------------------------- Staphylococcus_aureus -------------------------------------------------- Staphylococcus_aureus_N315 -------------------------------------------------- Lactococcus_lactis_subsp._lactis -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Lactobacillus_acidophilus -------------------------------------------------- Mycoplasma_capricolum -------------------------------------------------- Mycoplasma_mycoides -------------------------------------------------- Erysipelothrix_rhusiopathiae_(alpha-P15) -------------------------------------------------- Clostridium_innocuum -------------------------------------------------- Mycoplasma_genitalium -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_gallisepticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Mycoplasma_hyopneumoniae -------------------------------------------------- Fusobacterium_necrophorum -------------------------------------------------- Fusobacterium_nucleatum_subsp._nucleatum -------------------------------------------------- Streptobacillus_moniliformis -------------------------------------------------- Clostridium_botulinum_type_f -------------------------------------------------- Clostridium_tetani -------------------------------------------------- Clostridium_perfringens -------------------------------------------------- Clostridium_difficile -------------------------------------------------- Eubacterium_brachy -------------------------------------------------- Epulopiscium_sp. -------------------------------------------------- Heliobacterium_chlorum -------------------------------------------------- Glycine_max -------------------------------------------------- Oenothera_berteroana -------------------------------------------------- Secale_cereale -------------------------------------------------- Triticum_aestivum -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Gluconacetobacter_liquefaciens -------------------------------------------------- Bradyrhizobium_japonicum -------------------------------------------------- Rhodoblastus_acidophilus -------------------------------------------------- Azorhizobium_caulinodans -------------------------------------------------- Bartonella_quintana -------------------------------------------------- Mesorhizobium_loti -------------------------------------------------- Agrobacterium_tumefaciens -------------------------------------------------- Bartonella_bacilliformis -------------------------------------------------- Bartonella_henselae -------------------------------------------------- Brucella_melitensis -------------------------------------------------- Rhodobium_orientis -------------------------------------------------- F -------------------------------------------------- Rickettsia_bellii -------------------------------------------------- Rickettsia_felis_URRWXCal2 -------------------------------------------------- Rickettsia_prowazekii -------------------------------------------------- Rickettsia_prowazekii_(str._Madrid_E) -------------------------------------------------- Rickettsia_rickettsii -------------------------------------------------- Acinetobacter_calcoaceticus -------------------------------------------------- Psychrobacter_pacificensis -------------------------------------------------- Chromohalobacter_marismortui -------------------------------------------------- F -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_sp. -------------------------------------------------- Pseudomonas_putida -------------------------------------------------- Coxiella_burnetii -------------------------------------------------- Methylococcus_capsulatus -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Allochromatium_vinosum -------------------------------------------------- Beggiatoa_sp._1401-13 -------------------------------------------------- Aeromonas_hydrophila -------------------------------------------------- Shewanella_putrefaciens -------------------------------------------------- Citrobacter_freundii -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Klebsiella_pneumoniae -------------------------------------------------- Plesiomonas_shigelloides -------------------------------------------------- Yersinia_pestis -------------------------------------------------- F -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Escherichia_coli_O157:H7 -------------------------------------------------- Escherichia_coli_O157:H7_EDL933 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli_K12 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Salmonella_typhimurium -------------------------------------------------- Serratia_marcescens -------------------------------------------------- Edwardsiella_tarda -------------------------------------------------- Proteus_vulgaris -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- F -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae_(operons_A-F) -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Xanthomonas_albilineans -------------------------------------------------- Xanthomonas_campestris -------------------------------------------------- Xylella_fastidiosa -------------------------------------------------- Dichelobacter_nodosus -------------------------------------------------- Francisella_tularensis -------------------------------------------------- Bordetella_parapertussis -------------------------------------------------- Bordetella_pertussis -------------------------------------------------- Bordetella_bronchiseptica -------------------------------------------------- unidentified_proteobacterium -------------------------------------------------- Burkholderia_mallei -------------------------------------------------- Burkholderia_sp. -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -------------------------------------------------- Comamonas_testosteroni -------------------------------------------------- Desulfovibrio_desulfuricans -------------------------------------------------- Myxococcus_xanthus -------------------------------------------------- Deferribacter_thermophilus -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_hermsii -------------------------------------------------- Spirochaeta_aurantia -------------------------------------------------- Treponema_pallidum_(rRNA_A) -------------------------------------------------- Leptonema_illini -------------------------------------------------- Leptospira_interrogans -------------------------------------------------- Chlamydia_trachomatis_D/UW-3/CX -------------------------------------------------- Chlamydia_trachomatis_L2/434/BU -------------------------------------------------- Chlamydia_muridarum -------------------------------------------------- Chlamydophila_pneumoniae_AR39 -------------------------------------------------- Chlamydophila_pneumoniae -------------------------------------------------- Chlamydophila_pneumoniae_J138 -------------------------------------------------- F -------------------------------------------------- Chlamydophila_psittaci -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- Porphyromonas_gingivalis -------------------------------------------------- Prosthecochloris_vibrioformis -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_sputorum -------------------------------------------------- F -------------------------------------------------- Helicobacter_pylori_J99 -------------------------------------------------- Helicobacter_pylori -------------------------------------------------- Acidobacterium_capsulatum -------------------------------------------------- Holophaga_foetida -------------------------------------------------- Arthrobacter_globiformis -------------------------------------------------- Micrococcus_luteus -------------------------------------------------- Frankia_sp. -------------------------------------------------- Streptomyces_bottropensis -------------------------------------------------- Streptomyces_scabiei -------------------------------------------------- Streptomyces_neyagawaensis -------------------------------------------------- F -------------------------------------------------- Streptomyces_sp. -------------------------------------------------- Streptomyces_acidiscabies -------------------------------------------------- Streptomyces_griseus -------------------------------------------------- Streptomyces_ornatus -------------------------------------------------- Streptomyces_subrutilus -------------------------------------------------- Streptomyces_bikiniensis -------------------------------------------------- Streptomyces_galbus -------------------------------------------------- Streptomyces_hygroscopicus -------------------------------------------------- Streptomyces_lincolnensis -------------------------------------------------- Streptomyces_coelicolor -------------------------------------------------- Streptomyces_tendae -------------------------------------------------- Streptomyces_ambofaciens -------------------------------------------------- Streptomyces_eurythermus -------------------------------------------------- Streptomyces_nodosus -------------------------------------------------- Streptomyces_sampsonii -------------------------------------------------- Streptomyces_glaucescens -------------------------------------------------- Streptomyces_pseudogriseolus -------------------------------------------------- Streptomyces_caelestis -------------------------------------------------- Streptomyces_bluensis -------------------------------------------------- Streptomyces_espinosus -------------------------------------------------- Streptomyces_mashuensis -------------------------------------------------- Streptomyces_rimosus -------------------------------------------------- Streptomyces_limosus -------------------------------------------------- Streptomyces_odorifer -------------------------------------------------- Streptomyces_felleus -------------------------------------------------- Streptomyces_albidoflavus -------------------------------------------------- Streptomyces_gougerotii -------------------------------------------------- Streptomyces_rutgersensis -------------------------------------------------- Streptomyces_intermedius -------------------------------------------------- F -------------------------------------------------- Streptomyces_thermoviolaceus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus -------------------------------------------------- Streptomyces_megasporus -------------------------------------------------- Streptomyces_thermolineatus -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_avium -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides -------------------------------------------------- Rhodococcus_erythropolis -------------------------------------------------- Corynebacterium_diphtheriae -------------------------------------------------- Actinomyces_israelii -------------------------------------------------- Brachyspira_hyodysenteriae -------------------------------------------------- Geotoga_subterranea -------------------------------------------------- Petrotoga_miotherma -------------------------------------------------- Brevinema_andersonii -------------------------------------------------- Herpetosiphon_aurantiacus -------------------------------------------------- F -------------------------------------------------- Aquifex_aeolicus -------------------------------------------------- Aquifex_pyrophilus -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- Thermus_aquaticus -------------------------------------------------- Thermomicrobium_roseum -------------------------------------------------- Pirellula_marina -------------------------------------------------- Pirellula_staleyi -------------------------------------------------- Planctomycetaceae_Schlesner_670 -------------------------------------------------- Gemmata_obscuriglobus -------------------------------------------------- Isosphaera_pallida -------------------------------------------------- Pyrococcus_abyssi -------------------------------------------------- Pyrococcus_horikoshii -------------------------------------------------- Pyrococcus_furiosus -------------------------------------------------- Thermococcus_celer -------------------------------------------------- Archaeoglobus_fulgidus -------------------------------------------------- Nanoarchaeum_equitans -------------------------------------------------- Aeropyrum_pernix_(str._K1) -------------------------------------------------- Pyrodictium_occultum -------------------------------------------------- Thermoproteus_tenax -------------------------------------------------- Sulfolobus_acidocaldarius -------------------------------------------------- Sulfolobus_solfataricus -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum -------------------------------------------------- Methanococcus_vannielii -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -------------------------------------------------- Natronorubrum_bangense -------------------------------------------------- Natronobacterium_innermongoliae -------------------------------------------------- Haloferax_volcanii -------------------------------------------------- Methanospirillum_hungatei -------------------------------------------------- Picrophilus_torridus_DSM_9790 -------------------------------------------------- Thermoplasma_acidophilum -------------------------------------------------- Giardia_ardeae -------------------------------------------------- Giardia_intestinalis -------------------------------------------------- Giardia_muris -------------------------------------------------- Amblyospora_bracteata -------------------------------------------------- Glomus_sp._W3349 -------------------------------------------------- Scutellospora_cerradensis -------------------------------------------------- Glomus_intraradices -------------------------------------------------- Smittium_culisetae -------------------------------------------------- Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus -------------------------------------------------- Tilletia_caries -------------------------------------------------- Mucor_circinelloides_f._lusitanicus -------------------------------------------------- Mucor_racemosus -------------------------------------------------- Rhizopus_oryzae -------------------------------------------------- Mytilus_edulis -------------------------------------------------- Placopecten_magellanicus -------------------------------------------------- Echinococcus_granulosus -------------------------------------------------- Drosophila_melanogaster -------------------------------------------------- Crossodonthina_koreana -------------------------------------------------- Androctonus_australis -------------------------------------------------- Okanagana_utahensis -------------------------------------------------- Artemia_salina -------------------------------------------------- Mus_musculus -------------------------------------------------- Rattus_norvegicus -------------------------------------------------- Homo_sapiens -------------------------------------------------- Oryctolagus_cuniculus -------------------------------------------------- Xenopus_borealis -------------------------------------------------- Xenopus_laevis -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Balamuthia_mandrillaris GUGUUGAGAAUAUUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUCU Plasmodium_falciparum AUCUUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAAGUGA Plasmodium_falciparum AUCUUGCCA----------------------------------------- Plasmodium_vivax AUCUUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAAGUGA Plasmodium_vivax AUCUUGCCAGUAGUCAUAU------------------------------- Plasmodium_vivax AUCUUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAAGUGA Entamoeba_histolytica AUCCUGCC------------------------------------------ Ichthyophonus_hoferi GAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUC Dermocystidium_sp. GUCCUGCCAGUAAGUCAUAUGCUUGUCUCCAAGAUUAAGCCAUGCAUGUC Sphaerothecum_destruens GAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUC Acanthocoepsis_unguiculata GAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUC Diaphanoeca_grandis GAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUC Allomyces_macrogynus AUCCUGCCAGUAGUCAUAUGCUUGUCUAAAAGAUUAAGCCAUGCAUGUCU Blastocladiella_emersonii AUCCUGCCAGUAGUCAUAUGCUUGUCUAAAAGAUUAAGCCAUGCAUGUCU Candida_albicans AUCCUGCCA----------------------------------------- Saccharomyces_cerevisiae AUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUCU Neurospora_crassa AUUCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUCU Podospora_anserina AUUCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUCU Coccidioides_immitis AUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUCU Leishmania_major AUUCUGCCAGUAGUCAUAUGCUUGUUUCAAGGACUUAGCCAUGCAUGCCU Trypanosoma_cruzi AUCCUGCCAGUAGUCAUAUGCUUGUUUCAAGGACUU-------------- Trypanosoma_brucei AUUCUGCCAGUAGUCAUAUGCUUGUUUCAAGGACUUAGCCAUGCAUGCCU Pneumocystis_carinii UCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUCUA Cryptococcus_neoformans_var._neoformans AUUCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUCU fungal_contaminant_of_QPX_isolate AUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUCU Ustilago_maydis AUUCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUCU Mnemiopsis_leidyi GAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUC Tripedalia_cystophora GAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUC Microciona_prolifera GAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGACUAAGCCAUGCAUGUC Psorospermium_haeckeli GAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUC Euglypha_rotunda AUCCUGCCAGUAACAUAUGCUUGUCUCAAAGACUAAGCCAUGCAUGUCUA Paulinella_chromatophora AUCCGGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUCU Antirrhinum_majus GUGUUGAGAAUAUUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUGU Sesamum_indicum GUGUUGAGAAUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUGU Digitalis_grandiflora GUGUUGAGAAUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUGU Plantago_lanceolata GUGUUGAGAAUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUGU Nicotiana_tabacum GUGUUGAGAAUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUGU Arabidopsis_thaliana AUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUGU Sinapis_alba AUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUGU Solanum_tuberosum GUAGUAAU------------------------------------------ Fragaria_x_ananassa GAUGGUAU------------------------------------------ Glycine_max GAUGGUAU------------------------------------------ Oryza_sativa GAUGGUAC------------------------------------------ Zea_mays GAUGGUAC------------------------------------------ F -------------------------------------------------- Genicularia_spirotaenia GUGGUACA------------------------------------------ F -------------------------------------------------- Cyanophora_paradoxa AUGGUACC------------------------------------------ Glaucocystis_nostochinearum GUAGUAAU------------------------------------------ Gloeochaete_wittrockiana GAUGGUUC------------------------------------------ FChlorella'_luteoviridis GCCGUAGU------------------------------------------ Oxytricha_longa GAUAAUCG------------------------------------------ Paraurostyla_weissei GAUAAUCA------------------------------------------ Cyrtohymena_citrina GAUAAUCA------------------------------------------ Gastrostyla_steinii GAUAAUCA------------------------------------------ Pleurotricha_lanceolota GAUAAUCA------------------------------------------ Onychodromus_quadricornutus GAUAAUCA------------------------------------------ Stylonychia_lemnae GAUAAUCG------------------------------------------ Stylonychia_mytilus GAUAAUCG------------------------------------------ Engelmanniella_mobilis GAUAAUCG------------------------------------------ Oxytricha_granulifera GAUAAUCG------------------------------------------ Oxytricha_granulifera GAUAAUCA------------------------------------------ Uroleptus_gallina GAUAAUCG------------------------------------------ Uroleptus_pisces GAUAAUCG------------------------------------------ Paruroleptus_lepisma GAUAAUCG------------------------------------------ Urostyla_grandis GAUAAUCA------------------------------------------ Balantidium_coli UCCUGCCA------------------------------------------ Euplotes_aediculatus GGACCCCA------------------------------------------ Tetrahymena_thermophila AUAAUUAA------------------------------------------ Bangia_sp._(Northwest_Territories/NWT) UGGGAACA------------------------------------------ Bangia_sp._(Virgin_Islands/VIS7) UAACCGUA------------------------------------------ Erythrotrichia_carnea GUUUUACC------------------------------------------ Rhodochaete_parvula GAUGGUUA------------------------------------------ Compsopogon_coeruleus GAUAGUAC------------------------------------------ Porphyridium_aerugineum GAUAGUAC------------------------------------------ Rhodella_maculata GAUAGUAC------------------------------------------ Aulacoseira_ambigua AUAGUCCC------------------------------------------ Aulacoseira_baicalensis AUAGUCCC------------------------------------------ Stephanopyxis_nipponica UAGUUCCC------------------------------------------ Coscinodiscus_radiatus AUGAUUUU------------------------------------------ Corethron_criophilum GAUAAUUC------------------------------------------ Amphora_cf._capitellata AUAGUCCC------------------------------------------ Sellaphora_pupula_f._capitata AUAGUCCC------------------------------------------ Thalassiosira_antarctica AUAGUCCC------------------------------------------ Encyonema_triangulatum AUAGUCCC------------------------------------------ Achnanthes_bongranii AUAGUCCC------------------------------------------ F -------------------------------------------------- Diatoma_tenue AUAGUCCC------------------------------------------ Grammatophora_marina AUAGUCCC------------------------------------------ Thalassionema_sp._p474 AUAAUCCC------------------------------------------ Rhaphoneis_belgicae AUAGUCCC------------------------------------------ Undatella_sp._p446 AUAGUCCC------------------------------------------ Cymatosira_belgica AUAAUCCC------------------------------------------ Odontella_sinensis AUAGUCCU------------------------------------------ Ditylum_brightwellii AUAGUCCC------------------------------------------ Lithodesmium_undulatum AUAGUCCC------------------------------------------ Thalassiosira_eccentrica AUAGUCCC------------------------------------------ Thalassiosira_pseudonana AUAGUCCC------------------------------------------ Skeletonema_costatum AUAAUCCC------------------------------------------ Pleurosira_cf._laevis AUAGUCCC------------------------------------------ Lauderia_borealis AUAAUCCC------------------------------------------ F -------------------------------------------------- Bolidomonas_mediterranea AUAAUCUC------------------------------------------ Bolidomonas_pacifica UAACCGUA------------------------------------------ Labyrinthuloides_minuta AUAGAUUU------------------------------------------ Leptocylindrus_danicus AUAAUCCC------------------------------------------ Chaetoceros_sp. AUAGUCCC------------------------------------------ Aphanomyces_invadans ACAGUACC------------------------------------------ Lagenidium_giganteum AUAGUACC------------------------------------------ Melosira_varians GACGUUCU------------------------------------------ Blastocystis_hominis GGUGAAGU------------------------------------------ Perkinsus_marinus GUGAUCGA------------------------------------------ Toxoplasma_gondii GAUGGUCU------------------------------------------ Alexandrium_fundyense GGCGAUCA------------------------------------------ Babesia_bigemina CCUGGUUG------------------------------------------ Babesia_canis UAGUUUAU------------------------------------------ Babesia_sp._'Oklahoma_dog' GGCUCAUU------------------------------------------ Babesia_microti UGAUGUUC------------------------------------------ Babesia_microti UGAUGUUC------------------------------------------ Babesia_microti UGAUGUUC------------------------------------------ Babesia_microti UGAUGUUC------------------------------------------ Babesia_microti UGAUGUUC------------------------------------------ Babesia_rodhaini UGAUGUUU------------------------------------------ Babesia_gibsoni GAAAUUCG------------------------------------------ Babesia_bovis GUGUUGAG------------------------------------------ Jakoba_libera UGGAUCUG------------------------------------------ Reclinomonas_americana UGAUUGGA------------------------------------------ Bonamia_ostreae UUAUAACA------------------------------------------ Audouinella_dasyae GAUGGUAC------------------------------------------ Audouinella_hermannii GAUGGUAC------------------------------------------ Nemalion_helminthoides GAUGGUAC------------------------------------------ Batrachospermum_gelatinosum GAUGGUAC------------------------------------------ Nemalionopsis_tortuosa GAUGCUAA------------------------------------------ Thorea_hispida AUGAUAAU------------------------------------------ Thorea_violacea AUGAUAGU------------------------------------------ Thorea_violacea AACUGCGA------------------------------------------ Thorea_violacea AACUGCGA------------------------------------------ Nemalionopsis_shawii GAUGCUAA------------------------------------------ Balbiania_investiens GAUGGUAC------------------------------------------ Batrachospermum_macrosporum GAUGUUAC------------------------------------------ Ahnfeltia_plicata GAUGAUAC------------------------------------------ Corallina_officinalis GGUGAUUU------------------------------------------ Rhodogorgon_carriebowensis ACAGCUAU------------------------------------------ Bonnemaisonia_hamifera AAACUGCG------------------------------------------ Gelidium_vagum AACUGCGA------------------------------------------ Chondrus_crispus GAUGGUAA------------------------------------------ Halymenia_plana AACUGCGA------------------------------------------ Rhodymenia_leptophylla UCGAUGAU------------------------------------------ Plocamiocolax_pulvinata UCGAUGUU------------------------------------------ Ceramium_rubrum AUGGUAAA------------------------------------------ Gracilariopsis_sp. GGUGCUAA------------------------------------------ Bostrychia_moritziana UGCGAAUG------------------------------------------ Hildenbrandia_rubra UCGGGGGU------------------------------------------ Dixonielloa_grisea AUAGUAAA------------------------------------------ Naegleria_fowleri CCGCAAGG------------------------------------------ Naegleria_gruberi CUUCGGGC------------------------------------------ Hexamita_sp. UUAAGCCA------------------------------------------ Tritrichomonas_foetus UCAUUAAC------------------------------------------ Amblyospora_khaliulini -------------------------------------------------- Edhazardia_aedis -------------------------------------------------- Amblyospora_connecticus -------------------------------------------------- Intrapredatorus_barri -------------------------------------------------- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. -------------------------------------------------- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii -------------------------------------------------- Weiseria_palustris -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani -------------------------------------------------- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae -------------------------------------------------- Thelohania_solenopsae -------------------------------------------------- Visvesvaria_acridophagus -------------------------------------------------- Bacillidium_sp. -------------------------------------------------- Pseudonosema_cristatellae -------------------------------------------------- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum -------------------------------------------------- Pleistophora_mirandellae -------------------------------------------------- Trachipleistophora_hominis -------------------------------------------------- Vavraia_culicis -------------------------------------------------- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii -------------------------------------------------- F -------------------------------------------------- Dictyocoela_gammarellum -------------------------------------------------- Microsporidium_prosopium -------------------------------------------------- Antonospora_scoticae -------------------------------------------------- Paranosema_whitei -------------------------------------------------- #=GC SS_cons .................................................. Cynomorium_coccineum -------------------------------------------------- Cytinus_ruber -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Spinacia_oleracea -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Ricinus_communis -------------------------------------------------- F -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Pyramimonas_parkeae -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Pilostyles_thurberi -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Penicillium_chrysogenum -------------------------------------------------- Emericella_nidulans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Williopsis_saturnus_var._mrakii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Babesia_bovis -------------------------------------------------- Tetrahymena_pyriformis -------------------------------------------------- Suillus_sinuspaulianus -------------------------------------------------- Paramecium_tetraurelia -------------------------------------------------- Dictyostelium_discoideum -------------------------------------------------- Physarum_polycephalum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Hydnora_africana -------------------------------------------------- Codium_fragile -------------------------------------------------- Caulerpa_sertularioides -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cryptomonas_sp. -------------------------------------------------- Palmaria_palmata -------------------------------------------------- Heterosigma_akashiwo -------------------------------------------------- Skeletonema_pseudocostatum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Cyanidium_caldarium -------------------------------------------------- Emiliania_huxleyi -------------------------------------------------- Euglena_gracilis -------------------------------------------------- Anabaena_sp. -------------------------------------------------- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -------------------------------------------------- F -------------------------------------------------- Oscillatoria_agardhii -------------------------------------------------- Pleurocapsa_sp. -------------------------------------------------- Microcystis_aeruginosa -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos -------------------------------------------------- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Bacillus_anthracis -------------------------------------------------- Bacillus_cereus -------------------------------------------------- Enterococcus_faecalis -------------------------------------------------- Enterococcus_faecium -------------------------------------------------- Listeria_monocytogenes -------------------------------------------------- Bacillus_subtilis -------------------------------------------------- Bacillus_subtilis_A -------------------------------------------------- Bacillus_halodurans -------------------------------------------------- Staphylococcus_aureus -------------------------------------------------- Staphylococcus_aureus_N315 -------------------------------------------------- Lactococcus_lactis_subsp._lactis -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Lactobacillus_acidophilus -------------------------------------------------- Mycoplasma_capricolum -------------------------------------------------- Mycoplasma_mycoides -------------------------------------------------- Erysipelothrix_rhusiopathiae_(alpha-P15) -------------------------------------------------- Clostridium_innocuum -------------------------------------------------- Mycoplasma_genitalium -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_gallisepticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Mycoplasma_hyopneumoniae -------------------------------------------------- Fusobacterium_necrophorum -------------------------------------------------- Fusobacterium_nucleatum_subsp._nucleatum -------------------------------------------------- Streptobacillus_moniliformis -------------------------------------------------- Clostridium_botulinum_type_f -------------------------------------------------- Clostridium_tetani -------------------------------------------------- Clostridium_perfringens -------------------------------------------------- Clostridium_difficile -------------------------------------------------- Eubacterium_brachy -------------------------------------------------- Epulopiscium_sp. -------------------------------------------------- Heliobacterium_chlorum -------------------------------------------------- Glycine_max -------------------------------------------------- Oenothera_berteroana -------------------------------------------------- Secale_cereale -------------------------------------------------- Triticum_aestivum -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Gluconacetobacter_liquefaciens -------------------------------------------------- Bradyrhizobium_japonicum -------------------------------------------------- Rhodoblastus_acidophilus -------------------------------------------------- Azorhizobium_caulinodans -------------------------------------------------- Bartonella_quintana -------------------------------------------------- Mesorhizobium_loti -------------------------------------------------- Agrobacterium_tumefaciens -------------------------------------------------- Bartonella_bacilliformis -------------------------------------------------- Bartonella_henselae -------------------------------------------------- Brucella_melitensis -------------------------------------------------- Rhodobium_orientis -------------------------------------------------- F -------------------------------------------------- Rickettsia_bellii -------------------------------------------------- Rickettsia_felis_URRWXCal2 -------------------------------------------------- Rickettsia_prowazekii -------------------------------------------------- Rickettsia_prowazekii_(str._Madrid_E) -------------------------------------------------- Rickettsia_rickettsii -------------------------------------------------- Acinetobacter_calcoaceticus -------------------------------------------------- Psychrobacter_pacificensis -------------------------------------------------- Chromohalobacter_marismortui -------------------------------------------------- F -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_sp. -------------------------------------------------- Pseudomonas_putida -------------------------------------------------- Coxiella_burnetii -------------------------------------------------- Methylococcus_capsulatus -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Allochromatium_vinosum -------------------------------------------------- Beggiatoa_sp._1401-13 -------------------------------------------------- Aeromonas_hydrophila -------------------------------------------------- Shewanella_putrefaciens -------------------------------------------------- Citrobacter_freundii -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Klebsiella_pneumoniae -------------------------------------------------- Plesiomonas_shigelloides -------------------------------------------------- Yersinia_pestis -------------------------------------------------- F -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Escherichia_coli_O157:H7 -------------------------------------------------- Escherichia_coli_O157:H7_EDL933 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli_K12 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Salmonella_typhimurium -------------------------------------------------- Serratia_marcescens -------------------------------------------------- Edwardsiella_tarda -------------------------------------------------- Proteus_vulgaris -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- F -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae_(operons_A-F) -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Xanthomonas_albilineans -------------------------------------------------- Xanthomonas_campestris -------------------------------------------------- Xylella_fastidiosa -------------------------------------------------- Dichelobacter_nodosus -------------------------------------------------- Francisella_tularensis -------------------------------------------------- Bordetella_parapertussis -------------------------------------------------- Bordetella_pertussis -------------------------------------------------- Bordetella_bronchiseptica -------------------------------------------------- unidentified_proteobacterium -------------------------------------------------- Burkholderia_mallei -------------------------------------------------- Burkholderia_sp. -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -------------------------------------------------- Comamonas_testosteroni -------------------------------------------------- Desulfovibrio_desulfuricans -------------------------------------------------- Myxococcus_xanthus -------------------------------------------------- Deferribacter_thermophilus -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_hermsii -------------------------------------------------- Spirochaeta_aurantia -------------------------------------------------- Treponema_pallidum_(rRNA_A) -------------------------------------------------- Leptonema_illini -------------------------------------------------- Leptospira_interrogans -------------------------------------------------- Chlamydia_trachomatis_D/UW-3/CX -------------------------------------------------- Chlamydia_trachomatis_L2/434/BU -------------------------------------------------- Chlamydia_muridarum -------------------------------------------------- Chlamydophila_pneumoniae_AR39 -------------------------------------------------- Chlamydophila_pneumoniae -------------------------------------------------- Chlamydophila_pneumoniae_J138 -------------------------------------------------- F -------------------------------------------------- Chlamydophila_psittaci -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- Porphyromonas_gingivalis -------------------------------------------------- Prosthecochloris_vibrioformis -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_sputorum -------------------------------------------------- F -------------------------------------------------- Helicobacter_pylori_J99 -------------------------------------------------- Helicobacter_pylori -------------------------------------------------- Acidobacterium_capsulatum -------------------------------------------------- Holophaga_foetida -------------------------------------------------- Arthrobacter_globiformis -------------------------------------------------- Micrococcus_luteus -------------------------------------------------- Frankia_sp. -------------------------------------------------- Streptomyces_bottropensis -------------------------------------------------- Streptomyces_scabiei -------------------------------------------------- Streptomyces_neyagawaensis -------------------------------------------------- F -------------------------------------------------- Streptomyces_sp. -------------------------------------------------- Streptomyces_acidiscabies -------------------------------------------------- Streptomyces_griseus -------------------------------------------------- Streptomyces_ornatus -------------------------------------------------- Streptomyces_subrutilus -------------------------------------------------- Streptomyces_bikiniensis -------------------------------------------------- Streptomyces_galbus -------------------------------------------------- Streptomyces_hygroscopicus -------------------------------------------------- Streptomyces_lincolnensis -------------------------------------------------- Streptomyces_coelicolor -------------------------------------------------- Streptomyces_tendae -------------------------------------------------- Streptomyces_ambofaciens -------------------------------------------------- Streptomyces_eurythermus -------------------------------------------------- Streptomyces_nodosus -------------------------------------------------- Streptomyces_sampsonii -------------------------------------------------- Streptomyces_glaucescens -------------------------------------------------- Streptomyces_pseudogriseolus -------------------------------------------------- Streptomyces_caelestis -------------------------------------------------- Streptomyces_bluensis -------------------------------------------------- Streptomyces_espinosus -------------------------------------------------- Streptomyces_mashuensis -------------------------------------------------- Streptomyces_rimosus -------------------------------------------------- Streptomyces_limosus -------------------------------------------------- Streptomyces_odorifer -------------------------------------------------- Streptomyces_felleus -------------------------------------------------- Streptomyces_albidoflavus -------------------------------------------------- Streptomyces_gougerotii -------------------------------------------------- Streptomyces_rutgersensis -------------------------------------------------- Streptomyces_intermedius -------------------------------------------------- F -------------------------------------------------- Streptomyces_thermoviolaceus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus -------------------------------------------------- Streptomyces_megasporus -------------------------------------------------- Streptomyces_thermolineatus -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_avium -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides -------------------------------------------------- Rhodococcus_erythropolis -------------------------------------------------- Corynebacterium_diphtheriae -------------------------------------------------- Actinomyces_israelii -------------------------------------------------- Brachyspira_hyodysenteriae -------------------------------------------------- Geotoga_subterranea -------------------------------------------------- Petrotoga_miotherma -------------------------------------------------- Brevinema_andersonii -------------------------------------------------- Herpetosiphon_aurantiacus -------------------------------------------------- F -------------------------------------------------- Aquifex_aeolicus -------------------------------------------------- Aquifex_pyrophilus -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- Thermus_aquaticus -------------------------------------------------- Thermomicrobium_roseum -------------------------------------------------- Pirellula_marina -------------------------------------------------- Pirellula_staleyi -------------------------------------------------- Planctomycetaceae_Schlesner_670 -------------------------------------------------- Gemmata_obscuriglobus -------------------------------------------------- Isosphaera_pallida -------------------------------------------------- Pyrococcus_abyssi -------------------------------------------------- Pyrococcus_horikoshii -------------------------------------------------- Pyrococcus_furiosus -------------------------------------------------- Thermococcus_celer -------------------------------------------------- Archaeoglobus_fulgidus -------------------------------------------------- Nanoarchaeum_equitans -------------------------------------------------- Aeropyrum_pernix_(str._K1) -------------------------------------------------- Pyrodictium_occultum -------------------------------------------------- Thermoproteus_tenax -------------------------------------------------- Sulfolobus_acidocaldarius -------------------------------------------------- Sulfolobus_solfataricus -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum -------------------------------------------------- Methanococcus_vannielii -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -------------------------------------------------- Natronorubrum_bangense -------------------------------------------------- Natronobacterium_innermongoliae -------------------------------------------------- Haloferax_volcanii -------------------------------------------------- Methanospirillum_hungatei -------------------------------------------------- Picrophilus_torridus_DSM_9790 -------------------------------------------------- Thermoplasma_acidophilum -------------------------------------------------- Giardia_ardeae -------------------------------------------------- Giardia_intestinalis -------------------------------------------------- Giardia_muris -------------------------------------------------- Amblyospora_bracteata -------------------------------------------------- Glomus_sp._W3349 -------------------------------------------------- Scutellospora_cerradensis -------------------------------------------------- Glomus_intraradices -------------------------------------------------- Smittium_culisetae -------------------------------------------------- Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus -------------------------------------------------- Tilletia_caries -------------------------------------------------- Mucor_circinelloides_f._lusitanicus -------------------------------------------------- Mucor_racemosus -------------------------------------------------- Rhizopus_oryzae -------------------------------------------------- Mytilus_edulis -------------------------------------------------- Placopecten_magellanicus -------------------------------------------------- Echinococcus_granulosus -------------------------------------------------- Drosophila_melanogaster -------------------------------------------------- Crossodonthina_koreana -------------------------------------------------- Androctonus_australis -------------------------------------------------- Okanagana_utahensis -------------------------------------------------- Artemia_salina -------------------------------------------------- Mus_musculus -------------------------------------------------- Rattus_norvegicus -------------------------------------------------- Homo_sapiens -------------------------------------------------- Oryctolagus_cuniculus -------------------------------------------------- Xenopus_borealis -------------------------------------------------- Xenopus_laevis -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Balamuthia_mandrillaris AAGUAUAAGCUUUUAUACGGCGAGACUGCGGAUGGCUCAUUAAAUCAGUU Plasmodium_falciparum AAGUAUAUAUAUAUUUUAUAUGUAGAAACUGCGAACGGCUCAUUAAAACA Plasmodium_falciparum -------------------------------------------------- Plasmodium_vivax AAGUAUAUGCAUAUUUUAUAUGUAGAAACUGCGAACGGCUCAUUAAAACA Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax AAGUACAUGCAUAUUUUUAUAUGCGGAAACUGCGAACGGCUCAUUAAAAC Entamoeba_histolytica -------------------------------------------------- Ichthyophonus_hoferi UAAGUAUAAACAACUUUAUACUGUGAAACUGCGAAUGGCUCAUUAAAUCA Dermocystidium_sp. UAAGUAUAAACAAAUCUAUACUGUGAAACUGCGAAUGGCUCAUUAAAUCA Sphaerothecum_destruens UAAGUAUAAACAAAUCUAUACUGUGAAACUGCGAAUGGCUCAUUAAAUCA Acanthocoepsis_unguiculata UAAGUAUAAAUAGCUUUGUACUGUGAAACUGCGAAUGGCUCAUUAAAUCA Diaphanoeca_grandis UAAGUAUAAAUGACUUUAUACAGUGAAACUGCGAAUGGCUCAUUAAAUCA Allomyces_macrogynus AAGUAUAAACUGUUUAUACAAGUGAAACUGCGAAUGGCUCAUUAAAUCAG Blastocladiella_emersonii AAGUAUAAACUGCUUUAUACAAGUGAAACUGCGAAUGGCUCAUUAAAUCA Candida_albicans -------------------------------------------------- Saccharomyces_cerevisiae AAGUAUAAGCAAUUUAUACAGUGAAACUGCGAAUGGCUCAUUAAAUCAGU Neurospora_crassa AAGUUUAAGCAAUUAAACCGCGAAACUGCGAAUGGCUCAUUAAAUCAGUU Podospora_anserina AAGUAUAAGCAAUUAUACAGCGAAACUGCGAAUGGCUCAUUAAAUCAGUU Coccidioides_immitis AAGUAUAAGCAAUUUGUACGGUGAAACUGCGAAUGGCUCAUUAAAUCAGU Leishmania_major C------------------------------------------------- Trypanosoma_cruzi -------------------------------------------------- Trypanosoma_brucei CAGAAUCACUGCAUUGCAGGAAUCUGCGCAUGGCUCAUUACAUCAGACGU Pneumocystis_carinii AGUAUAAGCAAGUUAUACAGUGAAACUGCGAAUGGCUCAUUAUAUCAGUU Cryptococcus_neoformans_var._neoformans AAGUAUAAACGAAUUCAUACUGUGAAACUGCGAAUGGCUCAUUAAAUCAG fungal_contaminant_of_QPX_isolate AAGUAUAAACAAAUUCAUACUGUGAAACUGCGAAUGGCUCAUUAAAUCAG Ustilago_maydis AAGUAUACGCAAAUUAUACUGUGAAACUGCGAAUGGCUCAUUAAAUCAGU Mnemiopsis_leidyi UAAGUAUAAACUUUUAUACUGUGAAACUGCGAAUGGCUCAUUAGAUCAGU Tripedalia_cystophora UAAGUAUAAGCACUUGUACUGUGAAACUGCGAAUGGCUCAUUAAAUCAGU Microciona_prolifera UAAGUAUAAACGCUUAUGUACUGUGAAACUGCGAAUGGCUCAUUAAAUCA Psorospermium_haeckeli UAUGUAUAAAUUAUUUUACGAUGAGACUGCGAAUGGCUCAUUAAAUCAGU Euglypha_rotunda AGUAUAAACAACUUUAUACUGUGAAACUGCGUACAGCUCAUUAUAUCAGC Paulinella_chromatophora AAGUAUAAGCAACUUUAUACUGCGAAACUGCGUACAGCUCAUUAUAUCAG Antirrhinum_majus AAGUAUGAACUAAUUCAGACUGUGAAACUGCGAAUGGCUCAUUAAAUCAG Sesamum_indicum AAGUAUGAACUAAUUCAGACUGUGAAACUGCGAAUGGCUCAUUAAAUCAG Digitalis_grandiflora AAGUAUGAACUAAUUCAGACUGUGAAACUGCGAAUGGCUCAUUAAAUCAG Plantago_lanceolata AAGUAUGAACUAAUUCAGACUGUGAAACUGCGAAUGGCUCAUUAAAUCAG Nicotiana_tabacum AAGUAUGAACAAAUUCAGACUGUGAAACUGCGAAUGGCUCAUUAAAUCAG Arabidopsis_thaliana AAGUAUGAACGAAUUCAGACUGUGAAACUGCGAAUGGCUCAUUAAAUCAG Sinapis_alba AAGUAUGAACGAAUUCAGACUGUGAAACUGCGAAUGGCUCAUUAAAUCAG Solanum_tuberosum -------------------------------------------------- Fragaria_x_ananassa -------------------------------------------------- Glycine_max -------------------------------------------------- Oryza_sativa -------------------------------------------------- Zea_mays -------------------------------------------------- F -------------------------------------------------- Genicularia_spirotaenia -------------------------------------------------- F -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- FChlorella'_luteoviridis -------------------------------------------------- Oxytricha_longa -------------------------------------------------- Paraurostyla_weissei -------------------------------------------------- Cyrtohymena_citrina -------------------------------------------------- Gastrostyla_steinii -------------------------------------------------- Pleurotricha_lanceolota -------------------------------------------------- Onychodromus_quadricornutus -------------------------------------------------- Stylonychia_lemnae -------------------------------------------------- Stylonychia_mytilus -------------------------------------------------- Engelmanniella_mobilis -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Uroleptus_gallina -------------------------------------------------- Uroleptus_pisces -------------------------------------------------- Paruroleptus_lepisma -------------------------------------------------- Urostyla_grandis -------------------------------------------------- Balantidium_coli -------------------------------------------------- Euplotes_aediculatus -------------------------------------------------- Tetrahymena_thermophila -------------------------------------------------- Bangia_sp._(Northwest_Territories/NWT) -------------------------------------------------- Bangia_sp._(Virgin_Islands/VIS7) -------------------------------------------------- Erythrotrichia_carnea -------------------------------------------------- Rhodochaete_parvula -------------------------------------------------- Compsopogon_coeruleus -------------------------------------------------- Porphyridium_aerugineum -------------------------------------------------- Rhodella_maculata -------------------------------------------------- Aulacoseira_ambigua -------------------------------------------------- Aulacoseira_baicalensis -------------------------------------------------- Stephanopyxis_nipponica -------------------------------------------------- Coscinodiscus_radiatus -------------------------------------------------- Corethron_criophilum -------------------------------------------------- Amphora_cf._capitellata -------------------------------------------------- Sellaphora_pupula_f._capitata -------------------------------------------------- Thalassiosira_antarctica -------------------------------------------------- Encyonema_triangulatum -------------------------------------------------- Achnanthes_bongranii -------------------------------------------------- F -------------------------------------------------- Diatoma_tenue -------------------------------------------------- Grammatophora_marina -------------------------------------------------- Thalassionema_sp._p474 -------------------------------------------------- Rhaphoneis_belgicae -------------------------------------------------- Undatella_sp._p446 -------------------------------------------------- Cymatosira_belgica -------------------------------------------------- Odontella_sinensis -------------------------------------------------- Ditylum_brightwellii -------------------------------------------------- Lithodesmium_undulatum -------------------------------------------------- Thalassiosira_eccentrica -------------------------------------------------- Thalassiosira_pseudonana -------------------------------------------------- Skeletonema_costatum -------------------------------------------------- Pleurosira_cf._laevis -------------------------------------------------- Lauderia_borealis -------------------------------------------------- F -------------------------------------------------- Bolidomonas_mediterranea -------------------------------------------------- Bolidomonas_pacifica -------------------------------------------------- Labyrinthuloides_minuta -------------------------------------------------- Leptocylindrus_danicus -------------------------------------------------- Chaetoceros_sp. -------------------------------------------------- Aphanomyces_invadans -------------------------------------------------- Lagenidium_giganteum -------------------------------------------------- Melosira_varians -------------------------------------------------- Blastocystis_hominis -------------------------------------------------- Perkinsus_marinus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Alexandrium_fundyense -------------------------------------------------- Babesia_bigemina -------------------------------------------------- Babesia_canis -------------------------------------------------- Babesia_sp._'Oklahoma_dog' -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_rodhaini -------------------------------------------------- Babesia_gibsoni -------------------------------------------------- Babesia_bovis -------------------------------------------------- Jakoba_libera -------------------------------------------------- Reclinomonas_americana -------------------------------------------------- Bonamia_ostreae -------------------------------------------------- Audouinella_dasyae -------------------------------------------------- Audouinella_hermannii -------------------------------------------------- Nemalion_helminthoides -------------------------------------------------- Batrachospermum_gelatinosum -------------------------------------------------- Nemalionopsis_tortuosa -------------------------------------------------- Thorea_hispida -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Nemalionopsis_shawii -------------------------------------------------- Balbiania_investiens -------------------------------------------------- Batrachospermum_macrosporum -------------------------------------------------- Ahnfeltia_plicata -------------------------------------------------- Corallina_officinalis -------------------------------------------------- Rhodogorgon_carriebowensis -------------------------------------------------- Bonnemaisonia_hamifera -------------------------------------------------- Gelidium_vagum -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Halymenia_plana -------------------------------------------------- Rhodymenia_leptophylla -------------------------------------------------- Plocamiocolax_pulvinata -------------------------------------------------- Ceramium_rubrum -------------------------------------------------- Gracilariopsis_sp. -------------------------------------------------- Bostrychia_moritziana -------------------------------------------------- Hildenbrandia_rubra -------------------------------------------------- Dixonielloa_grisea -------------------------------------------------- Naegleria_fowleri -------------------------------------------------- Naegleria_gruberi -------------------------------------------------- Hexamita_sp. -------------------------------------------------- Tritrichomonas_foetus -------------------------------------------------- Amblyospora_khaliulini -------------------------------------------------- Edhazardia_aedis -------------------------------------------------- Amblyospora_connecticus -------------------------------------------------- Intrapredatorus_barri -------------------------------------------------- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. -------------------------------------------------- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii -------------------------------------------------- Weiseria_palustris -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani -------------------------------------------------- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae -------------------------------------------------- Thelohania_solenopsae -------------------------------------------------- Visvesvaria_acridophagus -------------------------------------------------- Bacillidium_sp. -------------------------------------------------- Pseudonosema_cristatellae -------------------------------------------------- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum -------------------------------------------------- Pleistophora_mirandellae -------------------------------------------------- Trachipleistophora_hominis -------------------------------------------------- Vavraia_culicis -------------------------------------------------- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii -------------------------------------------------- F -------------------------------------------------- Dictyocoela_gammarellum -------------------------------------------------- Microsporidium_prosopium -------------------------------------------------- Antonospora_scoticae -------------------------------------------------- Paranosema_whitei -------------------------------------------------- #=GC SS_cons .................................................. Cynomorium_coccineum -------------------------------------------------- Cytinus_ruber -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Spinacia_oleracea -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Ricinus_communis -------------------------------------------------- F -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Pyramimonas_parkeae -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Pilostyles_thurberi -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Penicillium_chrysogenum -------------------------------------------------- Emericella_nidulans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Williopsis_saturnus_var._mrakii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Babesia_bovis -------------------------------------------------- Tetrahymena_pyriformis -------------------------------------------------- Suillus_sinuspaulianus -------------------------------------------------- Paramecium_tetraurelia -------------------------------------------------- Dictyostelium_discoideum -------------------------------------------------- Physarum_polycephalum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Hydnora_africana -------------------------------------------------- Codium_fragile -------------------------------------------------- Caulerpa_sertularioides -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cryptomonas_sp. -------------------------------------------------- Palmaria_palmata -------------------------------------------------- Heterosigma_akashiwo -------------------------------------------------- Skeletonema_pseudocostatum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Cyanidium_caldarium -------------------------------------------------- Emiliania_huxleyi -------------------------------------------------- Euglena_gracilis -------------------------------------------------- Anabaena_sp. -------------------------------------------------- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -------------------------------------------------- F -------------------------------------------------- Oscillatoria_agardhii -------------------------------------------------- Pleurocapsa_sp. -------------------------------------------------- Microcystis_aeruginosa -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos -------------------------------------------------- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Bacillus_anthracis -------------------------------------------------- Bacillus_cereus -------------------------------------------------- Enterococcus_faecalis -------------------------------------------------- Enterococcus_faecium -------------------------------------------------- Listeria_monocytogenes -------------------------------------------------- Bacillus_subtilis -------------------------------------------------- Bacillus_subtilis_A -------------------------------------------------- Bacillus_halodurans -------------------------------------------------- Staphylococcus_aureus -------------------------------------------------- Staphylococcus_aureus_N315 -------------------------------------------------- Lactococcus_lactis_subsp._lactis -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Lactobacillus_acidophilus -------------------------------------------------- Mycoplasma_capricolum -------------------------------------------------- Mycoplasma_mycoides -------------------------------------------------- Erysipelothrix_rhusiopathiae_(alpha-P15) -------------------------------------------------- Clostridium_innocuum -------------------------------------------------- Mycoplasma_genitalium -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_gallisepticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Mycoplasma_hyopneumoniae -------------------------------------------------- Fusobacterium_necrophorum -------------------------------------------------- Fusobacterium_nucleatum_subsp._nucleatum -------------------------------------------------- Streptobacillus_moniliformis -------------------------------------------------- Clostridium_botulinum_type_f -------------------------------------------------- Clostridium_tetani -------------------------------------------------- Clostridium_perfringens -------------------------------------------------- Clostridium_difficile -------------------------------------------------- Eubacterium_brachy -------------------------------------------------- Epulopiscium_sp. -------------------------------------------------- Heliobacterium_chlorum -------------------------------------------------- Glycine_max -------------------------------------------------- Oenothera_berteroana -------------------------------------------------- Secale_cereale -------------------------------------------------- Triticum_aestivum -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Gluconacetobacter_liquefaciens -------------------------------------------------- Bradyrhizobium_japonicum -------------------------------------------------- Rhodoblastus_acidophilus -------------------------------------------------- Azorhizobium_caulinodans -------------------------------------------------- Bartonella_quintana -------------------------------------------------- Mesorhizobium_loti -------------------------------------------------- Agrobacterium_tumefaciens -------------------------------------------------- Bartonella_bacilliformis -------------------------------------------------- Bartonella_henselae -------------------------------------------------- Brucella_melitensis -------------------------------------------------- Rhodobium_orientis -------------------------------------------------- F -------------------------------------------------- Rickettsia_bellii -------------------------------------------------- Rickettsia_felis_URRWXCal2 -------------------------------------------------- Rickettsia_prowazekii -------------------------------------------------- Rickettsia_prowazekii_(str._Madrid_E) -------------------------------------------------- Rickettsia_rickettsii -------------------------------------------------- Acinetobacter_calcoaceticus -------------------------------------------------- Psychrobacter_pacificensis -------------------------------------------------- Chromohalobacter_marismortui -------------------------------------------------- F -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_sp. -------------------------------------------------- Pseudomonas_putida -------------------------------------------------- Coxiella_burnetii -------------------------------------------------- Methylococcus_capsulatus -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Allochromatium_vinosum -------------------------------------------------- Beggiatoa_sp._1401-13 -------------------------------------------------- Aeromonas_hydrophila -------------------------------------------------- Shewanella_putrefaciens -------------------------------------------------- Citrobacter_freundii -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Klebsiella_pneumoniae -------------------------------------------------- Plesiomonas_shigelloides -------------------------------------------------- Yersinia_pestis -------------------------------------------------- F -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Escherichia_coli_O157:H7 -------------------------------------------------- Escherichia_coli_O157:H7_EDL933 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli_K12 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Salmonella_typhimurium -------------------------------------------------- Serratia_marcescens -------------------------------------------------- Edwardsiella_tarda -------------------------------------------------- Proteus_vulgaris -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- F -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae_(operons_A-F) -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Xanthomonas_albilineans -------------------------------------------------- Xanthomonas_campestris -------------------------------------------------- Xylella_fastidiosa -------------------------------------------------- Dichelobacter_nodosus -------------------------------------------------- Francisella_tularensis -------------------------------------------------- Bordetella_parapertussis -------------------------------------------------- Bordetella_pertussis -------------------------------------------------- Bordetella_bronchiseptica -------------------------------------------------- unidentified_proteobacterium -------------------------------------------------- Burkholderia_mallei -------------------------------------------------- Burkholderia_sp. -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -------------------------------------------------- Comamonas_testosteroni -------------------------------------------------- Desulfovibrio_desulfuricans -------------------------------------------------- Myxococcus_xanthus -------------------------------------------------- Deferribacter_thermophilus -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_hermsii -------------------------------------------------- Spirochaeta_aurantia -------------------------------------------------- Treponema_pallidum_(rRNA_A) -------------------------------------------------- Leptonema_illini -------------------------------------------------- Leptospira_interrogans -------------------------------------------------- Chlamydia_trachomatis_D/UW-3/CX -------------------------------------------------- Chlamydia_trachomatis_L2/434/BU -------------------------------------------------- Chlamydia_muridarum -------------------------------------------------- Chlamydophila_pneumoniae_AR39 -------------------------------------------------- Chlamydophila_pneumoniae -------------------------------------------------- Chlamydophila_pneumoniae_J138 -------------------------------------------------- F -------------------------------------------------- Chlamydophila_psittaci -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- Porphyromonas_gingivalis -------------------------------------------------- Prosthecochloris_vibrioformis -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_sputorum -------------------------------------------------- F -------------------------------------------------- Helicobacter_pylori_J99 -------------------------------------------------- Helicobacter_pylori -------------------------------------------------- Acidobacterium_capsulatum -------------------------------------------------- Holophaga_foetida -------------------------------------------------- Arthrobacter_globiformis -------------------------------------------------- Micrococcus_luteus -------------------------------------------------- Frankia_sp. -------------------------------------------------- Streptomyces_bottropensis -------------------------------------------------- Streptomyces_scabiei -------------------------------------------------- Streptomyces_neyagawaensis -------------------------------------------------- F -------------------------------------------------- Streptomyces_sp. -------------------------------------------------- Streptomyces_acidiscabies -------------------------------------------------- Streptomyces_griseus -------------------------------------------------- Streptomyces_ornatus -------------------------------------------------- Streptomyces_subrutilus -------------------------------------------------- Streptomyces_bikiniensis -------------------------------------------------- Streptomyces_galbus -------------------------------------------------- Streptomyces_hygroscopicus -------------------------------------------------- Streptomyces_lincolnensis -------------------------------------------------- Streptomyces_coelicolor -------------------------------------------------- Streptomyces_tendae -------------------------------------------------- Streptomyces_ambofaciens -------------------------------------------------- Streptomyces_eurythermus -------------------------------------------------- Streptomyces_nodosus -------------------------------------------------- Streptomyces_sampsonii -------------------------------------------------- Streptomyces_glaucescens -------------------------------------------------- Streptomyces_pseudogriseolus -------------------------------------------------- Streptomyces_caelestis -------------------------------------------------- Streptomyces_bluensis -------------------------------------------------- Streptomyces_espinosus -------------------------------------------------- Streptomyces_mashuensis -------------------------------------------------- Streptomyces_rimosus -------------------------------------------------- Streptomyces_limosus -------------------------------------------------- Streptomyces_odorifer -------------------------------------------------- Streptomyces_felleus -------------------------------------------------- Streptomyces_albidoflavus -------------------------------------------------- Streptomyces_gougerotii -------------------------------------------------- Streptomyces_rutgersensis -------------------------------------------------- Streptomyces_intermedius -------------------------------------------------- F -------------------------------------------------- Streptomyces_thermoviolaceus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus -------------------------------------------------- Streptomyces_megasporus -------------------------------------------------- Streptomyces_thermolineatus -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_avium -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides -------------------------------------------------- Rhodococcus_erythropolis -------------------------------------------------- Corynebacterium_diphtheriae -------------------------------------------------- Actinomyces_israelii -------------------------------------------------- Brachyspira_hyodysenteriae -------------------------------------------------- Geotoga_subterranea -------------------------------------------------- Petrotoga_miotherma -------------------------------------------------- Brevinema_andersonii -------------------------------------------------- Herpetosiphon_aurantiacus -------------------------------------------------- F -------------------------------------------------- Aquifex_aeolicus -------------------------------------------------- Aquifex_pyrophilus -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- Thermus_aquaticus -------------------------------------------------- Thermomicrobium_roseum -------------------------------------------------- Pirellula_marina -------------------------------------------------- Pirellula_staleyi -------------------------------------------------- Planctomycetaceae_Schlesner_670 -------------------------------------------------- Gemmata_obscuriglobus -------------------------------------------------- Isosphaera_pallida -------------------------------------------------- Pyrococcus_abyssi -------------------------------------------------- Pyrococcus_horikoshii -------------------------------------------------- Pyrococcus_furiosus -------------------------------------------------- Thermococcus_celer -------------------------------------------------- Archaeoglobus_fulgidus -------------------------------------------------- Nanoarchaeum_equitans -------------------------------------------------- Aeropyrum_pernix_(str._K1) -------------------------------------------------- Pyrodictium_occultum -------------------------------------------------- Thermoproteus_tenax -------------------------------------------------- Sulfolobus_acidocaldarius -------------------------------------------------- Sulfolobus_solfataricus -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum -------------------------------------------------- Methanococcus_vannielii -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -------------------------------------------------- Natronorubrum_bangense -------------------------------------------------- Natronobacterium_innermongoliae -------------------------------------------------- Haloferax_volcanii -------------------------------------------------- Methanospirillum_hungatei -------------------------------------------------- Picrophilus_torridus_DSM_9790 -------------------------------------------------- Thermoplasma_acidophilum -------------------------------------------------- Giardia_ardeae -------------------------------------------------- Giardia_intestinalis -------------------------------------------------- Giardia_muris -------------------------------------------------- Amblyospora_bracteata -------------------------------------------------- Glomus_sp._W3349 -------------------------------------------------- Scutellospora_cerradensis -------------------------------------------------- Glomus_intraradices -------------------------------------------------- Smittium_culisetae -------------------------------------------------- Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus -------------------------------------------------- Tilletia_caries -------------------------------------------------- Mucor_circinelloides_f._lusitanicus -------------------------------------------------- Mucor_racemosus -------------------------------------------------- Rhizopus_oryzae -------------------------------------------------- Mytilus_edulis -------------------------------------------------- Placopecten_magellanicus -------------------------------------------------- Echinococcus_granulosus -------------------------------------------------- Drosophila_melanogaster -------------------------------------------------- Crossodonthina_koreana -------------------------------------------------- Androctonus_australis -------------------------------------------------- Okanagana_utahensis -------------------------------------------------- Artemia_salina -------------------------------------------------- Mus_musculus -------------------------------------------------- Rattus_norvegicus -------------------------------------------------- Homo_sapiens -------------------------------------------------- Oryctolagus_cuniculus -------------------------------------------------- Xenopus_borealis -------------------------------------------------- Xenopus_laevis -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Balamuthia_mandrillaris AUAGUUUAUUUGAUGGUUCCUUUAUUUUUACUACUUGGAUAACCGUAGUA Plasmodium_falciparum GUUAUAGUCUACUUGACAUUUUU--------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_vivax GUUAUAAUCUACUUGACAUUUUUUCUAUAAGGAUAACUACGGAAAAGCUG Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax AGUUAUAAUCUACUUGACAUUUUUUUCUAUAAGGAUAACUACGGAAAAGC Entamoeba_histolytica -------------------------------------------------- Ichthyophonus_hoferi GUUAUAGUUUAUUUGAUAAUAC---------------------------- Dermocystidium_sp. GUUAUAGUUUAUUUGAUAGUACCUUACUACUUGGAUAACCGUAGUAAU-- Sphaerothecum_destruens GUUAUAGUUUAUUUGAUAGUACC--------------------------- Acanthocoepsis_unguiculata GUUAUAGUUUAUUUGAUAGUGU---------------------------- Diaphanoeca_grandis GUUAUAGUUUAUUUGAUAGUAC---------------------------- Allomyces_macrogynus UUAUAAUUUAUUUGAUAGUACCCUUUUACUACUUGGAUAACCGUGGUAAU Blastocladiella_emersonii GUUAUAAUUUAUUUGAUAGUACCCCAUUACUACUUGGAUAACCGUGGUAA Candida_albicans -------------------------------------------------- Saccharomyces_cerevisiae UAUCGUUUAUUUGAUAGUUCCUUU-------------------------- Neurospora_crassa AUAGUUUAUUUGAUAGUACC------------------------------ Podospora_anserina AUCGUUUAUUUGAUAUUACC------------------------------ Coccidioides_immitis UAUCGUUUAUUUGAUAGUACC----------------------------- Leishmania_major -------------------------------------------------- Trypanosoma_cruzi -------------------------------------------------- Trypanosoma_brucei AAUCUGCCGCCAAAAUUUUGCGGUCUCCGCAUUACUGGAUAACUUGGCGA Pneumocystis_carinii AUAGUUUAUUUGAUAGUAUC------------------------------ Cryptococcus_neoformans_var._neoformans UUAUAGUUUAUUUGAUGGUAUC---------------------------- fungal_contaminant_of_QPX_isolate UUAUAGUUUAUUUGAUGGUAUC---------------------------- Ustilago_maydis UAUAGUUUAUUUGAUGUUUC------------------------------ Mnemiopsis_leidyi UAUCGUCUAUUUGAUUGUGCCC---------------------------- Tripedalia_cystophora UAUCGUUUACUUGAUCGUAUCCUUACAUGGAUAACUGUGGUAAU------ Microciona_prolifera GUUAUAGUUUAUUUGAUGGUUUC--------------------------- Psorospermium_haeckeli UAUCGUUUAUUUGAAUAUGAC----------------------------- Euglypha_rotunda AAUUAUUUAUUUGAUGGUACCUUACUACAUGGAUAACCGUGGUAAU---- Paulinella_chromatophora CAAUAAUUUAUUUGAUGGUUUCUUACUACUUGGAUAAC------------ Antirrhinum_majus UUAUAGUUUGUUUGAUGGUACCUGCUACUCGGAUAACCGUAGUAAU---- Sesamum_indicum UUAUAGUUUGUUUGAUGGUAC----------------------------- Digitalis_grandiflora UUAUAGUUUGUUUGAUGGUAC----------------------------- Plantago_lanceolata UUAUAGUUUGUUUGAUGGUACCUGCUACUCGGAUAACCGUAGUAAU---- Nicotiana_tabacum UUAUAGUUUGUUUGAUGGUAU----------------------------- Arabidopsis_thaliana UUAUAGUUUGUUUGAUGGUAA----------------------------- Sinapis_alba UUAUAGUUUGUUUGAUGGUAA----------------------------- Solanum_tuberosum -------------------------------------------------- Fragaria_x_ananassa -------------------------------------------------- Glycine_max -------------------------------------------------- Oryza_sativa -------------------------------------------------- Zea_mays -------------------------------------------------- F -------------------------------------------------- Genicularia_spirotaenia -------------------------------------------------- F -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- FChlorella'_luteoviridis -------------------------------------------------- Oxytricha_longa -------------------------------------------------- Paraurostyla_weissei -------------------------------------------------- Cyrtohymena_citrina -------------------------------------------------- Gastrostyla_steinii -------------------------------------------------- Pleurotricha_lanceolota -------------------------------------------------- Onychodromus_quadricornutus -------------------------------------------------- Stylonychia_lemnae -------------------------------------------------- Stylonychia_mytilus -------------------------------------------------- Engelmanniella_mobilis -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Uroleptus_gallina -------------------------------------------------- Uroleptus_pisces -------------------------------------------------- Paruroleptus_lepisma -------------------------------------------------- Urostyla_grandis -------------------------------------------------- Balantidium_coli -------------------------------------------------- Euplotes_aediculatus -------------------------------------------------- Tetrahymena_thermophila -------------------------------------------------- Bangia_sp._(Northwest_Territories/NWT) -------------------------------------------------- Bangia_sp._(Virgin_Islands/VIS7) -------------------------------------------------- Erythrotrichia_carnea -------------------------------------------------- Rhodochaete_parvula -------------------------------------------------- Compsopogon_coeruleus -------------------------------------------------- Porphyridium_aerugineum -------------------------------------------------- Rhodella_maculata -------------------------------------------------- Aulacoseira_ambigua -------------------------------------------------- Aulacoseira_baicalensis -------------------------------------------------- Stephanopyxis_nipponica -------------------------------------------------- Coscinodiscus_radiatus -------------------------------------------------- Corethron_criophilum -------------------------------------------------- Amphora_cf._capitellata -------------------------------------------------- Sellaphora_pupula_f._capitata -------------------------------------------------- Thalassiosira_antarctica -------------------------------------------------- Encyonema_triangulatum -------------------------------------------------- Achnanthes_bongranii -------------------------------------------------- F -------------------------------------------------- Diatoma_tenue -------------------------------------------------- Grammatophora_marina -------------------------------------------------- Thalassionema_sp._p474 -------------------------------------------------- Rhaphoneis_belgicae -------------------------------------------------- Undatella_sp._p446 -------------------------------------------------- Cymatosira_belgica -------------------------------------------------- Odontella_sinensis -------------------------------------------------- Ditylum_brightwellii -------------------------------------------------- Lithodesmium_undulatum -------------------------------------------------- Thalassiosira_eccentrica -------------------------------------------------- Thalassiosira_pseudonana -------------------------------------------------- Skeletonema_costatum -------------------------------------------------- Pleurosira_cf._laevis -------------------------------------------------- Lauderia_borealis -------------------------------------------------- F -------------------------------------------------- Bolidomonas_mediterranea -------------------------------------------------- Bolidomonas_pacifica -------------------------------------------------- Labyrinthuloides_minuta -------------------------------------------------- Leptocylindrus_danicus -------------------------------------------------- Chaetoceros_sp. -------------------------------------------------- Aphanomyces_invadans -------------------------------------------------- Lagenidium_giganteum -------------------------------------------------- Melosira_varians -------------------------------------------------- Blastocystis_hominis -------------------------------------------------- Perkinsus_marinus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Alexandrium_fundyense -------------------------------------------------- Babesia_bigemina -------------------------------------------------- Babesia_canis -------------------------------------------------- Babesia_sp._'Oklahoma_dog' -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_rodhaini -------------------------------------------------- Babesia_gibsoni -------------------------------------------------- Babesia_bovis -------------------------------------------------- Jakoba_libera -------------------------------------------------- Reclinomonas_americana -------------------------------------------------- Bonamia_ostreae -------------------------------------------------- Audouinella_dasyae -------------------------------------------------- Audouinella_hermannii -------------------------------------------------- Nemalion_helminthoides -------------------------------------------------- Batrachospermum_gelatinosum -------------------------------------------------- Nemalionopsis_tortuosa -------------------------------------------------- Thorea_hispida -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Nemalionopsis_shawii -------------------------------------------------- Balbiania_investiens -------------------------------------------------- Batrachospermum_macrosporum -------------------------------------------------- Ahnfeltia_plicata -------------------------------------------------- Corallina_officinalis -------------------------------------------------- Rhodogorgon_carriebowensis -------------------------------------------------- Bonnemaisonia_hamifera -------------------------------------------------- Gelidium_vagum -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Halymenia_plana -------------------------------------------------- Rhodymenia_leptophylla -------------------------------------------------- Plocamiocolax_pulvinata -------------------------------------------------- Ceramium_rubrum -------------------------------------------------- Gracilariopsis_sp. -------------------------------------------------- Bostrychia_moritziana -------------------------------------------------- Hildenbrandia_rubra -------------------------------------------------- Dixonielloa_grisea -------------------------------------------------- Naegleria_fowleri -------------------------------------------------- Naegleria_gruberi -------------------------------------------------- Hexamita_sp. -------------------------------------------------- Tritrichomonas_foetus -------------------------------------------------- Amblyospora_khaliulini -------------------------------------------------- Edhazardia_aedis -------------------------------------------------- Amblyospora_connecticus -------------------------------------------------- Intrapredatorus_barri -------------------------------------------------- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. -------------------------------------------------- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii -------------------------------------------------- Weiseria_palustris -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani -------------------------------------------------- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae -------------------------------------------------- Thelohania_solenopsae -------------------------------------------------- Visvesvaria_acridophagus -------------------------------------------------- Bacillidium_sp. -------------------------------------------------- Pseudonosema_cristatellae -------------------------------------------------- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum -------------------------------------------------- Pleistophora_mirandellae -------------------------------------------------- Trachipleistophora_hominis -------------------------------------------------- Vavraia_culicis -------------------------------------------------- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii -------------------------------------------------- F -------------------------------------------------- Dictyocoela_gammarellum -------------------------------------------------- Microsporidium_prosopium -------------------------------------------------- Antonospora_scoticae -------------------------------------------------- Paranosema_whitei -------------------------------------------------- #=GC SS_cons .................................................. Cynomorium_coccineum -------------------------------------------------- Cytinus_ruber -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Spinacia_oleracea -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Ricinus_communis -------------------------------------------------- F -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Pyramimonas_parkeae -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Pilostyles_thurberi -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Penicillium_chrysogenum -------------------------------------------------- Emericella_nidulans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Williopsis_saturnus_var._mrakii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Babesia_bovis -------------------------------------------------- Tetrahymena_pyriformis -------------------------------------------------- Suillus_sinuspaulianus -------------------------------------------------- Paramecium_tetraurelia -------------------------------------------------- Dictyostelium_discoideum -------------------------------------------------- Physarum_polycephalum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Hydnora_africana -------------------------------------------------- Codium_fragile -------------------------------------------------- Caulerpa_sertularioides -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cryptomonas_sp. -------------------------------------------------- Palmaria_palmata -------------------------------------------------- Heterosigma_akashiwo -------------------------------------------------- Skeletonema_pseudocostatum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Cyanidium_caldarium -------------------------------------------------- Emiliania_huxleyi -------------------------------------------------- Euglena_gracilis -------------------------------------------------- Anabaena_sp. -------------------------------------------------- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -------------------------------------------------- F -------------------------------------------------- Oscillatoria_agardhii -------------------------------------------------- Pleurocapsa_sp. -------------------------------------------------- Microcystis_aeruginosa -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos -------------------------------------------------- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Bacillus_anthracis -------------------------------------------------- Bacillus_cereus -------------------------------------------------- Enterococcus_faecalis -------------------------------------------------- Enterococcus_faecium -------------------------------------------------- Listeria_monocytogenes -------------------------------------------------- Bacillus_subtilis -------------------------------------------------- Bacillus_subtilis_A -------------------------------------------------- Bacillus_halodurans -------------------------------------------------- Staphylococcus_aureus -------------------------------------------------- Staphylococcus_aureus_N315 -------------------------------------------------- Lactococcus_lactis_subsp._lactis -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Lactobacillus_acidophilus -------------------------------------------------- Mycoplasma_capricolum -------------------------------------------------- Mycoplasma_mycoides -------------------------------------------------- Erysipelothrix_rhusiopathiae_(alpha-P15) -------------------------------------------------- Clostridium_innocuum -------------------------------------------------- Mycoplasma_genitalium -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_gallisepticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Mycoplasma_hyopneumoniae -------------------------------------------------- Fusobacterium_necrophorum -------------------------------------------------- Fusobacterium_nucleatum_subsp._nucleatum -------------------------------------------------- Streptobacillus_moniliformis -------------------------------------------------- Clostridium_botulinum_type_f -------------------------------------------------- Clostridium_tetani -------------------------------------------------- Clostridium_perfringens -------------------------------------------------- Clostridium_difficile -------------------------------------------------- Eubacterium_brachy -------------------------------------------------- Epulopiscium_sp. -------------------------------------------------- Heliobacterium_chlorum -------------------------------------------------- Glycine_max -------------------------------------------------- Oenothera_berteroana -------------------------------------------------- Secale_cereale -------------------------------------------------- Triticum_aestivum -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Gluconacetobacter_liquefaciens -------------------------------------------------- Bradyrhizobium_japonicum -------------------------------------------------- Rhodoblastus_acidophilus -------------------------------------------------- Azorhizobium_caulinodans -------------------------------------------------- Bartonella_quintana -------------------------------------------------- Mesorhizobium_loti -------------------------------------------------- Agrobacterium_tumefaciens -------------------------------------------------- Bartonella_bacilliformis -------------------------------------------------- Bartonella_henselae -------------------------------------------------- Brucella_melitensis -------------------------------------------------- Rhodobium_orientis -------------------------------------------------- F -------------------------------------------------- Rickettsia_bellii -------------------------------------------------- Rickettsia_felis_URRWXCal2 -------------------------------------------------- Rickettsia_prowazekii -------------------------------------------------- Rickettsia_prowazekii_(str._Madrid_E) -------------------------------------------------- Rickettsia_rickettsii -------------------------------------------------- Acinetobacter_calcoaceticus -------------------------------------------------- Psychrobacter_pacificensis -------------------------------------------------- Chromohalobacter_marismortui -------------------------------------------------- F -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_sp. -------------------------------------------------- Pseudomonas_putida -------------------------------------------------- Coxiella_burnetii -------------------------------------------------- Methylococcus_capsulatus -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Allochromatium_vinosum -------------------------------------------------- Beggiatoa_sp._1401-13 -------------------------------------------------- Aeromonas_hydrophila -------------------------------------------------- Shewanella_putrefaciens -------------------------------------------------- Citrobacter_freundii -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Klebsiella_pneumoniae -------------------------------------------------- Plesiomonas_shigelloides -------------------------------------------------- Yersinia_pestis -------------------------------------------------- F -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Escherichia_coli_O157:H7 -------------------------------------------------- Escherichia_coli_O157:H7_EDL933 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli_K12 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Salmonella_typhimurium -------------------------------------------------- Serratia_marcescens -------------------------------------------------- Edwardsiella_tarda -------------------------------------------------- Proteus_vulgaris -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- F -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae_(operons_A-F) -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Xanthomonas_albilineans -------------------------------------------------- Xanthomonas_campestris -------------------------------------------------- Xylella_fastidiosa -------------------------------------------------- Dichelobacter_nodosus -------------------------------------------------- Francisella_tularensis -------------------------------------------------- Bordetella_parapertussis -------------------------------------------------- Bordetella_pertussis -------------------------------------------------- Bordetella_bronchiseptica -------------------------------------------------- unidentified_proteobacterium -------------------------------------------------- Burkholderia_mallei -------------------------------------------------- Burkholderia_sp. -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -------------------------------------------------- Comamonas_testosteroni -------------------------------------------------- Desulfovibrio_desulfuricans -------------------------------------------------- Myxococcus_xanthus -------------------------------------------------- Deferribacter_thermophilus -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_hermsii -------------------------------------------------- Spirochaeta_aurantia -------------------------------------------------- Treponema_pallidum_(rRNA_A) -------------------------------------------------- Leptonema_illini -------------------------------------------------- Leptospira_interrogans -------------------------------------------------- Chlamydia_trachomatis_D/UW-3/CX -------------------------------------------------- Chlamydia_trachomatis_L2/434/BU -------------------------------------------------- Chlamydia_muridarum -------------------------------------------------- Chlamydophila_pneumoniae_AR39 -------------------------------------------------- Chlamydophila_pneumoniae -------------------------------------------------- Chlamydophila_pneumoniae_J138 -------------------------------------------------- F -------------------------------------------------- Chlamydophila_psittaci -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- Porphyromonas_gingivalis -------------------------------------------------- Prosthecochloris_vibrioformis -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_sputorum -------------------------------------------------- F -------------------------------------------------- Helicobacter_pylori_J99 -------------------------------------------------- Helicobacter_pylori -------------------------------------------------- Acidobacterium_capsulatum -------------------------------------------------- Holophaga_foetida -------------------------------------------------- Arthrobacter_globiformis -------------------------------------------------- Micrococcus_luteus -------------------------------------------------- Frankia_sp. -------------------------------------------------- Streptomyces_bottropensis -------------------------------------------------- Streptomyces_scabiei -------------------------------------------------- Streptomyces_neyagawaensis -------------------------------------------------- F -------------------------------------------------- Streptomyces_sp. -------------------------------------------------- Streptomyces_acidiscabies -------------------------------------------------- Streptomyces_griseus -------------------------------------------------- Streptomyces_ornatus -------------------------------------------------- Streptomyces_subrutilus -------------------------------------------------- Streptomyces_bikiniensis -------------------------------------------------- Streptomyces_galbus -------------------------------------------------- Streptomyces_hygroscopicus -------------------------------------------------- Streptomyces_lincolnensis -------------------------------------------------- Streptomyces_coelicolor -------------------------------------------------- Streptomyces_tendae -------------------------------------------------- Streptomyces_ambofaciens -------------------------------------------------- Streptomyces_eurythermus -------------------------------------------------- Streptomyces_nodosus -------------------------------------------------- Streptomyces_sampsonii -------------------------------------------------- Streptomyces_glaucescens -------------------------------------------------- Streptomyces_pseudogriseolus -------------------------------------------------- Streptomyces_caelestis -------------------------------------------------- Streptomyces_bluensis -------------------------------------------------- Streptomyces_espinosus -------------------------------------------------- Streptomyces_mashuensis -------------------------------------------------- Streptomyces_rimosus -------------------------------------------------- Streptomyces_limosus -------------------------------------------------- Streptomyces_odorifer -------------------------------------------------- Streptomyces_felleus -------------------------------------------------- Streptomyces_albidoflavus -------------------------------------------------- Streptomyces_gougerotii -------------------------------------------------- Streptomyces_rutgersensis -------------------------------------------------- Streptomyces_intermedius -------------------------------------------------- F -------------------------------------------------- Streptomyces_thermoviolaceus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus -------------------------------------------------- Streptomyces_megasporus -------------------------------------------------- Streptomyces_thermolineatus -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_avium -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides -------------------------------------------------- Rhodococcus_erythropolis -------------------------------------------------- Corynebacterium_diphtheriae -------------------------------------------------- Actinomyces_israelii -------------------------------------------------- Brachyspira_hyodysenteriae -------------------------------------------------- Geotoga_subterranea -------------------------------------------------- Petrotoga_miotherma -------------------------------------------------- Brevinema_andersonii -------------------------------------------------- Herpetosiphon_aurantiacus -------------------------------------------------- F -------------------------------------------------- Aquifex_aeolicus -------------------------------------------------- Aquifex_pyrophilus -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- Thermus_aquaticus -------------------------------------------------- Thermomicrobium_roseum -------------------------------------------------- Pirellula_marina -------------------------------------------------- Pirellula_staleyi -------------------------------------------------- Planctomycetaceae_Schlesner_670 -------------------------------------------------- Gemmata_obscuriglobus -------------------------------------------------- Isosphaera_pallida -------------------------------------------------- Pyrococcus_abyssi -------------------------------------------------- Pyrococcus_horikoshii -------------------------------------------------- Pyrococcus_furiosus -------------------------------------------------- Thermococcus_celer -------------------------------------------------- Archaeoglobus_fulgidus -------------------------------------------------- Nanoarchaeum_equitans -------------------------------------------------- Aeropyrum_pernix_(str._K1) -------------------------------------------------- Pyrodictium_occultum -------------------------------------------------- Thermoproteus_tenax -------------------------------------------------- Sulfolobus_acidocaldarius -------------------------------------------------- Sulfolobus_solfataricus -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum -------------------------------------------------- Methanococcus_vannielii -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -------------------------------------------------- Natronorubrum_bangense -------------------------------------------------- Natronobacterium_innermongoliae -------------------------------------------------- Haloferax_volcanii -------------------------------------------------- Methanospirillum_hungatei -------------------------------------------------- Picrophilus_torridus_DSM_9790 -------------------------------------------------- Thermoplasma_acidophilum -------------------------------------------------- Giardia_ardeae -------------------------------------------------- Giardia_intestinalis -------------------------------------------------- Giardia_muris -------------------------------------------------- Amblyospora_bracteata -------------------------------------------------- Glomus_sp._W3349 -------------------------------------------------- Scutellospora_cerradensis -------------------------------------------------- Glomus_intraradices -------------------------------------------------- Smittium_culisetae -------------------------------------------------- Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus -------------------------------------------------- Tilletia_caries -------------------------------------------------- Mucor_circinelloides_f._lusitanicus -------------------------------------------------- Mucor_racemosus -------------------------------------------------- Rhizopus_oryzae -------------------------------------------------- Mytilus_edulis -------------------------------------------------- Placopecten_magellanicus -------------------------------------------------- Echinococcus_granulosus -------------------------------------------------- Drosophila_melanogaster -------------------------------------------------- Crossodonthina_koreana -------------------------------------------------- Androctonus_australis -------------------------------------------------- Okanagana_utahensis -------------------------------------------------- Artemia_salina -------------------------------------------------- Mus_musculus -------------------------------------------------- Rattus_norvegicus -------------------------------------------------- Homo_sapiens -------------------------------------------------- Oryctolagus_cuniculus -------------------------------------------------- Xenopus_borealis -------------------------------------------------- Xenopus_laevis -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Balamuthia_mandrillaris AUUCUAGAGCUAAUACAUGCCCAAAGUCCCGACUGGGGGUCGCAAGGCUC Plasmodium_falciparum -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_vivax UAGCUAAUAC---------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax UGUAGCUAAUACUUGCUUUAAUGCUCUCGACGAAUGUCUUGGGCAUGUAC Entamoeba_histolytica -------------------------------------------------- Ichthyophonus_hoferi -------------------------------------------------- Dermocystidium_sp. -------------------------------------------------- Sphaerothecum_destruens -------------------------------------------------- Acanthocoepsis_unguiculata -------------------------------------------------- Diaphanoeca_grandis -------------------------------------------------- Allomyces_macrogynus U------------------------------------------------- Blastocladiella_emersonii UU------------------------------------------------ Candida_albicans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Coccidioides_immitis -------------------------------------------------- Leishmania_major -------------------------------------------------- Trypanosoma_cruzi -------------------------------------------------- Trypanosoma_brucei AACGCCAAGCUAAUACAUGAACCAAUCGGACGCUCUCUUUUUCUAUGUCG Pneumocystis_carinii -------------------------------------------------- Cryptococcus_neoformans_var._neoformans -------------------------------------------------- fungal_contaminant_of_QPX_isolate -------------------------------------------------- Ustilago_maydis -------------------------------------------------- Mnemiopsis_leidyi -------------------------------------------------- Tripedalia_cystophora -------------------------------------------------- Microciona_prolifera -------------------------------------------------- Psorospermium_haeckeli -------------------------------------------------- Euglypha_rotunda -------------------------------------------------- Paulinella_chromatophora -------------------------------------------------- Antirrhinum_majus -------------------------------------------------- Sesamum_indicum -------------------------------------------------- Digitalis_grandiflora -------------------------------------------------- Plantago_lanceolata -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Arabidopsis_thaliana -------------------------------------------------- Sinapis_alba -------------------------------------------------- Solanum_tuberosum -------------------------------------------------- Fragaria_x_ananassa -------------------------------------------------- Glycine_max -------------------------------------------------- Oryza_sativa -------------------------------------------------- Zea_mays -------------------------------------------------- F -------------------------------------------------- Genicularia_spirotaenia -------------------------------------------------- F -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- FChlorella'_luteoviridis -------------------------------------------------- Oxytricha_longa -------------------------------------------------- Paraurostyla_weissei -------------------------------------------------- Cyrtohymena_citrina -------------------------------------------------- Gastrostyla_steinii -------------------------------------------------- Pleurotricha_lanceolota -------------------------------------------------- Onychodromus_quadricornutus -------------------------------------------------- Stylonychia_lemnae -------------------------------------------------- Stylonychia_mytilus -------------------------------------------------- Engelmanniella_mobilis -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Uroleptus_gallina -------------------------------------------------- Uroleptus_pisces -------------------------------------------------- Paruroleptus_lepisma -------------------------------------------------- Urostyla_grandis -------------------------------------------------- Balantidium_coli -------------------------------------------------- Euplotes_aediculatus -------------------------------------------------- Tetrahymena_thermophila -------------------------------------------------- Bangia_sp._(Northwest_Territories/NWT) -------------------------------------------------- Bangia_sp._(Virgin_Islands/VIS7) -------------------------------------------------- Erythrotrichia_carnea -------------------------------------------------- Rhodochaete_parvula -------------------------------------------------- Compsopogon_coeruleus -------------------------------------------------- Porphyridium_aerugineum -------------------------------------------------- Rhodella_maculata -------------------------------------------------- Aulacoseira_ambigua -------------------------------------------------- Aulacoseira_baicalensis -------------------------------------------------- Stephanopyxis_nipponica -------------------------------------------------- Coscinodiscus_radiatus -------------------------------------------------- Corethron_criophilum -------------------------------------------------- Amphora_cf._capitellata -------------------------------------------------- Sellaphora_pupula_f._capitata -------------------------------------------------- Thalassiosira_antarctica -------------------------------------------------- Encyonema_triangulatum -------------------------------------------------- Achnanthes_bongranii -------------------------------------------------- F -------------------------------------------------- Diatoma_tenue -------------------------------------------------- Grammatophora_marina -------------------------------------------------- Thalassionema_sp._p474 -------------------------------------------------- Rhaphoneis_belgicae -------------------------------------------------- Undatella_sp._p446 -------------------------------------------------- Cymatosira_belgica -------------------------------------------------- Odontella_sinensis -------------------------------------------------- Ditylum_brightwellii -------------------------------------------------- Lithodesmium_undulatum -------------------------------------------------- Thalassiosira_eccentrica -------------------------------------------------- Thalassiosira_pseudonana -------------------------------------------------- Skeletonema_costatum -------------------------------------------------- Pleurosira_cf._laevis -------------------------------------------------- Lauderia_borealis -------------------------------------------------- F -------------------------------------------------- Bolidomonas_mediterranea -------------------------------------------------- Bolidomonas_pacifica -------------------------------------------------- Labyrinthuloides_minuta -------------------------------------------------- Leptocylindrus_danicus -------------------------------------------------- Chaetoceros_sp. -------------------------------------------------- Aphanomyces_invadans -------------------------------------------------- Lagenidium_giganteum -------------------------------------------------- Melosira_varians -------------------------------------------------- Blastocystis_hominis -------------------------------------------------- Perkinsus_marinus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Alexandrium_fundyense -------------------------------------------------- Babesia_bigemina -------------------------------------------------- Babesia_canis -------------------------------------------------- Babesia_sp._'Oklahoma_dog' -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_rodhaini -------------------------------------------------- Babesia_gibsoni -------------------------------------------------- Babesia_bovis -------------------------------------------------- Jakoba_libera -------------------------------------------------- Reclinomonas_americana -------------------------------------------------- Bonamia_ostreae -------------------------------------------------- Audouinella_dasyae -------------------------------------------------- Audouinella_hermannii -------------------------------------------------- Nemalion_helminthoides -------------------------------------------------- Batrachospermum_gelatinosum -------------------------------------------------- Nemalionopsis_tortuosa -------------------------------------------------- Thorea_hispida -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Nemalionopsis_shawii -------------------------------------------------- Balbiania_investiens -------------------------------------------------- Batrachospermum_macrosporum -------------------------------------------------- Ahnfeltia_plicata -------------------------------------------------- Corallina_officinalis -------------------------------------------------- Rhodogorgon_carriebowensis -------------------------------------------------- Bonnemaisonia_hamifera -------------------------------------------------- Gelidium_vagum -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Halymenia_plana -------------------------------------------------- Rhodymenia_leptophylla -------------------------------------------------- Plocamiocolax_pulvinata -------------------------------------------------- Ceramium_rubrum -------------------------------------------------- Gracilariopsis_sp. -------------------------------------------------- Bostrychia_moritziana -------------------------------------------------- Hildenbrandia_rubra -------------------------------------------------- Dixonielloa_grisea -------------------------------------------------- Naegleria_fowleri -------------------------------------------------- Naegleria_gruberi -------------------------------------------------- Hexamita_sp. -------------------------------------------------- Tritrichomonas_foetus -------------------------------------------------- Amblyospora_khaliulini -------------------------------------------------- Edhazardia_aedis -------------------------------------------------- Amblyospora_connecticus -------------------------------------------------- Intrapredatorus_barri -------------------------------------------------- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. -------------------------------------------------- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii -------------------------------------------------- Weiseria_palustris -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani -------------------------------------------------- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae -------------------------------------------------- Thelohania_solenopsae -------------------------------------------------- Visvesvaria_acridophagus -------------------------------------------------- Bacillidium_sp. -------------------------------------------------- Pseudonosema_cristatellae -------------------------------------------------- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum -------------------------------------------------- Pleistophora_mirandellae -------------------------------------------------- Trachipleistophora_hominis -------------------------------------------------- Vavraia_culicis -------------------------------------------------- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii -------------------------------------------------- F -------------------------------------------------- Dictyocoela_gammarellum -------------------------------------------------- Microsporidium_prosopium -------------------------------------------------- Antonospora_scoticae -------------------------------------------------- Paranosema_whitei -------------------------------------------------- #=GC SS_cons .................................................. Cynomorium_coccineum -------------------------------------------------- Cytinus_ruber -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Spinacia_oleracea -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Ricinus_communis -------------------------------------------------- F -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Pyramimonas_parkeae -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Pilostyles_thurberi -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Penicillium_chrysogenum -------------------------------------------------- Emericella_nidulans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Williopsis_saturnus_var._mrakii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Babesia_bovis -------------------------------------------------- Tetrahymena_pyriformis -------------------------------------------------- Suillus_sinuspaulianus -------------------------------------------------- Paramecium_tetraurelia -------------------------------------------------- Dictyostelium_discoideum -------------------------------------------------- Physarum_polycephalum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Hydnora_africana -------------------------------------------------- Codium_fragile -------------------------------------------------- Caulerpa_sertularioides -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cryptomonas_sp. -------------------------------------------------- Palmaria_palmata -------------------------------------------------- Heterosigma_akashiwo -------------------------------------------------- Skeletonema_pseudocostatum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Cyanidium_caldarium -------------------------------------------------- Emiliania_huxleyi -------------------------------------------------- Euglena_gracilis -------------------------------------------------- Anabaena_sp. -------------------------------------------------- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -------------------------------------------------- F -------------------------------------------------- Oscillatoria_agardhii -------------------------------------------------- Pleurocapsa_sp. -------------------------------------------------- Microcystis_aeruginosa -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos -------------------------------------------------- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Bacillus_anthracis -------------------------------------------------- Bacillus_cereus -------------------------------------------------- Enterococcus_faecalis -------------------------------------------------- Enterococcus_faecium -------------------------------------------------- Listeria_monocytogenes -------------------------------------------------- Bacillus_subtilis -------------------------------------------------- Bacillus_subtilis_A -------------------------------------------------- Bacillus_halodurans -------------------------------------------------- Staphylococcus_aureus -------------------------------------------------- Staphylococcus_aureus_N315 -------------------------------------------------- Lactococcus_lactis_subsp._lactis -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Lactobacillus_acidophilus -------------------------------------------------- Mycoplasma_capricolum -------------------------------------------------- Mycoplasma_mycoides -------------------------------------------------- Erysipelothrix_rhusiopathiae_(alpha-P15) -------------------------------------------------- Clostridium_innocuum -------------------------------------------------- Mycoplasma_genitalium -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_gallisepticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Mycoplasma_hyopneumoniae -------------------------------------------------- Fusobacterium_necrophorum -------------------------------------------------- Fusobacterium_nucleatum_subsp._nucleatum -------------------------------------------------- Streptobacillus_moniliformis -------------------------------------------------- Clostridium_botulinum_type_f -------------------------------------------------- Clostridium_tetani -------------------------------------------------- Clostridium_perfringens -------------------------------------------------- Clostridium_difficile -------------------------------------------------- Eubacterium_brachy -------------------------------------------------- Epulopiscium_sp. -------------------------------------------------- Heliobacterium_chlorum -------------------------------------------------- Glycine_max -------------------------------------------------- Oenothera_berteroana -------------------------------------------------- Secale_cereale -------------------------------------------------- Triticum_aestivum -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Gluconacetobacter_liquefaciens -------------------------------------------------- Bradyrhizobium_japonicum -------------------------------------------------- Rhodoblastus_acidophilus -------------------------------------------------- Azorhizobium_caulinodans -------------------------------------------------- Bartonella_quintana -------------------------------------------------- Mesorhizobium_loti -------------------------------------------------- Agrobacterium_tumefaciens -------------------------------------------------- Bartonella_bacilliformis -------------------------------------------------- Bartonella_henselae -------------------------------------------------- Brucella_melitensis -------------------------------------------------- Rhodobium_orientis -------------------------------------------------- F -------------------------------------------------- Rickettsia_bellii -------------------------------------------------- Rickettsia_felis_URRWXCal2 -------------------------------------------------- Rickettsia_prowazekii -------------------------------------------------- Rickettsia_prowazekii_(str._Madrid_E) -------------------------------------------------- Rickettsia_rickettsii -------------------------------------------------- Acinetobacter_calcoaceticus -------------------------------------------------- Psychrobacter_pacificensis -------------------------------------------------- Chromohalobacter_marismortui -------------------------------------------------- F -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_sp. -------------------------------------------------- Pseudomonas_putida -------------------------------------------------- Coxiella_burnetii -------------------------------------------------- Methylococcus_capsulatus -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Allochromatium_vinosum -------------------------------------------------- Beggiatoa_sp._1401-13 -------------------------------------------------- Aeromonas_hydrophila -------------------------------------------------- Shewanella_putrefaciens -------------------------------------------------- Citrobacter_freundii -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Klebsiella_pneumoniae -------------------------------------------------- Plesiomonas_shigelloides -------------------------------------------------- Yersinia_pestis -------------------------------------------------- F -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Escherichia_coli_O157:H7 -------------------------------------------------- Escherichia_coli_O157:H7_EDL933 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli_K12 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Salmonella_typhimurium -------------------------------------------------- Serratia_marcescens -------------------------------------------------- Edwardsiella_tarda -------------------------------------------------- Proteus_vulgaris -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- F -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae_(operons_A-F) -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Xanthomonas_albilineans -------------------------------------------------- Xanthomonas_campestris -------------------------------------------------- Xylella_fastidiosa -------------------------------------------------- Dichelobacter_nodosus -------------------------------------------------- Francisella_tularensis -------------------------------------------------- Bordetella_parapertussis -------------------------------------------------- Bordetella_pertussis -------------------------------------------------- Bordetella_bronchiseptica -------------------------------------------------- unidentified_proteobacterium -------------------------------------------------- Burkholderia_mallei -------------------------------------------------- Burkholderia_sp. -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -------------------------------------------------- Comamonas_testosteroni -------------------------------------------------- Desulfovibrio_desulfuricans -------------------------------------------------- Myxococcus_xanthus -------------------------------------------------- Deferribacter_thermophilus -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_hermsii -------------------------------------------------- Spirochaeta_aurantia -------------------------------------------------- Treponema_pallidum_(rRNA_A) -------------------------------------------------- Leptonema_illini -------------------------------------------------- Leptospira_interrogans -------------------------------------------------- Chlamydia_trachomatis_D/UW-3/CX -------------------------------------------------- Chlamydia_trachomatis_L2/434/BU -------------------------------------------------- Chlamydia_muridarum -------------------------------------------------- Chlamydophila_pneumoniae_AR39 -------------------------------------------------- Chlamydophila_pneumoniae -------------------------------------------------- Chlamydophila_pneumoniae_J138 -------------------------------------------------- F -------------------------------------------------- Chlamydophila_psittaci -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- Porphyromonas_gingivalis -------------------------------------------------- Prosthecochloris_vibrioformis -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_sputorum -------------------------------------------------- F -------------------------------------------------- Helicobacter_pylori_J99 -------------------------------------------------- Helicobacter_pylori -------------------------------------------------- Acidobacterium_capsulatum -------------------------------------------------- Holophaga_foetida -------------------------------------------------- Arthrobacter_globiformis -------------------------------------------------- Micrococcus_luteus -------------------------------------------------- Frankia_sp. -------------------------------------------------- Streptomyces_bottropensis -------------------------------------------------- Streptomyces_scabiei -------------------------------------------------- Streptomyces_neyagawaensis -------------------------------------------------- F -------------------------------------------------- Streptomyces_sp. -------------------------------------------------- Streptomyces_acidiscabies -------------------------------------------------- Streptomyces_griseus -------------------------------------------------- Streptomyces_ornatus -------------------------------------------------- Streptomyces_subrutilus -------------------------------------------------- Streptomyces_bikiniensis -------------------------------------------------- Streptomyces_galbus -------------------------------------------------- Streptomyces_hygroscopicus -------------------------------------------------- Streptomyces_lincolnensis -------------------------------------------------- Streptomyces_coelicolor -------------------------------------------------- Streptomyces_tendae -------------------------------------------------- Streptomyces_ambofaciens -------------------------------------------------- Streptomyces_eurythermus -------------------------------------------------- Streptomyces_nodosus -------------------------------------------------- Streptomyces_sampsonii -------------------------------------------------- Streptomyces_glaucescens -------------------------------------------------- Streptomyces_pseudogriseolus -------------------------------------------------- Streptomyces_caelestis -------------------------------------------------- Streptomyces_bluensis -------------------------------------------------- Streptomyces_espinosus -------------------------------------------------- Streptomyces_mashuensis -------------------------------------------------- Streptomyces_rimosus -------------------------------------------------- Streptomyces_limosus -------------------------------------------------- Streptomyces_odorifer -------------------------------------------------- Streptomyces_felleus -------------------------------------------------- Streptomyces_albidoflavus -------------------------------------------------- Streptomyces_gougerotii -------------------------------------------------- Streptomyces_rutgersensis -------------------------------------------------- Streptomyces_intermedius -------------------------------------------------- F -------------------------------------------------- Streptomyces_thermoviolaceus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus -------------------------------------------------- Streptomyces_megasporus -------------------------------------------------- Streptomyces_thermolineatus -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_avium -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides -------------------------------------------------- Rhodococcus_erythropolis -------------------------------------------------- Corynebacterium_diphtheriae -------------------------------------------------- Actinomyces_israelii -------------------------------------------------- Brachyspira_hyodysenteriae -------------------------------------------------- Geotoga_subterranea -------------------------------------------------- Petrotoga_miotherma -------------------------------------------------- Brevinema_andersonii -------------------------------------------------- Herpetosiphon_aurantiacus -------------------------------------------------- F -------------------------------------------------- Aquifex_aeolicus -------------------------------------------------- Aquifex_pyrophilus -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- Thermus_aquaticus -------------------------------------------------- Thermomicrobium_roseum -------------------------------------------------- Pirellula_marina -------------------------------------------------- Pirellula_staleyi -------------------------------------------------- Planctomycetaceae_Schlesner_670 -------------------------------------------------- Gemmata_obscuriglobus -------------------------------------------------- Isosphaera_pallida -------------------------------------------------- Pyrococcus_abyssi -------------------------------------------------- Pyrococcus_horikoshii -------------------------------------------------- Pyrococcus_furiosus -------------------------------------------------- Thermococcus_celer -------------------------------------------------- Archaeoglobus_fulgidus -------------------------------------------------- Nanoarchaeum_equitans -------------------------------------------------- Aeropyrum_pernix_(str._K1) -------------------------------------------------- Pyrodictium_occultum -------------------------------------------------- Thermoproteus_tenax -------------------------------------------------- Sulfolobus_acidocaldarius -------------------------------------------------- Sulfolobus_solfataricus -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum -------------------------------------------------- Methanococcus_vannielii -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -------------------------------------------------- Natronorubrum_bangense -------------------------------------------------- Natronobacterium_innermongoliae -------------------------------------------------- Haloferax_volcanii -------------------------------------------------- Methanospirillum_hungatei -------------------------------------------------- Picrophilus_torridus_DSM_9790 -------------------------------------------------- Thermoplasma_acidophilum -------------------------------------------------- Giardia_ardeae -------------------------------------------------- Giardia_intestinalis -------------------------------------------------- Giardia_muris -------------------------------------------------- Amblyospora_bracteata -------------------------------------------------- Glomus_sp._W3349 -------------------------------------------------- Scutellospora_cerradensis -------------------------------------------------- Glomus_intraradices -------------------------------------------------- Smittium_culisetae -------------------------------------------------- Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus -------------------------------------------------- Tilletia_caries -------------------------------------------------- Mucor_circinelloides_f._lusitanicus -------------------------------------------------- Mucor_racemosus -------------------------------------------------- Rhizopus_oryzae -------------------------------------------------- Mytilus_edulis -------------------------------------------------- Placopecten_magellanicus -------------------------------------------------- Echinococcus_granulosus -------------------------------------------------- Drosophila_melanogaster -------------------------------------------------- Crossodonthina_koreana -------------------------------------------------- Androctonus_australis -------------------------------------------------- Okanagana_utahensis -------------------------------------------------- Artemia_salina -------------------------------------------------- Mus_musculus -------------------------------------------------- Rattus_norvegicus -------------------------------------------------- Homo_sapiens -------------------------------------------------- Oryctolagus_cuniculus -------------------------------------------------- Xenopus_borealis -------------------------------------------------- Xenopus_laevis -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Balamuthia_mandrillaris UCUGGAAGGGAUGUAUUUAUUAGAUA------------------------ Plasmodium_falciparum -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax U------------------------------------------------- Entamoeba_histolytica -------------------------------------------------- Ichthyophonus_hoferi -------------------------------------------------- Dermocystidium_sp. -------------------------------------------------- Sphaerothecum_destruens -------------------------------------------------- Acanthocoepsis_unguiculata -------------------------------------------------- Diaphanoeca_grandis -------------------------------------------------- Allomyces_macrogynus -------------------------------------------------- Blastocladiella_emersonii -------------------------------------------------- Candida_albicans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Coccidioides_immitis -------------------------------------------------- Leishmania_major -------------------------------------------------- Trypanosoma_cruzi -------------------------------------------------- Trypanosoma_brucei CGGCUUGUGUUUACGCACUUGUCGUGGCGAUGAGACGUCCAGCGAAUGAA Pneumocystis_carinii -------------------------------------------------- Cryptococcus_neoformans_var._neoformans -------------------------------------------------- fungal_contaminant_of_QPX_isolate -------------------------------------------------- Ustilago_maydis -------------------------------------------------- Mnemiopsis_leidyi -------------------------------------------------- Tripedalia_cystophora -------------------------------------------------- Microciona_prolifera -------------------------------------------------- Psorospermium_haeckeli -------------------------------------------------- Euglypha_rotunda -------------------------------------------------- Paulinella_chromatophora -------------------------------------------------- Antirrhinum_majus -------------------------------------------------- Sesamum_indicum -------------------------------------------------- Digitalis_grandiflora -------------------------------------------------- Plantago_lanceolata -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Arabidopsis_thaliana -------------------------------------------------- Sinapis_alba -------------------------------------------------- Solanum_tuberosum -------------------------------------------------- Fragaria_x_ananassa -------------------------------------------------- Glycine_max -------------------------------------------------- Oryza_sativa -------------------------------------------------- Zea_mays -------------------------------------------------- F -------------------------------------------------- Genicularia_spirotaenia -------------------------------------------------- F -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- FChlorella'_luteoviridis -------------------------------------------------- Oxytricha_longa -------------------------------------------------- Paraurostyla_weissei -------------------------------------------------- Cyrtohymena_citrina -------------------------------------------------- Gastrostyla_steinii -------------------------------------------------- Pleurotricha_lanceolota -------------------------------------------------- Onychodromus_quadricornutus -------------------------------------------------- Stylonychia_lemnae -------------------------------------------------- Stylonychia_mytilus -------------------------------------------------- Engelmanniella_mobilis -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Uroleptus_gallina -------------------------------------------------- Uroleptus_pisces -------------------------------------------------- Paruroleptus_lepisma -------------------------------------------------- Urostyla_grandis -------------------------------------------------- Balantidium_coli -------------------------------------------------- Euplotes_aediculatus -------------------------------------------------- Tetrahymena_thermophila -------------------------------------------------- Bangia_sp._(Northwest_Territories/NWT) -------------------------------------------------- Bangia_sp._(Virgin_Islands/VIS7) -------------------------------------------------- Erythrotrichia_carnea -------------------------------------------------- Rhodochaete_parvula -------------------------------------------------- Compsopogon_coeruleus -------------------------------------------------- Porphyridium_aerugineum -------------------------------------------------- Rhodella_maculata -------------------------------------------------- Aulacoseira_ambigua -------------------------------------------------- Aulacoseira_baicalensis -------------------------------------------------- Stephanopyxis_nipponica -------------------------------------------------- Coscinodiscus_radiatus -------------------------------------------------- Corethron_criophilum -------------------------------------------------- Amphora_cf._capitellata -------------------------------------------------- Sellaphora_pupula_f._capitata -------------------------------------------------- Thalassiosira_antarctica -------------------------------------------------- Encyonema_triangulatum -------------------------------------------------- Achnanthes_bongranii -------------------------------------------------- F -------------------------------------------------- Diatoma_tenue -------------------------------------------------- Grammatophora_marina -------------------------------------------------- Thalassionema_sp._p474 -------------------------------------------------- Rhaphoneis_belgicae -------------------------------------------------- Undatella_sp._p446 -------------------------------------------------- Cymatosira_belgica -------------------------------------------------- Odontella_sinensis -------------------------------------------------- Ditylum_brightwellii -------------------------------------------------- Lithodesmium_undulatum -------------------------------------------------- Thalassiosira_eccentrica -------------------------------------------------- Thalassiosira_pseudonana -------------------------------------------------- Skeletonema_costatum -------------------------------------------------- Pleurosira_cf._laevis -------------------------------------------------- Lauderia_borealis -------------------------------------------------- F -------------------------------------------------- Bolidomonas_mediterranea -------------------------------------------------- Bolidomonas_pacifica -------------------------------------------------- Labyrinthuloides_minuta -------------------------------------------------- Leptocylindrus_danicus -------------------------------------------------- Chaetoceros_sp. -------------------------------------------------- Aphanomyces_invadans -------------------------------------------------- Lagenidium_giganteum -------------------------------------------------- Melosira_varians -------------------------------------------------- Blastocystis_hominis -------------------------------------------------- Perkinsus_marinus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Alexandrium_fundyense -------------------------------------------------- Babesia_bigemina -------------------------------------------------- Babesia_canis -------------------------------------------------- Babesia_sp._'Oklahoma_dog' -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_rodhaini -------------------------------------------------- Babesia_gibsoni -------------------------------------------------- Babesia_bovis -------------------------------------------------- Jakoba_libera -------------------------------------------------- Reclinomonas_americana -------------------------------------------------- Bonamia_ostreae -------------------------------------------------- Audouinella_dasyae -------------------------------------------------- Audouinella_hermannii -------------------------------------------------- Nemalion_helminthoides -------------------------------------------------- Batrachospermum_gelatinosum -------------------------------------------------- Nemalionopsis_tortuosa -------------------------------------------------- Thorea_hispida -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Nemalionopsis_shawii -------------------------------------------------- Balbiania_investiens -------------------------------------------------- Batrachospermum_macrosporum -------------------------------------------------- Ahnfeltia_plicata -------------------------------------------------- Corallina_officinalis -------------------------------------------------- Rhodogorgon_carriebowensis -------------------------------------------------- Bonnemaisonia_hamifera -------------------------------------------------- Gelidium_vagum -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Halymenia_plana -------------------------------------------------- Rhodymenia_leptophylla -------------------------------------------------- Plocamiocolax_pulvinata -------------------------------------------------- Ceramium_rubrum -------------------------------------------------- Gracilariopsis_sp. -------------------------------------------------- Bostrychia_moritziana -------------------------------------------------- Hildenbrandia_rubra -------------------------------------------------- Dixonielloa_grisea -------------------------------------------------- Naegleria_fowleri -------------------------------------------------- Naegleria_gruberi -------------------------------------------------- Hexamita_sp. -------------------------------------------------- Tritrichomonas_foetus -------------------------------------------------- Amblyospora_khaliulini -------------------------------------------------- Edhazardia_aedis -------------------------------------------------- Amblyospora_connecticus -------------------------------------------------- Intrapredatorus_barri -------------------------------------------------- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. -------------------------------------------------- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii -------------------------------------------------- Weiseria_palustris -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani -------------------------------------------------- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae -------------------------------------------------- Thelohania_solenopsae -------------------------------------------------- Visvesvaria_acridophagus -------------------------------------------------- Bacillidium_sp. -------------------------------------------------- Pseudonosema_cristatellae -------------------------------------------------- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum -------------------------------------------------- Pleistophora_mirandellae -------------------------------------------------- Trachipleistophora_hominis -------------------------------------------------- Vavraia_culicis -------------------------------------------------- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii -------------------------------------------------- F -------------------------------------------------- Dictyocoela_gammarellum -------------------------------------------------- Microsporidium_prosopium -------------------------------------------------- Antonospora_scoticae -------------------------------------------------- Paranosema_whitei -------------------------------------------------- #=GC SS_cons .................................................. Cynomorium_coccineum -------------------------------------------------- Cytinus_ruber -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Spinacia_oleracea -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Ricinus_communis -------------------------------------------------- F -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Pyramimonas_parkeae -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Pilostyles_thurberi -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Penicillium_chrysogenum -------------------------------------------------- Emericella_nidulans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Williopsis_saturnus_var._mrakii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Babesia_bovis -------------------------------------------------- Tetrahymena_pyriformis -------------------------------------------------- Suillus_sinuspaulianus -------------------------------------------------- Paramecium_tetraurelia -------------------------------------------------- Dictyostelium_discoideum -------------------------------------------------- Physarum_polycephalum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Hydnora_africana -------------------------------------------------- Codium_fragile -------------------------------------------------- Caulerpa_sertularioides -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cryptomonas_sp. -------------------------------------------------- Palmaria_palmata -------------------------------------------------- Heterosigma_akashiwo -------------------------------------------------- Skeletonema_pseudocostatum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Cyanidium_caldarium -------------------------------------------------- Emiliania_huxleyi -------------------------------------------------- Euglena_gracilis -------------------------------------------------- Anabaena_sp. -------------------------------------------------- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -------------------------------------------------- F -------------------------------------------------- Oscillatoria_agardhii -------------------------------------------------- Pleurocapsa_sp. -------------------------------------------------- Microcystis_aeruginosa -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos -------------------------------------------------- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Bacillus_anthracis -------------------------------------------------- Bacillus_cereus -------------------------------------------------- Enterococcus_faecalis -------------------------------------------------- Enterococcus_faecium -------------------------------------------------- Listeria_monocytogenes -------------------------------------------------- Bacillus_subtilis -------------------------------------------------- Bacillus_subtilis_A -------------------------------------------------- Bacillus_halodurans -------------------------------------------------- Staphylococcus_aureus -------------------------------------------------- Staphylococcus_aureus_N315 -------------------------------------------------- Lactococcus_lactis_subsp._lactis -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Lactobacillus_acidophilus -------------------------------------------------- Mycoplasma_capricolum -------------------------------------------------- Mycoplasma_mycoides -------------------------------------------------- Erysipelothrix_rhusiopathiae_(alpha-P15) -------------------------------------------------- Clostridium_innocuum -------------------------------------------------- Mycoplasma_genitalium -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_gallisepticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Mycoplasma_hyopneumoniae -------------------------------------------------- Fusobacterium_necrophorum -------------------------------------------------- Fusobacterium_nucleatum_subsp._nucleatum -------------------------------------------------- Streptobacillus_moniliformis -------------------------------------------------- Clostridium_botulinum_type_f -------------------------------------------------- Clostridium_tetani -------------------------------------------------- Clostridium_perfringens -------------------------------------------------- Clostridium_difficile -------------------------------------------------- Eubacterium_brachy -------------------------------------------------- Epulopiscium_sp. -------------------------------------------------- Heliobacterium_chlorum -------------------------------------------------- Glycine_max -------------------------------------------------- Oenothera_berteroana -------------------------------------------------- Secale_cereale -------------------------------------------------- Triticum_aestivum -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Gluconacetobacter_liquefaciens -------------------------------------------------- Bradyrhizobium_japonicum -------------------------------------------------- Rhodoblastus_acidophilus -------------------------------------------------- Azorhizobium_caulinodans -------------------------------------------------- Bartonella_quintana -------------------------------------------------- Mesorhizobium_loti -------------------------------------------------- Agrobacterium_tumefaciens -------------------------------------------------- Bartonella_bacilliformis -------------------------------------------------- Bartonella_henselae -------------------------------------------------- Brucella_melitensis -------------------------------------------------- Rhodobium_orientis -------------------------------------------------- F -------------------------------------------------- Rickettsia_bellii -------------------------------------------------- Rickettsia_felis_URRWXCal2 -------------------------------------------------- Rickettsia_prowazekii -------------------------------------------------- Rickettsia_prowazekii_(str._Madrid_E) -------------------------------------------------- Rickettsia_rickettsii -------------------------------------------------- Acinetobacter_calcoaceticus -------------------------------------------------- Psychrobacter_pacificensis -------------------------------------------------- Chromohalobacter_marismortui -------------------------------------------------- F -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_sp. -------------------------------------------------- Pseudomonas_putida -------------------------------------------------- Coxiella_burnetii -------------------------------------------------- Methylococcus_capsulatus -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Allochromatium_vinosum -------------------------------------------------- Beggiatoa_sp._1401-13 -------------------------------------------------- Aeromonas_hydrophila -------------------------------------------------- Shewanella_putrefaciens -------------------------------------------------- Citrobacter_freundii -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Klebsiella_pneumoniae -------------------------------------------------- Plesiomonas_shigelloides -------------------------------------------------- Yersinia_pestis -------------------------------------------------- F -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Escherichia_coli_O157:H7 -------------------------------------------------- Escherichia_coli_O157:H7_EDL933 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli_K12 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Salmonella_typhimurium -------------------------------------------------- Serratia_marcescens -------------------------------------------------- Edwardsiella_tarda -------------------------------------------------- Proteus_vulgaris -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- F -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae_(operons_A-F) -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Xanthomonas_albilineans -------------------------------------------------- Xanthomonas_campestris -------------------------------------------------- Xylella_fastidiosa -------------------------------------------------- Dichelobacter_nodosus -------------------------------------------------- Francisella_tularensis -------------------------------------------------- Bordetella_parapertussis -------------------------------------------------- Bordetella_pertussis -------------------------------------------------- Bordetella_bronchiseptica -------------------------------------------------- unidentified_proteobacterium -------------------------------------------------- Burkholderia_mallei -------------------------------------------------- Burkholderia_sp. -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -------------------------------------------------- Comamonas_testosteroni -------------------------------------------------- Desulfovibrio_desulfuricans -------------------------------------------------- Myxococcus_xanthus -------------------------------------------------- Deferribacter_thermophilus -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_hermsii -------------------------------------------------- Spirochaeta_aurantia -------------------------------------------------- Treponema_pallidum_(rRNA_A) -------------------------------------------------- Leptonema_illini -------------------------------------------------- Leptospira_interrogans -------------------------------------------------- Chlamydia_trachomatis_D/UW-3/CX -------------------------------------------------- Chlamydia_trachomatis_L2/434/BU -------------------------------------------------- Chlamydia_muridarum -------------------------------------------------- Chlamydophila_pneumoniae_AR39 -------------------------------------------------- Chlamydophila_pneumoniae -------------------------------------------------- Chlamydophila_pneumoniae_J138 -------------------------------------------------- F -------------------------------------------------- Chlamydophila_psittaci -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- Porphyromonas_gingivalis -------------------------------------------------- Prosthecochloris_vibrioformis -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_sputorum -------------------------------------------------- F -------------------------------------------------- Helicobacter_pylori_J99 -------------------------------------------------- Helicobacter_pylori -------------------------------------------------- Acidobacterium_capsulatum -------------------------------------------------- Holophaga_foetida -------------------------------------------------- Arthrobacter_globiformis -------------------------------------------------- Micrococcus_luteus -------------------------------------------------- Frankia_sp. -------------------------------------------------- Streptomyces_bottropensis -------------------------------------------------- Streptomyces_scabiei -------------------------------------------------- Streptomyces_neyagawaensis -------------------------------------------------- F -------------------------------------------------- Streptomyces_sp. -------------------------------------------------- Streptomyces_acidiscabies -------------------------------------------------- Streptomyces_griseus -------------------------------------------------- Streptomyces_ornatus -------------------------------------------------- Streptomyces_subrutilus -------------------------------------------------- Streptomyces_bikiniensis -------------------------------------------------- Streptomyces_galbus -------------------------------------------------- Streptomyces_hygroscopicus -------------------------------------------------- Streptomyces_lincolnensis -------------------------------------------------- Streptomyces_coelicolor -------------------------------------------------- Streptomyces_tendae -------------------------------------------------- Streptomyces_ambofaciens -------------------------------------------------- Streptomyces_eurythermus -------------------------------------------------- Streptomyces_nodosus -------------------------------------------------- Streptomyces_sampsonii -------------------------------------------------- Streptomyces_glaucescens -------------------------------------------------- Streptomyces_pseudogriseolus -------------------------------------------------- Streptomyces_caelestis -------------------------------------------------- Streptomyces_bluensis -------------------------------------------------- Streptomyces_espinosus -------------------------------------------------- Streptomyces_mashuensis -------------------------------------------------- Streptomyces_rimosus -------------------------------------------------- Streptomyces_limosus -------------------------------------------------- Streptomyces_odorifer -------------------------------------------------- Streptomyces_felleus -------------------------------------------------- Streptomyces_albidoflavus -------------------------------------------------- Streptomyces_gougerotii -------------------------------------------------- Streptomyces_rutgersensis -------------------------------------------------- Streptomyces_intermedius -------------------------------------------------- F -------------------------------------------------- Streptomyces_thermoviolaceus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus -------------------------------------------------- Streptomyces_megasporus -------------------------------------------------- Streptomyces_thermolineatus -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_avium -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides -------------------------------------------------- Rhodococcus_erythropolis -------------------------------------------------- Corynebacterium_diphtheriae -------------------------------------------------- Actinomyces_israelii -------------------------------------------------- Brachyspira_hyodysenteriae -------------------------------------------------- Geotoga_subterranea -------------------------------------------------- Petrotoga_miotherma -------------------------------------------------- Brevinema_andersonii -------------------------------------------------- Herpetosiphon_aurantiacus -------------------------------------------------- F -------------------------------------------------- Aquifex_aeolicus -------------------------------------------------- Aquifex_pyrophilus -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- Thermus_aquaticus -------------------------------------------------- Thermomicrobium_roseum -------------------------------------------------- Pirellula_marina -------------------------------------------------- Pirellula_staleyi -------------------------------------------------- Planctomycetaceae_Schlesner_670 -------------------------------------------------- Gemmata_obscuriglobus -------------------------------------------------- Isosphaera_pallida -------------------------------------------------- Pyrococcus_abyssi -------------------------------------------------- Pyrococcus_horikoshii -------------------------------------------------- Pyrococcus_furiosus -------------------------------------------------- Thermococcus_celer -------------------------------------------------- Archaeoglobus_fulgidus -------------------------------------------------- Nanoarchaeum_equitans -------------------------------------------------- Aeropyrum_pernix_(str._K1) -------------------------------------------------- Pyrodictium_occultum -------------------------------------------------- Thermoproteus_tenax -------------------------------------------------- Sulfolobus_acidocaldarius -------------------------------------------------- Sulfolobus_solfataricus -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum -------------------------------------------------- Methanococcus_vannielii -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -------------------------------------------------- Natronorubrum_bangense -------------------------------------------------- Natronobacterium_innermongoliae -------------------------------------------------- Haloferax_volcanii -------------------------------------------------- Methanospirillum_hungatei -------------------------------------------------- Picrophilus_torridus_DSM_9790 -------------------------------------------------- Thermoplasma_acidophilum -------------------------------------------------- Giardia_ardeae -------------------------------------------------- Giardia_intestinalis -------------------------------------------------- Giardia_muris -------------------------------------------------- Amblyospora_bracteata -------------------------------------------------- Glomus_sp._W3349 -------------------------------------------------- Scutellospora_cerradensis -------------------------------------------------- Glomus_intraradices -------------------------------------------------- Smittium_culisetae -------------------------------------------------- Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus -------------------------------------------------- Tilletia_caries -------------------------------------------------- Mucor_circinelloides_f._lusitanicus -------------------------------------------------- Mucor_racemosus -------------------------------------------------- Rhizopus_oryzae -------------------------------------------------- Mytilus_edulis -------------------------------------------------- Placopecten_magellanicus -------------------------------------------------- Echinococcus_granulosus -------------------------------------------------- Drosophila_melanogaster -------------------------------------------------- Crossodonthina_koreana -------------------------------------------------- Androctonus_australis -------------------------------------------------- Okanagana_utahensis -------------------------------------------------- Artemia_salina -------------------------------------------------- Mus_musculus -------------------------------------------------- Rattus_norvegicus -------------------------------------------------- Homo_sapiens -------------------------------------------------- Oryctolagus_cuniculus -------------------------------------------------- Xenopus_borealis -------------------------------------------------- Xenopus_laevis -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Balamuthia_mandrillaris -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Entamoeba_histolytica -------------------------------------------------- Ichthyophonus_hoferi -------------------------------------------------- Dermocystidium_sp. -------------------------------------------------- Sphaerothecum_destruens -------------------------------------------------- Acanthocoepsis_unguiculata -------------------------------------------------- Diaphanoeca_grandis -------------------------------------------------- Allomyces_macrogynus -------------------------------------------------- Blastocladiella_emersonii -------------------------------------------------- Candida_albicans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Coccidioides_immitis -------------------------------------------------- Leishmania_major -------------------------------------------------- Trypanosoma_cruzi -------------------------------------------------- Trypanosoma_brucei UGAAAUUAGAACCAACGCCUCCACCCGGGGGCAGUAACACUCAGACGUGU Pneumocystis_carinii -------------------------------------------------- Cryptococcus_neoformans_var._neoformans -------------------------------------------------- fungal_contaminant_of_QPX_isolate -------------------------------------------------- Ustilago_maydis -------------------------------------------------- Mnemiopsis_leidyi -------------------------------------------------- Tripedalia_cystophora -------------------------------------------------- Microciona_prolifera -------------------------------------------------- Psorospermium_haeckeli -------------------------------------------------- Euglypha_rotunda -------------------------------------------------- Paulinella_chromatophora -------------------------------------------------- Antirrhinum_majus -------------------------------------------------- Sesamum_indicum -------------------------------------------------- Digitalis_grandiflora -------------------------------------------------- Plantago_lanceolata -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Arabidopsis_thaliana -------------------------------------------------- Sinapis_alba -------------------------------------------------- Solanum_tuberosum -------------------------------------------------- Fragaria_x_ananassa -------------------------------------------------- Glycine_max -------------------------------------------------- Oryza_sativa -------------------------------------------------- Zea_mays -------------------------------------------------- F -------------------------------------------------- Genicularia_spirotaenia -------------------------------------------------- F -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- FChlorella'_luteoviridis -------------------------------------------------- Oxytricha_longa -------------------------------------------------- Paraurostyla_weissei -------------------------------------------------- Cyrtohymena_citrina -------------------------------------------------- Gastrostyla_steinii -------------------------------------------------- Pleurotricha_lanceolota -------------------------------------------------- Onychodromus_quadricornutus -------------------------------------------------- Stylonychia_lemnae -------------------------------------------------- Stylonychia_mytilus -------------------------------------------------- Engelmanniella_mobilis -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Uroleptus_gallina -------------------------------------------------- Uroleptus_pisces -------------------------------------------------- Paruroleptus_lepisma -------------------------------------------------- Urostyla_grandis -------------------------------------------------- Balantidium_coli -------------------------------------------------- Euplotes_aediculatus -------------------------------------------------- Tetrahymena_thermophila -------------------------------------------------- Bangia_sp._(Northwest_Territories/NWT) -------------------------------------------------- Bangia_sp._(Virgin_Islands/VIS7) -------------------------------------------------- Erythrotrichia_carnea -------------------------------------------------- Rhodochaete_parvula -------------------------------------------------- Compsopogon_coeruleus -------------------------------------------------- Porphyridium_aerugineum -------------------------------------------------- Rhodella_maculata -------------------------------------------------- Aulacoseira_ambigua -------------------------------------------------- Aulacoseira_baicalensis -------------------------------------------------- Stephanopyxis_nipponica -------------------------------------------------- Coscinodiscus_radiatus -------------------------------------------------- Corethron_criophilum -------------------------------------------------- Amphora_cf._capitellata -------------------------------------------------- Sellaphora_pupula_f._capitata -------------------------------------------------- Thalassiosira_antarctica -------------------------------------------------- Encyonema_triangulatum -------------------------------------------------- Achnanthes_bongranii -------------------------------------------------- F -------------------------------------------------- Diatoma_tenue -------------------------------------------------- Grammatophora_marina -------------------------------------------------- Thalassionema_sp._p474 -------------------------------------------------- Rhaphoneis_belgicae -------------------------------------------------- Undatella_sp._p446 -------------------------------------------------- Cymatosira_belgica -------------------------------------------------- Odontella_sinensis -------------------------------------------------- Ditylum_brightwellii -------------------------------------------------- Lithodesmium_undulatum -------------------------------------------------- Thalassiosira_eccentrica -------------------------------------------------- Thalassiosira_pseudonana -------------------------------------------------- Skeletonema_costatum -------------------------------------------------- Pleurosira_cf._laevis -------------------------------------------------- Lauderia_borealis -------------------------------------------------- F -------------------------------------------------- Bolidomonas_mediterranea -------------------------------------------------- Bolidomonas_pacifica -------------------------------------------------- Labyrinthuloides_minuta -------------------------------------------------- Leptocylindrus_danicus -------------------------------------------------- Chaetoceros_sp. -------------------------------------------------- Aphanomyces_invadans -------------------------------------------------- Lagenidium_giganteum -------------------------------------------------- Melosira_varians -------------------------------------------------- Blastocystis_hominis -------------------------------------------------- Perkinsus_marinus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Alexandrium_fundyense -------------------------------------------------- Babesia_bigemina -------------------------------------------------- Babesia_canis -------------------------------------------------- Babesia_sp._'Oklahoma_dog' -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_rodhaini -------------------------------------------------- Babesia_gibsoni -------------------------------------------------- Babesia_bovis -------------------------------------------------- Jakoba_libera -------------------------------------------------- Reclinomonas_americana -------------------------------------------------- Bonamia_ostreae -------------------------------------------------- Audouinella_dasyae -------------------------------------------------- Audouinella_hermannii -------------------------------------------------- Nemalion_helminthoides -------------------------------------------------- Batrachospermum_gelatinosum -------------------------------------------------- Nemalionopsis_tortuosa -------------------------------------------------- Thorea_hispida -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Nemalionopsis_shawii -------------------------------------------------- Balbiania_investiens -------------------------------------------------- Batrachospermum_macrosporum -------------------------------------------------- Ahnfeltia_plicata -------------------------------------------------- Corallina_officinalis -------------------------------------------------- Rhodogorgon_carriebowensis -------------------------------------------------- Bonnemaisonia_hamifera -------------------------------------------------- Gelidium_vagum -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Halymenia_plana -------------------------------------------------- Rhodymenia_leptophylla -------------------------------------------------- Plocamiocolax_pulvinata -------------------------------------------------- Ceramium_rubrum -------------------------------------------------- Gracilariopsis_sp. -------------------------------------------------- Bostrychia_moritziana -------------------------------------------------- Hildenbrandia_rubra -------------------------------------------------- Dixonielloa_grisea -------------------------------------------------- Naegleria_fowleri -------------------------------------------------- Naegleria_gruberi -------------------------------------------------- Hexamita_sp. -------------------------------------------------- Tritrichomonas_foetus -------------------------------------------------- Amblyospora_khaliulini -------------------------------------------------- Edhazardia_aedis -------------------------------------------------- Amblyospora_connecticus -------------------------------------------------- Intrapredatorus_barri -------------------------------------------------- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. -------------------------------------------------- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii -------------------------------------------------- Weiseria_palustris -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani -------------------------------------------------- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae -------------------------------------------------- Thelohania_solenopsae -------------------------------------------------- Visvesvaria_acridophagus -------------------------------------------------- Bacillidium_sp. -------------------------------------------------- Pseudonosema_cristatellae -------------------------------------------------- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum -------------------------------------------------- Pleistophora_mirandellae -------------------------------------------------- Trachipleistophora_hominis -------------------------------------------------- Vavraia_culicis -------------------------------------------------- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii -------------------------------------------------- F -------------------------------------------------- Dictyocoela_gammarellum -------------------------------------------------- Microsporidium_prosopium -------------------------------------------------- Antonospora_scoticae -------------------------------------------------- Paranosema_whitei -------------------------------------------------- #=GC SS_cons .................................................. Cynomorium_coccineum -------------------------------------------------- Cytinus_ruber -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Spinacia_oleracea -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Ricinus_communis -------------------------------------------------- F -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Pyramimonas_parkeae -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Pilostyles_thurberi -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Penicillium_chrysogenum -------------------------------------------------- Emericella_nidulans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Williopsis_saturnus_var._mrakii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Babesia_bovis -------------------------------------------------- Tetrahymena_pyriformis -------------------------------------------------- Suillus_sinuspaulianus -------------------------------------------------- Paramecium_tetraurelia -------------------------------------------------- Dictyostelium_discoideum -------------------------------------------------- Physarum_polycephalum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Hydnora_africana -------------------------------------------------- Codium_fragile -------------------------------------------------- Caulerpa_sertularioides -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cryptomonas_sp. -------------------------------------------------- Palmaria_palmata -------------------------------------------------- Heterosigma_akashiwo -------------------------------------------------- Skeletonema_pseudocostatum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Cyanidium_caldarium -------------------------------------------------- Emiliania_huxleyi -------------------------------------------------- Euglena_gracilis -------------------------------------------------- Anabaena_sp. -------------------------------------------------- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -------------------------------------------------- F -------------------------------------------------- Oscillatoria_agardhii -------------------------------------------------- Pleurocapsa_sp. -------------------------------------------------- Microcystis_aeruginosa -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos -------------------------------------------------- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Bacillus_anthracis -------------------------------------------------- Bacillus_cereus -------------------------------------------------- Enterococcus_faecalis -------------------------------------------------- Enterococcus_faecium -------------------------------------------------- Listeria_monocytogenes -------------------------------------------------- Bacillus_subtilis -------------------------------------------------- Bacillus_subtilis_A -------------------------------------------------- Bacillus_halodurans -------------------------------------------------- Staphylococcus_aureus -------------------------------------------------- Staphylococcus_aureus_N315 -------------------------------------------------- Lactococcus_lactis_subsp._lactis -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Lactobacillus_acidophilus -------------------------------------------------- Mycoplasma_capricolum -------------------------------------------------- Mycoplasma_mycoides -------------------------------------------------- Erysipelothrix_rhusiopathiae_(alpha-P15) -------------------------------------------------- Clostridium_innocuum -------------------------------------------------- Mycoplasma_genitalium -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_gallisepticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Mycoplasma_hyopneumoniae -------------------------------------------------- Fusobacterium_necrophorum -------------------------------------------------- Fusobacterium_nucleatum_subsp._nucleatum -------------------------------------------------- Streptobacillus_moniliformis -------------------------------------------------- Clostridium_botulinum_type_f -------------------------------------------------- Clostridium_tetani -------------------------------------------------- Clostridium_perfringens -------------------------------------------------- Clostridium_difficile -------------------------------------------------- Eubacterium_brachy -------------------------------------------------- Epulopiscium_sp. -------------------------------------------------- Heliobacterium_chlorum -------------------------------------------------- Glycine_max -------------------------------------------------- Oenothera_berteroana -------------------------------------------------- Secale_cereale -------------------------------------------------- Triticum_aestivum -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Gluconacetobacter_liquefaciens -------------------------------------------------- Bradyrhizobium_japonicum -------------------------------------------------- Rhodoblastus_acidophilus -------------------------------------------------- Azorhizobium_caulinodans -------------------------------------------------- Bartonella_quintana -------------------------------------------------- Mesorhizobium_loti -------------------------------------------------- Agrobacterium_tumefaciens -------------------------------------------------- Bartonella_bacilliformis -------------------------------------------------- Bartonella_henselae -------------------------------------------------- Brucella_melitensis -------------------------------------------------- Rhodobium_orientis -------------------------------------------------- F -------------------------------------------------- Rickettsia_bellii -------------------------------------------------- Rickettsia_felis_URRWXCal2 -------------------------------------------------- Rickettsia_prowazekii -------------------------------------------------- Rickettsia_prowazekii_(str._Madrid_E) -------------------------------------------------- Rickettsia_rickettsii -------------------------------------------------- Acinetobacter_calcoaceticus -------------------------------------------------- Psychrobacter_pacificensis -------------------------------------------------- Chromohalobacter_marismortui -------------------------------------------------- F -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_sp. -------------------------------------------------- Pseudomonas_putida -------------------------------------------------- Coxiella_burnetii -------------------------------------------------- Methylococcus_capsulatus -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Allochromatium_vinosum -------------------------------------------------- Beggiatoa_sp._1401-13 -------------------------------------------------- Aeromonas_hydrophila -------------------------------------------------- Shewanella_putrefaciens -------------------------------------------------- Citrobacter_freundii -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Klebsiella_pneumoniae -------------------------------------------------- Plesiomonas_shigelloides -------------------------------------------------- Yersinia_pestis -------------------------------------------------- F -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Escherichia_coli_O157:H7 -------------------------------------------------- Escherichia_coli_O157:H7_EDL933 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli_K12 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Salmonella_typhimurium -------------------------------------------------- Serratia_marcescens -------------------------------------------------- Edwardsiella_tarda -------------------------------------------------- Proteus_vulgaris -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- F -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae_(operons_A-F) -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Xanthomonas_albilineans -------------------------------------------------- Xanthomonas_campestris -------------------------------------------------- Xylella_fastidiosa -------------------------------------------------- Dichelobacter_nodosus -------------------------------------------------- Francisella_tularensis -------------------------------------------------- Bordetella_parapertussis -------------------------------------------------- Bordetella_pertussis -------------------------------------------------- Bordetella_bronchiseptica -------------------------------------------------- unidentified_proteobacterium -------------------------------------------------- Burkholderia_mallei -------------------------------------------------- Burkholderia_sp. -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -------------------------------------------------- Comamonas_testosteroni -------------------------------------------------- Desulfovibrio_desulfuricans -------------------------------------------------- Myxococcus_xanthus -------------------------------------------------- Deferribacter_thermophilus -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_hermsii -------------------------------------------------- Spirochaeta_aurantia -------------------------------------------------- Treponema_pallidum_(rRNA_A) -------------------------------------------------- Leptonema_illini -------------------------------------------------- Leptospira_interrogans -------------------------------------------------- Chlamydia_trachomatis_D/UW-3/CX -------------------------------------------------- Chlamydia_trachomatis_L2/434/BU -------------------------------------------------- Chlamydia_muridarum -------------------------------------------------- Chlamydophila_pneumoniae_AR39 -------------------------------------------------- Chlamydophila_pneumoniae -------------------------------------------------- Chlamydophila_pneumoniae_J138 -------------------------------------------------- F -------------------------------------------------- Chlamydophila_psittaci -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- Porphyromonas_gingivalis -------------------------------------------------- Prosthecochloris_vibrioformis -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_sputorum -------------------------------------------------- F -------------------------------------------------- Helicobacter_pylori_J99 -------------------------------------------------- Helicobacter_pylori -------------------------------------------------- Acidobacterium_capsulatum -------------------------------------------------- Holophaga_foetida -------------------------------------------------- Arthrobacter_globiformis -------------------------------------------------- Micrococcus_luteus -------------------------------------------------- Frankia_sp. -------------------------------------------------- Streptomyces_bottropensis -------------------------------------------------- Streptomyces_scabiei -------------------------------------------------- Streptomyces_neyagawaensis -------------------------------------------------- F -------------------------------------------------- Streptomyces_sp. -------------------------------------------------- Streptomyces_acidiscabies -------------------------------------------------- Streptomyces_griseus -------------------------------------------------- Streptomyces_ornatus -------------------------------------------------- Streptomyces_subrutilus -------------------------------------------------- Streptomyces_bikiniensis -------------------------------------------------- Streptomyces_galbus -------------------------------------------------- Streptomyces_hygroscopicus -------------------------------------------------- Streptomyces_lincolnensis -------------------------------------------------- Streptomyces_coelicolor -------------------------------------------------- Streptomyces_tendae -------------------------------------------------- Streptomyces_ambofaciens -------------------------------------------------- Streptomyces_eurythermus -------------------------------------------------- Streptomyces_nodosus -------------------------------------------------- Streptomyces_sampsonii -------------------------------------------------- Streptomyces_glaucescens -------------------------------------------------- Streptomyces_pseudogriseolus -------------------------------------------------- Streptomyces_caelestis -------------------------------------------------- Streptomyces_bluensis -------------------------------------------------- Streptomyces_espinosus -------------------------------------------------- Streptomyces_mashuensis -------------------------------------------------- Streptomyces_rimosus -------------------------------------------------- Streptomyces_limosus -------------------------------------------------- Streptomyces_odorifer -------------------------------------------------- Streptomyces_felleus -------------------------------------------------- Streptomyces_albidoflavus -------------------------------------------------- Streptomyces_gougerotii -------------------------------------------------- Streptomyces_rutgersensis -------------------------------------------------- Streptomyces_intermedius -------------------------------------------------- F -------------------------------------------------- Streptomyces_thermoviolaceus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus -------------------------------------------------- Streptomyces_megasporus -------------------------------------------------- Streptomyces_thermolineatus -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_avium -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides -------------------------------------------------- Rhodococcus_erythropolis -------------------------------------------------- Corynebacterium_diphtheriae -------------------------------------------------- Actinomyces_israelii -------------------------------------------------- Brachyspira_hyodysenteriae -------------------------------------------------- Geotoga_subterranea -------------------------------------------------- Petrotoga_miotherma -------------------------------------------------- Brevinema_andersonii -------------------------------------------------- Herpetosiphon_aurantiacus -------------------------------------------------- F -------------------------------------------------- Aquifex_aeolicus -------------------------------------------------- Aquifex_pyrophilus -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- Thermus_aquaticus -------------------------------------------------- Thermomicrobium_roseum -------------------------------------------------- Pirellula_marina -------------------------------------------------- Pirellula_staleyi -------------------------------------------------- Planctomycetaceae_Schlesner_670 -------------------------------------------------- Gemmata_obscuriglobus -------------------------------------------------- Isosphaera_pallida -------------------------------------------------- Pyrococcus_abyssi -------------------------------------------------- Pyrococcus_horikoshii -------------------------------------------------- Pyrococcus_furiosus -------------------------------------------------- Thermococcus_celer -------------------------------------------------- Archaeoglobus_fulgidus -------------------------------------------------- Nanoarchaeum_equitans -------------------------------------------------- Aeropyrum_pernix_(str._K1) -------------------------------------------------- Pyrodictium_occultum -------------------------------------------------- Thermoproteus_tenax -------------------------------------------------- Sulfolobus_acidocaldarius -------------------------------------------------- Sulfolobus_solfataricus -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum -------------------------------------------------- Methanococcus_vannielii -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -------------------------------------------------- Natronorubrum_bangense -------------------------------------------------- Natronobacterium_innermongoliae -------------------------------------------------- Haloferax_volcanii -------------------------------------------------- Methanospirillum_hungatei -------------------------------------------------- Picrophilus_torridus_DSM_9790 -------------------------------------------------- Thermoplasma_acidophilum -------------------------------------------------- Giardia_ardeae -------------------------------------------------- Giardia_intestinalis -------------------------------------------------- Giardia_muris -------------------------------------------------- Amblyospora_bracteata -------------------------------------------------- Glomus_sp._W3349 -------------------------------------------------- Scutellospora_cerradensis -------------------------------------------------- Glomus_intraradices -------------------------------------------------- Smittium_culisetae -------------------------------------------------- Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus -------------------------------------------------- Tilletia_caries -------------------------------------------------- Mucor_circinelloides_f._lusitanicus -------------------------------------------------- Mucor_racemosus -------------------------------------------------- Rhizopus_oryzae -------------------------------------------------- Mytilus_edulis -------------------------------------------------- Placopecten_magellanicus -------------------------------------------------- Echinococcus_granulosus -------------------------------------------------- Drosophila_melanogaster -------------------------------------------------- Crossodonthina_koreana -------------------------------------------------- Androctonus_australis -------------------------------------------------- Okanagana_utahensis -------------------------------------------------- Artemia_salina -------------------------------------------------- Mus_musculus -------------------------------------------------- Rattus_norvegicus -------------------------------------------------- Homo_sapiens -------------------------------------------------- Oryctolagus_cuniculus -------------------------------------------------- Xenopus_borealis -------------------------------------------------- Xenopus_laevis -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Balamuthia_mandrillaris -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Entamoeba_histolytica -------------------------------------------------- Ichthyophonus_hoferi -------------------------------------------------- Dermocystidium_sp. -------------------------------------------------- Sphaerothecum_destruens -------------------------------------------------- Acanthocoepsis_unguiculata -------------------------------------------------- Diaphanoeca_grandis -------------------------------------------------- Allomyces_macrogynus -------------------------------------------------- Blastocladiella_emersonii -------------------------------------------------- Candida_albicans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Coccidioides_immitis -------------------------------------------------- Leishmania_major -------------------------------------------------- Trypanosoma_cruzi -------------------------------------------------- Trypanosoma_brucei UGACUCAAUUCAUUCCGUGCGAAAGCCGAGCCUUUUUGCUCGGCGUCUAC Pneumocystis_carinii -------------------------------------------------- Cryptococcus_neoformans_var._neoformans -------------------------------------------------- fungal_contaminant_of_QPX_isolate -------------------------------------------------- Ustilago_maydis -------------------------------------------------- Mnemiopsis_leidyi -------------------------------------------------- Tripedalia_cystophora -------------------------------------------------- Microciona_prolifera -------------------------------------------------- Psorospermium_haeckeli -------------------------------------------------- Euglypha_rotunda -------------------------------------------------- Paulinella_chromatophora -------------------------------------------------- Antirrhinum_majus -------------------------------------------------- Sesamum_indicum -------------------------------------------------- Digitalis_grandiflora -------------------------------------------------- Plantago_lanceolata -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Arabidopsis_thaliana -------------------------------------------------- Sinapis_alba -------------------------------------------------- Solanum_tuberosum -------------------------------------------------- Fragaria_x_ananassa -------------------------------------------------- Glycine_max -------------------------------------------------- Oryza_sativa -------------------------------------------------- Zea_mays -------------------------------------------------- F -------------------------------------------------- Genicularia_spirotaenia -------------------------------------------------- F -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- FChlorella'_luteoviridis -------------------------------------------------- Oxytricha_longa -------------------------------------------------- Paraurostyla_weissei -------------------------------------------------- Cyrtohymena_citrina -------------------------------------------------- Gastrostyla_steinii -------------------------------------------------- Pleurotricha_lanceolota -------------------------------------------------- Onychodromus_quadricornutus -------------------------------------------------- Stylonychia_lemnae -------------------------------------------------- Stylonychia_mytilus -------------------------------------------------- Engelmanniella_mobilis -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Uroleptus_gallina -------------------------------------------------- Uroleptus_pisces -------------------------------------------------- Paruroleptus_lepisma -------------------------------------------------- Urostyla_grandis -------------------------------------------------- Balantidium_coli -------------------------------------------------- Euplotes_aediculatus -------------------------------------------------- Tetrahymena_thermophila -------------------------------------------------- Bangia_sp._(Northwest_Territories/NWT) -------------------------------------------------- Bangia_sp._(Virgin_Islands/VIS7) -------------------------------------------------- Erythrotrichia_carnea -------------------------------------------------- Rhodochaete_parvula -------------------------------------------------- Compsopogon_coeruleus -------------------------------------------------- Porphyridium_aerugineum -------------------------------------------------- Rhodella_maculata -------------------------------------------------- Aulacoseira_ambigua -------------------------------------------------- Aulacoseira_baicalensis -------------------------------------------------- Stephanopyxis_nipponica -------------------------------------------------- Coscinodiscus_radiatus -------------------------------------------------- Corethron_criophilum -------------------------------------------------- Amphora_cf._capitellata -------------------------------------------------- Sellaphora_pupula_f._capitata -------------------------------------------------- Thalassiosira_antarctica -------------------------------------------------- Encyonema_triangulatum -------------------------------------------------- Achnanthes_bongranii -------------------------------------------------- F -------------------------------------------------- Diatoma_tenue -------------------------------------------------- Grammatophora_marina -------------------------------------------------- Thalassionema_sp._p474 -------------------------------------------------- Rhaphoneis_belgicae -------------------------------------------------- Undatella_sp._p446 -------------------------------------------------- Cymatosira_belgica -------------------------------------------------- Odontella_sinensis -------------------------------------------------- Ditylum_brightwellii -------------------------------------------------- Lithodesmium_undulatum -------------------------------------------------- Thalassiosira_eccentrica -------------------------------------------------- Thalassiosira_pseudonana -------------------------------------------------- Skeletonema_costatum -------------------------------------------------- Pleurosira_cf._laevis -------------------------------------------------- Lauderia_borealis -------------------------------------------------- F -------------------------------------------------- Bolidomonas_mediterranea -------------------------------------------------- Bolidomonas_pacifica -------------------------------------------------- Labyrinthuloides_minuta -------------------------------------------------- Leptocylindrus_danicus -------------------------------------------------- Chaetoceros_sp. -------------------------------------------------- Aphanomyces_invadans -------------------------------------------------- Lagenidium_giganteum -------------------------------------------------- Melosira_varians -------------------------------------------------- Blastocystis_hominis -------------------------------------------------- Perkinsus_marinus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Alexandrium_fundyense -------------------------------------------------- Babesia_bigemina -------------------------------------------------- Babesia_canis -------------------------------------------------- Babesia_sp._'Oklahoma_dog' -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_rodhaini -------------------------------------------------- Babesia_gibsoni -------------------------------------------------- Babesia_bovis -------------------------------------------------- Jakoba_libera -------------------------------------------------- Reclinomonas_americana -------------------------------------------------- Bonamia_ostreae -------------------------------------------------- Audouinella_dasyae -------------------------------------------------- Audouinella_hermannii -------------------------------------------------- Nemalion_helminthoides -------------------------------------------------- Batrachospermum_gelatinosum -------------------------------------------------- Nemalionopsis_tortuosa -------------------------------------------------- Thorea_hispida -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Nemalionopsis_shawii -------------------------------------------------- Balbiania_investiens -------------------------------------------------- Batrachospermum_macrosporum -------------------------------------------------- Ahnfeltia_plicata -------------------------------------------------- Corallina_officinalis -------------------------------------------------- Rhodogorgon_carriebowensis -------------------------------------------------- Bonnemaisonia_hamifera -------------------------------------------------- Gelidium_vagum -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Halymenia_plana -------------------------------------------------- Rhodymenia_leptophylla -------------------------------------------------- Plocamiocolax_pulvinata -------------------------------------------------- Ceramium_rubrum -------------------------------------------------- Gracilariopsis_sp. -------------------------------------------------- Bostrychia_moritziana -------------------------------------------------- Hildenbrandia_rubra -------------------------------------------------- Dixonielloa_grisea -------------------------------------------------- Naegleria_fowleri -------------------------------------------------- Naegleria_gruberi -------------------------------------------------- Hexamita_sp. -------------------------------------------------- Tritrichomonas_foetus -------------------------------------------------- Amblyospora_khaliulini -------------------------------------------------- Edhazardia_aedis -------------------------------------------------- Amblyospora_connecticus -------------------------------------------------- Intrapredatorus_barri -------------------------------------------------- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. -------------------------------------------------- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii -------------------------------------------------- Weiseria_palustris -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani -------------------------------------------------- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae -------------------------------------------------- Thelohania_solenopsae -------------------------------------------------- Visvesvaria_acridophagus -------------------------------------------------- Bacillidium_sp. -------------------------------------------------- Pseudonosema_cristatellae -------------------------------------------------- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum -------------------------------------------------- Pleistophora_mirandellae -------------------------------------------------- Trachipleistophora_hominis -------------------------------------------------- Vavraia_culicis -------------------------------------------------- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii -------------------------------------------------- F -------------------------------------------------- Dictyocoela_gammarellum -------------------------------------------------- Microsporidium_prosopium -------------------------------------------------- Antonospora_scoticae -------------------------------------------------- Paranosema_whitei -------------------------------------------------- #=GC SS_cons .................................................. Cynomorium_coccineum -------------------------------------------------- Cytinus_ruber -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Spinacia_oleracea -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Ricinus_communis -------------------------------------------------- F -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Pyramimonas_parkeae -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Pilostyles_thurberi -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Penicillium_chrysogenum -------------------------------------------------- Emericella_nidulans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Williopsis_saturnus_var._mrakii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Babesia_bovis -------------------------------------------------- Tetrahymena_pyriformis -------------------------------------------------- Suillus_sinuspaulianus -------------------------------------------------- Paramecium_tetraurelia -------------------------------------------------- Dictyostelium_discoideum -------------------------------------------------- Physarum_polycephalum -----GUUUUAAUAUAAUAAUGAGUUUGAUCCUGGCUCCGAGAGAAUGCU Pylaiella_littoralis -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Hydnora_africana -------------------------------------------------- Codium_fragile -------------------------------------------------- Caulerpa_sertularioides -------------------------------------------------- F -------------------------------------------------- F -----ACUUCGAAAAGAGUUGAUCCUGGCUCAAGGU-------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cryptomonas_sp. -------------------------------------------------- Palmaria_palmata -------------------------------------------------- Heterosigma_akashiwo -------------------------------------------------- Skeletonema_pseudocostatum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Cyanidium_caldarium -------------------------------------------------- Emiliania_huxleyi -------------------------------------------------- Euglena_gracilis -------------------------------------------------- Anabaena_sp. -------------------------------------------------- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -------------------------------------------------- F -------------------------------------------------- Oscillatoria_agardhii -------------------------------------------------- Pleurocapsa_sp. -------------------------------------------------- Microcystis_aeruginosa -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos -------------------------------------------------- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Bacillus_anthracis -------------------------------------------------- Bacillus_cereus -------------------------------------------------- Enterococcus_faecalis -------------------------------------------------- Enterococcus_faecium -------------------------------------------------- Listeria_monocytogenes -------------------------------------------------- Bacillus_subtilis -------------------------------------------------- Bacillus_subtilis_A -------------------------------------------------- Bacillus_halodurans -------------------------------------------------- Staphylococcus_aureus -------------------------------------------------- Staphylococcus_aureus_N315 -------------------------------------------------- Lactococcus_lactis_subsp._lactis -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Lactobacillus_acidophilus -------------------------------------------------- Mycoplasma_capricolum -------------------------------------------------- Mycoplasma_mycoides -------------------------------------------------- Erysipelothrix_rhusiopathiae_(alpha-P15) -------------------------------------------------- Clostridium_innocuum -------------------------------------------------- Mycoplasma_genitalium -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_gallisepticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Mycoplasma_hyopneumoniae -------------------------------------------------- Fusobacterium_necrophorum -------------------------------------------------- Fusobacterium_nucleatum_subsp._nucleatum -------------------------------------------------- Streptobacillus_moniliformis -------------------------------------------------- Clostridium_botulinum_type_f -------------------------------------------------- Clostridium_tetani -------------------------------------------------- Clostridium_perfringens -------------------------------------------------- Clostridium_difficile -------------------------------------------------- Eubacterium_brachy -------------------------------------------------- Epulopiscium_sp. -------------------------------------------------- Heliobacterium_chlorum -------------------------------------------------- Glycine_max -----A-------------------------------------------- Oenothera_berteroana -----A-------------------------------------------- Secale_cereale -----A-------------------------------------------- Triticum_aestivum -----A-------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -----AU------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Gluconacetobacter_liquefaciens -------------------------------------------------- Bradyrhizobium_japonicum -------------------------------------------------- Rhodoblastus_acidophilus -------------------------------------------------- Azorhizobium_caulinodans -------------------------------------------------- Bartonella_quintana -------------------------------------------------- Mesorhizobium_loti -------------------------------------------------- Agrobacterium_tumefaciens -------------------------------------------------- Bartonella_bacilliformis -------------------------------------------------- Bartonella_henselae -------------------------------------------------- Brucella_melitensis -------------------------------------------------- Rhodobium_orientis -------------------------------------------------- F -------------------------------------------------- Rickettsia_bellii -------------------------------------------------- Rickettsia_felis_URRWXCal2 -----GA------------------------------------------- Rickettsia_prowazekii -------------------------------------------------- Rickettsia_prowazekii_(str._Madrid_E) -------------------------------------------------- Rickettsia_rickettsii -------------------------------------------------- Acinetobacter_calcoaceticus -------------------------------------------------- Psychrobacter_pacificensis -------------------------------------------------- Chromohalobacter_marismortui -------------------------------------------------- F -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_sp. -------------------------------------------------- Pseudomonas_putida -------------------------------------------------- Coxiella_burnetii -------------------------------------------------- Methylococcus_capsulatus -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Allochromatium_vinosum -------------------------------------------------- Beggiatoa_sp._1401-13 -------------------------------------------------- Aeromonas_hydrophila -------------------------------------------------- Shewanella_putrefaciens -------------------------------------------------- Citrobacter_freundii -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Klebsiella_pneumoniae -------------------------------------------------- Plesiomonas_shigelloides -------------------------------------------------- Yersinia_pestis -------------------------------------------------- F -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Escherichia_coli_O157:H7 -------------------------------------------------- Escherichia_coli_O157:H7_EDL933 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli_K12 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Salmonella_typhimurium -------------------------------------------------- Serratia_marcescens -------------------------------------------------- Edwardsiella_tarda -------------------------------------------------- Proteus_vulgaris -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- F -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae_(operons_A-F) -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Xanthomonas_albilineans -------------------------------------------------- Xanthomonas_campestris -------------------------------------------------- Xylella_fastidiosa -------------------------------------------------- Dichelobacter_nodosus -------------------------------------------------- Francisella_tularensis -------------------------------------------------- Bordetella_parapertussis -------------------------------------------------- Bordetella_pertussis -------------------------------------------------- Bordetella_bronchiseptica -------------------------------------------------- unidentified_proteobacterium -------------------------------------------------- Burkholderia_mallei -------------------------------------------------- Burkholderia_sp. -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -------------------------------------------------- Comamonas_testosteroni -------------------------------------------------- Desulfovibrio_desulfuricans -------------------------------------------------- Myxococcus_xanthus -------------------------------------------------- Deferribacter_thermophilus -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_hermsii -------------------------------------------------- Spirochaeta_aurantia -----CCUUGGAGCAAUCCAA----------------------------- Treponema_pallidum_(rRNA_A) -------------------------------------------------- Leptonema_illini -----UAAUCUAUCGCAAGA------------------------------ Leptospira_interrogans -------------------------------------------------- Chlamydia_trachomatis_D/UW-3/CX -------------------------------------------------- Chlamydia_trachomatis_L2/434/BU -------------------------------------------------- Chlamydia_muridarum -------------------------------------------------- Chlamydophila_pneumoniae_AR39 -------------------------------------------------- Chlamydophila_pneumoniae -------------------------------------------------- Chlamydophila_pneumoniae_J138 -------------------------------------------------- F -------------------------------------------------- Chlamydophila_psittaci -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- Porphyromonas_gingivalis -------------------------------------------------- Prosthecochloris_vibrioformis -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_sputorum -----UGCUCUGACCGUGUUGAGAAUAUCGGGAGUGAACUCUGGCGGCGU F -------------------------------------------------- Helicobacter_pylori_J99 -------------------------------------------------- Helicobacter_pylori -------------------------------------------------- Acidobacterium_capsulatum -------------------------------------------------- Holophaga_foetida -------------------------------------------------- Arthrobacter_globiformis -------------------------------------------------- Micrococcus_luteus -------------------------------------------------- Frankia_sp. -------------------------------------------------- Streptomyces_bottropensis -------------------------------------------------- Streptomyces_scabiei -------------------------------------------------- Streptomyces_neyagawaensis -------------------------------------------------- F -------------------------------------------------- Streptomyces_sp. -------------------------------------------------- Streptomyces_acidiscabies -------------------------------------------------- Streptomyces_griseus -------------------------------------------------- Streptomyces_ornatus -------------------------------------------------- Streptomyces_subrutilus -------------------------------------------------- Streptomyces_bikiniensis -------------------------------------------------- Streptomyces_galbus -------------------------------------------------- Streptomyces_hygroscopicus -------------------------------------------------- Streptomyces_lincolnensis -------------------------------------------------- Streptomyces_coelicolor -------------------------------------------------- Streptomyces_tendae -------------------------------------------------- Streptomyces_ambofaciens -------------------------------------------------- Streptomyces_eurythermus -------------------------------------------------- Streptomyces_nodosus -------------------------------------------------- Streptomyces_sampsonii -------------------------------------------------- Streptomyces_glaucescens -------------------------------------------------- Streptomyces_pseudogriseolus -------------------------------------------------- Streptomyces_caelestis -------------------------------------------------- Streptomyces_bluensis -------------------------------------------------- Streptomyces_espinosus -------------------------------------------------- Streptomyces_mashuensis -------------------------------------------------- Streptomyces_rimosus -------------------------------------------------- Streptomyces_limosus -------------------------------------------------- Streptomyces_odorifer -------------------------------------------------- Streptomyces_felleus -------------------------------------------------- Streptomyces_albidoflavus -------------------------------------------------- Streptomyces_gougerotii -------------------------------------------------- Streptomyces_rutgersensis -------------------------------------------------- Streptomyces_intermedius -------------------------------------------------- F -------------------------------------------------- Streptomyces_thermoviolaceus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus -------------------------------------------------- Streptomyces_megasporus -------------------------------------------------- Streptomyces_thermolineatus -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_avium -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides -------------------------------------------------- Rhodococcus_erythropolis -------------------------------------------------- Corynebacterium_diphtheriae -------------------------------------------------- Actinomyces_israelii -------------------------------------------------- Brachyspira_hyodysenteriae -------------------------------------------------- Geotoga_subterranea -------------------------------------------------- Petrotoga_miotherma -------------------------------------------------- Brevinema_andersonii -------------------------------------------------- Herpetosiphon_aurantiacus -------------------------------------------------- F -------------------------------------------------- Aquifex_aeolicus -------------------------------------------------- Aquifex_pyrophilus -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- Thermus_aquaticus -------------------------------------------------- Thermomicrobium_roseum -------------------------------------------------- Pirellula_marina -------------------------------------------------- Pirellula_staleyi -------------------------------------------------- Planctomycetaceae_Schlesner_670 -------------------------------------------------- Gemmata_obscuriglobus -------------------------------------------------- Isosphaera_pallida -------------------------------------------------- Pyrococcus_abyssi -------------------------------------------------- Pyrococcus_horikoshii -------------------------------------------------- Pyrococcus_furiosus -------------------------------------------------- Thermococcus_celer -------------------------------------------------- Archaeoglobus_fulgidus -------------------------------------------------- Nanoarchaeum_equitans -------------------------------------------------- Aeropyrum_pernix_(str._K1) -------------------------------------------------- Pyrodictium_occultum -------------------------------------------------- Thermoproteus_tenax -------------------------------------------------- Sulfolobus_acidocaldarius -------------------------------------------------- Sulfolobus_solfataricus -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum -------------------------------------------------- Methanococcus_vannielii -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -------------------------------------------------- Natronorubrum_bangense -------------------------------------------------- Natronobacterium_innermongoliae -------------------------------------------------- Haloferax_volcanii -------------------------------------------------- Methanospirillum_hungatei -------------------------------------------------- Picrophilus_torridus_DSM_9790 -------------------------------------------------- Thermoplasma_acidophilum -------------------------------------------------- Giardia_ardeae -------------------------------------------------- Giardia_intestinalis -------------------------------------------------- Giardia_muris -------------------------------------------------- Amblyospora_bracteata -------------------------------------------------- Glomus_sp._W3349 -----UGCUCUGACCGUGUUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUU Scutellospora_cerradensis -----UGCUCUGACCGUGUUGAGAGUAGUCAUAUGAUUGUCUCAAAGAUU Glomus_intraradices -----UGCUCUGACCGUGUUGAGAAUAUCGGGUUUCGGGCUCAUGCCCUA Smittium_culisetae -----UGCUCUGACCGUGUUGAGAAUAUCGGGUUUCGGGCUCCAAAGAUU Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus -----UGCUCUGACCGUGUUGAGAAUAUCGGGUUUCGGGCUCAAAAGAUU Tilletia_caries -----UGCUCUGACCGUGUUGAGAAUAUCGGGUUUCGGGCUCAUGCCCUA Mucor_circinelloides_f._lusitanicus -----UGCUCUGACCGUGUUGAGAAUAUCGGGUUUCGGGCUCCAAAGAUU Mucor_racemosus -----UACCUGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUU Rhizopus_oryzae -----UGCUCUGACCGUGUUGAGAAUAUCGGGUUUCGGGCUCCAAAGAUU Mytilus_edulis -----CAACCUGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAU Placopecten_magellanicus -----CAACCUGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAU Echinococcus_granulosus -----UACCUGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUU Drosophila_melanogaster -----AUUCUGGUUGAUCCUGCCAGUAGUUAUAUGCUUGUCUCAAAGAUU Crossodonthina_koreana -----UCCCUGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUU Androctonus_australis -----UACCUGGUGGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUU Okanagana_utahensis -----CUGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAG Artemia_salina -----UACCUGGUUGAUCCUGCCAGUAGCAUAUGCUUGUCUCAAAGAUUA Mus_musculus -----UACCUGGUUGAUCCUGCCAGUAGCAUAUGCUUGUCUCAAAGAUUA Rattus_norvegicus -----UACCUGGUUGAUCCUGCCAGUAGCAUAUGCUUGUCUCAAAGAUUA Homo_sapiens -----UACCUGGUUGAUCCUGCCAGUAGCAUAUGCUUGUCUCAAAGAUUA Oryctolagus_cuniculus -----UACCUGGUUGAUCCUGCCAGUAGCAUAUGCUUGUCUCAAAGAUUA Xenopus_borealis -----UACCUGGUUGAUCCUGCCAGUAGCAUAUGCUUGUCUCAAAGAUUA Xenopus_laevis -----UACCUGGUUGAUCCUGCCAGUAGCAUAUGCUUGUCUCAAAGAUUA Acanthamoeba_castellanii -----CGACUGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUU Balamuthia_mandrillaris -----A-------------------------------------------- Plasmodium_falciparum -----A-------------------------------------------- Plasmodium_falciparum -----G-------------------------------------------- Plasmodium_vivax -----U-------------------------------------------- Plasmodium_vivax -----A-------------------------------------------- Plasmodium_vivax -----U-------------------------------------------- Entamoeba_histolytica -----A-------------------------------------------- Ichthyophonus_hoferi -----C-------------------------------------------- Dermocystidium_sp. -----U-------------------------------------------- Sphaerothecum_destruens -----U-------------------------------------------- Acanthocoepsis_unguiculata -----U-------------------------------------------- Diaphanoeca_grandis -----U-------------------------------------------- Allomyces_macrogynus -----C-------------------------------------------- Blastocladiella_emersonii -----C-------------------------------------------- Candida_albicans -----G-------------------------------------------- Saccharomyces_cerevisiae -----A-------------------------------------------- Neurospora_crassa -----U-------------------------------------------- Podospora_anserina -----U-------------------------------------------- Coccidioides_immitis -----U-------------------------------------------- Leishmania_major -----A-------------------------------------------- Trypanosoma_cruzi -----A-------------------------------------------- Trypanosoma_brucei UGACGA-------------------------------------------- Pneumocystis_carinii -----U-------------------------------------------- Cryptococcus_neoformans_var._neoformans -----U-------------------------------------------- fungal_contaminant_of_QPX_isolate -----U-------------------------------------------- Ustilago_maydis -----U-------------------------------------------- Mnemiopsis_leidyi -----U-------------------------------------------- Tripedalia_cystophora -----U-------------------------------------------- Microciona_prolifera -----U-------------------------------------------- Psorospermium_haeckeli -----C-------------------------------------------- Euglypha_rotunda -----U-------------------------------------------- Paulinella_chromatophora -----C-------------------------------------------- Antirrhinum_majus -----U-------------------------------------------- Sesamum_indicum -----C-------------------------------------------- Digitalis_grandiflora -----C-------------------------------------------- Plantago_lanceolata -----U-------------------------------------------- Nicotiana_tabacum -----C-------------------------------------------- Arabidopsis_thaliana -----C-------------------------------------------- Sinapis_alba -----C-------------------------------------------- Solanum_tuberosum -----U-------------------------------------------- Fragaria_x_ananassa -----C-------------------------------------------- Glycine_max -----C-------------------------------------------- Oryza_sativa -----G-------------------------------------------- Zea_mays -----G-------------------------------------------- F -------------------------------------------------- Genicularia_spirotaenia -----U-------------------------------------------- F -------------------------------------------------- Cyanophora_paradoxa -----U-------------------------------------------- Glaucocystis_nostochinearum -----U-------------------------------------------- Gloeochaete_wittrockiana -----C-------------------------------------------- FChlorella'_luteoviridis -----A-------------------------------------------- Oxytricha_longa -----A-------------------------------------------- Paraurostyla_weissei -----A-------------------------------------------- Cyrtohymena_citrina -----A-------------------------------------------- Gastrostyla_steinii -----A-------------------------------------------- Pleurotricha_lanceolota -----A-------------------------------------------- Onychodromus_quadricornutus -----A-------------------------------------------- Stylonychia_lemnae -----A-------------------------------------------- Stylonychia_mytilus -----A-------------------------------------------- Engelmanniella_mobilis -----A-------------------------------------------- Oxytricha_granulifera -----A-------------------------------------------- Oxytricha_granulifera -----A-------------------------------------------- Uroleptus_gallina -----A-------------------------------------------- Uroleptus_pisces -----A-------------------------------------------- Paruroleptus_lepisma -----A-------------------------------------------- Urostyla_grandis -----A-------------------------------------------- Balantidium_coli -----G-------------------------------------------- Euplotes_aediculatus -----G-------------------------------------------- Tetrahymena_thermophila -----A-------------------------------------------- Bangia_sp._(Northwest_Territories/NWT) -----A-------------------------------------------- Bangia_sp._(Virgin_Islands/VIS7) -----G-------------------------------------------- Erythrotrichia_carnea -----A-------------------------------------------- Rhodochaete_parvula -----A-------------------------------------------- Compsopogon_coeruleus -----C-------------------------------------------- Porphyridium_aerugineum -----C-------------------------------------------- Rhodella_maculata -----U-------------------------------------------- Aulacoseira_ambigua -----U-------------------------------------------- Aulacoseira_baicalensis -----U-------------------------------------------- Stephanopyxis_nipponica -----U-------------------------------------------- Coscinodiscus_radiatus -----U-------------------------------------------- Corethron_criophilum -----C-------------------------------------------- Amphora_cf._capitellata -----U-------------------------------------------- Sellaphora_pupula_f._capitata -----U-------------------------------------------- Thalassiosira_antarctica -----U-------------------------------------------- Encyonema_triangulatum -----U-------------------------------------------- Achnanthes_bongranii -----U-------------------------------------------- F -------------------------------------------------- Diatoma_tenue -----U-------------------------------------------- Grammatophora_marina -----U-------------------------------------------- Thalassionema_sp._p474 -----U-------------------------------------------- Rhaphoneis_belgicae -----U-------------------------------------------- Undatella_sp._p446 -----U-------------------------------------------- Cymatosira_belgica -----U-------------------------------------------- Odontella_sinensis -----U-------------------------------------------- Ditylum_brightwellii -----U-------------------------------------------- Lithodesmium_undulatum -----U-------------------------------------------- Thalassiosira_eccentrica -----U-------------------------------------------- Thalassiosira_pseudonana -----U-------------------------------------------- Skeletonema_costatum -----U-------------------------------------------- Pleurosira_cf._laevis -----U-------------------------------------------- Lauderia_borealis -----U-------------------------------------------- F -------------------------------------------------- Bolidomonas_mediterranea -----U-------------------------------------------- Bolidomonas_pacifica -----G-------------------------------------------- Labyrinthuloides_minuta -----C-------------------------------------------- Leptocylindrus_danicus -----U-------------------------------------------- Chaetoceros_sp. -----U-------------------------------------------- Aphanomyces_invadans -----U-------------------------------------------- Lagenidium_giganteum -----U-------------------------------------------- Melosira_varians -----U-------------------------------------------- Blastocystis_hominis -----G-------------------------------------------- Perkinsus_marinus -----U-------------------------------------------- Toxoplasma_gondii -----U-------------------------------------------- Alexandrium_fundyense -----A-------------------------------------------- Babesia_bigemina -----A-------------------------------------------- Babesia_canis -----U-------------------------------------------- Babesia_sp._'Oklahoma_dog' -----A-------------------------------------------- Babesia_microti -----G-------------------------------------------- Babesia_microti -----G-------------------------------------------- Babesia_microti -----G-------------------------------------------- Babesia_microti -----G-------------------------------------------- Babesia_microti -----G-------------------------------------------- Babesia_rodhaini -----U-------------------------------------------- Babesia_gibsoni -----U-------------------------------------------- Babesia_bovis -----A-------------------------------------------- Jakoba_libera -----A-------------------------------------------- Reclinomonas_americana -----U-------------------------------------------- Bonamia_ostreae -----G-------------------------------------------- Audouinella_dasyae -----C-------------------------------------------- Audouinella_hermannii -----C-------------------------------------------- Nemalion_helminthoides -----C-------------------------------------------- Batrachospermum_gelatinosum -----C-------------------------------------------- Nemalionopsis_tortuosa -----C-------------------------------------------- Thorea_hispida -----G-------------------------------------------- Thorea_violacea -----G-------------------------------------------- Thorea_violacea -----A-------------------------------------------- Thorea_violacea -----A-------------------------------------------- Nemalionopsis_shawii -----C-------------------------------------------- Balbiania_investiens -----C-------------------------------------------- Batrachospermum_macrosporum -----C-------------------------------------------- Ahnfeltia_plicata -----C-------------------------------------------- Corallina_officinalis -----U-------------------------------------------- Rhodogorgon_carriebowensis -----A-------------------------------------------- Bonnemaisonia_hamifera -----A-------------------------------------------- Gelidium_vagum -----A-------------------------------------------- Chondrus_crispus -----C-------------------------------------------- Halymenia_plana -----A-------------------------------------------- Rhodymenia_leptophylla -----A-------------------------------------------- Plocamiocolax_pulvinata -----A-------------------------------------------- Ceramium_rubrum -----C-------------------------------------------- Gracilariopsis_sp. -----A-------------------------------------------- Bostrychia_moritziana -----G-------------------------------------------- Hildenbrandia_rubra -----A-------------------------------------------- Dixonielloa_grisea -----A-------------------------------------------- Naegleria_fowleri -----G-------------------------------------------- Naegleria_gruberi -----G-------------------------------------------- Hexamita_sp. -----U-------------------------------------------- Tritrichomonas_foetus -----A-------------------------------------------- Amblyospora_khaliulini -------------------------------------------------- Edhazardia_aedis -------------------------------------------------- Amblyospora_connecticus -------------------------------------------------- Intrapredatorus_barri -------------------------------------------------- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. -------------------------------------------------- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii -------------------------------------------------- Weiseria_palustris -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani -------------------------------------------------- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae -------------------------------------------------- Thelohania_solenopsae -------------------------------------------------- Visvesvaria_acridophagus -------------------------------------------------- Bacillidium_sp. -------------------------------------------------- Pseudonosema_cristatellae -------------------------------------------------- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum -------------------------------------------------- Pleistophora_mirandellae -------------------------------------------------- Trachipleistophora_hominis -------------------------------------------------- Vavraia_culicis -------------------------------------------------- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii -------------------------------------------------- F -------------------------------------------------- Dictyocoela_gammarellum -------------------------------------------------- Microsporidium_prosopium -------------------------------------------------- Antonospora_scoticae -------------------------------------------------- Paranosema_whitei -------------------------------------------------- #=GC SS_cons .................................................. Cynomorium_coccineum -------------------------------------------------- Cytinus_ruber -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Spinacia_oleracea -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Ricinus_communis -------------------------------------------------- F -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Pyramimonas_parkeae -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Pilostyles_thurberi -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Penicillium_chrysogenum -------------------------------------------------- Emericella_nidulans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Williopsis_saturnus_var._mrakii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Babesia_bovis -------------------------------------------------- Tetrahymena_pyriformis -------------------------------------------------- Suillus_sinuspaulianus -------------------------------------------------- Paramecium_tetraurelia -------------------------------------------------- Dictyostelium_discoideum -------------------------------------------------- Physarum_polycephalum AGCAACUUACUUGAUACAUGCUAGUCGAACGCUUAUAUGAGCGUGGCGUA Pylaiella_littoralis -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Hydnora_africana -------------------------------------------------- Codium_fragile -------------------------------------------------- Caulerpa_sertularioides -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cryptomonas_sp. -------------------------------------------------- Palmaria_palmata -------------------------------------------------- Heterosigma_akashiwo -------------------------------------------------- Skeletonema_pseudocostatum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Cyanidium_caldarium -------------------------------------------------- Emiliania_huxleyi -------------------------------------------------- Euglena_gracilis -------------------------------------------------- Anabaena_sp. -------------------------------------------------- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -------------------------------------------------- F -------------------------------------------------- Oscillatoria_agardhii -------------------------------------------------- Pleurocapsa_sp. -------------------------------------------------- Microcystis_aeruginosa -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos -------------------------------------------------- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Bacillus_anthracis -------------------------------------------------- Bacillus_cereus -------------------------------------------------- Enterococcus_faecalis -------------------------------------------------- Enterococcus_faecium -------------------------------------------------- Listeria_monocytogenes -------------------------------------------------- Bacillus_subtilis -------------------------------------------------- Bacillus_subtilis_A -------------------------------------------------- Bacillus_halodurans -------------------------------------------------- Staphylococcus_aureus -------------------------------------------------- Staphylococcus_aureus_N315 -------------------------------------------------- Lactococcus_lactis_subsp._lactis -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Lactobacillus_acidophilus -------------------------------------------------- Mycoplasma_capricolum -------------------------------------------------- Mycoplasma_mycoides -------------------------------------------------- Erysipelothrix_rhusiopathiae_(alpha-P15) -------------------------------------------------- Clostridium_innocuum -------------------------------------------------- Mycoplasma_genitalium -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_gallisepticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Mycoplasma_hyopneumoniae -------------------------------------------------- Fusobacterium_necrophorum -------------------------------------------------- Fusobacterium_nucleatum_subsp._nucleatum -------------------------------------------------- Streptobacillus_moniliformis -------------------------------------------------- Clostridium_botulinum_type_f -------------------------------------------------- Clostridium_tetani -------------------------------------------------- Clostridium_perfringens -------------------------------------------------- Clostridium_difficile -------------------------------------------------- Eubacterium_brachy -------------------------------------------------- Epulopiscium_sp. -------------------------------------------------- Heliobacterium_chlorum -------------------------------------------------- Glycine_max -------------------------------------------------- Oenothera_berteroana -------------------------------------------------- Secale_cereale -------------------------------------------------- Triticum_aestivum -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Gluconacetobacter_liquefaciens -------------------------------------------------- Bradyrhizobium_japonicum -------------------------------------------------- Rhodoblastus_acidophilus -------------------------------------------------- Azorhizobium_caulinodans -------------------------------------------------- Bartonella_quintana -------------------------------------------------- Mesorhizobium_loti -------------------------------------------------- Agrobacterium_tumefaciens -------------------------------------------------- Bartonella_bacilliformis -------------------------------------------------- Bartonella_henselae -------------------------------------------------- Brucella_melitensis -------------------------------------------------- Rhodobium_orientis -------------------------------------------------- F -------------------------------------------------- Rickettsia_bellii -------------------------------------------------- Rickettsia_felis_URRWXCal2 -------------------------------------------------- Rickettsia_prowazekii -------------------------------------------------- Rickettsia_prowazekii_(str._Madrid_E) -------------------------------------------------- Rickettsia_rickettsii -------------------------------------------------- Acinetobacter_calcoaceticus -------------------------------------------------- Psychrobacter_pacificensis -------------------------------------------------- Chromohalobacter_marismortui -------------------------------------------------- F -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_sp. -------------------------------------------------- Pseudomonas_putida -------------------------------------------------- Coxiella_burnetii -------------------------------------------------- Methylococcus_capsulatus -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Allochromatium_vinosum -------------------------------------------------- Beggiatoa_sp._1401-13 -------------------------------------------------- Aeromonas_hydrophila -------------------------------------------------- Shewanella_putrefaciens -------------------------------------------------- Citrobacter_freundii -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Klebsiella_pneumoniae -------------------------------------------------- Plesiomonas_shigelloides -------------------------------------------------- Yersinia_pestis -------------------------------------------------- F -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Escherichia_coli_O157:H7 -------------------------------------------------- Escherichia_coli_O157:H7_EDL933 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli_K12 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Salmonella_typhimurium -------------------------------------------------- Serratia_marcescens -------------------------------------------------- Edwardsiella_tarda -------------------------------------------------- Proteus_vulgaris -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- F -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae_(operons_A-F) -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Xanthomonas_albilineans -------------------------------------------------- Xanthomonas_campestris -------------------------------------------------- Xylella_fastidiosa -------------------------------------------------- Dichelobacter_nodosus -------------------------------------------------- Francisella_tularensis -------------------------------------------------- Bordetella_parapertussis -------------------------------------------------- Bordetella_pertussis -------------------------------------------------- Bordetella_bronchiseptica -------------------------------------------------- unidentified_proteobacterium -------------------------------------------------- Burkholderia_mallei -------------------------------------------------- Burkholderia_sp. -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -------------------------------------------------- Comamonas_testosteroni -------------------------------------------------- Desulfovibrio_desulfuricans -------------------------------------------------- Myxococcus_xanthus -------------------------------------------------- Deferribacter_thermophilus -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_hermsii -------------------------------------------------- Spirochaeta_aurantia -------------------------------------------------- Treponema_pallidum_(rRNA_A) -------------------------------------------------- Leptonema_illini -------------------------------------------------- Leptospira_interrogans -------------------------------------------------- Chlamydia_trachomatis_D/UW-3/CX -------------------------------------------------- Chlamydia_trachomatis_L2/434/BU -------------------------------------------------- Chlamydia_muridarum -------------------------------------------------- Chlamydophila_pneumoniae_AR39 -------------------------------------------------- Chlamydophila_pneumoniae -------------------------------------------------- Chlamydophila_pneumoniae_J138 -------------------------------------------------- F -------------------------------------------------- Chlamydophila_psittaci -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- Porphyromonas_gingivalis -------------------------------------------------- Prosthecochloris_vibrioformis -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_sputorum GCCUAAUACAUGCAAGUCGAACGAUGAAGUCCUAGCUUGCUAGGAUGGAU F -------------------------------------------------- Helicobacter_pylori_J99 -------------------------------------------------- Helicobacter_pylori -------------------------------------------------- Acidobacterium_capsulatum -------------------------------------------------- Holophaga_foetida -------------------------------------------------- Arthrobacter_globiformis -------------------------------------------------- Micrococcus_luteus -------------------------------------------------- Frankia_sp. -------------------------------------------------- Streptomyces_bottropensis -------------------------------------------------- Streptomyces_scabiei -------------------------------------------------- Streptomyces_neyagawaensis -------------------------------------------------- F -------------------------------------------------- Streptomyces_sp. -------------------------------------------------- Streptomyces_acidiscabies -------------------------------------------------- Streptomyces_griseus -------------------------------------------------- Streptomyces_ornatus -------------------------------------------------- Streptomyces_subrutilus -------------------------------------------------- Streptomyces_bikiniensis -------------------------------------------------- Streptomyces_galbus -------------------------------------------------- Streptomyces_hygroscopicus -------------------------------------------------- Streptomyces_lincolnensis -------------------------------------------------- Streptomyces_coelicolor -------------------------------------------------- Streptomyces_tendae -------------------------------------------------- Streptomyces_ambofaciens -------------------------------------------------- Streptomyces_eurythermus -------------------------------------------------- Streptomyces_nodosus -------------------------------------------------- Streptomyces_sampsonii -------------------------------------------------- Streptomyces_glaucescens -------------------------------------------------- Streptomyces_pseudogriseolus -------------------------------------------------- Streptomyces_caelestis -------------------------------------------------- Streptomyces_bluensis -------------------------------------------------- Streptomyces_espinosus -------------------------------------------------- Streptomyces_mashuensis -------------------------------------------------- Streptomyces_rimosus -------------------------------------------------- Streptomyces_limosus -------------------------------------------------- Streptomyces_odorifer -------------------------------------------------- Streptomyces_felleus -------------------------------------------------- Streptomyces_albidoflavus -------------------------------------------------- Streptomyces_gougerotii -------------------------------------------------- Streptomyces_rutgersensis -------------------------------------------------- Streptomyces_intermedius -------------------------------------------------- F -------------------------------------------------- Streptomyces_thermoviolaceus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus -------------------------------------------------- Streptomyces_megasporus -------------------------------------------------- Streptomyces_thermolineatus -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_avium -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides -------------------------------------------------- Rhodococcus_erythropolis -------------------------------------------------- Corynebacterium_diphtheriae -------------------------------------------------- Actinomyces_israelii -------------------------------------------------- Brachyspira_hyodysenteriae -------------------------------------------------- Geotoga_subterranea -------------------------------------------------- Petrotoga_miotherma -------------------------------------------------- Brevinema_andersonii -------------------------------------------------- Herpetosiphon_aurantiacus -------------------------------------------------- F -------------------------------------------------- Aquifex_aeolicus -------------------------------------------------- Aquifex_pyrophilus -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- Thermus_aquaticus -------------------------------------------------- Thermomicrobium_roseum -------------------------------------------------- Pirellula_marina -------------------------------------------------- Pirellula_staleyi -------------------------------------------------- Planctomycetaceae_Schlesner_670 -------------------------------------------------- Gemmata_obscuriglobus -------------------------------------------------- Isosphaera_pallida -------------------------------------------------- Pyrococcus_abyssi -------------------------------------------------- Pyrococcus_horikoshii -------------------------------------------------- Pyrococcus_furiosus -------------------------------------------------- Thermococcus_celer -------------------------------------------------- Archaeoglobus_fulgidus -------------------------------------------------- Nanoarchaeum_equitans -------------------------------------------------- Aeropyrum_pernix_(str._K1) -------------------------------------------------- Pyrodictium_occultum -------------------------------------------------- Thermoproteus_tenax -------------------------------------------------- Sulfolobus_acidocaldarius -------------------------------------------------- Sulfolobus_solfataricus -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum -------------------------------------------------- Methanococcus_vannielii -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -------------------------------------------------- Natronorubrum_bangense -------------------------------------------------- Natronobacterium_innermongoliae -------------------------------------------------- Haloferax_volcanii -------------------------------------------------- Methanospirillum_hungatei -------------------------------------------------- Picrophilus_torridus_DSM_9790 -------------------------------------------------- Thermoplasma_acidophilum -------------------------------------------------- Giardia_ardeae -------------------------------------------------- Giardia_intestinalis -------------------------------------------------- Giardia_muris -------------------------------------------------- Amblyospora_bracteata -------------------------------------------------- Glomus_sp._W3349 AAGCCAUGCAUGUCUAAGUAUAAAUCGAUUAUACAGGUGAAACUGCGAAU Scutellospora_cerradensis AAGCCAUGCAUGUCUAAGUAUAAAUCGUUUAUACAGGUGAAACUGCGAAU Glomus_intraradices CAGCCAUGCAUGUCUAGUAUAAUCGUUAUACAGGUGAAACUGCGAAUGGC Smittium_culisetae AAGCCAUGCAUUGUCUAAGUAUAAACAAAUUUAUACAGUGAAACUGCGAA Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus AAGCCAUGCAUGUCUAAGUAUAAGCACUUUAUACUGUGAAACUGCGAAUG Tilletia_caries CGAUCAUGCAUGUCUAAGUAUAAGCAACUUUAUACUGUGAAACUGCGAAU Mucor_circinelloides_f._lusitanicus AAGCCAUGCAUGUCUAAGUAUAAAUAAAUUUAUAUUGUGAAACUGCGAAU Mucor_racemosus AAGCCAUGCAUGUCUAAGUAUAAAUAAAUUUAUAUUGUGAAACUGCGAAU Rhizopus_oryzae AAGCCAUGCAUGUCUAAGUAUAAAUAACUUUAUAUUGUGAAACUGCGAAU Mytilus_edulis UAAGCCAUGCAUGUCUAAGUACAUACUUUUACAUAGUGAAACCGCGAAUG Placopecten_magellanicus UAAGCCAUGCAUGUCUAAGUACAUACUUUUUGAUGGUGAAACCGCGAAUG Echinococcus_granulosus AAGCCAUGCAUGUCUCA--------------------------------- Drosophila_melanogaster AAGCCAUGCAUGUCUAAGUACACACGAAUUAAAAGUGAAACCGCAAAAGG Crossodonthina_koreana AAGCCAUGCAUGUCUAAGUUCAAGCGAAAAAUAAAGUGAAACCGCGAAUG Androctonus_australis AAGCCAUGCAUGUCUAAGUACAUACCGAAAUAAGGUGAAACCGCGAAUGG Okanagana_utahensis CCAUGCAAGUCUCAGUACAUACCUAACUAAGGUGAAACCGCAAAAGGCUC Artemia_salina AGCCAUGCAUGUCUAAGUACAAGCCCCCAGUGGGCGAAACCGCGAAUGGC Mus_musculus AGCCAUGCAUGUCUAAGUACGCACGGCCGGUACAGUGAAACUGCGAAUGG Rattus_norvegicus AGCCAUGCAUGUCUAAGUACGCACGGCCGGUACAGUGAAACUGCGAAUGG Homo_sapiens AGCCAUGCAUGUCUAAGUACGCACGGCCGGUACAGUGAAACUGCGAAUGG Oryctolagus_cuniculus AGCCAUGCAUGUCUAAGUACGCACGGCCGGUACAGUGAAACUGCGAAUGG Xenopus_borealis AGCCAUGCACGUGUAAGUACGCACGGCCGGUACAGUGAAACUGCGAAUGG Xenopus_laevis AGCCAUGCACGUGUAAGUACGCACGGCCGGUACAGUGAAACUGCGAAUGG Acanthamoeba_castellanii AAGCCAUGCAUGUCUAA--------------------------------- Balamuthia_mandrillaris -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Entamoeba_histolytica -------------------------------------------------- Ichthyophonus_hoferi -------------------------------------------------- Dermocystidium_sp. -------------------------------------------------- Sphaerothecum_destruens -------------------------------------------------- Acanthocoepsis_unguiculata -------------------------------------------------- Diaphanoeca_grandis -------------------------------------------------- Allomyces_macrogynus -------------------------------------------------- Blastocladiella_emersonii -------------------------------------------------- Candida_albicans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Coccidioides_immitis -------------------------------------------------- Leishmania_major -------------------------------------------------- Trypanosoma_cruzi -------------------------------------------------- Trypanosoma_brucei -------------------------------------------------- Pneumocystis_carinii -------------------------------------------------- Cryptococcus_neoformans_var._neoformans -------------------------------------------------- fungal_contaminant_of_QPX_isolate -------------------------------------------------- Ustilago_maydis -------------------------------------------------- Mnemiopsis_leidyi -------------------------------------------------- Tripedalia_cystophora -------------------------------------------------- Microciona_prolifera -------------------------------------------------- Psorospermium_haeckeli -------------------------------------------------- Euglypha_rotunda -------------------------------------------------- Paulinella_chromatophora -------------------------------------------------- Antirrhinum_majus -------------------------------------------------- Sesamum_indicum -------------------------------------------------- Digitalis_grandiflora -------------------------------------------------- Plantago_lanceolata -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Arabidopsis_thaliana -------------------------------------------------- Sinapis_alba -------------------------------------------------- Solanum_tuberosum -------------------------------------------------- Fragaria_x_ananassa -------------------------------------------------- Glycine_max -------------------------------------------------- Oryza_sativa -------------------------------------------------- Zea_mays -------------------------------------------------- F -------------------------------------------------- Genicularia_spirotaenia -------------------------------------------------- F -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- FChlorella'_luteoviridis -------------------------------------------------- Oxytricha_longa -------------------------------------------------- Paraurostyla_weissei -------------------------------------------------- Cyrtohymena_citrina -------------------------------------------------- Gastrostyla_steinii -------------------------------------------------- Pleurotricha_lanceolota -------------------------------------------------- Onychodromus_quadricornutus -------------------------------------------------- Stylonychia_lemnae -------------------------------------------------- Stylonychia_mytilus -------------------------------------------------- Engelmanniella_mobilis -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Uroleptus_gallina -------------------------------------------------- Uroleptus_pisces -------------------------------------------------- Paruroleptus_lepisma -------------------------------------------------- Urostyla_grandis -------------------------------------------------- Balantidium_coli -------------------------------------------------- Euplotes_aediculatus -------------------------------------------------- Tetrahymena_thermophila -------------------------------------------------- Bangia_sp._(Northwest_Territories/NWT) -------------------------------------------------- Bangia_sp._(Virgin_Islands/VIS7) -------------------------------------------------- Erythrotrichia_carnea -------------------------------------------------- Rhodochaete_parvula -------------------------------------------------- Compsopogon_coeruleus -------------------------------------------------- Porphyridium_aerugineum -------------------------------------------------- Rhodella_maculata -------------------------------------------------- Aulacoseira_ambigua -------------------------------------------------- Aulacoseira_baicalensis -------------------------------------------------- Stephanopyxis_nipponica -------------------------------------------------- Coscinodiscus_radiatus -------------------------------------------------- Corethron_criophilum -------------------------------------------------- Amphora_cf._capitellata -------------------------------------------------- Sellaphora_pupula_f._capitata -------------------------------------------------- Thalassiosira_antarctica -------------------------------------------------- Encyonema_triangulatum -------------------------------------------------- Achnanthes_bongranii -------------------------------------------------- F -------------------------------------------------- Diatoma_tenue -------------------------------------------------- Grammatophora_marina -------------------------------------------------- Thalassionema_sp._p474 -------------------------------------------------- Rhaphoneis_belgicae -------------------------------------------------- Undatella_sp._p446 -------------------------------------------------- Cymatosira_belgica -------------------------------------------------- Odontella_sinensis -------------------------------------------------- Ditylum_brightwellii -------------------------------------------------- Lithodesmium_undulatum -------------------------------------------------- Thalassiosira_eccentrica -------------------------------------------------- Thalassiosira_pseudonana -------------------------------------------------- Skeletonema_costatum -------------------------------------------------- Pleurosira_cf._laevis -------------------------------------------------- Lauderia_borealis -------------------------------------------------- F -------------------------------------------------- Bolidomonas_mediterranea -------------------------------------------------- Bolidomonas_pacifica -------------------------------------------------- Labyrinthuloides_minuta -------------------------------------------------- Leptocylindrus_danicus -------------------------------------------------- Chaetoceros_sp. -------------------------------------------------- Aphanomyces_invadans -------------------------------------------------- Lagenidium_giganteum -------------------------------------------------- Melosira_varians -------------------------------------------------- Blastocystis_hominis -------------------------------------------------- Perkinsus_marinus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Alexandrium_fundyense -------------------------------------------------- Babesia_bigemina -------------------------------------------------- Babesia_canis -------------------------------------------------- Babesia_sp._'Oklahoma_dog' -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_rodhaini -------------------------------------------------- Babesia_gibsoni -------------------------------------------------- Babesia_bovis -------------------------------------------------- Jakoba_libera -------------------------------------------------- Reclinomonas_americana -------------------------------------------------- Bonamia_ostreae -------------------------------------------------- Audouinella_dasyae -------------------------------------------------- Audouinella_hermannii -------------------------------------------------- Nemalion_helminthoides -------------------------------------------------- Batrachospermum_gelatinosum -------------------------------------------------- Nemalionopsis_tortuosa -------------------------------------------------- Thorea_hispida -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Nemalionopsis_shawii -------------------------------------------------- Balbiania_investiens -------------------------------------------------- Batrachospermum_macrosporum -------------------------------------------------- Ahnfeltia_plicata -------------------------------------------------- Corallina_officinalis -------------------------------------------------- Rhodogorgon_carriebowensis -------------------------------------------------- Bonnemaisonia_hamifera -------------------------------------------------- Gelidium_vagum -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Halymenia_plana -------------------------------------------------- Rhodymenia_leptophylla -------------------------------------------------- Plocamiocolax_pulvinata -------------------------------------------------- Ceramium_rubrum -------------------------------------------------- Gracilariopsis_sp. -------------------------------------------------- Bostrychia_moritziana -------------------------------------------------- Hildenbrandia_rubra -------------------------------------------------- Dixonielloa_grisea -------------------------------------------------- Naegleria_fowleri -------------------------------------------------- Naegleria_gruberi -------------------------------------------------- Hexamita_sp. -------------------------------------------------- Tritrichomonas_foetus -------------------------------------------------- Amblyospora_khaliulini -------------------------------------------------- Edhazardia_aedis -------------------------------------------------- Amblyospora_connecticus -------------------------------------------------- Intrapredatorus_barri -------------------------------------------------- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. -------------------------------------------------- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii -------------------------------------------------- Weiseria_palustris -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani -------------------------------------------------- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae -------------------------------------------------- Thelohania_solenopsae -------------------------------------------------- Visvesvaria_acridophagus -------------------------------------------------- Bacillidium_sp. -------------------------------------------------- Pseudonosema_cristatellae -------------------------------------------------- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum -------------------------------------------------- Pleistophora_mirandellae -------------------------------------------------- Trachipleistophora_hominis -------------------------------------------------- Vavraia_culicis -------------------------------------------------- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii -------------------------------------------------- F -------------------------------------------------- Dictyocoela_gammarellum -------------------------------------------------- Microsporidium_prosopium -------------------------------------------------- Antonospora_scoticae -------------------------------------------------- Paranosema_whitei -------------------------------------------------- #=GC SS_cons .................................................. Cynomorium_coccineum -------------------------------------------------- Cytinus_ruber -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Spinacia_oleracea -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Ricinus_communis -------------------------------------------------- F -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Pyramimonas_parkeae -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Pilostyles_thurberi -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Penicillium_chrysogenum -------------------------------------------------- Emericella_nidulans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Williopsis_saturnus_var._mrakii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Babesia_bovis -------------------------------------------------- Tetrahymena_pyriformis -------------AAAAAAAA----------------------------- Suillus_sinuspaulianus -------------AAAAGAAA----------------------------- Paramecium_tetraurelia -------------UUUAGUUG----------------------------- Dictyostelium_discoideum -------------------------------------------------- Physarum_polycephalum CGAGCGACAAGGGCAAAGAUA----------------------------- Pylaiella_littoralis -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Hydnora_africana -------------------------------------------------- Codium_fragile -------------------------------------------------- Caulerpa_sertularioides -------------------------------------------------- F -------------------------------------------------- F -------------GAUCGCUG----------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cryptomonas_sp. -------------------------------------------------- Palmaria_palmata -------------------------------------------------- Heterosigma_akashiwo -------------------UU----------------------------- Skeletonema_pseudocostatum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Cyanidium_caldarium -------------------------------------------------- Emiliania_huxleyi -------------------------------------------------- Euglena_gracilis -------------------------------------------------- Anabaena_sp. -------------------------------------------------- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -------------------------------------------------- F -------------------------------------------------- Oscillatoria_agardhii -------------------------------------------------- Pleurocapsa_sp. -------------------------------------------------- Microcystis_aeruginosa -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos -------------------------------------------------- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Bacillus_anthracis -------------------------------------------------- Bacillus_cereus -------------------------------------------------- Enterococcus_faecalis -------------------------------------------------- Enterococcus_faecium -------------------------------------------------- Listeria_monocytogenes -------------------------------------------------- Bacillus_subtilis -------------------------------------------------- Bacillus_subtilis_A -------------------------------------------------- Bacillus_halodurans -------------------------------------------------- Staphylococcus_aureus -------------------------------------------------- Staphylococcus_aureus_N315 -------------------------------------------------- Lactococcus_lactis_subsp._lactis -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Lactobacillus_acidophilus -------------------------------------------------- Mycoplasma_capricolum -------------------------------------------------- Mycoplasma_mycoides -------------------------------------------------- Erysipelothrix_rhusiopathiae_(alpha-P15) -------------------------------------------------- Clostridium_innocuum -------------------------------------------------- Mycoplasma_genitalium -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_gallisepticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Mycoplasma_hyopneumoniae -------------------------------------------------- Fusobacterium_necrophorum -------------------------------------------------- Fusobacterium_nucleatum_subsp._nucleatum -------------------------------------------------- Streptobacillus_moniliformis -------------------------------------------------- Clostridium_botulinum_type_f -------------------------------------------------- Clostridium_tetani -------------------------------------------------- Clostridium_perfringens -------------------------------------------------- Clostridium_difficile -------------------------------------------------- Eubacterium_brachy -------------------------------------------------- Epulopiscium_sp. -------------------------------------------------- Heliobacterium_chlorum -------------------------------------------------- Glycine_max -------------------------------------------------- Oenothera_berteroana -------------------------------------------------- Secale_cereale -------------------------------------------------- Triticum_aestivum -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Gluconacetobacter_liquefaciens -------------------------------------------------- Bradyrhizobium_japonicum -------------------------------------------------- Rhodoblastus_acidophilus -------------------------------------------------- Azorhizobium_caulinodans -------------------------------------------------- Bartonella_quintana -------------------------------------------------- Mesorhizobium_loti -------------------------------------------------- Agrobacterium_tumefaciens -------------------------------------------------- Bartonella_bacilliformis -------------------------------------------------- Bartonella_henselae -------------------------------------------------- Brucella_melitensis -------------------------------------------------- Rhodobium_orientis -------------------------------------------------- F -------------------------------------------------- Rickettsia_bellii -------------------------------------------------- Rickettsia_felis_URRWXCal2 -------------------------------------------------- Rickettsia_prowazekii -------------------------------------------------- Rickettsia_prowazekii_(str._Madrid_E) -------------------------------------------------- Rickettsia_rickettsii -------------------------------------------------- Acinetobacter_calcoaceticus -------------------------------------------------- Psychrobacter_pacificensis -------------------------------------------------- Chromohalobacter_marismortui -------------------------------------------------- F -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_sp. -------------------------------------------------- Pseudomonas_putida -------------------------------------------------- Coxiella_burnetii -------------------------------------------------- Methylococcus_capsulatus -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Allochromatium_vinosum -------------------------------------------------- Beggiatoa_sp._1401-13 -------------------------------------------------- Aeromonas_hydrophila -------------------------------------------------- Shewanella_putrefaciens -------------------------------------------------- Citrobacter_freundii -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Klebsiella_pneumoniae -------------------------------------------------- Plesiomonas_shigelloides -------------------------------------------------- Yersinia_pestis -------------------------------------------------- F -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Escherichia_coli_O157:H7 -------------------------------------------------- Escherichia_coli_O157:H7_EDL933 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli_K12 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Salmonella_typhimurium -------------------------------------------------- Serratia_marcescens -------------------------------------------------- Edwardsiella_tarda -------------------------------------------------- Proteus_vulgaris -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- F -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae_(operons_A-F) -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Xanthomonas_albilineans -------------------------------------------------- Xanthomonas_campestris -------------------------------------------------- Xylella_fastidiosa -------------------------------------------------- Dichelobacter_nodosus -------------------------------------------------- Francisella_tularensis -------------------------------------------------- Bordetella_parapertussis -------------------------------------------------- Bordetella_pertussis -------------------------------------------------- Bordetella_bronchiseptica -------------------------------------------------- unidentified_proteobacterium -------------------------------------------------- Burkholderia_mallei -------------------------------------------------- Burkholderia_sp. -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -------------------------------------------------- Comamonas_testosteroni -------------------------------------------------- Desulfovibrio_desulfuricans -------------------------------------------------- Myxococcus_xanthus -------------------------------------------------- Deferribacter_thermophilus -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_hermsii -------------------------------------------------- Spirochaeta_aurantia -------------------------------------------------- Treponema_pallidum_(rRNA_A) -------------------------------------------------- Leptonema_illini -------------------------------------------------- Leptospira_interrogans -------------------------------------------------- Chlamydia_trachomatis_D/UW-3/CX -------------------------------------------------- Chlamydia_trachomatis_L2/434/BU -------------------------------------------------- Chlamydia_muridarum -------------------------------------------------- Chlamydophila_pneumoniae_AR39 -------------------------------------------------- Chlamydophila_pneumoniae -------------------------------------------------- Chlamydophila_pneumoniae_J138 -------------------------------------------------- F -------------------------------------------------- Chlamydophila_psittaci -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- Porphyromonas_gingivalis -------------------------------------------------- Prosthecochloris_vibrioformis -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_sputorum UAGUGGCGCACGGGUGAGUAAUGUAUAGCUAAUCUGCCCCAUAGAGAGGA F -------------------------------------------------- Helicobacter_pylori_J99 -------------------------------------------------- Helicobacter_pylori -------------------------------------------------- Acidobacterium_capsulatum -------------------------------------------------- Holophaga_foetida -------------------------------------------------- Arthrobacter_globiformis -------------------------------------------------- Micrococcus_luteus -------------------------------------------------- Frankia_sp. -------------------------------------------------- Streptomyces_bottropensis -------------------------------------------------- Streptomyces_scabiei -------------------------------------------------- Streptomyces_neyagawaensis -------------------------------------------------- F -------------------------------------------------- Streptomyces_sp. -------------------------------------------------- Streptomyces_acidiscabies -------------------------------------------------- Streptomyces_griseus -------------------------------------------------- Streptomyces_ornatus -------------------------------------------------- Streptomyces_subrutilus -------------------------------------------------- Streptomyces_bikiniensis -------------------------------------------------- Streptomyces_galbus -------------------------------------------------- Streptomyces_hygroscopicus -------------------------------------------------- Streptomyces_lincolnensis -------------------------------------------------- Streptomyces_coelicolor -------------------------------------------------- Streptomyces_tendae -------------------------------------------------- Streptomyces_ambofaciens -------------------------------------------------- Streptomyces_eurythermus -------------------------------------------------- Streptomyces_nodosus -------------------------------------------------- Streptomyces_sampsonii -------------------------------------------------- Streptomyces_glaucescens -------------------------------------------------- Streptomyces_pseudogriseolus -------------------------------------------------- Streptomyces_caelestis -------------------------------------------------- Streptomyces_bluensis -------------------------------------------------- Streptomyces_espinosus -------------------------------------------------- Streptomyces_mashuensis -------------------------------------------------- Streptomyces_rimosus -------------------------------------------------- Streptomyces_limosus -------------------------------------------------- Streptomyces_odorifer -------------------------------------------------- Streptomyces_felleus -------------------------------------------------- Streptomyces_albidoflavus -------------------------------------------------- Streptomyces_gougerotii -------------------------------------------------- Streptomyces_rutgersensis -------------------------------------------------- Streptomyces_intermedius -------------------------------------------------- F -------------------------------------------------- Streptomyces_thermoviolaceus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus -------------------------------------------------- Streptomyces_megasporus -------------------------------------------------- Streptomyces_thermolineatus -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_avium -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides -------------------------------------------------- Rhodococcus_erythropolis -------------------------------------------------- Corynebacterium_diphtheriae -------------------------------------------------- Actinomyces_israelii -------------------------------------------------- Brachyspira_hyodysenteriae -------------------------------------------------- Geotoga_subterranea -------------------------------------------------- Petrotoga_miotherma -------------------------------------------------- Brevinema_andersonii -------------------------------------------------- Herpetosiphon_aurantiacus -------------------------------------------------- F -------------------------------------------------- Aquifex_aeolicus -------------------------------------------------- Aquifex_pyrophilus -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- Thermus_aquaticus -------------------------------------------------- Thermomicrobium_roseum -------------------------------------------------- Pirellula_marina -------------------------------------------------- Pirellula_staleyi -------------------------------------------------- Planctomycetaceae_Schlesner_670 -------------------------------------------------- Gemmata_obscuriglobus -------------------------------------------------- Isosphaera_pallida -------------------------------------------------- Pyrococcus_abyssi -------------------------------------------------- Pyrococcus_horikoshii -------------------------------------------------- Pyrococcus_furiosus -------------------------------------------------- Thermococcus_celer -------------------------------------------------- Archaeoglobus_fulgidus -------------------------------------------------- Nanoarchaeum_equitans -------------------------------------------------- Aeropyrum_pernix_(str._K1) -------------------------------------------------- Pyrodictium_occultum -------------------------------------------------- Thermoproteus_tenax -------------------------------------------------- Sulfolobus_acidocaldarius -------------------------------------------------- Sulfolobus_solfataricus -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum -------------------------------------------------- Methanococcus_vannielii -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -------------------------------------------------- Natronorubrum_bangense -------------------------------------------------- Natronobacterium_innermongoliae -------------------------------------------------- Haloferax_volcanii -------------------------------------------------- Methanospirillum_hungatei -------------------------------------------------- Picrophilus_torridus_DSM_9790 -------------------------------------------------- Thermoplasma_acidophilum -------------------------------------------------- Giardia_ardeae -------------------------------------------------- Giardia_intestinalis -------------------------------------------------- Giardia_muris -------------------------------------------------- Amblyospora_bracteata -------------------------------------------------- Glomus_sp._W3349 GGCUCAUUAAAUCAGUUAUAGUUUAUUUGAUAGUACCUUACUACUUGGAU Scutellospora_cerradensis GGCUCAUUAAAUCAGUUAUAGUUUAUUUGAUAGUACAAU----------- Glomus_intraradices UCAUUAAAUCAGUUAUAAUUUAUUUGAUAGUACCU--------------- Smittium_culisetae UGGCUCAUUAUAUCAGUUAUAAUUUAUUUGAUGAUACCUUUUACUACUUG Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus GCUCAUUAAAUCAGUUAUCGUUUAUUUGAUAGUACCU------------- Tilletia_caries GGCUCAUUAAAUCAGUUAUAGUUUAUUUGAUGGUACUUU----------- Mucor_circinelloides_f._lusitanicus GGCUCAUUAAAUCAGUUAUGAUCUACGUGACAUAUUCUU----------- Mucor_racemosus GGCUCAUUAAAUCAGUUAUGAUCUACGUGACAUAUUCUU----------- Rhizopus_oryzae GGCUCAUUAAAUCAGUUAUGAUCUACGUGACAAAUUCUU----------- Mytilus_edulis GCUCAUUAAAUCAGUUAUGGUUCCUUAGAUCGUACAAUCCUACUUGGAUA Placopecten_magellanicus GCUCAUUAAAUCAGUUAUGGUUCCUUAGAUCGUACGAUCCUACUUGGAU- Echinococcus_granulosus -------------------------------------------------- Drosophila_melanogaster CUCAUUAUAUCAGUUAUGGUUCCUUAGAUCGUUAACAGUUACUUGGAUAA Crossodonthina_koreana GCUCAUUAUAUCAGUUAUGGUUCCUUAGAUCGUACUUACUACUUGGAUAA Androctonus_australis CUCAUUAAAUCAGUUACGGUUCCUUAGACUGUACUUUCCUACUUGGAUAA Okanagana_utahensis AUUAAAUCAGUUAUGGUUCCUUGGAUCUUAACCCGUUACUUGGAUAACUG Artemia_salina UCAAUAAAUCAGUUAUGGUUCCUUAGAUCGUACUAUAUCCUACUUGGAUA Mus_musculus CUCAUUAAAUCAGUUAUGGUUCCUUUGGUCGCUCGCUCCUCUCCUACUUG Rattus_norvegicus CUCAUUAAAUCAGUUAUGGUUCCUUUGGUCGCUCGCUCCUCUCCUACUUG Homo_sapiens CUCAUUAAAUCAGUUAUGGUUCCUUUGGUCGCUCGCUCCUCUCCUACUUG Oryctolagus_cuniculus CUCAUUAAAUCAGUUAUGGUUCCUUUGGUCGCUCGCUCCUCUCCUACUUG Xenopus_borealis CUCAUUAAAUCAGUUAUGGUUCCUUUGAUCGCUCCAUCUGUUACUUGGAU Xenopus_laevis CUCAUUAAAUCAGUUAUGGUUCCUUUGAUCGCUCCAUCUGUUACUUGGAU Acanthamoeba_castellanii -------------------------------------------------- Balamuthia_mandrillaris -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Entamoeba_histolytica -------------------------------------------------- Ichthyophonus_hoferi -------------------------------------------------- Dermocystidium_sp. -------------------------------------------------- Sphaerothecum_destruens -------------------------------------------------- Acanthocoepsis_unguiculata -------------------------------------------------- Diaphanoeca_grandis -------------------------------------------------- Allomyces_macrogynus -------------------------------------------------- Blastocladiella_emersonii -------------------------------------------------- Candida_albicans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Coccidioides_immitis -------------------------------------------------- Leishmania_major -------------------------------------------------- Trypanosoma_cruzi -------------------------------------------------- Trypanosoma_brucei -------------------------------------------------- Pneumocystis_carinii -------------------------------------------------- Cryptococcus_neoformans_var._neoformans -------------------------------------------------- fungal_contaminant_of_QPX_isolate -------------------------------------------------- Ustilago_maydis -------------------------------------------------- Mnemiopsis_leidyi -------------------------------------------------- Tripedalia_cystophora -------------------------------------------------- Microciona_prolifera -------------------------------------------------- Psorospermium_haeckeli -------------------------------------------------- Euglypha_rotunda -------------------------------------------------- Paulinella_chromatophora -------------------------------------------------- Antirrhinum_majus -------------------------------------------------- Sesamum_indicum -------------------------------------------------- Digitalis_grandiflora -------------------------------------------------- Plantago_lanceolata -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Arabidopsis_thaliana -------------------------------------------------- Sinapis_alba -------------------------------------------------- Solanum_tuberosum -------------------------------------------------- Fragaria_x_ananassa -------------------------------------------------- Glycine_max -------------------------------------------------- Oryza_sativa -------------------------------------------------- Zea_mays -------------------------------------------------- F -------------------------------------------------- Genicularia_spirotaenia -------------------------------------------------- F -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- FChlorella'_luteoviridis -------------------------------------------------- Oxytricha_longa -------------------------------------------------- Paraurostyla_weissei -------------------------------------------------- Cyrtohymena_citrina -------------------------------------------------- Gastrostyla_steinii -------------------------------------------------- Pleurotricha_lanceolota -------------------------------------------------- Onychodromus_quadricornutus -------------------------------------------------- Stylonychia_lemnae -------------------------------------------------- Stylonychia_mytilus -------------------------------------------------- Engelmanniella_mobilis -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Uroleptus_gallina -------------------------------------------------- Uroleptus_pisces -------------------------------------------------- Paruroleptus_lepisma -------------------------------------------------- Urostyla_grandis -------------------------------------------------- Balantidium_coli -------------------------------------------------- Euplotes_aediculatus -------------------------------------------------- Tetrahymena_thermophila -------------------------------------------------- Bangia_sp._(Northwest_Territories/NWT) -------------------------------------------------- Bangia_sp._(Virgin_Islands/VIS7) -------------------------------------------------- Erythrotrichia_carnea -------------------------------------------------- Rhodochaete_parvula -------------------------------------------------- Compsopogon_coeruleus -------------------------------------------------- Porphyridium_aerugineum -------------------------------------------------- Rhodella_maculata -------------------------------------------------- Aulacoseira_ambigua -------------------------------------------------- Aulacoseira_baicalensis -------------------------------------------------- Stephanopyxis_nipponica -------------------------------------------------- Coscinodiscus_radiatus -------------------------------------------------- Corethron_criophilum -------------------------------------------------- Amphora_cf._capitellata -------------------------------------------------- Sellaphora_pupula_f._capitata -------------------------------------------------- Thalassiosira_antarctica -------------------------------------------------- Encyonema_triangulatum -------------------------------------------------- Achnanthes_bongranii -------------------------------------------------- F -------------------------------------------------- Diatoma_tenue -------------------------------------------------- Grammatophora_marina -------------------------------------------------- Thalassionema_sp._p474 -------------------------------------------------- Rhaphoneis_belgicae -------------------------------------------------- Undatella_sp._p446 -------------------------------------------------- Cymatosira_belgica -------------------------------------------------- Odontella_sinensis -------------------------------------------------- Ditylum_brightwellii -------------------------------------------------- Lithodesmium_undulatum -------------------------------------------------- Thalassiosira_eccentrica -------------------------------------------------- Thalassiosira_pseudonana -------------------------------------------------- Skeletonema_costatum -------------------------------------------------- Pleurosira_cf._laevis -------------------------------------------------- Lauderia_borealis -------------------------------------------------- F -------------------------------------------------- Bolidomonas_mediterranea -------------------------------------------------- Bolidomonas_pacifica -------------------------------------------------- Labyrinthuloides_minuta -------------------------------------------------- Leptocylindrus_danicus -------------------------------------------------- Chaetoceros_sp. -------------------------------------------------- Aphanomyces_invadans -------------------------------------------------- Lagenidium_giganteum -------------------------------------------------- Melosira_varians -------------------------------------------------- Blastocystis_hominis -------------------------------------------------- Perkinsus_marinus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Alexandrium_fundyense -------------------------------------------------- Babesia_bigemina -------------------------------------------------- Babesia_canis -------------------------------------------------- Babesia_sp._'Oklahoma_dog' -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_rodhaini -------------------------------------------------- Babesia_gibsoni -------------------------------------------------- Babesia_bovis -------------------------------------------------- Jakoba_libera -------------------------------------------------- Reclinomonas_americana -------------------------------------------------- Bonamia_ostreae -------------------------------------------------- Audouinella_dasyae -------------------------------------------------- Audouinella_hermannii -------------------------------------------------- Nemalion_helminthoides -------------------------------------------------- Batrachospermum_gelatinosum -------------------------------------------------- Nemalionopsis_tortuosa -------------------------------------------------- Thorea_hispida -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Nemalionopsis_shawii -------------------------------------------------- Balbiania_investiens -------------------------------------------------- Batrachospermum_macrosporum -------------------------------------------------- Ahnfeltia_plicata -------------------------------------------------- Corallina_officinalis -------------------------------------------------- Rhodogorgon_carriebowensis -------------------------------------------------- Bonnemaisonia_hamifera -------------------------------------------------- Gelidium_vagum -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Halymenia_plana -------------------------------------------------- Rhodymenia_leptophylla -------------------------------------------------- Plocamiocolax_pulvinata -------------------------------------------------- Ceramium_rubrum -------------------------------------------------- Gracilariopsis_sp. -------------------------------------------------- Bostrychia_moritziana -------------------------------------------------- Hildenbrandia_rubra -------------------------------------------------- Dixonielloa_grisea -------------------------------------------------- Naegleria_fowleri -------------------------------------------------- Naegleria_gruberi -------------------------------------------------- Hexamita_sp. -------------------------------------------------- Tritrichomonas_foetus -------------------------------------------------- Amblyospora_khaliulini -------------------------------------------------- Edhazardia_aedis -------------------------------------------------- Amblyospora_connecticus -------------------------------------------------- Intrapredatorus_barri -------------------------------------------------- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. -------------------------------------------------- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii -------------------------------------------------- Weiseria_palustris -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani -------------------------------------------------- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae -------------------------------------------------- Thelohania_solenopsae -------------------------------------------------- Visvesvaria_acridophagus -------------------------------------------------- Bacillidium_sp. -------------------------------------------------- Pseudonosema_cristatellae -------------------------------------------------- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum -------------------------------------------------- Pleistophora_mirandellae -------------------------------------------------- Trachipleistophora_hominis -------------------------------------------------- Vavraia_culicis -------------------------------------------------- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii -------------------------------------------------- F -------------------------------------------------- Dictyocoela_gammarellum -------------------------------------------------- Microsporidium_prosopium -------------------------------------------------- Antonospora_scoticae -------------------------------------------------- Paranosema_whitei -------------------------------------------------- #=GC SS_cons .................................................. Cynomorium_coccineum -------------------------------------------------- Cytinus_ruber -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Spinacia_oleracea -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Ricinus_communis -------------------------------------------------- F -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Pyramimonas_parkeae -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Pilostyles_thurberi -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Penicillium_chrysogenum -------------------------------------------------- Emericella_nidulans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Williopsis_saturnus_var._mrakii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Babesia_bovis -------------------------------------------------- Tetrahymena_pyriformis -------------------------------------------------- Suillus_sinuspaulianus -------------------------------------------------- Paramecium_tetraurelia -------------------------------------------------- Dictyostelium_discoideum -------------------------------------------------- Physarum_polycephalum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Hydnora_africana -------------------------------------------------- Codium_fragile -------------------------------------------------- Caulerpa_sertularioides -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cryptomonas_sp. -------------------------------------------------- Palmaria_palmata -------------------------------------------------- Heterosigma_akashiwo -------------------------------------------------- Skeletonema_pseudocostatum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Cyanidium_caldarium -------------------------------------------------- Emiliania_huxleyi -------------------------------------------------- Euglena_gracilis -------------------------------------------------- Anabaena_sp. -------------------------------------------------- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -------------------------------------------------- F -------------------------------------------------- Oscillatoria_agardhii -------------------------------------------------- Pleurocapsa_sp. -------------------------------------------------- Microcystis_aeruginosa -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos -------------------------------------------------- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Bacillus_anthracis -------------------------------------------------- Bacillus_cereus -------------------------------------------------- Enterococcus_faecalis -------------------------------------------------- Enterococcus_faecium -------------------------------------------------- Listeria_monocytogenes -------------------------------------------------- Bacillus_subtilis -------------------------------------------------- Bacillus_subtilis_A -------------------------------------------------- Bacillus_halodurans -------------------------------------------------- Staphylococcus_aureus -------------------------------------------------- Staphylococcus_aureus_N315 -------------------------------------------------- Lactococcus_lactis_subsp._lactis -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Lactobacillus_acidophilus -------------------------------------------------- Mycoplasma_capricolum -------------------------------------------------- Mycoplasma_mycoides -------------------------------------------------- Erysipelothrix_rhusiopathiae_(alpha-P15) -------------------------------------------------- Clostridium_innocuum -------------------------------------------------- Mycoplasma_genitalium -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_gallisepticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Mycoplasma_hyopneumoniae -------------------------------------------------- Fusobacterium_necrophorum -------------------------------------------------- Fusobacterium_nucleatum_subsp._nucleatum -------------------------------------------------- Streptobacillus_moniliformis -------------------------------------------------- Clostridium_botulinum_type_f -------------------------------------------------- Clostridium_tetani -------------------------------------------------- Clostridium_perfringens -------------------------------------------------- Clostridium_difficile -------------------------------------------------- Eubacterium_brachy -------------------------------------------------- Epulopiscium_sp. -------------------------------------------------- Heliobacterium_chlorum -------------------------------------------------- Glycine_max -------------------------------------------------- Oenothera_berteroana -------------------------------------------------- Secale_cereale -------------------------------------------------- Triticum_aestivum -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Gluconacetobacter_liquefaciens -------------------------------------------------- Bradyrhizobium_japonicum -------------------------------------------------- Rhodoblastus_acidophilus -------------------------------------------------- Azorhizobium_caulinodans -------------------------------------------------- Bartonella_quintana -------------------------------------------------- Mesorhizobium_loti -------------------------------------------------- Agrobacterium_tumefaciens -------------------------------------------------- Bartonella_bacilliformis -------------------------------------------------- Bartonella_henselae -------------------------------------------------- Brucella_melitensis -------------------------------------------------- Rhodobium_orientis -------------------------------------------------- F -------------------------------------------------- Rickettsia_bellii -------------------------------------------------- Rickettsia_felis_URRWXCal2 -------------------------------------------------- Rickettsia_prowazekii -------------------------------------------------- Rickettsia_prowazekii_(str._Madrid_E) -------------------------------------------------- Rickettsia_rickettsii -------------------------------------------------- Acinetobacter_calcoaceticus -------------------------------------------------- Psychrobacter_pacificensis -------------------------------------------------- Chromohalobacter_marismortui -------------------------------------------------- F -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_sp. -------------------------------------------------- Pseudomonas_putida -------------------------------------------------- Coxiella_burnetii -------------------------------------------------- Methylococcus_capsulatus -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Allochromatium_vinosum -------------------------------------------------- Beggiatoa_sp._1401-13 -------------------------------------------------- Aeromonas_hydrophila -------------------------------------------------- Shewanella_putrefaciens -------------------------------------------------- Citrobacter_freundii -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Klebsiella_pneumoniae -------------------------------------------------- Plesiomonas_shigelloides -------------------------------------------------- Yersinia_pestis -------------------------------------------------- F -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Escherichia_coli_O157:H7 -------------------------------------------------- Escherichia_coli_O157:H7_EDL933 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli_K12 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Salmonella_typhimurium -------------------------------------------------- Serratia_marcescens -------------------------------------------------- Edwardsiella_tarda -------------------------------------------------- Proteus_vulgaris -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- F -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae_(operons_A-F) -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Xanthomonas_albilineans -------------------------------------------------- Xanthomonas_campestris -------------------------------------------------- Xylella_fastidiosa -------------------------------------------------- Dichelobacter_nodosus -------------------------------------------------- Francisella_tularensis -------------------------------------------------- Bordetella_parapertussis -------------------------------------------------- Bordetella_pertussis -------------------------------------------------- Bordetella_bronchiseptica -------------------------------------------------- unidentified_proteobacterium -------------------------------------------------- Burkholderia_mallei -------------------------------------------------- Burkholderia_sp. -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -------------------------------------------------- Comamonas_testosteroni -------------------------------------------------- Desulfovibrio_desulfuricans -------------------------------------------------- Myxococcus_xanthus -------------------------------------------------- Deferribacter_thermophilus -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_hermsii -------------------------------------------------- Spirochaeta_aurantia -------------------------------------------------- Treponema_pallidum_(rRNA_A) -------------------------------------------------- Leptonema_illini -------------------------------------------------- Leptospira_interrogans -------------------------------------------------- Chlamydia_trachomatis_D/UW-3/CX -------------------------------------------------- Chlamydia_trachomatis_L2/434/BU -------------------------------------------------- Chlamydia_muridarum -------------------------------------------------- Chlamydophila_pneumoniae_AR39 -------------------------------------------------- Chlamydophila_pneumoniae -------------------------------------------------- Chlamydophila_pneumoniae_J138 -------------------------------------------------- F -------------------------------------------------- Chlamydophila_psittaci -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- Porphyromonas_gingivalis -------------------------------------------------- Prosthecochloris_vibrioformis -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_sputorum ACAACACUUAG--------------------------------------- F -------------------------------------------------- Helicobacter_pylori_J99 -------------------------------------------------- Helicobacter_pylori -------------------------------------------------- Acidobacterium_capsulatum -------------------------------------------------- Holophaga_foetida -------------------------------------------------- Arthrobacter_globiformis -------------------------------------------------- Micrococcus_luteus -------------------------------------------------- Frankia_sp. -------------------------------------------------- Streptomyces_bottropensis -------------------------------------------------- Streptomyces_scabiei -------------------------------------------------- Streptomyces_neyagawaensis -------------------------------------------------- F -------------------------------------------------- Streptomyces_sp. -------------------------------------------------- Streptomyces_acidiscabies -------------------------------------------------- Streptomyces_griseus -------------------------------------------------- Streptomyces_ornatus -------------------------------------------------- Streptomyces_subrutilus -------------------------------------------------- Streptomyces_bikiniensis -------------------------------------------------- Streptomyces_galbus -------------------------------------------------- Streptomyces_hygroscopicus -------------------------------------------------- Streptomyces_lincolnensis -------------------------------------------------- Streptomyces_coelicolor -------------------------------------------------- Streptomyces_tendae -------------------------------------------------- Streptomyces_ambofaciens -------------------------------------------------- Streptomyces_eurythermus -------------------------------------------------- Streptomyces_nodosus -------------------------------------------------- Streptomyces_sampsonii -------------------------------------------------- Streptomyces_glaucescens -------------------------------------------------- Streptomyces_pseudogriseolus -------------------------------------------------- Streptomyces_caelestis -------------------------------------------------- Streptomyces_bluensis -------------------------------------------------- Streptomyces_espinosus -------------------------------------------------- Streptomyces_mashuensis -------------------------------------------------- Streptomyces_rimosus -------------------------------------------------- Streptomyces_limosus -------------------------------------------------- Streptomyces_odorifer -------------------------------------------------- Streptomyces_felleus -------------------------------------------------- Streptomyces_albidoflavus -------------------------------------------------- Streptomyces_gougerotii -------------------------------------------------- Streptomyces_rutgersensis -------------------------------------------------- Streptomyces_intermedius -------------------------------------------------- F -------------------------------------------------- Streptomyces_thermoviolaceus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus -------------------------------------------------- Streptomyces_megasporus -------------------------------------------------- Streptomyces_thermolineatus -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_avium -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides -------------------------------------------------- Rhodococcus_erythropolis -------------------------------------------------- Corynebacterium_diphtheriae -------------------------------------------------- Actinomyces_israelii -------------------------------------------------- Brachyspira_hyodysenteriae -------------------------------------------------- Geotoga_subterranea -------------------------------------------------- Petrotoga_miotherma -------------------------------------------------- Brevinema_andersonii -------------------------------------------------- Herpetosiphon_aurantiacus -------------------------------------------------- F -------------------------------------------------- Aquifex_aeolicus -------------------------------------------------- Aquifex_pyrophilus -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- Thermus_aquaticus -------------------------------------------------- Thermomicrobium_roseum -------------------------------------------------- Pirellula_marina -------------------------------------------------- Pirellula_staleyi -------------------------------------------------- Planctomycetaceae_Schlesner_670 -------------------------------------------------- Gemmata_obscuriglobus -------------------------------------------------- Isosphaera_pallida -------------------------------------------------- Pyrococcus_abyssi -------------------------------------------------- Pyrococcus_horikoshii -------------------------------------------------- Pyrococcus_furiosus -------------------------------------------------- Thermococcus_celer -------------------------------------------------- Archaeoglobus_fulgidus -------------------------------------------------- Nanoarchaeum_equitans -------------------------------------------------- Aeropyrum_pernix_(str._K1) -------------------------------------------------- Pyrodictium_occultum -------------------------------------------------- Thermoproteus_tenax -------------------------------------------------- Sulfolobus_acidocaldarius -------------------------------------------------- Sulfolobus_solfataricus -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum -------------------------------------------------- Methanococcus_vannielii -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -------------------------------------------------- Natronorubrum_bangense -------------------------------------------------- Natronobacterium_innermongoliae -------------------------------------------------- Haloferax_volcanii -------------------------------------------------- Methanospirillum_hungatei -------------------------------------------------- Picrophilus_torridus_DSM_9790 -------------------------------------------------- Thermoplasma_acidophilum -------------------------------------------------- Giardia_ardeae -------------------------------------------------- Giardia_intestinalis -------------------------------------------------- Giardia_muris -------------------------------------------------- Amblyospora_bracteata -------------------------------------------------- Glomus_sp._W3349 AACCGUGGUAAUUCUAGAG------------------------------- Scutellospora_cerradensis -------------------------------------------------- Glomus_intraradices -------------------------------------------------- Smittium_culisetae GAUAACCGUGGUAAUUCUAGAGC--------------------------- Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus -------------------------------------------------- Tilletia_caries -------------------------------------------------- Mucor_circinelloides_f._lusitanicus -------------------------------------------------- Mucor_racemosus -------------------------------------------------- Rhizopus_oryzae -------------------------------------------------- Mytilus_edulis ACUGUGGUAAUUCU------------------------------------ Placopecten_magellanicus -------------------------------------------------- Echinococcus_granulosus -------------------------------------------------- Drosophila_melanogaster CUGUGGUAAUUCUAGAGCUAAUACAUGCAAUUAAAACAUGAACCUUAUGG Crossodonthina_koreana CUGUGG-------------------------------------------- Androctonus_australis CUGUGG-------------------------------------------- Okanagana_utahensis UGGUAAUUCUAGAGCUAAUACAUGCAAACAAGUCCCGACCAGAGAUGGAA Artemia_salina ACUGUGG------------------------------------------- Mus_musculus GAUAACUGUGGUAAUUCUAGAGCUAAUACAUGCCGACGGGCGCUGACCCC Rattus_norvegicus GAUAACUGUGGUAAUUCUAGAGCUAAUACAUGCCGACGGGCGCUGACCCC Homo_sapiens GAUAACUGUGGUAAUUCUAGAGCUAAUACAUGCCGACGGGCGCUGACCC- Oryctolagus_cuniculus GAUAACUGUGGUAAUUCUAGAGCUAAUA---------------------- Xenopus_borealis AACU---------------------------------------------- Xenopus_laevis AACU---------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Balamuthia_mandrillaris -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Entamoeba_histolytica -------------------------------------------------- Ichthyophonus_hoferi -------------------------------------------------- Dermocystidium_sp. -------------------------------------------------- Sphaerothecum_destruens -------------------------------------------------- Acanthocoepsis_unguiculata -------------------------------------------------- Diaphanoeca_grandis -------------------------------------------------- Allomyces_macrogynus -------------------------------------------------- Blastocladiella_emersonii -------------------------------------------------- Candida_albicans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Coccidioides_immitis -------------------------------------------------- Leishmania_major -------------------------------------------------- Trypanosoma_cruzi -------------------------------------------------- Trypanosoma_brucei -------------------------------------------------- Pneumocystis_carinii -------------------------------------------------- Cryptococcus_neoformans_var._neoformans -------------------------------------------------- fungal_contaminant_of_QPX_isolate -------------------------------------------------- Ustilago_maydis -------------------------------------------------- Mnemiopsis_leidyi -------------------------------------------------- Tripedalia_cystophora -------------------------------------------------- Microciona_prolifera -------------------------------------------------- Psorospermium_haeckeli -------------------------------------------------- Euglypha_rotunda -------------------------------------------------- Paulinella_chromatophora -------------------------------------------------- Antirrhinum_majus -------------------------------------------------- Sesamum_indicum -------------------------------------------------- Digitalis_grandiflora -------------------------------------------------- Plantago_lanceolata -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Arabidopsis_thaliana -------------------------------------------------- Sinapis_alba -------------------------------------------------- Solanum_tuberosum -------------------------------------------------- Fragaria_x_ananassa -------------------------------------------------- Glycine_max -------------------------------------------------- Oryza_sativa -------------------------------------------------- Zea_mays -------------------------------------------------- F -------------------------------------------------- Genicularia_spirotaenia -------------------------------------------------- F -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- FChlorella'_luteoviridis -------------------------------------------------- Oxytricha_longa -------------------------------------------------- Paraurostyla_weissei -------------------------------------------------- Cyrtohymena_citrina -------------------------------------------------- Gastrostyla_steinii -------------------------------------------------- Pleurotricha_lanceolota -------------------------------------------------- Onychodromus_quadricornutus -------------------------------------------------- Stylonychia_lemnae -------------------------------------------------- Stylonychia_mytilus -------------------------------------------------- Engelmanniella_mobilis -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Uroleptus_gallina -------------------------------------------------- Uroleptus_pisces -------------------------------------------------- Paruroleptus_lepisma -------------------------------------------------- Urostyla_grandis -------------------------------------------------- Balantidium_coli -------------------------------------------------- Euplotes_aediculatus -------------------------------------------------- Tetrahymena_thermophila -------------------------------------------------- Bangia_sp._(Northwest_Territories/NWT) -------------------------------------------------- Bangia_sp._(Virgin_Islands/VIS7) -------------------------------------------------- Erythrotrichia_carnea -------------------------------------------------- Rhodochaete_parvula -------------------------------------------------- Compsopogon_coeruleus -------------------------------------------------- Porphyridium_aerugineum -------------------------------------------------- Rhodella_maculata -------------------------------------------------- Aulacoseira_ambigua -------------------------------------------------- Aulacoseira_baicalensis -------------------------------------------------- Stephanopyxis_nipponica -------------------------------------------------- Coscinodiscus_radiatus -------------------------------------------------- Corethron_criophilum -------------------------------------------------- Amphora_cf._capitellata -------------------------------------------------- Sellaphora_pupula_f._capitata -------------------------------------------------- Thalassiosira_antarctica -------------------------------------------------- Encyonema_triangulatum -------------------------------------------------- Achnanthes_bongranii -------------------------------------------------- F -------------------------------------------------- Diatoma_tenue -------------------------------------------------- Grammatophora_marina -------------------------------------------------- Thalassionema_sp._p474 -------------------------------------------------- Rhaphoneis_belgicae -------------------------------------------------- Undatella_sp._p446 -------------------------------------------------- Cymatosira_belgica -------------------------------------------------- Odontella_sinensis -------------------------------------------------- Ditylum_brightwellii -------------------------------------------------- Lithodesmium_undulatum -------------------------------------------------- Thalassiosira_eccentrica -------------------------------------------------- Thalassiosira_pseudonana -------------------------------------------------- Skeletonema_costatum -------------------------------------------------- Pleurosira_cf._laevis -------------------------------------------------- Lauderia_borealis -------------------------------------------------- F -------------------------------------------------- Bolidomonas_mediterranea -------------------------------------------------- Bolidomonas_pacifica -------------------------------------------------- Labyrinthuloides_minuta -------------------------------------------------- Leptocylindrus_danicus -------------------------------------------------- Chaetoceros_sp. -------------------------------------------------- Aphanomyces_invadans -------------------------------------------------- Lagenidium_giganteum -------------------------------------------------- Melosira_varians -------------------------------------------------- Blastocystis_hominis -------------------------------------------------- Perkinsus_marinus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Alexandrium_fundyense -------------------------------------------------- Babesia_bigemina -------------------------------------------------- Babesia_canis -------------------------------------------------- Babesia_sp._'Oklahoma_dog' -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_rodhaini -------------------------------------------------- Babesia_gibsoni -------------------------------------------------- Babesia_bovis -------------------------------------------------- Jakoba_libera -------------------------------------------------- Reclinomonas_americana -------------------------------------------------- Bonamia_ostreae -------------------------------------------------- Audouinella_dasyae -------------------------------------------------- Audouinella_hermannii -------------------------------------------------- Nemalion_helminthoides -------------------------------------------------- Batrachospermum_gelatinosum -------------------------------------------------- Nemalionopsis_tortuosa -------------------------------------------------- Thorea_hispida -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Nemalionopsis_shawii -------------------------------------------------- Balbiania_investiens -------------------------------------------------- Batrachospermum_macrosporum -------------------------------------------------- Ahnfeltia_plicata -------------------------------------------------- Corallina_officinalis -------------------------------------------------- Rhodogorgon_carriebowensis -------------------------------------------------- Bonnemaisonia_hamifera -------------------------------------------------- Gelidium_vagum -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Halymenia_plana -------------------------------------------------- Rhodymenia_leptophylla -------------------------------------------------- Plocamiocolax_pulvinata -------------------------------------------------- Ceramium_rubrum -------------------------------------------------- Gracilariopsis_sp. -------------------------------------------------- Bostrychia_moritziana -------------------------------------------------- Hildenbrandia_rubra -------------------------------------------------- Dixonielloa_grisea -------------------------------------------------- Naegleria_fowleri -------------------------------------------------- Naegleria_gruberi -------------------------------------------------- Hexamita_sp. -------------------------------------------------- Tritrichomonas_foetus -------------------------------------------------- Amblyospora_khaliulini -------------------------------------------------- Edhazardia_aedis -------------------------------------------------- Amblyospora_connecticus -------------------------------------------------- Intrapredatorus_barri -------------------------------------------------- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. -------------------------------------------------- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii -------------------------------------------------- Weiseria_palustris -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani -------------------------------------------------- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae -------------------------------------------------- Thelohania_solenopsae -------------------------------------------------- Visvesvaria_acridophagus -------------------------------------------------- Bacillidium_sp. -------------------------------------------------- Pseudonosema_cristatellae -------------------------------------------------- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum -------------------------------------------------- Pleistophora_mirandellae -------------------------------------------------- Trachipleistophora_hominis -------------------------------------------------- Vavraia_culicis -------------------------------------------------- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii -------------------------------------------------- F -------------------------------------------------- Dictyocoela_gammarellum -------------------------------------------------- Microsporidium_prosopium -------------------------------------------------- Antonospora_scoticae -------------------------------------------------- Paranosema_whitei -------------------------------------------------- #=GC SS_cons .................................................. Cynomorium_coccineum -------------------------------------------------- Cytinus_ruber -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Spinacia_oleracea -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Ricinus_communis -------------------------------------------------- F -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Pyramimonas_parkeae -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Pilostyles_thurberi -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Penicillium_chrysogenum -------------------------------------------------- Emericella_nidulans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Williopsis_saturnus_var._mrakii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Babesia_bovis -------------------------------------------------- Tetrahymena_pyriformis ----------------------------UU-------------------- Suillus_sinuspaulianus ----------------------------GAAUUUAAUUUUGGUUCCGAUU Paramecium_tetraurelia ----------------------------CAGCCAUGCUGCAU-------- Dictyostelium_discoideum -------------------------------------------------- Physarum_polycephalum ----------------------------GA-------------------- Pylaiella_littoralis -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Hydnora_africana -------------------------------------------------- Codium_fragile -------------------------------------------------- Caulerpa_sertularioides -------------------------------------------------- F ----------------------------UG-------------------- F ----------------------------GC-------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cryptomonas_sp. -------------------------------------------------- Palmaria_palmata -------------------------------------------------- Heterosigma_akashiwo ----------------------------UU-------------------- Skeletonema_pseudocostatum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Cyanidium_caldarium -------------------------------------------------- Emiliania_huxleyi -------------------------------------------------- Euglena_gracilis -------------------------------------------------- Anabaena_sp. -------------------------------------------------- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -------------------------------------------------- F -------------------------------------------------- Oscillatoria_agardhii ----------------------------UG-------------------- Pleurocapsa_sp. ----------------------------UG-------------------- Microcystis_aeruginosa ----------------------------UG-------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos ----------------------------AA-------------------- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae ----------------------------UG-------------------- Streptococcus_pyogenes ----------------------------UG-------------------- Bacillus_anthracis -------------------------------------------------- Bacillus_cereus -------------------------------------------------- Enterococcus_faecalis -------------------------------------------------- Enterococcus_faecium ----------------------------UG-------------------- Listeria_monocytogenes -------------------------------------------------- Bacillus_subtilis -------------------------------------------------- Bacillus_subtilis_A -------------------------------------------------- Bacillus_halodurans -------------------------------------------------- Staphylococcus_aureus -------------------------------------------------- Staphylococcus_aureus_N315 -------------------------------------------------- Lactococcus_lactis_subsp._lactis -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Lactobacillus_acidophilus -------------------------------------------------- Mycoplasma_capricolum -------------------------------------------------- Mycoplasma_mycoides -------------------------------------------------- Erysipelothrix_rhusiopathiae_(alpha-P15) -------------------------------------------------- Clostridium_innocuum -------------------------------------------------- Mycoplasma_genitalium -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_gallisepticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Mycoplasma_hyopneumoniae -------------------------------------------------- Fusobacterium_necrophorum -------------------------------------------------- Fusobacterium_nucleatum_subsp._nucleatum -------------------------------------------------- Streptobacillus_moniliformis -------------------------------------------------- Clostridium_botulinum_type_f -------------------------------------------------- Clostridium_tetani -------------------------------------------------- Clostridium_perfringens -------------------------------------------------- Clostridium_difficile -------------------------------------------------- Eubacterium_brachy -------------------------------------------------- Epulopiscium_sp. ----------------------------UG-------------------- Heliobacterium_chlorum -------------------------------------------------- Glycine_max ----------------------------UC-------------------- Oenothera_berteroana ----------------------------UC-------------------- Secale_cereale ----------------------------UC-------------------- Triticum_aestivum ----------------------------UC-------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha ----------------------------CA-------------------- Nephroselmis_olivacea -------------------------------------------------- Gluconacetobacter_liquefaciens -------------------------------------------------- Bradyrhizobium_japonicum -------------------------------------------------- Rhodoblastus_acidophilus -------------------------------------------------- Azorhizobium_caulinodans -------------------------------------------------- Bartonella_quintana -------------------------------------------------- Mesorhizobium_loti -------------------------------------------------- Agrobacterium_tumefaciens -------------------------------------------------- Bartonella_bacilliformis ----------------------------UG-------------------- Bartonella_henselae ----------------------------UG-------------------- Brucella_melitensis ----------------------------UG-------------------- Rhodobium_orientis ----------------------------UG-------------------- F -------------------------------------------------- Rickettsia_bellii -------------------------------------------------- Rickettsia_felis_URRWXCal2 ----------------------------CA-------------------- Rickettsia_prowazekii -------------------------------------------------- Rickettsia_prowazekii_(str._Madrid_E) -------------------------------------------------- Rickettsia_rickettsii -------------------------------------------------- Acinetobacter_calcoaceticus -------------------------------------------------- Psychrobacter_pacificensis -------------------------------------------------- Chromohalobacter_marismortui ----------------------------UG-------------------- F -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_sp. -------------------------------------------------- Pseudomonas_putida -------------------------------------------------- Coxiella_burnetii -------------------------------------------------- Methylococcus_capsulatus -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Legionella_pneumophila ----------------------------UG-------------------- Allochromatium_vinosum -------------------------------------------------- Beggiatoa_sp._1401-13 -------------------------------------------------- Aeromonas_hydrophila -------------------------------------------------- Shewanella_putrefaciens -------------------------------------------------- Citrobacter_freundii -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Klebsiella_pneumoniae -------------------------------------------------- Plesiomonas_shigelloides -------------------------------------------------- Yersinia_pestis -------------------------------------------------- F -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Escherichia_coli_O157:H7 -------------------------------------------------- Escherichia_coli_O157:H7_EDL933 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli_K12 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Salmonella_typhimurium -------------------------------------------------- Serratia_marcescens -------------------------------------------------- Edwardsiella_tarda ----------------------------UG-------------------- Proteus_vulgaris -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- F -------------------------------------------------- Haemophilus_influenzae ----------------------------UG-------------------- Haemophilus_influenzae ----------------------------UG-------------------- Haemophilus_influenzae ----------------------------UG-------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae_(operons_A-F) -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Xanthomonas_albilineans ----------------------------UG-------------------- Xanthomonas_campestris ----------------------------UG-------------------- Xylella_fastidiosa -------------------------------------------------- Dichelobacter_nodosus -------------------------------------------------- Francisella_tularensis -------------------------------------------------- Bordetella_parapertussis -------------------------------------------------- Bordetella_pertussis -------------------------------------------------- Bordetella_bronchiseptica -------------------------------------------------- unidentified_proteobacterium ----------------------------UG-------------------- Burkholderia_mallei ----------------------------UG-------------------- Burkholderia_sp. -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -------------------------------------------------- Comamonas_testosteroni -------------------------------------------------- Desulfovibrio_desulfuricans -------------------------------------------------- Myxococcus_xanthus -------------------------------------------------- Deferribacter_thermophilus -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_hermsii -------------------------------------------------- Spirochaeta_aurantia ----------------------------GG-------------------- Treponema_pallidum_(rRNA_A) -------------------------------------------------- Leptonema_illini ----------------------------UA-------------------- Leptospira_interrogans -------------------------------------------------- Chlamydia_trachomatis_D/UW-3/CX -------------------------------------------------- Chlamydia_trachomatis_L2/434/BU -------------------------------------------------- Chlamydia_muridarum -------------------------------------------------- Chlamydophila_pneumoniae_AR39 -------------------------------------------------- Chlamydophila_pneumoniae -------------------------------------------------- Chlamydophila_pneumoniae_J138 -------------------------------------------------- F -------------------------------------------------- Chlamydophila_psittaci -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Bacteroides_fragilis -----------------------------A-------------------- Porphyromonas_gingivalis -------------------------------------------------- Prosthecochloris_vibrioformis -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_sputorum ----------------------------AA-------------------- F -------------------------------------------------- Helicobacter_pylori_J99 -------------------------------------------------- Helicobacter_pylori -------------------------------------------------- Acidobacterium_capsulatum ----------------------------UG-------------------- Holophaga_foetida -------------------------------------------------- Arthrobacter_globiformis -------------------------------------------------- Micrococcus_luteus -------------------------------------------------- Frankia_sp. -------------------------------------------------- Streptomyces_bottropensis -------------------------------------------------- Streptomyces_scabiei -------------------------------------------------- Streptomyces_neyagawaensis -------------------------------------------------- F -------------------------------------------------- Streptomyces_sp. -------------------------------------------------- Streptomyces_acidiscabies -------------------------------------------------- Streptomyces_griseus -------------------------------------------------- Streptomyces_ornatus -------------------------------------------------- Streptomyces_subrutilus -------------------------------------------------- Streptomyces_bikiniensis -------------------------------------------------- Streptomyces_galbus -------------------------------------------------- Streptomyces_hygroscopicus -------------------------------------------------- Streptomyces_lincolnensis -------------------------------------------------- Streptomyces_coelicolor -------------------------------------------------- Streptomyces_tendae -------------------------------------------------- Streptomyces_ambofaciens -------------------------------------------------- Streptomyces_eurythermus -------------------------------------------------- Streptomyces_nodosus -------------------------------------------------- Streptomyces_sampsonii -------------------------------------------------- Streptomyces_glaucescens -------------------------------------------------- Streptomyces_pseudogriseolus -------------------------------------------------- Streptomyces_caelestis -------------------------------------------------- Streptomyces_bluensis -------------------------------------------------- Streptomyces_espinosus -------------------------------------------------- Streptomyces_mashuensis -------------------------------------------------- Streptomyces_rimosus -------------------------------------------------- Streptomyces_limosus -------------------------------------------------- Streptomyces_odorifer -------------------------------------------------- Streptomyces_felleus -------------------------------------------------- Streptomyces_albidoflavus -------------------------------------------------- Streptomyces_gougerotii -------------------------------------------------- Streptomyces_rutgersensis -------------------------------------------------- Streptomyces_intermedius -------------------------------------------------- F -------------------------------------------------- Streptomyces_thermoviolaceus ----------------------------UG-------------------- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus ----------------------------UG-------------------- Streptomyces_megasporus ----------------------------UG-------------------- Streptomyces_thermolineatus ----------------------------UG-------------------- Mycobacterium_tuberculosis ----------------------------UG-------------------- Mycobacterium_tuberculosis ----------------------------UG-------------------- Mycobacterium_avium ----------------------------UG-------------------- Mycobacterium_leprae -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides ----------------------------UG-------------------- Rhodococcus_erythropolis -------------------------------------------------- Corynebacterium_diphtheriae ----------------------------UG-------------------- Actinomyces_israelii ----------------------------UG-------------------- Brachyspira_hyodysenteriae -------------------------------------------------- Geotoga_subterranea -------------------------------------------------- Petrotoga_miotherma -------------------------------------------------- Brevinema_andersonii -------------------------------------------------- Herpetosiphon_aurantiacus -------------------------------------------------- F -------------------------------------------------- Aquifex_aeolicus -------------------------------------------------- Aquifex_pyrophilus -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- Thermus_aquaticus ----------------------------UG-------------------- Thermomicrobium_roseum -------------------------------------------------- Pirellula_marina -------------------------------------------------- Pirellula_staleyi -------------------------------------------------- Planctomycetaceae_Schlesner_670 -------------------------------------------------- Gemmata_obscuriglobus ----------------------------UG-------------------- Isosphaera_pallida -------------------------------------------------- Pyrococcus_abyssi ----------------------------CG-------------------- Pyrococcus_horikoshii -------------------------------------------------- Pyrococcus_furiosus -------------------------------------------------- Thermococcus_celer -------------------------------------------------- Archaeoglobus_fulgidus -------------------------------------------------- Nanoarchaeum_equitans -------------------------------------------------- Aeropyrum_pernix_(str._K1) -------------------------------------------------- Pyrodictium_occultum -------------------------------------------------- Thermoproteus_tenax -------------------------------------------------- Sulfolobus_acidocaldarius -------------------------------------------------- Sulfolobus_solfataricus -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum -------------------------------------------------- Methanococcus_vannielii -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -------------------------------------------------- Natronorubrum_bangense -------------------------------------------------- Natronobacterium_innermongoliae -------------------------------------------------- Haloferax_volcanii -------------------------------------------------- Methanospirillum_hungatei -------------------------------------------------- Picrophilus_torridus_DSM_9790 -------------------------------------------------- Thermoplasma_acidophilum -------------------------------------------------- Giardia_ardeae -------------------------------------------------- Giardia_intestinalis -------------------------------------------------- Giardia_muris -------------------------------------------------- Amblyospora_bracteata -------------------------------------------------- Glomus_sp._W3349 ----------------------------CU-------------------- Scutellospora_cerradensis ----------------------------UA-------------------- Glomus_intraradices ----------------------------UA-------------------- Smittium_culisetae ----------------------------UA-------------------- Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus ----------------------------UA-------------------- Tilletia_caries ----------------------------GC-------------------- Mucor_circinelloides_f._lusitanicus ----------------------------UA-------------------- Mucor_racemosus ----------------------------UA-------------------- Rhizopus_oryzae ----------------------------UA-------------------- Mytilus_edulis ----------------------------AG-------------------- Placopecten_magellanicus ----------------------------AA-------------------- Echinococcus_granulosus ----------------------------GU-------------------- Drosophila_melanogaster GA--------------------------CG-------------------- Crossodonthina_koreana ----------------------------UA-------------------- Androctonus_australis ----------------------------UA-------------------- Okanagana_utahensis GGGACGCUUUUAUUAGAUCAAAACCGAUCG-------------------- Artemia_salina ----------------------------UA-------------------- Mus_musculus C---------------------------CU-------------------- Rattus_norvegicus CC--------------------------UU-------------------- Homo_sapiens ----------------------------CC-------------------- Oryctolagus_cuniculus ----------------------------CA-------------------- Xenopus_borealis ----------------------------GU-------------------- Xenopus_laevis ----------------------------GU-------------------- Acanthamoeba_castellanii ----------------------------GU-------------------- Balamuthia_mandrillaris ----------------------------AA-------------------- Plasmodium_falciparum ----------------------------UU-------------------- Plasmodium_falciparum ----------------------------UA-------------------- Plasmodium_vivax ----------------------------UG-------------------- Plasmodium_vivax ----------------------------CG-------------------- Plasmodium_vivax ----------------------------GU-------------------- Entamoeba_histolytica ----------------------------GU-------------------- Ichthyophonus_hoferi ----------------------------UA-------------------- Dermocystidium_sp. ----------------------------CU-------------------- Sphaerothecum_destruens ----------------------------UA-------------------- Acanthocoepsis_unguiculata ----------------------------UA-------------------- Diaphanoeca_grandis ----------------------------UA-------------------- Allomyces_macrogynus ----------------------------UA-------------------- Blastocladiella_emersonii ----------------------------UA-------------------- Candida_albicans ----------------------------UA-------------------- Saccharomyces_cerevisiae ----------------------------CU-------------------- Neurospora_crassa ----------------------------UA-------------------- Podospora_anserina ----------------------------UA-------------------- Coccidioides_immitis ----------------------------UA-------------------- Leishmania_major ----------------------------GA-------------------- Trypanosoma_cruzi ----------------------------GC-------------------- Trypanosoma_brucei ----------------------------AC-------------------- Pneumocystis_carinii ----------------------------UA-------------------- Cryptococcus_neoformans_var._neoformans ----------------------------UG-------------------- fungal_contaminant_of_QPX_isolate ----------------------------UG-------------------- Ustilago_maydis ----------------------------UG-------------------- Mnemiopsis_leidyi ----------------------------UA-------------------- Tripedalia_cystophora ----------------------------CU-------------------- Microciona_prolifera ----------------------------UG-------------------- Psorospermium_haeckeli ----------------------------CU-------------------- Euglypha_rotunda ----------------------------CU-------------------- Paulinella_chromatophora ----------------------------GU-------------------- Antirrhinum_majus ----------------------------CU-------------------- Sesamum_indicum ----------------------------UG-------------------- Digitalis_grandiflora ----------------------------UG-------------------- Plantago_lanceolata ----------------------------CU-------------------- Nicotiana_tabacum ----------------------------UA-------------------- Arabidopsis_thaliana ----------------------------UA-------------------- Sinapis_alba ----------------------------UA-------------------- Solanum_tuberosum ----------------------------CU-------------------- Fragaria_x_ananassa ----------------------------UA-------------------- Glycine_max ----------------------------UA-------------------- Oryza_sativa ----------------------------UG-------------------- Zea_mays ----------------------------UG-------------------- F -------------------------------------------------- Genicularia_spirotaenia ----------------------------UA-------------------- F -------------------------------------------------- Cyanophora_paradoxa ----------------------------UA-------------------- Glaucocystis_nostochinearum ----------------------------CU-------------------- Gloeochaete_wittrockiana ----------------------------UC-------------------- FChlorella'_luteoviridis ----------------------------AC-------------------- Oxytricha_longa ----------------------------AU-------------------- Paraurostyla_weissei ----------------------------AA-------------------- Cyrtohymena_citrina ----------------------------AA-------------------- Gastrostyla_steinii ----------------------------AU-------------------- Pleurotricha_lanceolota ----------------------------AU-------------------- Onychodromus_quadricornutus ----------------------------AU-------------------- Stylonychia_lemnae ----------------------------AU-------------------- Stylonychia_mytilus ----------------------------AU-------------------- Engelmanniella_mobilis ----------------------------AU-------------------- Oxytricha_granulifera ----------------------------AU-------------------- Oxytricha_granulifera ----------------------------AC-------------------- Uroleptus_gallina ----------------------------AU-------------------- Uroleptus_pisces ----------------------------AA-------------------- Paruroleptus_lepisma ----------------------------AA-------------------- Urostyla_grandis ----------------------------AU-------------------- Balantidium_coli ----------------------------UA-------------------- Euplotes_aediculatus ----------------------------CG-------------------- Tetrahymena_thermophila ----------------------------GA-------------------- Bangia_sp._(Northwest_Territories/NWT) ----------------------------CA-------------------- Bangia_sp._(Virgin_Islands/VIS7) ----------------------------UA-------------------- Erythrotrichia_carnea ----------------------------UU-------------------- Rhodochaete_parvula ----------------------------CC-------------------- Compsopogon_coeruleus ----------------------------UU-------------------- Porphyridium_aerugineum ----------------------------UU-------------------- Rhodella_maculata ----------------------------GA-------------------- Aulacoseira_ambigua ----------------------------UA-------------------- Aulacoseira_baicalensis ----------------------------UA-------------------- Stephanopyxis_nipponica ----------------------------UA-------------------- Coscinodiscus_radiatus ----------------------------UG-------------------- Corethron_criophilum ----------------------------UA-------------------- Amphora_cf._capitellata ----------------------------CA-------------------- Sellaphora_pupula_f._capitata ----------------------------UA-------------------- Thalassiosira_antarctica ----------------------------UA-------------------- Encyonema_triangulatum ----------------------------UA-------------------- Achnanthes_bongranii ----------------------------UA-------------------- F -------------------------------------------------- Diatoma_tenue ----------------------------UA-------------------- Grammatophora_marina ----------------------------UA-------------------- Thalassionema_sp._p474 ----------------------------UA-------------------- Rhaphoneis_belgicae ----------------------------UA-------------------- Undatella_sp._p446 ----------------------------UA-------------------- Cymatosira_belgica ----------------------------UA-------------------- Odontella_sinensis ----------------------------UA-------------------- Ditylum_brightwellii ----------------------------UA-------------------- Lithodesmium_undulatum ----------------------------UA-------------------- Thalassiosira_eccentrica ----------------------------UA-------------------- Thalassiosira_pseudonana ----------------------------UA-------------------- Skeletonema_costatum ----------------------------CA-------------------- Pleurosira_cf._laevis ----------------------------UA-------------------- Lauderia_borealis ----------------------------UA-------------------- F -------------------------------------------------- Bolidomonas_mediterranea ----------------------------UA-------------------- Bolidomonas_pacifica ----------------------------UA-------------------- Labyrinthuloides_minuta ----------------------------UA-------------------- Leptocylindrus_danicus ----------------------------UG-------------------- Chaetoceros_sp. ----------------------------UA-------------------- Aphanomyces_invadans ----------------------------UA-------------------- Lagenidium_giganteum ----------------------------UA-------------------- Melosira_varians ----------------------------UA-------------------- Blastocystis_hominis ----------------------------UA-------------------- Perkinsus_marinus ----------------------------UA-------------------- Toxoplasma_gondii ----------------------------UA-------------------- Alexandrium_fundyense ----------------------------UU-------------------- Babesia_bigemina ----------------------------UC-------------------- Babesia_canis ----------------------------UG-------------------- Babesia_sp._'Oklahoma_dog' ----------------------------CA-------------------- Babesia_microti ----------------------------UU-------------------- Babesia_microti ----------------------------UU-------------------- Babesia_microti ----------------------------UU-------------------- Babesia_microti ----------------------------UU-------------------- Babesia_microti ----------------------------UU-------------------- Babesia_rodhaini ----------------------------UA-------------------- Babesia_gibsoni ----------------------------UU-------------------- Babesia_bovis ----------------------------AU-------------------- Jakoba_libera ----------------------------UC-------------------- Reclinomonas_americana ----------------------------CU-------------------- Bonamia_ostreae ----------------------------UU-------------------- Audouinella_dasyae ----------------------------UA-------------------- Audouinella_hermannii ----------------------------UA-------------------- Nemalion_helminthoides ----------------------------UA-------------------- Batrachospermum_gelatinosum ----------------------------UA-------------------- Nemalionopsis_tortuosa ----------------------------UA-------------------- Thorea_hispida ----------------------------UA-------------------- Thorea_violacea ----------------------------UA-------------------- Thorea_violacea ----------------------------UG-------------------- Thorea_violacea ----------------------------UG-------------------- Nemalionopsis_shawii ----------------------------UA-------------------- Balbiania_investiens ----------------------------UA-------------------- Batrachospermum_macrosporum ----------------------------UA-------------------- Ahnfeltia_plicata ----------------------------UA-------------------- Corallina_officinalis ----------------------------UA-------------------- Rhodogorgon_carriebowensis ----------------------------AU-------------------- Bonnemaisonia_hamifera ----------------------------AU-------------------- Gelidium_vagum ----------------------------UG-------------------- Chondrus_crispus ----------------------------UA-------------------- Halymenia_plana ----------------------------UG-------------------- Rhodymenia_leptophylla ----------------------------UA-------------------- Plocamiocolax_pulvinata ----------------------------CA-------------------- Ceramium_rubrum ----------------------------UA-------------------- Gracilariopsis_sp. ----------------------------UA-------------------- Bostrychia_moritziana ----------------------------CU-------------------- Hildenbrandia_rubra ----------------------------AU-------------------- Dixonielloa_grisea ----------------------------GU-------------------- Naegleria_fowleri ----------------------------CG-------------------- Naegleria_gruberi ----------------------------CG-------------------- Hexamita_sp. ----------------------------GC-------------------- Tritrichomonas_foetus ----------------------------CG-------------------- Amblyospora_khaliulini -------------------------------------------------- Edhazardia_aedis -------------------------------------------------- Amblyospora_connecticus -------------------------------------------------- Intrapredatorus_barri -------------------------------------------------- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. -------------------------------------------------- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii -------------------------------------------------- Weiseria_palustris -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani -------------------------------------------------- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae -------------------------------------------------- Thelohania_solenopsae -------------------------------------------------- Visvesvaria_acridophagus -------------------------------------------------- Bacillidium_sp. -------------------------------------------------- Pseudonosema_cristatellae -------------------------------------------------- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum -------------------------------------------------- Pleistophora_mirandellae -------------------------------------------------- Trachipleistophora_hominis -------------------------------------------------- Vavraia_culicis -------------------------------------------------- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii -------------------------------------------------- F -------------------------------------------------- Dictyocoela_gammarellum -------------------------------------------------- Microsporidium_prosopium -------------------------------------------------- Antonospora_scoticae -------------------------------------------------- Paranosema_whitei -------------------------------------------------- #=GC SS_cons .................................................. Cynomorium_coccineum -------------------------------------------------- Cytinus_ruber -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Spinacia_oleracea -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Ricinus_communis -------------------------------------------------- F -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Pyramimonas_parkeae -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Pilostyles_thurberi -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Penicillium_chrysogenum -------------------------------------------------- Emericella_nidulans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Williopsis_saturnus_var._mrakii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Babesia_bovis -------------------------------------------------- Tetrahymena_pyriformis -------------------------------------------------- Suillus_sinuspaulianus GAACGUUUUUCAGUAGUUUUAAGACAUGCAAAUCGUUAUUUCUGAAAGUA Paramecium_tetraurelia -------------------------------------------------- Dictyostelium_discoideum -------------------------------------------------- Physarum_polycephalum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Hydnora_africana -------------------------------------------------- Codium_fragile -------------------------------------------------- Caulerpa_sertularioides -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cryptomonas_sp. -------------------------------------------------- Palmaria_palmata -------------------------------------------------- Heterosigma_akashiwo -------------------------------------------------- Skeletonema_pseudocostatum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Cyanidium_caldarium -------------------------------------------------- Emiliania_huxleyi -------------------------------------------------- Euglena_gracilis -------------------------------------------------- Anabaena_sp. -------------------------------------------------- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -------------------------------------------------- F -------------------------------------------------- Oscillatoria_agardhii -------------------------------------------------- Pleurocapsa_sp. -------------------------------------------------- Microcystis_aeruginosa -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos -------------------------------------------------- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Bacillus_anthracis -------------------------------------------------- Bacillus_cereus -------------------------------------------------- Enterococcus_faecalis -------------------------------------------------- Enterococcus_faecium -------------------------------------------------- Listeria_monocytogenes -------------------------------------------------- Bacillus_subtilis -------------------------------------------------- Bacillus_subtilis_A -------------------------------------------------- Bacillus_halodurans -------------------------------------------------- Staphylococcus_aureus -------------------------------------------------- Staphylococcus_aureus_N315 -------------------------------------------------- Lactococcus_lactis_subsp._lactis -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Lactobacillus_acidophilus -------------------------------------------------- Mycoplasma_capricolum -------------------------------------------------- Mycoplasma_mycoides -------------------------------------------------- Erysipelothrix_rhusiopathiae_(alpha-P15) -------------------------------------------------- Clostridium_innocuum -------------------------------------------------- Mycoplasma_genitalium -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_gallisepticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Mycoplasma_hyopneumoniae -------------------------------------------------- Fusobacterium_necrophorum -------------------------------------------------- Fusobacterium_nucleatum_subsp._nucleatum -------------------------------------------------- Streptobacillus_moniliformis -------------------------------------------------- Clostridium_botulinum_type_f -------------------------------------------------- Clostridium_tetani -------------------------------------------------- Clostridium_perfringens -------------------------------------------------- Clostridium_difficile -------------------------------------------------- Eubacterium_brachy -------------------------------------------------- Epulopiscium_sp. -------------------------------------------------- Heliobacterium_chlorum -------------------------------------------------- Glycine_max -------------------------------------------------- Oenothera_berteroana -------------------------------------------------- Secale_cereale -------------------------------------------------- Triticum_aestivum -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Gluconacetobacter_liquefaciens -------------------------------------------------- Bradyrhizobium_japonicum -------------------------------------------------- Rhodoblastus_acidophilus -------------------------------------------------- Azorhizobium_caulinodans -------------------------------------------------- Bartonella_quintana -------------------------------------------------- Mesorhizobium_loti -------------------------------------------------- Agrobacterium_tumefaciens -------------------------------------------------- Bartonella_bacilliformis -------------------------------------------------- Bartonella_henselae -------------------------------------------------- Brucella_melitensis -------------------------------------------------- Rhodobium_orientis -------------------------------------------------- F -------------------------------------------------- Rickettsia_bellii -------------------------------------------------- Rickettsia_felis_URRWXCal2 -------------------------------------------------- Rickettsia_prowazekii -------------------------------------------------- Rickettsia_prowazekii_(str._Madrid_E) -------------------------------------------------- Rickettsia_rickettsii -------------------------------------------------- Acinetobacter_calcoaceticus -------------------------------------------------- Psychrobacter_pacificensis -------------------------------------------------- Chromohalobacter_marismortui -------------------------------------------------- F -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_sp. -------------------------------------------------- Pseudomonas_putida -------------------------------------------------- Coxiella_burnetii -------------------------------------------------- Methylococcus_capsulatus -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Allochromatium_vinosum -------------------------------------------------- Beggiatoa_sp._1401-13 -------------------------------------------------- Aeromonas_hydrophila -------------------------------------------------- Shewanella_putrefaciens -------------------------------------------------- Citrobacter_freundii -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Klebsiella_pneumoniae -------------------------------------------------- Plesiomonas_shigelloides -------------------------------------------------- Yersinia_pestis -------------------------------------------------- F -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Escherichia_coli_O157:H7 -------------------------------------------------- Escherichia_coli_O157:H7_EDL933 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli_K12 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Salmonella_typhimurium -------------------------------------------------- Serratia_marcescens -------------------------------------------------- Edwardsiella_tarda -------------------------------------------------- Proteus_vulgaris -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- F -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae_(operons_A-F) -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Xanthomonas_albilineans -------------------------------------------------- Xanthomonas_campestris -------------------------------------------------- Xylella_fastidiosa -------------------------------------------------- Dichelobacter_nodosus -------------------------------------------------- Francisella_tularensis -------------------------------------------------- Bordetella_parapertussis -------------------------------------------------- Bordetella_pertussis -------------------------------------------------- Bordetella_bronchiseptica -------------------------------------------------- unidentified_proteobacterium -------------------------------------------------- Burkholderia_mallei -------------------------------------------------- Burkholderia_sp. -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -------------------------------------------------- Comamonas_testosteroni -------------------------------------------------- Desulfovibrio_desulfuricans -------------------------------------------------- Myxococcus_xanthus -------------------------------------------------- Deferribacter_thermophilus -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_hermsii -------------------------------------------------- Spirochaeta_aurantia -------------------------------------------------- Treponema_pallidum_(rRNA_A) -------------------------------------------------- Leptonema_illini -------------------------------------------------- Leptospira_interrogans -------------------------------------------------- Chlamydia_trachomatis_D/UW-3/CX -------------------------------------------------- Chlamydia_trachomatis_L2/434/BU -------------------------------------------------- Chlamydia_muridarum -------------------------------------------------- Chlamydophila_pneumoniae_AR39 -------------------------------------------------- Chlamydophila_pneumoniae -------------------------------------------------- Chlamydophila_pneumoniae_J138 -------------------------------------------------- F -------------------------------------------------- Chlamydophila_psittaci -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- Porphyromonas_gingivalis -------------------------------------------------- Prosthecochloris_vibrioformis -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_sputorum -------------------------------------------------- F -------------------------------------------------- Helicobacter_pylori_J99 -------------------------------------------------- Helicobacter_pylori -------------------------------------------------- Acidobacterium_capsulatum -------------------------------------------------- Holophaga_foetida -------------------------------------------------- Arthrobacter_globiformis -------------------------------------------------- Micrococcus_luteus -------------------------------------------------- Frankia_sp. -------------------------------------------------- Streptomyces_bottropensis -------------------------------------------------- Streptomyces_scabiei -------------------------------------------------- Streptomyces_neyagawaensis -------------------------------------------------- F -------------------------------------------------- Streptomyces_sp. -------------------------------------------------- Streptomyces_acidiscabies -------------------------------------------------- Streptomyces_griseus -------------------------------------------------- Streptomyces_ornatus -------------------------------------------------- Streptomyces_subrutilus -------------------------------------------------- Streptomyces_bikiniensis -------------------------------------------------- Streptomyces_galbus -------------------------------------------------- Streptomyces_hygroscopicus -------------------------------------------------- Streptomyces_lincolnensis -------------------------------------------------- Streptomyces_coelicolor -------------------------------------------------- Streptomyces_tendae -------------------------------------------------- Streptomyces_ambofaciens -------------------------------------------------- Streptomyces_eurythermus -------------------------------------------------- Streptomyces_nodosus -------------------------------------------------- Streptomyces_sampsonii -------------------------------------------------- Streptomyces_glaucescens -------------------------------------------------- Streptomyces_pseudogriseolus -------------------------------------------------- Streptomyces_caelestis -------------------------------------------------- Streptomyces_bluensis -------------------------------------------------- Streptomyces_espinosus -------------------------------------------------- Streptomyces_mashuensis -------------------------------------------------- Streptomyces_rimosus -------------------------------------------------- Streptomyces_limosus -------------------------------------------------- Streptomyces_odorifer -------------------------------------------------- Streptomyces_felleus -------------------------------------------------- Streptomyces_albidoflavus -------------------------------------------------- Streptomyces_gougerotii -------------------------------------------------- Streptomyces_rutgersensis -------------------------------------------------- Streptomyces_intermedius -------------------------------------------------- F -------------------------------------------------- Streptomyces_thermoviolaceus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus -------------------------------------------------- Streptomyces_megasporus -------------------------------------------------- Streptomyces_thermolineatus -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_avium -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides -------------------------------------------------- Rhodococcus_erythropolis -------------------------------------------------- Corynebacterium_diphtheriae -------------------------------------------------- Actinomyces_israelii -------------------------------------------------- Brachyspira_hyodysenteriae -------------------------------------------------- Geotoga_subterranea -------------------------------------------------- Petrotoga_miotherma -------------------------------------------------- Brevinema_andersonii -------------------------------------------------- Herpetosiphon_aurantiacus -------------------------------------------------- F -------------------------------------------------- Aquifex_aeolicus -------------------------------------------------- Aquifex_pyrophilus -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- Thermus_aquaticus -------------------------------------------------- Thermomicrobium_roseum -------------------------------------------------- Pirellula_marina -------------------------------------------------- Pirellula_staleyi -------------------------------------------------- Planctomycetaceae_Schlesner_670 -------------------------------------------------- Gemmata_obscuriglobus -------------------------------------------------- Isosphaera_pallida -------------------------------------------------- Pyrococcus_abyssi -------------------------------------------------- Pyrococcus_horikoshii -------------------------------------------------- Pyrococcus_furiosus -------------------------------------------------- Thermococcus_celer -------------------------------------------------- Archaeoglobus_fulgidus -------------------------------------------------- Nanoarchaeum_equitans -------------------------------------------------- Aeropyrum_pernix_(str._K1) -------------------------------------------------- Pyrodictium_occultum -------------------------------------------------- Thermoproteus_tenax -------------------------------------------------- Sulfolobus_acidocaldarius -------------------------------------------------- Sulfolobus_solfataricus -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum -------------------------------------------------- Methanococcus_vannielii -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -------------------------------------------------- Natronorubrum_bangense -------------------------------------------------- Natronobacterium_innermongoliae -------------------------------------------------- Haloferax_volcanii -------------------------------------------------- Methanospirillum_hungatei -------------------------------------------------- Picrophilus_torridus_DSM_9790 -------------------------------------------------- Thermoplasma_acidophilum -------------------------------------------------- Giardia_ardeae -------------------------------------------------- Giardia_intestinalis -------------------------------------------------- Giardia_muris -------------------------------------------------- Amblyospora_bracteata -------------------------------------------------- Glomus_sp._W3349 -------------------------------------------------- Scutellospora_cerradensis -------------------------------------------------- Glomus_intraradices -------------------------------------------------- Smittium_culisetae -------------------------------------------------- Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus -------------------------------------------------- Tilletia_caries -------------------------------------------------- Mucor_circinelloides_f._lusitanicus -------------------------------------------------- Mucor_racemosus -------------------------------------------------- Rhizopus_oryzae -------------------------------------------------- Mytilus_edulis -------------------------------------------------- Placopecten_magellanicus -------------------------------------------------- Echinococcus_granulosus -------------------------------------------------- Drosophila_melanogaster -------------------------------------------------- Crossodonthina_koreana -------------------------------------------------- Androctonus_australis -------------------------------------------------- Okanagana_utahensis -------------------------------------------------- Artemia_salina -------------------------------------------------- Mus_musculus -------------------------------------------------- Rattus_norvegicus -------------------------------------------------- Homo_sapiens -------------------------------------------------- Oryctolagus_cuniculus -------------------------------------------------- Xenopus_borealis -------------------------------------------------- Xenopus_laevis -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Balamuthia_mandrillaris -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Entamoeba_histolytica -------------------------------------------------- Ichthyophonus_hoferi -------------------------------------------------- Dermocystidium_sp. -------------------------------------------------- Sphaerothecum_destruens -------------------------------------------------- Acanthocoepsis_unguiculata -------------------------------------------------- Diaphanoeca_grandis -------------------------------------------------- Allomyces_macrogynus -------------------------------------------------- Blastocladiella_emersonii -------------------------------------------------- Candida_albicans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Coccidioides_immitis -------------------------------------------------- Leishmania_major -------------------------------------------------- Trypanosoma_cruzi -------------------------------------------------- Trypanosoma_brucei -------------------------------------------------- Pneumocystis_carinii -------------------------------------------------- Cryptococcus_neoformans_var._neoformans -------------------------------------------------- fungal_contaminant_of_QPX_isolate -------------------------------------------------- Ustilago_maydis -------------------------------------------------- Mnemiopsis_leidyi -------------------------------------------------- Tripedalia_cystophora -------------------------------------------------- Microciona_prolifera -------------------------------------------------- Psorospermium_haeckeli -------------------------------------------------- Euglypha_rotunda -------------------------------------------------- Paulinella_chromatophora -------------------------------------------------- Antirrhinum_majus -------------------------------------------------- Sesamum_indicum -------------------------------------------------- Digitalis_grandiflora -------------------------------------------------- Plantago_lanceolata -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Arabidopsis_thaliana -------------------------------------------------- Sinapis_alba -------------------------------------------------- Solanum_tuberosum -------------------------------------------------- Fragaria_x_ananassa -------------------------------------------------- Glycine_max -------------------------------------------------- Oryza_sativa -------------------------------------------------- Zea_mays -------------------------------------------------- F -------------------------------------------------- Genicularia_spirotaenia -------------------------------------------------- F -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- FChlorella'_luteoviridis -------------------------------------------------- Oxytricha_longa -------------------------------------------------- Paraurostyla_weissei -------------------------------------------------- Cyrtohymena_citrina -------------------------------------------------- Gastrostyla_steinii -------------------------------------------------- Pleurotricha_lanceolota -------------------------------------------------- Onychodromus_quadricornutus -------------------------------------------------- Stylonychia_lemnae -------------------------------------------------- Stylonychia_mytilus -------------------------------------------------- Engelmanniella_mobilis -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Uroleptus_gallina -------------------------------------------------- Uroleptus_pisces -------------------------------------------------- Paruroleptus_lepisma -------------------------------------------------- Urostyla_grandis -------------------------------------------------- Balantidium_coli -------------------------------------------------- Euplotes_aediculatus -------------------------------------------------- Tetrahymena_thermophila -------------------------------------------------- Bangia_sp._(Northwest_Territories/NWT) -------------------------------------------------- Bangia_sp._(Virgin_Islands/VIS7) -------------------------------------------------- Erythrotrichia_carnea -------------------------------------------------- Rhodochaete_parvula -------------------------------------------------- Compsopogon_coeruleus -------------------------------------------------- Porphyridium_aerugineum -------------------------------------------------- Rhodella_maculata -------------------------------------------------- Aulacoseira_ambigua -------------------------------------------------- Aulacoseira_baicalensis -------------------------------------------------- Stephanopyxis_nipponica -------------------------------------------------- Coscinodiscus_radiatus -------------------------------------------------- Corethron_criophilum -------------------------------------------------- Amphora_cf._capitellata -------------------------------------------------- Sellaphora_pupula_f._capitata -------------------------------------------------- Thalassiosira_antarctica -------------------------------------------------- Encyonema_triangulatum -------------------------------------------------- Achnanthes_bongranii -------------------------------------------------- F -------------------------------------------------- Diatoma_tenue -------------------------------------------------- Grammatophora_marina -------------------------------------------------- Thalassionema_sp._p474 -------------------------------------------------- Rhaphoneis_belgicae -------------------------------------------------- Undatella_sp._p446 -------------------------------------------------- Cymatosira_belgica -------------------------------------------------- Odontella_sinensis -------------------------------------------------- Ditylum_brightwellii -------------------------------------------------- Lithodesmium_undulatum -------------------------------------------------- Thalassiosira_eccentrica -------------------------------------------------- Thalassiosira_pseudonana -------------------------------------------------- Skeletonema_costatum -------------------------------------------------- Pleurosira_cf._laevis -------------------------------------------------- Lauderia_borealis -------------------------------------------------- F -------------------------------------------------- Bolidomonas_mediterranea -------------------------------------------------- Bolidomonas_pacifica -------------------------------------------------- Labyrinthuloides_minuta -------------------------------------------------- Leptocylindrus_danicus -------------------------------------------------- Chaetoceros_sp. -------------------------------------------------- Aphanomyces_invadans -------------------------------------------------- Lagenidium_giganteum -------------------------------------------------- Melosira_varians -------------------------------------------------- Blastocystis_hominis -------------------------------------------------- Perkinsus_marinus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Alexandrium_fundyense -------------------------------------------------- Babesia_bigemina -------------------------------------------------- Babesia_canis -------------------------------------------------- Babesia_sp._'Oklahoma_dog' -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_rodhaini -------------------------------------------------- Babesia_gibsoni -------------------------------------------------- Babesia_bovis -------------------------------------------------- Jakoba_libera -------------------------------------------------- Reclinomonas_americana -------------------------------------------------- Bonamia_ostreae -------------------------------------------------- Audouinella_dasyae -------------------------------------------------- Audouinella_hermannii -------------------------------------------------- Nemalion_helminthoides -------------------------------------------------- Batrachospermum_gelatinosum -------------------------------------------------- Nemalionopsis_tortuosa -------------------------------------------------- Thorea_hispida -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Nemalionopsis_shawii -------------------------------------------------- Balbiania_investiens -------------------------------------------------- Batrachospermum_macrosporum -------------------------------------------------- Ahnfeltia_plicata -------------------------------------------------- Corallina_officinalis -------------------------------------------------- Rhodogorgon_carriebowensis -------------------------------------------------- Bonnemaisonia_hamifera -------------------------------------------------- Gelidium_vagum -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Halymenia_plana -------------------------------------------------- Rhodymenia_leptophylla -------------------------------------------------- Plocamiocolax_pulvinata -------------------------------------------------- Ceramium_rubrum -------------------------------------------------- Gracilariopsis_sp. -------------------------------------------------- Bostrychia_moritziana -------------------------------------------------- Hildenbrandia_rubra -------------------------------------------------- Dixonielloa_grisea -------------------------------------------------- Naegleria_fowleri -------------------------------------------------- Naegleria_gruberi -------------------------------------------------- Hexamita_sp. -------------------------------------------------- Tritrichomonas_foetus -------------------------------------------------- Amblyospora_khaliulini -------------------------------------------------- Edhazardia_aedis -------------------------------------------------- Amblyospora_connecticus -------------------------------------------------- Intrapredatorus_barri -------------------------------------------------- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. -------------------------------------------------- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii -------------------------------------------------- Weiseria_palustris -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani -------------------------------------------------- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae -------------------------------------------------- Thelohania_solenopsae -------------------------------------------------- Visvesvaria_acridophagus -------------------------------------------------- Bacillidium_sp. -------------------------------------------------- Pseudonosema_cristatellae -------------------------------------------------- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum -------------------------------------------------- Pleistophora_mirandellae -------------------------------------------------- Trachipleistophora_hominis -------------------------------------------------- Vavraia_culicis -------------------------------------------------- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii -------------------------------------------------- F -------------------------------------------------- Dictyocoela_gammarellum -------------------------------------------------- Microsporidium_prosopium -------------------------------------------------- Antonospora_scoticae -------------------------------------------------- Paranosema_whitei -------------------------------------------------- #=GC SS_cons .................................................. Cynomorium_coccineum -------------------------------------------------- Cytinus_ruber -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Spinacia_oleracea -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Ricinus_communis -------------------------------------------------- F -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Pyramimonas_parkeae -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Pilostyles_thurberi -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Penicillium_chrysogenum -------------------------------------------------- Emericella_nidulans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Williopsis_saturnus_var._mrakii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Babesia_bovis -------------------------------------------------- Tetrahymena_pyriformis -------------------------------------------------- Suillus_sinuspaulianus AAUUUUUAUUUAAAAUUAUAUAAAUAAUAACUAAAUAAAAAUGAUAAUAU Paramecium_tetraurelia -------------------------------------------------- Dictyostelium_discoideum -------------------------------------------------- Physarum_polycephalum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Hydnora_africana -------------------------------------------------- Codium_fragile -------------------------------------------------- Caulerpa_sertularioides -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cryptomonas_sp. -------------------------------------------------- Palmaria_palmata -------------------------------------------------- Heterosigma_akashiwo -------------------------------------------------- Skeletonema_pseudocostatum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Cyanidium_caldarium -------------------------------------------------- Emiliania_huxleyi -------------------------------------------------- Euglena_gracilis -------------------------------------------------- Anabaena_sp. -------------------------------------------------- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -------------------------------------------------- F -------------------------------------------------- Oscillatoria_agardhii -------------------------------------------------- Pleurocapsa_sp. -------------------------------------------------- Microcystis_aeruginosa -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos -------------------------------------------------- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Bacillus_anthracis -------------------------------------------------- Bacillus_cereus -------------------------------------------------- Enterococcus_faecalis -------------------------------------------------- Enterococcus_faecium -------------------------------------------------- Listeria_monocytogenes -------------------------------------------------- Bacillus_subtilis -------------------------------------------------- Bacillus_subtilis_A -------------------------------------------------- Bacillus_halodurans -------------------------------------------------- Staphylococcus_aureus -------------------------------------------------- Staphylococcus_aureus_N315 -------------------------------------------------- Lactococcus_lactis_subsp._lactis -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Lactobacillus_acidophilus -------------------------------------------------- Mycoplasma_capricolum -------------------------------------------------- Mycoplasma_mycoides -------------------------------------------------- Erysipelothrix_rhusiopathiae_(alpha-P15) -------------------------------------------------- Clostridium_innocuum -------------------------------------------------- Mycoplasma_genitalium -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_gallisepticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Mycoplasma_hyopneumoniae -------------------------------------------------- Fusobacterium_necrophorum -------------------------------------------------- Fusobacterium_nucleatum_subsp._nucleatum -------------------------------------------------- Streptobacillus_moniliformis -------------------------------------------------- Clostridium_botulinum_type_f -------------------------------------------------- Clostridium_tetani -------------------------------------------------- Clostridium_perfringens -------------------------------------------------- Clostridium_difficile -------------------------------------------------- Eubacterium_brachy -------------------------------------------------- Epulopiscium_sp. -------------------------------------------------- Heliobacterium_chlorum -------------------------------------------------- Glycine_max -------------------------------------------------- Oenothera_berteroana -------------------------------------------------- Secale_cereale -------------------------------------------------- Triticum_aestivum -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Gluconacetobacter_liquefaciens -------------------------------------------------- Bradyrhizobium_japonicum -------------------------------------------------- Rhodoblastus_acidophilus -------------------------------------------------- Azorhizobium_caulinodans -------------------------------------------------- Bartonella_quintana -------------------------------------------------- Mesorhizobium_loti -------------------------------------------------- Agrobacterium_tumefaciens -------------------------------------------------- Bartonella_bacilliformis -------------------------------------------------- Bartonella_henselae -------------------------------------------------- Brucella_melitensis -------------------------------------------------- Rhodobium_orientis -------------------------------------------------- F -------------------------------------------------- Rickettsia_bellii -------------------------------------------------- Rickettsia_felis_URRWXCal2 -------------------------------------------------- Rickettsia_prowazekii -------------------------------------------------- Rickettsia_prowazekii_(str._Madrid_E) -------------------------------------------------- Rickettsia_rickettsii -------------------------------------------------- Acinetobacter_calcoaceticus -------------------------------------------------- Psychrobacter_pacificensis -------------------------------------------------- Chromohalobacter_marismortui -------------------------------------------------- F -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_sp. -------------------------------------------------- Pseudomonas_putida -------------------------------------------------- Coxiella_burnetii -------------------------------------------------- Methylococcus_capsulatus -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Allochromatium_vinosum -------------------------------------------------- Beggiatoa_sp._1401-13 -------------------------------------------------- Aeromonas_hydrophila -------------------------------------------------- Shewanella_putrefaciens -------------------------------------------------- Citrobacter_freundii -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Klebsiella_pneumoniae -------------------------------------------------- Plesiomonas_shigelloides -------------------------------------------------- Yersinia_pestis -------------------------------------------------- F -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Escherichia_coli_O157:H7 -------------------------------------------------- Escherichia_coli_O157:H7_EDL933 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli_K12 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Salmonella_typhimurium -------------------------------------------------- Serratia_marcescens -------------------------------------------------- Edwardsiella_tarda -------------------------------------------------- Proteus_vulgaris -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- F -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae_(operons_A-F) -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Xanthomonas_albilineans -------------------------------------------------- Xanthomonas_campestris -------------------------------------------------- Xylella_fastidiosa -------------------------------------------------- Dichelobacter_nodosus -------------------------------------------------- Francisella_tularensis -------------------------------------------------- Bordetella_parapertussis -------------------------------------------------- Bordetella_pertussis -------------------------------------------------- Bordetella_bronchiseptica -------------------------------------------------- unidentified_proteobacterium -------------------------------------------------- Burkholderia_mallei -------------------------------------------------- Burkholderia_sp. -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -------------------------------------------------- Comamonas_testosteroni -------------------------------------------------- Desulfovibrio_desulfuricans -------------------------------------------------- Myxococcus_xanthus -------------------------------------------------- Deferribacter_thermophilus -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_hermsii -------------------------------------------------- Spirochaeta_aurantia -------------------------------------------------- Treponema_pallidum_(rRNA_A) -------------------------------------------------- Leptonema_illini -------------------------------------------------- Leptospira_interrogans -------------------------------------------------- Chlamydia_trachomatis_D/UW-3/CX -------------------------------------------------- Chlamydia_trachomatis_L2/434/BU -------------------------------------------------- Chlamydia_muridarum -------------------------------------------------- Chlamydophila_pneumoniae_AR39 -------------------------------------------------- Chlamydophila_pneumoniae -------------------------------------------------- Chlamydophila_pneumoniae_J138 -------------------------------------------------- F -------------------------------------------------- Chlamydophila_psittaci -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- Porphyromonas_gingivalis -------------------------------------------------- Prosthecochloris_vibrioformis -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_sputorum -------------------------------------------------- F -------------------------------------------------- Helicobacter_pylori_J99 -------------------------------------------------- Helicobacter_pylori -------------------------------------------------- Acidobacterium_capsulatum -------------------------------------------------- Holophaga_foetida -------------------------------------------------- Arthrobacter_globiformis -------------------------------------------------- Micrococcus_luteus -------------------------------------------------- Frankia_sp. -------------------------------------------------- Streptomyces_bottropensis -------------------------------------------------- Streptomyces_scabiei -------------------------------------------------- Streptomyces_neyagawaensis -------------------------------------------------- F -------------------------------------------------- Streptomyces_sp. -------------------------------------------------- Streptomyces_acidiscabies -------------------------------------------------- Streptomyces_griseus -------------------------------------------------- Streptomyces_ornatus -------------------------------------------------- Streptomyces_subrutilus -------------------------------------------------- Streptomyces_bikiniensis -------------------------------------------------- Streptomyces_galbus -------------------------------------------------- Streptomyces_hygroscopicus -------------------------------------------------- Streptomyces_lincolnensis -------------------------------------------------- Streptomyces_coelicolor -------------------------------------------------- Streptomyces_tendae -------------------------------------------------- Streptomyces_ambofaciens -------------------------------------------------- Streptomyces_eurythermus -------------------------------------------------- Streptomyces_nodosus -------------------------------------------------- Streptomyces_sampsonii -------------------------------------------------- Streptomyces_glaucescens -------------------------------------------------- Streptomyces_pseudogriseolus -------------------------------------------------- Streptomyces_caelestis -------------------------------------------------- Streptomyces_bluensis -------------------------------------------------- Streptomyces_espinosus -------------------------------------------------- Streptomyces_mashuensis -------------------------------------------------- Streptomyces_rimosus -------------------------------------------------- Streptomyces_limosus -------------------------------------------------- Streptomyces_odorifer -------------------------------------------------- Streptomyces_felleus -------------------------------------------------- Streptomyces_albidoflavus -------------------------------------------------- Streptomyces_gougerotii -------------------------------------------------- Streptomyces_rutgersensis -------------------------------------------------- Streptomyces_intermedius -------------------------------------------------- F -------------------------------------------------- Streptomyces_thermoviolaceus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus -------------------------------------------------- Streptomyces_megasporus -------------------------------------------------- Streptomyces_thermolineatus -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_avium -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides -------------------------------------------------- Rhodococcus_erythropolis -------------------------------------------------- Corynebacterium_diphtheriae -------------------------------------------------- Actinomyces_israelii -------------------------------------------------- Brachyspira_hyodysenteriae -------------------------------------------------- Geotoga_subterranea -------------------------------------------------- Petrotoga_miotherma -------------------------------------------------- Brevinema_andersonii -------------------------------------------------- Herpetosiphon_aurantiacus -------------------------------------------------- F -------------------------------------------------- Aquifex_aeolicus -------------------------------------------------- Aquifex_pyrophilus -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- Thermus_aquaticus -------------------------------------------------- Thermomicrobium_roseum -------------------------------------------------- Pirellula_marina -------------------------------------------------- Pirellula_staleyi -------------------------------------------------- Planctomycetaceae_Schlesner_670 -------------------------------------------------- Gemmata_obscuriglobus -------------------------------------------------- Isosphaera_pallida -------------------------------------------------- Pyrococcus_abyssi -------------------------------------------------- Pyrococcus_horikoshii -------------------------------------------------- Pyrococcus_furiosus -------------------------------------------------- Thermococcus_celer -------------------------------------------------- Archaeoglobus_fulgidus -------------------------------------------------- Nanoarchaeum_equitans -------------------------------------------------- Aeropyrum_pernix_(str._K1) -------------------------------------------------- Pyrodictium_occultum -------------------------------------------------- Thermoproteus_tenax -------------------------------------------------- Sulfolobus_acidocaldarius -------------------------------------------------- Sulfolobus_solfataricus -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum -------------------------------------------------- Methanococcus_vannielii -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -------------------------------------------------- Natronorubrum_bangense -------------------------------------------------- Natronobacterium_innermongoliae -------------------------------------------------- Haloferax_volcanii -------------------------------------------------- Methanospirillum_hungatei -------------------------------------------------- Picrophilus_torridus_DSM_9790 -------------------------------------------------- Thermoplasma_acidophilum -------------------------------------------------- Giardia_ardeae -------------------------------------------------- Giardia_intestinalis -------------------------------------------------- Giardia_muris -------------------------------------------------- Amblyospora_bracteata -------------------------------------------------- Glomus_sp._W3349 -------------------------------------------------- Scutellospora_cerradensis -------------------------------------------------- Glomus_intraradices -------------------------------------------------- Smittium_culisetae -------------------------------------------------- Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus -------------------------------------------------- Tilletia_caries -------------------------------------------------- Mucor_circinelloides_f._lusitanicus -------------------------------------------------- Mucor_racemosus -------------------------------------------------- Rhizopus_oryzae -------------------------------------------------- Mytilus_edulis -------------------------------------------------- Placopecten_magellanicus -------------------------------------------------- Echinococcus_granulosus -------------------------------------------------- Drosophila_melanogaster -------------------------------------------------- Crossodonthina_koreana -------------------------------------------------- Androctonus_australis -------------------------------------------------- Okanagana_utahensis -------------------------------------------------- Artemia_salina -------------------------------------------------- Mus_musculus -------------------------------------------------- Rattus_norvegicus -------------------------------------------------- Homo_sapiens -------------------------------------------------- Oryctolagus_cuniculus -------------------------------------------------- Xenopus_borealis -------------------------------------------------- Xenopus_laevis -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Balamuthia_mandrillaris -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Entamoeba_histolytica -------------------------------------------------- Ichthyophonus_hoferi -------------------------------------------------- Dermocystidium_sp. -------------------------------------------------- Sphaerothecum_destruens -------------------------------------------------- Acanthocoepsis_unguiculata -------------------------------------------------- Diaphanoeca_grandis -------------------------------------------------- Allomyces_macrogynus -------------------------------------------------- Blastocladiella_emersonii -------------------------------------------------- Candida_albicans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Coccidioides_immitis -------------------------------------------------- Leishmania_major -------------------------------------------------- Trypanosoma_cruzi -------------------------------------------------- Trypanosoma_brucei -------------------------------------------------- Pneumocystis_carinii -------------------------------------------------- Cryptococcus_neoformans_var._neoformans -------------------------------------------------- fungal_contaminant_of_QPX_isolate -------------------------------------------------- Ustilago_maydis -------------------------------------------------- Mnemiopsis_leidyi -------------------------------------------------- Tripedalia_cystophora -------------------------------------------------- Microciona_prolifera -------------------------------------------------- Psorospermium_haeckeli -------------------------------------------------- Euglypha_rotunda -------------------------------------------------- Paulinella_chromatophora -------------------------------------------------- Antirrhinum_majus -------------------------------------------------- Sesamum_indicum -------------------------------------------------- Digitalis_grandiflora -------------------------------------------------- Plantago_lanceolata -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Arabidopsis_thaliana -------------------------------------------------- Sinapis_alba -------------------------------------------------- Solanum_tuberosum -------------------------------------------------- Fragaria_x_ananassa -------------------------------------------------- Glycine_max -------------------------------------------------- Oryza_sativa -------------------------------------------------- Zea_mays -------------------------------------------------- F -------------------------------------------------- Genicularia_spirotaenia -------------------------------------------------- F -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- FChlorella'_luteoviridis -------------------------------------------------- Oxytricha_longa -------------------------------------------------- Paraurostyla_weissei -------------------------------------------------- Cyrtohymena_citrina -------------------------------------------------- Gastrostyla_steinii -------------------------------------------------- Pleurotricha_lanceolota -------------------------------------------------- Onychodromus_quadricornutus -------------------------------------------------- Stylonychia_lemnae -------------------------------------------------- Stylonychia_mytilus -------------------------------------------------- Engelmanniella_mobilis -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Uroleptus_gallina -------------------------------------------------- Uroleptus_pisces -------------------------------------------------- Paruroleptus_lepisma -------------------------------------------------- Urostyla_grandis -------------------------------------------------- Balantidium_coli -------------------------------------------------- Euplotes_aediculatus -------------------------------------------------- Tetrahymena_thermophila -------------------------------------------------- Bangia_sp._(Northwest_Territories/NWT) -------------------------------------------------- Bangia_sp._(Virgin_Islands/VIS7) -------------------------------------------------- Erythrotrichia_carnea -------------------------------------------------- Rhodochaete_parvula -------------------------------------------------- Compsopogon_coeruleus -------------------------------------------------- Porphyridium_aerugineum -------------------------------------------------- Rhodella_maculata -------------------------------------------------- Aulacoseira_ambigua -------------------------------------------------- Aulacoseira_baicalensis -------------------------------------------------- Stephanopyxis_nipponica -------------------------------------------------- Coscinodiscus_radiatus -------------------------------------------------- Corethron_criophilum -------------------------------------------------- Amphora_cf._capitellata -------------------------------------------------- Sellaphora_pupula_f._capitata -------------------------------------------------- Thalassiosira_antarctica -------------------------------------------------- Encyonema_triangulatum -------------------------------------------------- Achnanthes_bongranii -------------------------------------------------- F -------------------------------------------------- Diatoma_tenue -------------------------------------------------- Grammatophora_marina -------------------------------------------------- Thalassionema_sp._p474 -------------------------------------------------- Rhaphoneis_belgicae -------------------------------------------------- Undatella_sp._p446 -------------------------------------------------- Cymatosira_belgica -------------------------------------------------- Odontella_sinensis -------------------------------------------------- Ditylum_brightwellii -------------------------------------------------- Lithodesmium_undulatum -------------------------------------------------- Thalassiosira_eccentrica -------------------------------------------------- Thalassiosira_pseudonana -------------------------------------------------- Skeletonema_costatum -------------------------------------------------- Pleurosira_cf._laevis -------------------------------------------------- Lauderia_borealis -------------------------------------------------- F -------------------------------------------------- Bolidomonas_mediterranea -------------------------------------------------- Bolidomonas_pacifica -------------------------------------------------- Labyrinthuloides_minuta -------------------------------------------------- Leptocylindrus_danicus -------------------------------------------------- Chaetoceros_sp. -------------------------------------------------- Aphanomyces_invadans -------------------------------------------------- Lagenidium_giganteum -------------------------------------------------- Melosira_varians -------------------------------------------------- Blastocystis_hominis -------------------------------------------------- Perkinsus_marinus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Alexandrium_fundyense -------------------------------------------------- Babesia_bigemina -------------------------------------------------- Babesia_canis -------------------------------------------------- Babesia_sp._'Oklahoma_dog' -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_rodhaini -------------------------------------------------- Babesia_gibsoni -------------------------------------------------- Babesia_bovis -------------------------------------------------- Jakoba_libera -------------------------------------------------- Reclinomonas_americana -------------------------------------------------- Bonamia_ostreae -------------------------------------------------- Audouinella_dasyae -------------------------------------------------- Audouinella_hermannii -------------------------------------------------- Nemalion_helminthoides -------------------------------------------------- Batrachospermum_gelatinosum -------------------------------------------------- Nemalionopsis_tortuosa -------------------------------------------------- Thorea_hispida -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Nemalionopsis_shawii -------------------------------------------------- Balbiania_investiens -------------------------------------------------- Batrachospermum_macrosporum -------------------------------------------------- Ahnfeltia_plicata -------------------------------------------------- Corallina_officinalis -------------------------------------------------- Rhodogorgon_carriebowensis -------------------------------------------------- Bonnemaisonia_hamifera -------------------------------------------------- Gelidium_vagum -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Halymenia_plana -------------------------------------------------- Rhodymenia_leptophylla -------------------------------------------------- Plocamiocolax_pulvinata -------------------------------------------------- Ceramium_rubrum -------------------------------------------------- Gracilariopsis_sp. -------------------------------------------------- Bostrychia_moritziana -------------------------------------------------- Hildenbrandia_rubra -------------------------------------------------- Dixonielloa_grisea -------------------------------------------------- Naegleria_fowleri -------------------------------------------------- Naegleria_gruberi -------------------------------------------------- Hexamita_sp. -------------------------------------------------- Tritrichomonas_foetus -------------------------------------------------- Amblyospora_khaliulini -------------------------------------------------- Edhazardia_aedis -------------------------------------------------- Amblyospora_connecticus -------------------------------------------------- Intrapredatorus_barri -------------------------------------------------- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. -------------------------------------------------- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii -------------------------------------------------- Weiseria_palustris -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani -------------------------------------------------- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae -------------------------------------------------- Thelohania_solenopsae -------------------------------------------------- Visvesvaria_acridophagus -------------------------------------------------- Bacillidium_sp. -------------------------------------------------- Pseudonosema_cristatellae -------------------------------------------------- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum -------------------------------------------------- Pleistophora_mirandellae -------------------------------------------------- Trachipleistophora_hominis -------------------------------------------------- Vavraia_culicis -------------------------------------------------- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii -------------------------------------------------- F -------------------------------------------------- Dictyocoela_gammarellum -------------------------------------------------- Microsporidium_prosopium -------------------------------------------------- Antonospora_scoticae -------------------------------------------------- Paranosema_whitei -------------------------------------------------- #=GC SS_cons .................................................. Cynomorium_coccineum -------------------------------------------------- Cytinus_ruber -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Spinacia_oleracea -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Ricinus_communis -------------------------------------------------- F -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Pyramimonas_parkeae -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Pilostyles_thurberi -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Neurospora_crassa ---------------------GAUGUAAUAAAAAAAAUUUUUUUUAAUUU Podospora_anserina ---------------------UUUACUCA--------------------- Penicillium_chrysogenum -------------------------------------------------- Emericella_nidulans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Williopsis_saturnus_var._mrakii ---------------------AAAUAUAAUAAUAAUUAAAUUAUUAUUUU Pedinomonas_minor -------------------------------------------------- Plasmodium_falciparum -------------------------UUAU--------------------- Babesia_bovis -------------------------UGCU--------------------- Tetrahymena_pyriformis ---------------------AGGUUGUA--------------------- Suillus_sinuspaulianus GAAAUAAGGUGUAGAGGUGAGGAUAGUAA--------------------- Paramecium_tetraurelia ---------------------ACUUGGAU--------------------- Dictyostelium_discoideum -------------------------------------------------- Physarum_polycephalum ---------------------AAAUACAU--------------------- Pylaiella_littoralis ------------------------UAAUA--------------------- Prototheca_wickerhamii -------------------------------------------------- Hydnora_africana -------------------------UCUC--------------------- Codium_fragile -----------------------UUGAAA--------------------- Caulerpa_sertularioides -------------------------UGCU--------------------- F ---------------------CUCUGACC--------------------- F ---------------------UGCAUGCU--------------------- Glaucocystis_nostochinearum ------------------------GUGCU--------------------- Gloeochaete_wittrockiana ------------------------GUGCU--------------------- Cyanophora_paradoxa ------------------------GUGCU--------------------- Cyanophora_paradoxa -------------------------UACC--------------------- Cryptomonas_sp. ------------------------AAAUC--------------------- Palmaria_palmata ------------------------ACACC--------------------- Heterosigma_akashiwo ---------------------AGGAUAUA--------------------- Skeletonema_pseudocostatum -------------------------UGCU--------------------- Pylaiella_littoralis ------------------------AAACU--------------------- Cyanidium_caldarium -------------------------UAUA--------------------- Emiliania_huxleyi --------------------------CAA--------------------- Euglena_gracilis ------------------------UGGAA--------------------- Anabaena_sp. --------------------------GAA--------------------- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -------------------------CAAA--------------------- F -------------------------------------------------- Oscillatoria_agardhii ---------------------CUCUGACC--------------------- Pleurocapsa_sp. ---------------------CUCUGACC--------------------- Microcystis_aeruginosa ---------------------CUCUGACC--------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos ---------------------AUGAAAAA--------------------- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae ---------------------CUCUGACC--------------------- Streptococcus_pyogenes ---------------------CUCUGACC--------------------- Bacillus_anthracis --------------------------UUA--------------------- Bacillus_cereus --------------------------UUA--------------------- Enterococcus_faecalis -------------------------------------------------- Enterococcus_faecium ---------------------CUCUGACC--------------------- Listeria_monocytogenes --------------------------UUU--------------------- Bacillus_subtilis -------------------------UUUA--------------------- Bacillus_subtilis_A -------------------------UUUA--------------------- Bacillus_halodurans -------------------------UUUU--------------------- Staphylococcus_aureus -------------------------UUUU--------------------- Staphylococcus_aureus_N315 -------------------------UUUU--------------------- Lactococcus_lactis_subsp._lactis -------------------------UUUA--------------------- Streptococcus_pyogenes -------------------------AAUU--------------------- Lactobacillus_acidophilus -------------------------UGAA--------------------- Mycoplasma_capricolum --------------------------UAA--------------------- Mycoplasma_mycoides -------------------------UUAA--------------------- Erysipelothrix_rhusiopathiae_(alpha-P15) --------------------------UAA--------------------- Clostridium_innocuum -------------------------CAUG--------------------- Mycoplasma_genitalium ---------------------CAAUUUUU--------------------- Mycoplasma_pneumoniae -------------------------UUUU--------------------- Mycoplasma_pneumoniae --------------------------UUU--------------------- Mycoplasma_gallisepticum --------------------------UUU--------------------- Ureaplasma_urealyticum -------------------------------------------------- Ureaplasma_urealyticum ----------------------GUCAAUU--------------------- Mycoplasma_hyopneumoniae -----------------------CGCAAU--------------------- Fusobacterium_necrophorum --------------------------UGC--------------------- Fusobacterium_nucleatum_subsp._nucleatum ------------------------AUUGA--------------------- Streptobacillus_moniliformis --------------------------UGC--------------------- Clostridium_botulinum_type_f --------------------------UGC--------------------- Clostridium_tetani --------------------------UGC--------------------- Clostridium_perfringens --------------------------UAA--------------------- Clostridium_difficile --------------------------UGC--------------------- Eubacterium_brachy ---------------------GUGCUGCA--------------------- Epulopiscium_sp. ---------------------CUCUGACC--------------------- Heliobacterium_chlorum --------------------------UGC--------------------- Glycine_max ---------------------AUACUCAA--------------------- Oenothera_berteroana ---------------------AUAGUCAA--------------------- Secale_cereale ---------------------AUAGUCAA--------------------- Triticum_aestivum ---------------------AUAGUCAA--------------------- Zea_mays ---------------------------AA--------------------- Marchantia_polymorpha ---------------------UACUCAAA--------------------- Nephroselmis_olivacea --------------------------AAA--------------------- Gluconacetobacter_liquefaciens --------------------------UGC--------------------- Bradyrhizobium_japonicum -------------------------CCAA--------------------- Rhodoblastus_acidophilus ------------------------UACAA--------------------- Azorhizobium_caulinodans --------------------------UGC--------------------- Bartonella_quintana ------------------------UUCAA--------------------- Mesorhizobium_loti ------------------------UGAAA--------------------- Agrobacterium_tumefaciens ------------------------CUCAA--------------------- Bartonella_bacilliformis ---------------------CUCUGACC--------------------- Bartonella_henselae ---------------------CUCUGACC--------------------- Brucella_melitensis ---------------------CUCUGACC--------------------- Rhodobium_orientis ---------------------CUCUGACC--------------------- F -------------------------------------------------- Rickettsia_bellii -----------------------UUCAAA--------------------- Rickettsia_felis_URRWXCal2 ---------------------GAAUCAAA--------------------- Rickettsia_prowazekii -----------------------AUCAAA--------------------- Rickettsia_prowazekii_(str._Madrid_E) -----------------------AUCAAA--------------------- Rickettsia_rickettsii -------------------------UGCU--------------------- Acinetobacter_calcoaceticus -------------------------UUAA--------------------- Psychrobacter_pacificensis -------------------------------------------------- Chromohalobacter_marismortui ---------------------CUCUGACC--------------------- F -------------------------------------------------- Pseudomonas_aeruginosa --------------------------UUA--------------------- Pseudomonas_aeruginosa --------------------------GAA--------------------- Pseudomonas_sp. --------------------------UGC--------------------- Pseudomonas_putida --------------------------UGC--------------------- Coxiella_burnetii ---------------------------UA--------------------- Methylococcus_capsulatus --------------------------UAA--------------------- Legionella_pneumophila ---------------------------AA--------------------- Legionella_pneumophila ---------------------CUCUGACC--------------------- Allochromatium_vinosum --------------------------UGA--------------------- Beggiatoa_sp._1401-13 --------------------------UGC--------------------- Aeromonas_hydrophila --------------------------UGC--------------------- Shewanella_putrefaciens --------------------------UGC--------------------- Citrobacter_freundii --------------------------UAA--------------------- Shigella_dysenteriae ---------------------------UA--------------------- Klebsiella_pneumoniae --------------------------UAA--------------------- Plesiomonas_shigelloides --------------------------UGA--------------------- Yersinia_pestis ----------------------------U--------------------- F -------------------------------------------------- Shigella_dysenteriae ----------------------------U--------------------- Escherichia_coli_O157:H7 --------------------------AAA--------------------- Escherichia_coli_O157:H7_EDL933 --------------------------AAA--------------------- Escherichia_coli --------------------------AAA--------------------- Escherichia_coli_K12 --------------------------AAA--------------------- Escherichia_coli --------------------------AAA--------------------- Escherichia_coli --------------------------AAA--------------------- Escherichia_coli --------------------------AAA--------------------- Salmonella_typhimurium --------------------------UAA--------------------- Serratia_marcescens --------------------------UAA--------------------- Edwardsiella_tarda ---------------------CUCUGACC--------------------- Proteus_vulgaris --------------------------UAA--------------------- Vibrio_cholerae ---------------------------UA--------------------- Vibrio_cholerae ---------------------------UA--------------------- Vibrio_cholerae ---------------------------UA--------------------- Vibrio_cholerae ---------------------------UG--------------------- Vibrio_cholerae ---------------------------UG--------------------- Vibrio_cholerae --------------------------UGA--------------------- F -------------------------------------------------- Haemophilus_influenzae ---------------------CUCUGACC--------------------- Haemophilus_influenzae ---------------------CUCUGACC--------------------- Haemophilus_influenzae ---------------------CUCUGACC--------------------- Haemophilus_influenzae ---------------------------AA--------------------- Haemophilus_influenzae_(operons_A-F) ---------------------------AA--------------------- Pasteurella_multocida --------------------------UAA--------------------- Pasteurella_multocida --------------------------GAA--------------------- Xanthomonas_albilineans ---------------------CUCUGACC--------------------- Xanthomonas_campestris ---------------------CUCUGACC--------------------- Xylella_fastidiosa --------------------------UAA--------------------- Dichelobacter_nodosus --------------------------UAA--------------------- Francisella_tularensis --------------------------UGC--------------------- Bordetella_parapertussis --------------------------UAA--------------------- Bordetella_pertussis --------------------------UAA--------------------- Bordetella_bronchiseptica -------------------------UGAA--------------------- unidentified_proteobacterium ---------------------CUCUGACC--------------------- Burkholderia_mallei ---------------------CUCUGACC--------------------- Burkholderia_sp. ------------------------GAUCC--------------------- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -------------------------UGAA--------------------- Comamonas_testosteroni -------------------------CGAA--------------------- Desulfovibrio_desulfuricans -------------------------UGAA--------------------- Myxococcus_xanthus --------------------------CAA--------------------- Deferribacter_thermophilus --------------------------UGC--------------------- Borrelia_burgdorferi --------------------------AUA--------------------- Borrelia_burgdorferi ------------------------AAAUA--------------------- Borrelia_hermsii --------------------------UGC--------------------- Spirochaeta_aurantia ---------------------UAUAUAUG--------------------- Treponema_pallidum_(rRNA_A) --------------------------AUG--------------------- Leptonema_illini ---------------------GAUUCAUA--------------------- Leptospira_interrogans --------------------------AAC--------------------- Chlamydia_trachomatis_D/UW-3/CX --------------------------UGC--------------------- Chlamydia_trachomatis_L2/434/BU --------------------------UUU--------------------- Chlamydia_muridarum --------------------------UGC--------------------- Chlamydophila_pneumoniae_AR39 --------------------------UUU--------------------- Chlamydophila_pneumoniae --------------------------UUU--------------------- Chlamydophila_pneumoniae_J138 --------------------------UUU--------------------- F -------------------------------------------------- Chlamydophila_psittaci --------------------------UUU--------------------- Deinococcus_radiodurans --------------------------UUU--------------------- Deinococcus_radiodurans --------------------------UUU--------------------- Bacteroides_fragilis ---------------------CUUUUACA--------------------- Porphyromonas_gingivalis --------------------------ACA--------------------- Prosthecochloris_vibrioformis ----------------------UUUUACA--------------------- Campylobacter_jejuni ------------------------UUUUU--------------------- Campylobacter_jejuni ------------------------UUUUU--------------------- Campylobacter_sputorum ---------------------AUGAGUGC--------------------- F -------------------------------------------------- Helicobacter_pylori_J99 ------------------------UGUUU--------------------- Helicobacter_pylori --------------------------UUU--------------------- Acidobacterium_capsulatum ---------------------CUCUGACC--------------------- Holophaga_foetida --------------------------UGC--------------------- Arthrobacter_globiformis ------------------------UUUCA--------------------- Micrococcus_luteus -----------------------UUUUUU--------------------- Frankia_sp. --------------------------UUG--------------------- Streptomyces_bottropensis ------------------------CAUUC--------------------- Streptomyces_scabiei ------------------------CAUUC--------------------- Streptomyces_neyagawaensis ------------------------CAUUC--------------------- F -------------------------------------------------- Streptomyces_sp. ------------------------CAUUC--------------------- Streptomyces_acidiscabies ------------------------CAUUC--------------------- Streptomyces_griseus ------------------------CAUUC--------------------- Streptomyces_ornatus --------------------------UGC--------------------- Streptomyces_subrutilus --------------------------UGC--------------------- Streptomyces_bikiniensis --------------------------UGC--------------------- Streptomyces_galbus --------------------------UGC--------------------- Streptomyces_hygroscopicus --------------------------UGC--------------------- Streptomyces_lincolnensis --------------------------UGC--------------------- Streptomyces_coelicolor ------------------------CAUUC--------------------- Streptomyces_tendae ------------------------CAUUC--------------------- Streptomyces_ambofaciens --------------------------UUC--------------------- Streptomyces_eurythermus ------------------------CAUUC--------------------- Streptomyces_nodosus --------------------------UUC--------------------- Streptomyces_sampsonii ------------------------CAUUC--------------------- Streptomyces_glaucescens --------------------------UGC--------------------- Streptomyces_pseudogriseolus --------------------------UGC--------------------- Streptomyces_caelestis --------------------------UGC--------------------- Streptomyces_bluensis --------------------------UGC--------------------- Streptomyces_espinosus --------------------------UGC--------------------- Streptomyces_mashuensis --------------------------UGC--------------------- Streptomyces_rimosus --------------------------UUC--------------------- Streptomyces_limosus ----------------------------U--------------------- Streptomyces_odorifer ----------------------------U--------------------- Streptomyces_felleus ----------------------------U--------------------- Streptomyces_albidoflavus ----------------------------U--------------------- Streptomyces_gougerotii ----------------------------U--------------------- Streptomyces_rutgersensis ----------------------------U--------------------- Streptomyces_intermedius ----------------------------U--------------------- F -------------------------------------------------- Streptomyces_thermoviolaceus ---------------------CUCUGACC--------------------- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus ---------------------CUCUGACC--------------------- Streptomyces_megasporus ---------------------CUCUGACC--------------------- Streptomyces_thermolineatus ---------------------CUCUGACC--------------------- Mycobacterium_tuberculosis ---------------------CUCUGACC--------------------- Mycobacterium_tuberculosis ---------------------CUCUGACC--------------------- Mycobacterium_avium ---------------------CUCUGACC--------------------- Mycobacterium_leprae -------------------------UUGU--------------------- Mycobacterium_leprae -----------------------UUUUGU--------------------- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides ---------------------CUCUGACC--------------------- Rhodococcus_erythropolis --------------------------UCA--------------------- Corynebacterium_diphtheriae ---------------------CUCUGACC--------------------- Actinomyces_israelii ---------------------CUCUGACC--------------------- Brachyspira_hyodysenteriae ----------------------------U--------------------- Geotoga_subterranea --------------------------UGG--------------------- Petrotoga_miotherma --------------------------AGG--------------------- Brevinema_andersonii ------------------------UAAUA--------------------- Herpetosiphon_aurantiacus -------------------------UUUG--------------------- F -------------------------------------------------- Aquifex_aeolicus ------------------------UUUCC--------------------- Aquifex_pyrophilus -------------------------UUCC--------------------- Thermotoga_maritima --------------------------UAU--------------------- Thermotoga_maritima --------------------------UAU--------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------UUUG--------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------UUUG--------------------- Thermus_aquaticus ---------------------CUCUGACC--------------------- Thermomicrobium_roseum -------------------------GGGG--------------------- Pirellula_marina --------------------------CAA--------------------- Pirellula_staleyi --------------------------CAA--------------------- Planctomycetaceae_Schlesner_670 -------------------------UGCU--------------------- Gemmata_obscuriglobus ---------------------CUCUGACC--------------------- Isosphaera_pallida --------------------------UGU--------------------- Pyrococcus_abyssi ---------------------UACUCCCU--------------------- Pyrococcus_horikoshii -------------------------------------------------- Pyrococcus_furiosus -------------------------------------------------- Thermococcus_celer -------------------------------------------------- Archaeoglobus_fulgidus -------------------------------------------------- Nanoarchaeum_equitans -------------------------------------------------- Aeropyrum_pernix_(str._K1) -------------------------------------------------- Pyrodictium_occultum -------------------------------------------------- Thermoproteus_tenax -------------------------------------------------- Sulfolobus_acidocaldarius -------------------------------------------------- Sulfolobus_solfataricus -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum -------------------------------------------------- Methanococcus_vannielii -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -------------------------------------------------- Natronorubrum_bangense -------------------------------------------------- Natronobacterium_innermongoliae -------------------------------------------------- Haloferax_volcanii -------------------------------------------------- Methanospirillum_hungatei -------------------------------------------------- Picrophilus_torridus_DSM_9790 -------------------------------------------------- Thermoplasma_acidophilum -------------------------------------------------- Giardia_ardeae ---------------------------CA--------------------- Giardia_intestinalis ---------------------------CA--------------------- Giardia_muris ---------------------------CA--------------------- Amblyospora_bracteata -------------------------------------------------- Glomus_sp._W3349 ---------------------AAUACAUG--------------------- Scutellospora_cerradensis ---------------------CUACUUGG--------------------- Glomus_intraradices ---------------------CUACUUGG--------------------- Smittium_culisetae ---------------------AUACAUGC--------------------- Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus ---------------------CUACAUGG--------------------- Tilletia_caries ---------------------UACAUGGA--------------------- Mucor_circinelloides_f._lusitanicus ---------------------CUACUUGG--------------------- Mucor_racemosus ---------------------CUACUUGG--------------------- Rhizopus_oryzae ---------------------CUACUUGG--------------------- Mytilus_edulis ---------------------AGCUAAUA--------------------- Placopecten_magellanicus ---------------------CUGUGGCA--------------------- Echinococcus_granulosus ---------------------UCAGGCCU--------------------- Drosophila_melanogaster ---------------------UGUGCUUU--------------------- Crossodonthina_koreana ---------------------AUUCUAGA--------------------- Androctonus_australis ---------------------AUUCUAGA--------------------- Okanagana_utahensis ---------------------GCGUCCGG--------------------- Artemia_salina ---------------------AUUCUAGA--------------------- Mus_musculus ---------------------UCCCGGGG--------------------- Rattus_norvegicus ---------------------CCCGUGGG--------------------- Homo_sapiens ---------------------UUCGCGGG--------------------- Oryctolagus_cuniculus ---------------------UGCCGACG--------------------- Xenopus_borealis ---------------------GGUAAUUC--------------------- Xenopus_laevis ---------------------GGUAAUUC--------------------- Acanthamoeba_castellanii ---------------------AUAAGCUU--------------------- Balamuthia_mandrillaris ---------------------AACCGAUG--------------------- Plasmodium_falciparum ---------------------AUAAGGAU--------------------- Plasmodium_falciparum ---------------------GUCAUAUG--------------------- Plasmodium_vivax ---------------------CCUUAGCA--------------------- Plasmodium_vivax ---------------------CUUGUCUC--------------------- Plasmodium_vivax ---------------------UAAGCCUU--------------------- Entamoeba_histolytica ---------------------AUUAUAUG--------------------- Ichthyophonus_hoferi ---------------------CUACUUGG--------------------- Dermocystidium_sp. ---------------------AGAGCUAA--------------------- Sphaerothecum_destruens ---------------------CUACUUGG--------------------- Acanthocoepsis_unguiculata ---------------------CUACAUGG--------------------- Diaphanoeca_grandis ---------------------CUACUUGG--------------------- Allomyces_macrogynus ---------------------GAGCUAAU--------------------- Blastocladiella_emersonii ---------------------GAGCUAAU--------------------- Candida_albicans ---------------------GUCAUAUG--------------------- Saccharomyces_cerevisiae ---------------------ACAUGGUA--------------------- Neurospora_crassa ---------------------CUACAUGG--------------------- Podospora_anserina ---------------------CUACAUGG--------------------- Coccidioides_immitis ---------------------CUACAUGG--------------------- Leishmania_major ---------------------AUCACUGC--------------------- Trypanosoma_cruzi ---------------------CAUGCAUG--------------------- Trypanosoma_brucei ---------------------AACUGCCC--------------------- Pneumocystis_carinii ---------------------CUACUUGG--------------------- Cryptococcus_neoformans_var._neoformans ---------------------CUACAUGG--------------------- fungal_contaminant_of_QPX_isolate ---------------------CUACAUGG--------------------- Ustilago_maydis ---------------------CUACAUGG--------------------- Mnemiopsis_leidyi ---------------------CUACAUGG--------------------- Tripedalia_cystophora ---------------------AGAGCUAA--------------------- Microciona_prolifera ---------------------CUACUUGG--------------------- Psorospermium_haeckeli ---------------------ACUACUGG--------------------- Euglypha_rotunda ---------------------AGAGCUAA--------------------- Paulinella_chromatophora ---------------------AGUAAUUC--------------------- Antirrhinum_majus ---------------------AGAGCUAA--------------------- Sesamum_indicum ---------------------CUACUCGG--------------------- Digitalis_grandiflora ---------------------CUACUCGG--------------------- Plantago_lanceolata ---------------------AGAGCUAA--------------------- Nicotiana_tabacum ---------------------CUACUCGG--------------------- Arabidopsis_thaliana ---------------------CUACUCGG--------------------- Sinapis_alba ---------------------CUACUCGG--------------------- Solanum_tuberosum ---------------------AGAGCUAA--------------------- Fragaria_x_ananassa ---------------------CUACUCGG--------------------- Glycine_max ---------------------CUACUCGG--------------------- Oryza_sativa ---------------------CUACUCGG--------------------- Zea_mays ---------------------CUACUCGG--------------------- F -------------------------------------------------- Genicularia_spirotaenia ---------------------CUACUUGG--------------------- F -------------------------------------------------- Cyanophora_paradoxa ---------------------CUACUUGG--------------------- Glaucocystis_nostochinearum ---------------------AGAGCUAA--------------------- Gloeochaete_wittrockiana ---------------------CUACUUGG--------------------- FChlorella'_luteoviridis ---------------------AUAGAGCU--------------------- Oxytricha_longa ---------------------UUACAUGG--------------------- Paraurostyla_weissei ---------------------UUACAUGG--------------------- Cyrtohymena_citrina ---------------------UUACAUGG--------------------- Gastrostyla_steinii ---------------------UUACAUGG--------------------- Pleurotricha_lanceolota ---------------------UUACAUGG--------------------- Onychodromus_quadricornutus ---------------------UUACAUGG--------------------- Stylonychia_lemnae ---------------------UUACAUGG--------------------- Stylonychia_mytilus ---------------------UUACAUGG--------------------- Engelmanniella_mobilis ---------------------UUACAUGG--------------------- Oxytricha_granulifera ---------------------UUACAUGG--------------------- Oxytricha_granulifera ---------------------UUACAUGG--------------------- Uroleptus_gallina ---------------------UUACAUGG--------------------- Uroleptus_pisces ---------------------UUACAUGG--------------------- Paruroleptus_lepisma ---------------------UUACAUGG--------------------- Urostyla_grandis ---------------------UUACAUGG--------------------- Balantidium_coli ---------------------GUCAUAUG--------------------- Euplotes_aediculatus ---------------------UUUAUUAG--------------------- Tetrahymena_thermophila ---------------------UUACAUGG--------------------- Bangia_sp._(Northwest_Territories/NWT) ---------------------CUACUUGG--------------------- Bangia_sp._(Virgin_Islands/VIS7) ---------------------AUUCUAGA--------------------- Erythrotrichia_carnea ---------------------UACUUGGA--------------------- Rhodochaete_parvula ---------------------UUACUCGG--------------------- Compsopogon_coeruleus ---------------------UUACUUGG--------------------- Porphyridium_aerugineum ---------------------UUACUUGG--------------------- Rhodella_maculata ---------------------UUACUCGG--------------------- Aulacoseira_ambigua ---------------------CUACUUGG--------------------- Aulacoseira_baicalensis ---------------------CUACUUGG--------------------- Stephanopyxis_nipponica ---------------------CUACUUGG--------------------- Coscinodiscus_radiatus ---------------------CUACUUGG--------------------- Corethron_criophilum ---------------------CUACUUGG--------------------- Amphora_cf._capitellata ---------------------CUACUUGG--------------------- Sellaphora_pupula_f._capitata ---------------------CUACUUGG--------------------- Thalassiosira_antarctica ---------------------CUACUUGG--------------------- Encyonema_triangulatum ---------------------CUACUUGG--------------------- Achnanthes_bongranii ---------------------CUACUUGG--------------------- F -------------------------------------------------- Diatoma_tenue ---------------------CUACUUGG--------------------- Grammatophora_marina ---------------------CUACUUGG--------------------- Thalassionema_sp._p474 ---------------------CUAAUUGG--------------------- Rhaphoneis_belgicae ---------------------CUACUUGG--------------------- Undatella_sp._p446 ---------------------CUACUUGG--------------------- Cymatosira_belgica ---------------------CUACUUGG--------------------- Odontella_sinensis ---------------------CUACUUGG--------------------- Ditylum_brightwellii ---------------------CUACUUGG--------------------- Lithodesmium_undulatum ---------------------CUACUUGG--------------------- Thalassiosira_eccentrica ---------------------CUACUUGG--------------------- Thalassiosira_pseudonana ---------------------CUACUUGG--------------------- Skeletonema_costatum ---------------------CUACUUGG--------------------- Pleurosira_cf._laevis ---------------------CUACUUGG--------------------- Lauderia_borealis ---------------------CUACUUGG--------------------- F -------------------------------------------------- Bolidomonas_mediterranea ---------------------CUACUUGG--------------------- Bolidomonas_pacifica ---------------------AUUCUAGA--------------------- Labyrinthuloides_minuta ---------------------CUACUUGG--------------------- Leptocylindrus_danicus ---------------------CUACUUGG--------------------- Chaetoceros_sp. ---------------------CUACUUGG--------------------- Aphanomyces_invadans ---------------------CUACUUGG--------------------- Lagenidium_giganteum ---------------------CUACUUGG--------------------- Melosira_varians ---------------------CUACUUGG--------------------- Blastocystis_hominis ---------------------CUACUUGG--------------------- Perkinsus_marinus ---------------------CUAUUUGG--------------------- Toxoplasma_gondii ---------------------CUACAUGG--------------------- Alexandrium_fundyense ---------------------CUAAAUGG--------------------- Babesia_bigemina ---------------------CUGCCAGU--------------------- Babesia_canis ---------------------GUAUUCUU--------------------- Babesia_sp._'Oklahoma_dog' ---------------------ACAGUUAU--------------------- Babesia_microti ---------------------UUACAUGG--------------------- Babesia_microti ---------------------UUACAUGG--------------------- Babesia_microti ---------------------UUACAUGG--------------------- Babesia_microti ---------------------UUACAUGG--------------------- Babesia_microti ---------------------UUACAUGG--------------------- Babesia_rodhaini ---------------------UUACAUGG--------------------- Babesia_gibsoni ---------------------CUACAUGG--------------------- Babesia_bovis ---------------------AUCGGGUU--------------------- Jakoba_libera ---------------------CUACAUGG--------------------- Reclinomonas_americana ---------------------CUGAUCCU--------------------- Bonamia_ostreae ---------------------AUAGUUUA--------------------- Audouinella_dasyae ---------------------CUACUCGG--------------------- Audouinella_hermannii ---------------------CUACUCGG--------------------- Nemalion_helminthoides ---------------------CUACUCGG--------------------- Batrachospermum_gelatinosum ---------------------CUACUCGG--------------------- Nemalionopsis_tortuosa ---------------------CUACUCGG--------------------- Thorea_hispida ---------------------CUACUCGG--------------------- Thorea_violacea ---------------------CUACUCGG--------------------- Thorea_violacea ---------------------GCUCGGUA--------------------- Thorea_violacea ---------------------GCUCGGUA--------------------- Nemalionopsis_shawii ---------------------CUACUCGG--------------------- Balbiania_investiens ---------------------CUACUCGG--------------------- Batrachospermum_macrosporum ---------------------CUACUCGG--------------------- Ahnfeltia_plicata ---------------------CUACUCGG--------------------- Corallina_officinalis ---------------------CUACUCGG--------------------- Rhodogorgon_carriebowensis ---------------------UUCUUCGA--------------------- Bonnemaisonia_hamifera ---------------------GGCUCGGU--------------------- Gelidium_vagum ---------------------GCUCGGUA--------------------- Chondrus_crispus ---------------------CUACUUGG--------------------- Halymenia_plana ---------------------GCUCGGUA--------------------- Rhodymenia_leptophylla ---------------------CUACUCGG--------------------- Plocamiocolax_pulvinata ---------------------CUACCGGA--------------------- Ceramium_rubrum ---------------------CUACUCGG--------------------- Gracilariopsis_sp. ---------------------CUACUCGG--------------------- Bostrychia_moritziana ---------------------CGGUAAAA--------------------- Hildenbrandia_rubra ---------------------ACUACCGG--------------------- Dixonielloa_grisea ---------------------UAAACGGA--------------------- Naegleria_fowleri ---------------------CGGGAAAG--------------------- Naegleria_gruberi ---------------------GGAAAGUG--------------------- Hexamita_sp. ---------------------AUGCCAGG--------------------- Tritrichomonas_foetus ---------------------CUCAGAAU--------------------- Amblyospora_khaliulini -------------------------------------------------- Edhazardia_aedis -------------------------------------------------- Amblyospora_connecticus -------------------------------------------------- Intrapredatorus_barri -------------------------------------------------- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. -------------------------------------------------- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii -------------------------------------------------- Weiseria_palustris -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani -------------------------------------------------- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae -------------------------------------------------- Thelohania_solenopsae -------------------------GAAU--------------------- Visvesvaria_acridophagus -------------------------------------------------- Bacillidium_sp. -------------------------------------------------- Pseudonosema_cristatellae -------------------------------------------------- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum -------------------------------------------------- Pleistophora_mirandellae -------------------------------------------------- Trachipleistophora_hominis -------------------------------------------------- Vavraia_culicis -------------------------------------------------- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii -------------------------------------------------- F -------------------------------------------------- Dictyocoela_gammarellum -------------------------------------------------- Microsporidium_prosopium ----------------------------U--------------------- Antonospora_scoticae -------------------------------------------------- Paranosema_whitei ----------------------------U--------------------- #=GC SS_cons .................................................. Cynomorium_coccineum -------------------------------------------------- Cytinus_ruber -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Spinacia_oleracea -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Ricinus_communis -------------------------------------------------- F -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Pyramimonas_parkeae -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Pilostyles_thurberi -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Neurospora_crassa UAUAUUACAUCAAUAAAAAUAGAUGAGUUUGGUGAUGGCUCUGAUUGAAC Podospora_anserina -------------------------------------------------- Penicillium_chrysogenum -------------------------------------------------- Emericella_nidulans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Williopsis_saturnus_var._mrakii AGAG---------------------------------------------- Pedinomonas_minor -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Babesia_bovis -------------------------------------------------- Tetrahymena_pyriformis -------------------------------------------------- Suillus_sinuspaulianus -------------------------------------------------- Paramecium_tetraurelia -------------------------------------------------- Dictyostelium_discoideum -------------------------------------------------- Physarum_polycephalum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Hydnora_africana -------------------------------------------------- Codium_fragile -------------------------------------------------- Caulerpa_sertularioides -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cryptomonas_sp. -------------------------------------------------- Palmaria_palmata -------------------------------------------------- Heterosigma_akashiwo -------------------------------------------------- Skeletonema_pseudocostatum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Cyanidium_caldarium -------------------------------------------------- Emiliania_huxleyi -------------------------------------------------- Euglena_gracilis -------------------------------------------------- Anabaena_sp. -------------------------------------------------- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -------------------------------------------------- F -------------------------------------------------- Oscillatoria_agardhii -------------------------------------------------- Pleurocapsa_sp. -------------------------------------------------- Microcystis_aeruginosa -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos -------------------------------------------------- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Bacillus_anthracis -------------------------------------------------- Bacillus_cereus -------------------------------------------------- Enterococcus_faecalis -------------------------------------------------- Enterococcus_faecium -------------------------------------------------- Listeria_monocytogenes -------------------------------------------------- Bacillus_subtilis -------------------------------------------------- Bacillus_subtilis_A -------------------------------------------------- Bacillus_halodurans -------------------------------------------------- Staphylococcus_aureus -------------------------------------------------- Staphylococcus_aureus_N315 -------------------------------------------------- Lactococcus_lactis_subsp._lactis -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Lactobacillus_acidophilus -------------------------------------------------- Mycoplasma_capricolum -------------------------------------------------- Mycoplasma_mycoides -------------------------------------------------- Erysipelothrix_rhusiopathiae_(alpha-P15) -------------------------------------------------- Clostridium_innocuum -------------------------------------------------- Mycoplasma_genitalium -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_gallisepticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Mycoplasma_hyopneumoniae -------------------------------------------------- Fusobacterium_necrophorum -------------------------------------------------- Fusobacterium_nucleatum_subsp._nucleatum -------------------------------------------------- Streptobacillus_moniliformis -------------------------------------------------- Clostridium_botulinum_type_f -------------------------------------------------- Clostridium_tetani -------------------------------------------------- Clostridium_perfringens -------------------------------------------------- Clostridium_difficile -------------------------------------------------- Eubacterium_brachy -------------------------------------------------- Epulopiscium_sp. -------------------------------------------------- Heliobacterium_chlorum -------------------------------------------------- Glycine_max -------------------------------------------------- Oenothera_berteroana -------------------------------------------------- Secale_cereale -------------------------------------------------- Triticum_aestivum -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Gluconacetobacter_liquefaciens -------------------------------------------------- Bradyrhizobium_japonicum -------------------------------------------------- Rhodoblastus_acidophilus -------------------------------------------------- Azorhizobium_caulinodans -------------------------------------------------- Bartonella_quintana -------------------------------------------------- Mesorhizobium_loti -------------------------------------------------- Agrobacterium_tumefaciens -------------------------------------------------- Bartonella_bacilliformis -------------------------------------------------- Bartonella_henselae -------------------------------------------------- Brucella_melitensis -------------------------------------------------- Rhodobium_orientis -------------------------------------------------- F -------------------------------------------------- Rickettsia_bellii -------------------------------------------------- Rickettsia_felis_URRWXCal2 -------------------------------------------------- Rickettsia_prowazekii -------------------------------------------------- Rickettsia_prowazekii_(str._Madrid_E) -------------------------------------------------- Rickettsia_rickettsii -------------------------------------------------- Acinetobacter_calcoaceticus -------------------------------------------------- Psychrobacter_pacificensis -------------------------------------------------- Chromohalobacter_marismortui -------------------------------------------------- F -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_sp. -------------------------------------------------- Pseudomonas_putida -------------------------------------------------- Coxiella_burnetii -------------------------------------------------- Methylococcus_capsulatus -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Allochromatium_vinosum -------------------------------------------------- Beggiatoa_sp._1401-13 -------------------------------------------------- Aeromonas_hydrophila -------------------------------------------------- Shewanella_putrefaciens -------------------------------------------------- Citrobacter_freundii -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Klebsiella_pneumoniae -------------------------------------------------- Plesiomonas_shigelloides -------------------------------------------------- Yersinia_pestis -------------------------------------------------- F -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Escherichia_coli_O157:H7 -------------------------------------------------- Escherichia_coli_O157:H7_EDL933 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli_K12 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Salmonella_typhimurium -------------------------------------------------- Serratia_marcescens -------------------------------------------------- Edwardsiella_tarda -------------------------------------------------- Proteus_vulgaris -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- F -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae_(operons_A-F) -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Xanthomonas_albilineans -------------------------------------------------- Xanthomonas_campestris -------------------------------------------------- Xylella_fastidiosa -------------------------------------------------- Dichelobacter_nodosus -------------------------------------------------- Francisella_tularensis -------------------------------------------------- Bordetella_parapertussis -------------------------------------------------- Bordetella_pertussis -------------------------------------------------- Bordetella_bronchiseptica -------------------------------------------------- unidentified_proteobacterium -------------------------------------------------- Burkholderia_mallei -------------------------------------------------- Burkholderia_sp. -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -------------------------------------------------- Comamonas_testosteroni -------------------------------------------------- Desulfovibrio_desulfuricans -------------------------------------------------- Myxococcus_xanthus -------------------------------------------------- Deferribacter_thermophilus -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_hermsii -------------------------------------------------- Spirochaeta_aurantia -------------------------------------------------- Treponema_pallidum_(rRNA_A) -------------------------------------------------- Leptonema_illini -------------------------------------------------- Leptospira_interrogans -------------------------------------------------- Chlamydia_trachomatis_D/UW-3/CX -------------------------------------------------- Chlamydia_trachomatis_L2/434/BU -------------------------------------------------- Chlamydia_muridarum -------------------------------------------------- Chlamydophila_pneumoniae_AR39 -------------------------------------------------- Chlamydophila_pneumoniae -------------------------------------------------- Chlamydophila_pneumoniae_J138 -------------------------------------------------- F -------------------------------------------------- Chlamydophila_psittaci -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- Porphyromonas_gingivalis -------------------------------------------------- Prosthecochloris_vibrioformis -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_sputorum -------------------------------------------------- F -------------------------------------------------- Helicobacter_pylori_J99 -------------------------------------------------- Helicobacter_pylori -------------------------------------------------- Acidobacterium_capsulatum -------------------------------------------------- Holophaga_foetida -------------------------------------------------- Arthrobacter_globiformis -------------------------------------------------- Micrococcus_luteus -------------------------------------------------- Frankia_sp. -------------------------------------------------- Streptomyces_bottropensis -------------------------------------------------- Streptomyces_scabiei -------------------------------------------------- Streptomyces_neyagawaensis -------------------------------------------------- F -------------------------------------------------- Streptomyces_sp. -------------------------------------------------- Streptomyces_acidiscabies -------------------------------------------------- Streptomyces_griseus -------------------------------------------------- Streptomyces_ornatus -------------------------------------------------- Streptomyces_subrutilus -------------------------------------------------- Streptomyces_bikiniensis -------------------------------------------------- Streptomyces_galbus -------------------------------------------------- Streptomyces_hygroscopicus -------------------------------------------------- Streptomyces_lincolnensis -------------------------------------------------- Streptomyces_coelicolor -------------------------------------------------- Streptomyces_tendae -------------------------------------------------- Streptomyces_ambofaciens -------------------------------------------------- Streptomyces_eurythermus -------------------------------------------------- Streptomyces_nodosus -------------------------------------------------- Streptomyces_sampsonii -------------------------------------------------- Streptomyces_glaucescens -------------------------------------------------- Streptomyces_pseudogriseolus -------------------------------------------------- Streptomyces_caelestis -------------------------------------------------- Streptomyces_bluensis -------------------------------------------------- Streptomyces_espinosus -------------------------------------------------- Streptomyces_mashuensis -------------------------------------------------- Streptomyces_rimosus -------------------------------------------------- Streptomyces_limosus -------------------------------------------------- Streptomyces_odorifer -------------------------------------------------- Streptomyces_felleus -------------------------------------------------- Streptomyces_albidoflavus -------------------------------------------------- Streptomyces_gougerotii -------------------------------------------------- Streptomyces_rutgersensis -------------------------------------------------- Streptomyces_intermedius -------------------------------------------------- F -------------------------------------------------- Streptomyces_thermoviolaceus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus -------------------------------------------------- Streptomyces_megasporus -------------------------------------------------- Streptomyces_thermolineatus -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_avium -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides -------------------------------------------------- Rhodococcus_erythropolis -------------------------------------------------- Corynebacterium_diphtheriae -------------------------------------------------- Actinomyces_israelii -------------------------------------------------- Brachyspira_hyodysenteriae -------------------------------------------------- Geotoga_subterranea -------------------------------------------------- Petrotoga_miotherma -------------------------------------------------- Brevinema_andersonii -------------------------------------------------- Herpetosiphon_aurantiacus -------------------------------------------------- F -------------------------------------------------- Aquifex_aeolicus -------------------------------------------------- Aquifex_pyrophilus -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- Thermus_aquaticus -------------------------------------------------- Thermomicrobium_roseum -------------------------------------------------- Pirellula_marina -------------------------------------------------- Pirellula_staleyi -------------------------------------------------- Planctomycetaceae_Schlesner_670 -------------------------------------------------- Gemmata_obscuriglobus -------------------------------------------------- Isosphaera_pallida -------------------------------------------------- Pyrococcus_abyssi -------------------------------------------------- Pyrococcus_horikoshii -------------------------------------------------- Pyrococcus_furiosus -------------------------------------------------- Thermococcus_celer -------------------------------------------------- Archaeoglobus_fulgidus -------------------------------------------------- Nanoarchaeum_equitans -------------------------------------------------- Aeropyrum_pernix_(str._K1) -------------------------------------------------- Pyrodictium_occultum -------------------------------------------------- Thermoproteus_tenax -------------------------------------------------- Sulfolobus_acidocaldarius -------------------------------------------------- Sulfolobus_solfataricus -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum -------------------------------------------------- Methanococcus_vannielii -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -------------------------------------------------- Natronorubrum_bangense -------------------------------------------------- Natronobacterium_innermongoliae -------------------------------------------------- Haloferax_volcanii -------------------------------------------------- Methanospirillum_hungatei -------------------------------------------------- Picrophilus_torridus_DSM_9790 -------------------------------------------------- Thermoplasma_acidophilum -------------------------------------------------- Giardia_ardeae -------------------------------------------------- Giardia_intestinalis -------------------------------------------------- Giardia_muris -------------------------------------------------- Amblyospora_bracteata -------------------------------------------------- Glomus_sp._W3349 -------------------------------------------------- Scutellospora_cerradensis -------------------------------------------------- Glomus_intraradices -------------------------------------------------- Smittium_culisetae -------------------------------------------------- Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus -------------------------------------------------- Tilletia_caries -------------------------------------------------- Mucor_circinelloides_f._lusitanicus -------------------------------------------------- Mucor_racemosus -------------------------------------------------- Rhizopus_oryzae -------------------------------------------------- Mytilus_edulis -------------------------------------------------- Placopecten_magellanicus -------------------------------------------------- Echinococcus_granulosus -------------------------------------------------- Drosophila_melanogaster -------------------------------------------------- Crossodonthina_koreana -------------------------------------------------- Androctonus_australis -------------------------------------------------- Okanagana_utahensis -------------------------------------------------- Artemia_salina -------------------------------------------------- Mus_musculus -------------------------------------------------- Rattus_norvegicus -------------------------------------------------- Homo_sapiens -------------------------------------------------- Oryctolagus_cuniculus -------------------------------------------------- Xenopus_borealis -------------------------------------------------- Xenopus_laevis -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Balamuthia_mandrillaris -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Entamoeba_histolytica -------------------------------------------------- Ichthyophonus_hoferi -------------------------------------------------- Dermocystidium_sp. -------------------------------------------------- Sphaerothecum_destruens -------------------------------------------------- Acanthocoepsis_unguiculata -------------------------------------------------- Diaphanoeca_grandis -------------------------------------------------- Allomyces_macrogynus -------------------------------------------------- Blastocladiella_emersonii -------------------------------------------------- Candida_albicans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Coccidioides_immitis -------------------------------------------------- Leishmania_major -------------------------------------------------- Trypanosoma_cruzi -------------------------------------------------- Trypanosoma_brucei -------------------------------------------------- Pneumocystis_carinii -------------------------------------------------- Cryptococcus_neoformans_var._neoformans -------------------------------------------------- fungal_contaminant_of_QPX_isolate -------------------------------------------------- Ustilago_maydis -------------------------------------------------- Mnemiopsis_leidyi -------------------------------------------------- Tripedalia_cystophora -------------------------------------------------- Microciona_prolifera -------------------------------------------------- Psorospermium_haeckeli -------------------------------------------------- Euglypha_rotunda -------------------------------------------------- Paulinella_chromatophora -------------------------------------------------- Antirrhinum_majus -------------------------------------------------- Sesamum_indicum -------------------------------------------------- Digitalis_grandiflora -------------------------------------------------- Plantago_lanceolata -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Arabidopsis_thaliana -------------------------------------------------- Sinapis_alba -------------------------------------------------- Solanum_tuberosum -------------------------------------------------- Fragaria_x_ananassa -------------------------------------------------- Glycine_max -------------------------------------------------- Oryza_sativa -------------------------------------------------- Zea_mays -------------------------------------------------- F -------------------------------------------------- Genicularia_spirotaenia -------------------------------------------------- F -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- FChlorella'_luteoviridis -------------------------------------------------- Oxytricha_longa -------------------------------------------------- Paraurostyla_weissei -------------------------------------------------- Cyrtohymena_citrina -------------------------------------------------- Gastrostyla_steinii -------------------------------------------------- Pleurotricha_lanceolota -------------------------------------------------- Onychodromus_quadricornutus -------------------------------------------------- Stylonychia_lemnae -------------------------------------------------- Stylonychia_mytilus -------------------------------------------------- Engelmanniella_mobilis -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Uroleptus_gallina -------------------------------------------------- Uroleptus_pisces -------------------------------------------------- Paruroleptus_lepisma -------------------------------------------------- Urostyla_grandis -------------------------------------------------- Balantidium_coli -------------------------------------------------- Euplotes_aediculatus -------------------------------------------------- Tetrahymena_thermophila -------------------------------------------------- Bangia_sp._(Northwest_Territories/NWT) -------------------------------------------------- Bangia_sp._(Virgin_Islands/VIS7) -------------------------------------------------- Erythrotrichia_carnea -------------------------------------------------- Rhodochaete_parvula -------------------------------------------------- Compsopogon_coeruleus -------------------------------------------------- Porphyridium_aerugineum -------------------------------------------------- Rhodella_maculata -------------------------------------------------- Aulacoseira_ambigua -------------------------------------------------- Aulacoseira_baicalensis -------------------------------------------------- Stephanopyxis_nipponica -------------------------------------------------- Coscinodiscus_radiatus -------------------------------------------------- Corethron_criophilum -------------------------------------------------- Amphora_cf._capitellata -------------------------------------------------- Sellaphora_pupula_f._capitata -------------------------------------------------- Thalassiosira_antarctica -------------------------------------------------- Encyonema_triangulatum -------------------------------------------------- Achnanthes_bongranii -------------------------------------------------- F -------------------------------------------------- Diatoma_tenue -------------------------------------------------- Grammatophora_marina -------------------------------------------------- Thalassionema_sp._p474 -------------------------------------------------- Rhaphoneis_belgicae -------------------------------------------------- Undatella_sp._p446 -------------------------------------------------- Cymatosira_belgica -------------------------------------------------- Odontella_sinensis -------------------------------------------------- Ditylum_brightwellii -------------------------------------------------- Lithodesmium_undulatum -------------------------------------------------- Thalassiosira_eccentrica -------------------------------------------------- Thalassiosira_pseudonana -------------------------------------------------- Skeletonema_costatum -------------------------------------------------- Pleurosira_cf._laevis -------------------------------------------------- Lauderia_borealis -------------------------------------------------- F -------------------------------------------------- Bolidomonas_mediterranea -------------------------------------------------- Bolidomonas_pacifica -------------------------------------------------- Labyrinthuloides_minuta -------------------------------------------------- Leptocylindrus_danicus -------------------------------------------------- Chaetoceros_sp. -------------------------------------------------- Aphanomyces_invadans -------------------------------------------------- Lagenidium_giganteum -------------------------------------------------- Melosira_varians -------------------------------------------------- Blastocystis_hominis -------------------------------------------------- Perkinsus_marinus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Alexandrium_fundyense -------------------------------------------------- Babesia_bigemina -------------------------------------------------- Babesia_canis -------------------------------------------------- Babesia_sp._'Oklahoma_dog' -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_rodhaini -------------------------------------------------- Babesia_gibsoni -------------------------------------------------- Babesia_bovis -------------------------------------------------- Jakoba_libera -------------------------------------------------- Reclinomonas_americana -------------------------------------------------- Bonamia_ostreae -------------------------------------------------- Audouinella_dasyae -------------------------------------------------- Audouinella_hermannii -------------------------------------------------- Nemalion_helminthoides -------------------------------------------------- Batrachospermum_gelatinosum -------------------------------------------------- Nemalionopsis_tortuosa -------------------------------------------------- Thorea_hispida -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Nemalionopsis_shawii -------------------------------------------------- Balbiania_investiens -------------------------------------------------- Batrachospermum_macrosporum -------------------------------------------------- Ahnfeltia_plicata -------------------------------------------------- Corallina_officinalis -------------------------------------------------- Rhodogorgon_carriebowensis -------------------------------------------------- Bonnemaisonia_hamifera -------------------------------------------------- Gelidium_vagum -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Halymenia_plana -------------------------------------------------- Rhodymenia_leptophylla -------------------------------------------------- Plocamiocolax_pulvinata -------------------------------------------------- Ceramium_rubrum -------------------------------------------------- Gracilariopsis_sp. -------------------------------------------------- Bostrychia_moritziana -------------------------------------------------- Hildenbrandia_rubra -------------------------------------------------- Dixonielloa_grisea -------------------------------------------------- Naegleria_fowleri -------------------------------------------------- Naegleria_gruberi -------------------------------------------------- Hexamita_sp. -------------------------------------------------- Tritrichomonas_foetus -------------------------------------------------- Amblyospora_khaliulini -------------------------------------------------- Edhazardia_aedis -------------------------------------------------- Amblyospora_connecticus -------------------------------------------------- Intrapredatorus_barri -------------------------------------------------- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. -------------------------------------------------- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii -------------------------------------------------- Weiseria_palustris -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani -------------------------------------------------- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae -------------------------------------------------- Thelohania_solenopsae -------------------------------------------------- Visvesvaria_acridophagus -------------------------------------------------- Bacillidium_sp. -------------------------------------------------- Pseudonosema_cristatellae -------------------------------------------------- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum -------------------------------------------------- Pleistophora_mirandellae -------------------------------------------------- Trachipleistophora_hominis -------------------------------------------------- Vavraia_culicis -------------------------------------------------- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii -------------------------------------------------- F -------------------------------------------------- Dictyocoela_gammarellum -------------------------------------------------- Microsporidium_prosopium -------------------------------------------------- Antonospora_scoticae -------------------------------------------------- Paranosema_whitei -------------------------------------------------- #=GC SS_cons .................................................. Cynomorium_coccineum -------------------------------------------------- Cytinus_ruber -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Spinacia_oleracea -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Ricinus_communis -------------------------------------------------- F -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Pyramimonas_parkeae -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Pilostyles_thurberi -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Neurospora_crassa ACUGUUCAAAUACUUGACACAUGCUAAUCGAACGUUUAAUUUUUGGCCUA Podospora_anserina -------------------------------------------------- Penicillium_chrysogenum -------------------------------------------------- Emericella_nidulans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Williopsis_saturnus_var._mrakii -------------------------------------------------- Pedinomonas_minor -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Babesia_bovis -------------------------------------------------- Tetrahymena_pyriformis -------------------------------------------------- Suillus_sinuspaulianus -------------------------------------------------- Paramecium_tetraurelia -------------------------------------------------- Dictyostelium_discoideum -------------------------------------------------- Physarum_polycephalum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Prototheca_wickerhamii -------------------------------------------------- Hydnora_africana -------------------------------------------------- Codium_fragile -------------------------------------------------- Caulerpa_sertularioides -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Cryptomonas_sp. -------------------------------------------------- Palmaria_palmata -------------------------------------------------- Heterosigma_akashiwo -------------------------------------------------- Skeletonema_pseudocostatum -------------------------------------------------- Pylaiella_littoralis -------------------------------------------------- Cyanidium_caldarium -------------------------------------------------- Emiliania_huxleyi -------------------------------------------------- Euglena_gracilis -------------------------------------------------- Anabaena_sp. -------------------------------------------------- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -------------------------------------------------- F -------------------------------------------------- Oscillatoria_agardhii -------------------------------------------------- Pleurocapsa_sp. -------------------------------------------------- Microcystis_aeruginosa -------------------------------------------------- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos -------------------------------------------------- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Bacillus_anthracis -------------------------------------------------- Bacillus_cereus -------------------------------------------------- Enterococcus_faecalis -------------------------------------------------- Enterococcus_faecium -------------------------------------------------- Listeria_monocytogenes -------------------------------------------------- Bacillus_subtilis -------------------------------------------------- Bacillus_subtilis_A -------------------------------------------------- Bacillus_halodurans -------------------------------------------------- Staphylococcus_aureus -------------------------------------------------- Staphylococcus_aureus_N315 -------------------------------------------------- Lactococcus_lactis_subsp._lactis -------------------------------------------------- Streptococcus_pyogenes -------------------------------------------------- Lactobacillus_acidophilus -------------------------------------------------- Mycoplasma_capricolum -------------------------------------------------- Mycoplasma_mycoides -------------------------------------------------- Erysipelothrix_rhusiopathiae_(alpha-P15) -------------------------------------------------- Clostridium_innocuum -------------------------------------------------- Mycoplasma_genitalium -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_pneumoniae -------------------------------------------------- Mycoplasma_gallisepticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Ureaplasma_urealyticum -------------------------------------------------- Mycoplasma_hyopneumoniae -------------------------------------------------- Fusobacterium_necrophorum -------------------------------------------------- Fusobacterium_nucleatum_subsp._nucleatum -------------------------------------------------- Streptobacillus_moniliformis -------------------------------------------------- Clostridium_botulinum_type_f -------------------------------------------------- Clostridium_tetani -------------------------------------------------- Clostridium_perfringens -------------------------------------------------- Clostridium_difficile -------------------------------------------------- Eubacterium_brachy -------------------------------------------------- Epulopiscium_sp. -------------------------------------------------- Heliobacterium_chlorum -------------------------------------------------- Glycine_max -------------------------------------------------- Oenothera_berteroana -------------------------------------------------- Secale_cereale -------------------------------------------------- Triticum_aestivum -------------------------------------------------- Zea_mays -------------------------------------------------- Marchantia_polymorpha -------------------------------------------------- Nephroselmis_olivacea -------------------------------------------------- Gluconacetobacter_liquefaciens -------------------------------------------------- Bradyrhizobium_japonicum -------------------------------------------------- Rhodoblastus_acidophilus -------------------------------------------------- Azorhizobium_caulinodans -------------------------------------------------- Bartonella_quintana -------------------------------------------------- Mesorhizobium_loti -------------------------------------------------- Agrobacterium_tumefaciens -------------------------------------------------- Bartonella_bacilliformis -------------------------------------------------- Bartonella_henselae -------------------------------------------------- Brucella_melitensis -------------------------------------------------- Rhodobium_orientis -------------------------------------------------- F -------------------------------------------------- Rickettsia_bellii -------------------------------------------------- Rickettsia_felis_URRWXCal2 -------------------------------------------------- Rickettsia_prowazekii -------------------------------------------------- Rickettsia_prowazekii_(str._Madrid_E) -------------------------------------------------- Rickettsia_rickettsii -------------------------------------------------- Acinetobacter_calcoaceticus -------------------------------------------------- Psychrobacter_pacificensis -------------------------------------------------- Chromohalobacter_marismortui -------------------------------------------------- F -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_aeruginosa -------------------------------------------------- Pseudomonas_sp. -------------------------------------------------- Pseudomonas_putida -------------------------------------------------- Coxiella_burnetii -------------------------------------------------- Methylococcus_capsulatus -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Legionella_pneumophila -------------------------------------------------- Allochromatium_vinosum -------------------------------------------------- Beggiatoa_sp._1401-13 -------------------------------------------------- Aeromonas_hydrophila -------------------------------------------------- Shewanella_putrefaciens -------------------------------------------------- Citrobacter_freundii -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Klebsiella_pneumoniae -------------------------------------------------- Plesiomonas_shigelloides -------------------------------------------------- Yersinia_pestis -------------------------------------------------- F -------------------------------------------------- Shigella_dysenteriae -------------------------------------------------- Escherichia_coli_O157:H7 -------------------------------------------------- Escherichia_coli_O157:H7_EDL933 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli_K12 -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Escherichia_coli -------------------------------------------------- Salmonella_typhimurium -------------------------------------------------- Serratia_marcescens -------------------------------------------------- Edwardsiella_tarda -------------------------------------------------- Proteus_vulgaris -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- Vibrio_cholerae -------------------------------------------------- F -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae -------------------------------------------------- Haemophilus_influenzae_(operons_A-F) -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Pasteurella_multocida -------------------------------------------------- Xanthomonas_albilineans -------------------------------------------------- Xanthomonas_campestris -------------------------------------------------- Xylella_fastidiosa -------------------------------------------------- Dichelobacter_nodosus -------------------------------------------------- Francisella_tularensis -------------------------------------------------- Bordetella_parapertussis -------------------------------------------------- Bordetella_pertussis -------------------------------------------------- Bordetella_bronchiseptica -------------------------------------------------- unidentified_proteobacterium -------------------------------------------------- Burkholderia_mallei -------------------------------------------------- Burkholderia_sp. -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -------------------------------------------------- Comamonas_testosteroni -------------------------------------------------- Desulfovibrio_desulfuricans -------------------------------------------------- Myxococcus_xanthus -------------------------------------------------- Deferribacter_thermophilus -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_burgdorferi -------------------------------------------------- Borrelia_hermsii -------------------------------------------------- Spirochaeta_aurantia -------------------------------------------------- Treponema_pallidum_(rRNA_A) -------------------------------------------------- Leptonema_illini -------------------------------------------------- Leptospira_interrogans -------------------------------------------------- Chlamydia_trachomatis_D/UW-3/CX -------------------------------------------------- Chlamydia_trachomatis_L2/434/BU -------------------------------------------------- Chlamydia_muridarum -------------------------------------------------- Chlamydophila_pneumoniae_AR39 -------------------------------------------------- Chlamydophila_pneumoniae -------------------------------------------------- Chlamydophila_pneumoniae_J138 -------------------------------------------------- F -------------------------------------------------- Chlamydophila_psittaci -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Deinococcus_radiodurans -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- Porphyromonas_gingivalis -------------------------------------------------- Prosthecochloris_vibrioformis -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_jejuni -------------------------------------------------- Campylobacter_sputorum -------------------------------------------------- F -------------------------------------------------- Helicobacter_pylori_J99 -------------------------------------------------- Helicobacter_pylori -------------------------------------------------- Acidobacterium_capsulatum -------------------------------------------------- Holophaga_foetida -------------------------------------------------- Arthrobacter_globiformis -------------------------------------------------- Micrococcus_luteus -------------------------------------------------- Frankia_sp. -------------------------------------------------- Streptomyces_bottropensis -------------------------------------------------- Streptomyces_scabiei -------------------------------------------------- Streptomyces_neyagawaensis -------------------------------------------------- F -------------------------------------------------- Streptomyces_sp. -------------------------------------------------- Streptomyces_acidiscabies -------------------------------------------------- Streptomyces_griseus -------------------------------------------------- Streptomyces_ornatus -------------------------------------------------- Streptomyces_subrutilus -------------------------------------------------- Streptomyces_bikiniensis -------------------------------------------------- Streptomyces_galbus -------------------------------------------------- Streptomyces_hygroscopicus -------------------------------------------------- Streptomyces_lincolnensis -------------------------------------------------- Streptomyces_coelicolor -------------------------------------------------- Streptomyces_tendae -------------------------------------------------- Streptomyces_ambofaciens -------------------------------------------------- Streptomyces_eurythermus -------------------------------------------------- Streptomyces_nodosus -------------------------------------------------- Streptomyces_sampsonii -------------------------------------------------- Streptomyces_glaucescens -------------------------------------------------- Streptomyces_pseudogriseolus -------------------------------------------------- Streptomyces_caelestis -------------------------------------------------- Streptomyces_bluensis -------------------------------------------------- Streptomyces_espinosus -------------------------------------------------- Streptomyces_mashuensis -------------------------------------------------- Streptomyces_rimosus -------------------------------------------------- Streptomyces_limosus -------------------------------------------------- Streptomyces_odorifer -------------------------------------------------- Streptomyces_felleus -------------------------------------------------- Streptomyces_albidoflavus -------------------------------------------------- Streptomyces_gougerotii -------------------------------------------------- Streptomyces_rutgersensis -------------------------------------------------- Streptomyces_intermedius -------------------------------------------------- F -------------------------------------------------- Streptomyces_thermoviolaceus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus -------------------------------------------------- Streptomyces_megasporus -------------------------------------------------- Streptomyces_thermolineatus -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_tuberculosis -------------------------------------------------- Mycobacterium_avium -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- Mycobacterium_leprae -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides -------------------------------------------------- Rhodococcus_erythropolis -------------------------------------------------- Corynebacterium_diphtheriae -------------------------------------------------- Actinomyces_israelii -------------------------------------------------- Brachyspira_hyodysenteriae -------------------------------------------------- Geotoga_subterranea -------------------------------------------------- Petrotoga_miotherma -------------------------------------------------- Brevinema_andersonii -------------------------------------------------- Herpetosiphon_aurantiacus -------------------------------------------------- F -------------------------------------------------- Aquifex_aeolicus -------------------------------------------------- Aquifex_pyrophilus -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- Thermotoga_maritima -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------------------------------------------------- Thermus_aquaticus -------------------------------------------------- Thermomicrobium_roseum -------------------------------------------------- Pirellula_marina -------------------------------------------------- Pirellula_staleyi -------------------------------------------------- Planctomycetaceae_Schlesner_670 -------------------------------------------------- Gemmata_obscuriglobus -------------------------------------------------- Isosphaera_pallida -------------------------------------------------- Pyrococcus_abyssi -------------------------------------------------- Pyrococcus_horikoshii -------------------------------------------------- Pyrococcus_furiosus -------------------------------------------------- Thermococcus_celer -------------------------------------------------- Archaeoglobus_fulgidus -------------------------------------------------- Nanoarchaeum_equitans -------------------------------------------------- Aeropyrum_pernix_(str._K1) -------------------------------------------------- Pyrodictium_occultum -------------------------------------------------- Thermoproteus_tenax -------------------------------------------------- Sulfolobus_acidocaldarius -------------------------------------------------- Sulfolobus_solfataricus -------------------------------------------------- Bacteroides_fragilis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum -------------------------------------------------- Methanococcus_vannielii -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -------------------------------------------------- Natronorubrum_bangense -------------------------------------------------- Natronobacterium_innermongoliae -------------------------------------------------- Haloferax_volcanii -------------------------------------------------- Methanospirillum_hungatei -------------------------------------------------- Picrophilus_torridus_DSM_9790 -------------------------------------------------- Thermoplasma_acidophilum -------------------------------------------------- Giardia_ardeae -------------------------------------------------- Giardia_intestinalis -------------------------------------------------- Giardia_muris -------------------------------------------------- Amblyospora_bracteata -------------------------------------------------- Glomus_sp._W3349 -------------------------------------------------- Scutellospora_cerradensis -------------------------------------------------- Glomus_intraradices -------------------------------------------------- Smittium_culisetae -------------------------------------------------- Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus -------------------------------------------------- Tilletia_caries -------------------------------------------------- Mucor_circinelloides_f._lusitanicus -------------------------------------------------- Mucor_racemosus -------------------------------------------------- Rhizopus_oryzae -------------------------------------------------- Mytilus_edulis -------------------------------------------------- Placopecten_magellanicus -------------------------------------------------- Echinococcus_granulosus -------------------------------------------------- Drosophila_melanogaster -------------------------------------------------- Crossodonthina_koreana -------------------------------------------------- Androctonus_australis -------------------------------------------------- Okanagana_utahensis -------------------------------------------------- Artemia_salina -------------------------------------------------- Mus_musculus -------------------------------------------------- Rattus_norvegicus -------------------------------------------------- Homo_sapiens -------------------------------------------------- Oryctolagus_cuniculus -------------------------------------------------- Xenopus_borealis -------------------------------------------------- Xenopus_laevis -------------------------------------------------- Acanthamoeba_castellanii -------------------------------------------------- Balamuthia_mandrillaris -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_falciparum -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Plasmodium_vivax -------------------------------------------------- Entamoeba_histolytica -------------------------------------------------- Ichthyophonus_hoferi -------------------------------------------------- Dermocystidium_sp. -------------------------------------------------- Sphaerothecum_destruens -------------------------------------------------- Acanthocoepsis_unguiculata -------------------------------------------------- Diaphanoeca_grandis -------------------------------------------------- Allomyces_macrogynus -------------------------------------------------- Blastocladiella_emersonii -------------------------------------------------- Candida_albicans -------------------------------------------------- Saccharomyces_cerevisiae -------------------------------------------------- Neurospora_crassa -------------------------------------------------- Podospora_anserina -------------------------------------------------- Coccidioides_immitis -------------------------------------------------- Leishmania_major -------------------------------------------------- Trypanosoma_cruzi -------------------------------------------------- Trypanosoma_brucei -------------------------------------------------- Pneumocystis_carinii -------------------------------------------------- Cryptococcus_neoformans_var._neoformans -------------------------------------------------- fungal_contaminant_of_QPX_isolate -------------------------------------------------- Ustilago_maydis -------------------------------------------------- Mnemiopsis_leidyi -------------------------------------------------- Tripedalia_cystophora -------------------------------------------------- Microciona_prolifera -------------------------------------------------- Psorospermium_haeckeli -------------------------------------------------- Euglypha_rotunda -------------------------------------------------- Paulinella_chromatophora -------------------------------------------------- Antirrhinum_majus -------------------------------------------------- Sesamum_indicum -------------------------------------------------- Digitalis_grandiflora -------------------------------------------------- Plantago_lanceolata -------------------------------------------------- Nicotiana_tabacum -------------------------------------------------- Arabidopsis_thaliana -------------------------------------------------- Sinapis_alba -------------------------------------------------- Solanum_tuberosum -------------------------------------------------- Fragaria_x_ananassa -------------------------------------------------- Glycine_max -------------------------------------------------- Oryza_sativa -------------------------------------------------- Zea_mays -------------------------------------------------- F -------------------------------------------------- Genicularia_spirotaenia -------------------------------------------------- F -------------------------------------------------- Cyanophora_paradoxa -------------------------------------------------- Glaucocystis_nostochinearum -------------------------------------------------- Gloeochaete_wittrockiana -------------------------------------------------- FChlorella'_luteoviridis -------------------------------------------------- Oxytricha_longa -------------------------------------------------- Paraurostyla_weissei -------------------------------------------------- Cyrtohymena_citrina -------------------------------------------------- Gastrostyla_steinii -------------------------------------------------- Pleurotricha_lanceolota -------------------------------------------------- Onychodromus_quadricornutus -------------------------------------------------- Stylonychia_lemnae -------------------------------------------------- Stylonychia_mytilus -------------------------------------------------- Engelmanniella_mobilis -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Oxytricha_granulifera -------------------------------------------------- Uroleptus_gallina -------------------------------------------------- Uroleptus_pisces -------------------------------------------------- Paruroleptus_lepisma -------------------------------------------------- Urostyla_grandis -------------------------------------------------- Balantidium_coli -------------------------------------------------- Euplotes_aediculatus -------------------------------------------------- Tetrahymena_thermophila -------------------------------------------------- Bangia_sp._(Northwest_Territories/NWT) -------------------------------------------------- Bangia_sp._(Virgin_Islands/VIS7) -------------------------------------------------- Erythrotrichia_carnea -------------------------------------------------- Rhodochaete_parvula -------------------------------------------------- Compsopogon_coeruleus -------------------------------------------------- Porphyridium_aerugineum -------------------------------------------------- Rhodella_maculata -------------------------------------------------- Aulacoseira_ambigua -------------------------------------------------- Aulacoseira_baicalensis -------------------------------------------------- Stephanopyxis_nipponica -------------------------------------------------- Coscinodiscus_radiatus -------------------------------------------------- Corethron_criophilum -------------------------------------------------- Amphora_cf._capitellata -------------------------------------------------- Sellaphora_pupula_f._capitata -------------------------------------------------- Thalassiosira_antarctica -------------------------------------------------- Encyonema_triangulatum -------------------------------------------------- Achnanthes_bongranii -------------------------------------------------- F -------------------------------------------------- Diatoma_tenue -------------------------------------------------- Grammatophora_marina -------------------------------------------------- Thalassionema_sp._p474 -------------------------------------------------- Rhaphoneis_belgicae -------------------------------------------------- Undatella_sp._p446 -------------------------------------------------- Cymatosira_belgica -------------------------------------------------- Odontella_sinensis -------------------------------------------------- Ditylum_brightwellii -------------------------------------------------- Lithodesmium_undulatum -------------------------------------------------- Thalassiosira_eccentrica -------------------------------------------------- Thalassiosira_pseudonana -------------------------------------------------- Skeletonema_costatum -------------------------------------------------- Pleurosira_cf._laevis -------------------------------------------------- Lauderia_borealis -------------------------------------------------- F -------------------------------------------------- Bolidomonas_mediterranea -------------------------------------------------- Bolidomonas_pacifica -------------------------------------------------- Labyrinthuloides_minuta -------------------------------------------------- Leptocylindrus_danicus -------------------------------------------------- Chaetoceros_sp. -------------------------------------------------- Aphanomyces_invadans -------------------------------------------------- Lagenidium_giganteum -------------------------------------------------- Melosira_varians -------------------------------------------------- Blastocystis_hominis -------------------------------------------------- Perkinsus_marinus -------------------------------------------------- Toxoplasma_gondii -------------------------------------------------- Alexandrium_fundyense -------------------------------------------------- Babesia_bigemina -------------------------------------------------- Babesia_canis -------------------------------------------------- Babesia_sp._'Oklahoma_dog' -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_microti -------------------------------------------------- Babesia_rodhaini -------------------------------------------------- Babesia_gibsoni -------------------------------------------------- Babesia_bovis -------------------------------------------------- Jakoba_libera -------------------------------------------------- Reclinomonas_americana -------------------------------------------------- Bonamia_ostreae -------------------------------------------------- Audouinella_dasyae -------------------------------------------------- Audouinella_hermannii -------------------------------------------------- Nemalion_helminthoides -------------------------------------------------- Batrachospermum_gelatinosum -------------------------------------------------- Nemalionopsis_tortuosa -------------------------------------------------- Thorea_hispida -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Thorea_violacea -------------------------------------------------- Nemalionopsis_shawii -------------------------------------------------- Balbiania_investiens -------------------------------------------------- Batrachospermum_macrosporum -------------------------------------------------- Ahnfeltia_plicata -------------------------------------------------- Corallina_officinalis -------------------------------------------------- Rhodogorgon_carriebowensis -------------------------------------------------- Bonnemaisonia_hamifera -------------------------------------------------- Gelidium_vagum -------------------------------------------------- Chondrus_crispus -------------------------------------------------- Halymenia_plana -------------------------------------------------- Rhodymenia_leptophylla -------------------------------------------------- Plocamiocolax_pulvinata -------------------------------------------------- Ceramium_rubrum -------------------------------------------------- Gracilariopsis_sp. -------------------------------------------------- Bostrychia_moritziana -------------------------------------------------- Hildenbrandia_rubra -------------------------------------------------- Dixonielloa_grisea -------------------------------------------------- Naegleria_fowleri -------------------------------------------------- Naegleria_gruberi -------------------------------------------------- Hexamita_sp. -------------------------------------------------- Tritrichomonas_foetus -------------------------------------------------- Amblyospora_khaliulini -------------------------------------------------- Edhazardia_aedis -------------------------------------------------- Amblyospora_connecticus -------------------------------------------------- Intrapredatorus_barri -------------------------------------------------- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. -------------------------------------------------- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii -------------------------------------------------- Weiseria_palustris -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani -------------------------------------------------- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae -------------------------------------------------- Thelohania_solenopsae -------------------------------------------------- Visvesvaria_acridophagus -------------------------------------------------- Bacillidium_sp. -------------------------------------------------- Pseudonosema_cristatellae -------------------------------------------------- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum -------------------------------------------------- Pleistophora_mirandellae -------------------------------------------------- Trachipleistophora_hominis -------------------------------------------------- Vavraia_culicis -------------------------------------------------- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii -------------------------------------------------- F -------------------------------------------------- Dictyocoela_gammarellum -------------------------------------------------- Microsporidium_prosopium -------------------------------------------------- Antonospora_scoticae -------------------------------------------------- Paranosema_whitei -------------------------------------------------- #=GC SS_cons .................................................. Cynomorium_coccineum ----------------------UCUCAUGGA-G-A-G---------UU-C Cytinus_ruber ----------------------UCUCAUGGA-G-A-G---------UU-C Nicotiana_tabacum ----------------------UCUCAUGGA-G-A-G---------UU-C Spinacia_oleracea ----------------------UCUCAUGGA-G-A-G---------UU-C Zea_mays -----------------------CUCAUGGA-G-A-G---------UU-C Marchantia_polymorpha ----------------------UCUCAUGGA-G-A-G---------UU-U Ricinus_communis -------------------UGCUCUGACCGU---------------GU-U F -------------------UGCCUGCAGAGA-G-------------UU-U Prototheca_wickerhamii -------------------UGUGAAAACGAA-G-A-G---------UU-U Pedinomonas_minor ----------------------AUUUUUGGA-G-A-G---------UU-U Nephroselmis_olivacea ----------------------UGCUAUGGA-G-A-G---------UU-U Pyramimonas_parkeae -------------------UGCUCUGACCGUGU-U-G------------A Chlamydomonas_reinhardtii ----------------------AUCCAUGGA-G-A-G---------UU-U Acanthamoeba_castellanii -----AAUUCCAUUACUUGUAUAAACAAUCG-U-U-G---G-----GUUU Pilostyles_thurberi -------------------UGCUCUGACCGU------------------- Chondrus_crispus -----A-------------UAUAAUAAAAGA-----G---------UU-U Toxoplasma_gondii -----A-------------AAUUAUUACGAG---------------UU-U Neurospora_crassa AGAAAG-------------GGGUUUCAUCGU---G-G------------C Podospora_anserina -----C-------------UUUAACCAAAGU-U-G-A---------GU-U Penicillium_chrysogenum -----A-------------AAAUAGAGAGUU-U-G-A------------U Emericella_nidulans -----A-------------AAAUUUUGAGUU-U-G-A------------U Saccharomyces_cerevisiae --------------------AGUAAAAAAUU-U-A-----------UA-A Williopsis_saturnus_var._mrakii -----G-------------AAUUAUAAAAUA-U-A-----------GA-G Pedinomonas_minor ----------------------UAAAUUUGG-C-U-C------------U Plasmodium_falciparum -----A-------------UUGCGAGUUUGA-U-C-C------------- Babesia_bovis -----C-------------UGACGAGUUUGA-U-C-C------------- Tetrahymena_pyriformis -----A-------------UCAAAAAAUUUA-U-U-G---A-----GUGU Suillus_sinuspaulianus -----A-------------UAAGAUACCCUG-U-A------------G-U Paramecium_tetraurelia -----G-------------UAAGAAUUCUUU-U-U-U---AGGA--GUGU Dictyostelium_discoideum ---------------------AAGAAAAAAA-U-G-----A-----GUUU Physarum_polycephalum -----C-------------AGUCAAGGGAAA-U-C-C-----------UA Pylaiella_littoralis -----A-------------AAAUGAGUUUGA-U-C-C---U--------- Prototheca_wickerhamii ------------------------AAUUAUA-U-U-G---A-----GUUU Hydnora_africana -----A-------------UGGAGAGUUCGA-U-C-C---U--------- Codium_fragile -----U-------------GGAGAGGUUUGA-U-C-C---U--------- Caulerpa_sertularioides -----C-------------UGGAGAGUUUGA-U-C-C---U--------- F -----G-------------UGUUGAGAAUAG---C-U------------- F -----U-------------AACACAUGCAAG-U-C-G---G-----A-CG Glaucocystis_nostochinearum -----G-------------CAGAGAGUUUGA-U-C-C---U--------- Gloeochaete_wittrockiana -----G-------------CAGAGAGUUUGA-U-C-C---U--------- Cyanophora_paradoxa -----G-------------CAGAGAGUUUGA-U-C-C---U--------- Cyanophora_paradoxa -----A-------------UGGAGAGUUUGA-U-C-C---U--------- Cryptomonas_sp. -----A-------------UGGAGAGUUUGA-U-C-C---U--------- Palmaria_palmata -----A-------------UGGAGAGUUUGA-U-C-C---U--------- Heterosigma_akashiwo -----A-------------UUGAGAGUUUGA-U-C-C---U--------- Skeletonema_pseudocostatum -----C-------------UUUAAAGUUUGA-U-C-U---U--------- Pylaiella_littoralis -----A-------------UCGAGAGUUUGA-U-C-C---U--------- Cyanidium_caldarium -----A-------------UGGAGAGUUUGA-U-C-C---U--------- Emiliania_huxleyi -----G-------------CUUAGAGUUUGA-U-C-C---U--------- Euglena_gracilis -----A-------------UGACGAGUUUGA-U-C-C---U-------UG Anabaena_sp. -----A-------------CGGAGAGUUUGA-U-C-C---U--------- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -----A-------------UGGAGAGUUUGA-U-C-C---U--------- F -------------------------------------------------- Oscillatoria_agardhii -----G-------------UGUUGAGAAU-A-U-C--------------- Pleurocapsa_sp. -----G-------------UGUUGAGAAU-A-U-C--------------- Microcystis_aeruginosa -----G-------------UGUUGAGAAU-A-U-C--------------- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos -----G-------------UAAUGGGUUUGA-U-A--------------- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae -----G-------------UGUUGAGAAU-A-U-C--------------- Streptococcus_pyogenes -----G-------------UGUUGAGAAU-A-U-C--------------- Bacillus_anthracis -----U-------------UGGAGAGUUUGA-U-C-C---U--------- Bacillus_cereus -----U-------------UGGAGAGUUUGA-U-C-C---U--------- Enterococcus_faecalis -------------------UGCUCUGACCGU-G-U-U-----------GA Enterococcus_faecium -----G-------------UGUUGAGAAU-A-U-C--------------- Listeria_monocytogenes -----A-------------AAGAGAGUUUGA-U-C-C---U--------- Bacillus_subtilis -----U-------------CGGAGAGUUUGA-U-C-C---U--------- Bacillus_subtilis_A -----U-------------CGGAGAGUUUGA-U-C-C---U--------- Bacillus_halodurans -----A-------------UGGAGAGUUUGA-U-C-C---U--------- Staphylococcus_aureus -----A-------------UGGAGAGUUUGA-U-C-C---U--------- Staphylococcus_aureus_N315 -----A-------------UGGAGAGUUUGA-U-C-C---U--------- Lactococcus_lactis_subsp._lactis -----U-------------UUGAGAGUUUGA-U-C-C---U--------- Streptococcus_pyogenes -----A-------------AAGAGAGUUUGA-U-C-C---U--------- Lactobacillus_acidophilus -----A-------------ACGAGAGUUUGA-U-C-C---U--------- Mycoplasma_capricolum -----A-------------AUGAGAGUUUGA-U-C-C---U--------- Mycoplasma_mycoides -----A-------------AUGAGAGUUUGA-U-C-----C--------- Erysipelothrix_rhusiopathiae_(alpha-P15) -----A-------------UGGAGAGUUUGA-U-C-C---U--------- Clostridium_innocuum -----A-------------UGGAGAGUUUGA-U-C-C---U--------- Mycoplasma_genitalium -----U-------------CUGAGAGUUUGA-U-C-C---U--------- Mycoplasma_pneumoniae -----U-------------CUGAGAGUUUGA-U-C-C---U--------- Mycoplasma_pneumoniae -----U-------------CUGAGAGUUUGA-U-C-C---U--------- Mycoplasma_gallisepticum -----U-------------CUGAGAGUUUGA-U-C-C---U--------- Ureaplasma_urealyticum -----------------------UGCUCUGA-C-C-G---U-----GUUG Ureaplasma_urealyticum -----U-------------UAAAGAGUUUGA-U-C-C---U--------- Mycoplasma_hyopneumoniae -----C-------------AUGAGAGUUUGA-U-C-C---U--------- Fusobacterium_necrophorum -----U-------------CUGAAGGUUUGA-U-C--------------- Fusobacterium_nucleatum_subsp._nucleatum -----A-------------CGAAGAGUUUGA-U-C-C---U--------- Streptobacillus_moniliformis -----U-------------CUGAGAGUUUGA-U-C-C---U--------- Clostridium_botulinum_type_f -----U-------------CUGACCGUGUUA-U-C-C---U--------- Clostridium_tetani -----U-------------CUGAGAGUUUGA-U-C-C---U--------- Clostridium_perfringens -----A-------------UUGAGAGUUUGA-U-C-C---U--------- Clostridium_difficile -----U-------------CUGAGAGUUUGA-U-C-C---U--------- Eubacterium_brachy -----G-------------AGAAGAGUUUGA-U-C-C---U--------- Epulopiscium_sp. -----G-------------UGUUGAGAAU-A-U-C--------------- Heliobacterium_chlorum -----U-------------CUGACCGUGUGA-U-C-C---U--------- Glycine_max -----A-------------AUAAGAGUUUGA-U-C-C---U--------- Oenothera_berteroana -----A-------------AGAAGAGUUUGA-U-C-C---U--------- Secale_cereale -----A-------------AUCUGAGUUUGA-U-C-C---U--------- Triticum_aestivum -----A-------------AUCUGAGUUUGA-U-C-C---U--------- Zea_mays -----A-------------AUCUGAGUUUGA-U-C-C---U--------- Marchantia_polymorpha -----A-------------AAAAGAGUUUGA-U-C-----C--------- Nephroselmis_olivacea -----C-------------GUAAGAGUUUGA-U-C-C---U--------- Gluconacetobacter_liquefaciens -----U-------------CUGAGAGUUUGA-U-C--------------- Bradyrhizobium_japonicum -----C-------------UUGAGAGUUUGA-U-C-C---U--------- Rhodoblastus_acidophilus -----C-------------UUGAGAGUUUGA-U-C-C---U--------- Azorhizobium_caulinodans -----U-------------CUGACCGUUUGA-U-C-C---U--------- Bartonella_quintana -----U-------------AUGAGAGUUUGA-U-C-C---U--------- Mesorhizobium_loti -----C-------------UUGAGAGUUUGA-U-C-C---U--------- Agrobacterium_tumefaciens -----C-------------UUGAGAGUUUGA-U-C-C---U--------- Bartonella_bacilliformis -----G-------------UGUUGAGAAU-A-U-C--------------- Bartonella_henselae -----G-------------UGUUGAGAAU-A---C-U------------- Brucella_melitensis -----G-------------UGUUGAGAAU-A-U-C--------------- Rhodobium_orientis -----G-------------UGUUGAGAAU-A-U-C--------------- F -------------------------------------------------- Rickettsia_bellii -----C-------------UUGAGAGUUUGA-U-C-C---U--------- Rickettsia_felis_URRWXCal2 -----C-------------UUGAGAGUUUGA-U-C-C---U--------- Rickettsia_prowazekii -----C-------------UUGAGAGUUUGA-U-C-C---U--------- Rickettsia_prowazekii_(str._Madrid_E) -----C-------------UUGAGAGUUUGA-U-C-C---U--------- Rickettsia_rickettsii -----C-------------UGACCGUGUUGA---C-C---U--------- Acinetobacter_calcoaceticus -----C-------------UGAAGAGUUUGA-U-C-A---U--------- Psychrobacter_pacificensis ----------------------AGAGUUUGA-U-C-A---U--------- Chromohalobacter_marismortui -----G-------------UGUUGAGAAU-A-U-C--------------- F -------------------------------------------------- Pseudomonas_aeruginosa -----C-------------UGAAGAGUUUGA-U-C-A---U--------- Pseudomonas_aeruginosa -----C-------------UGAAGAGUUUGA-U-C-A---U--------- Pseudomonas_sp. -----U-------------CUGACCGUGUGA-U-C-A---U--------- Pseudomonas_putida -----U-------------CUGACAGUUUGA-U-C-----C--------- Coxiella_burnetii -----U-------------UGAAGAGUUUGA-U-U-C---U--------- Methylococcus_capsulatus -----C-------------UGAAGAGUUUGA-U-C-A---U--------- Legionella_pneumophila -----C-------------UGAAGAGUUUGA-U-C-C---U--------- Legionella_pneumophila -----G-------------UGUUGAGAAU-A-U----------------- Allochromatium_vinosum -----C-------------UGAAGAGUUUGA-U-C-C---U--------- Beggiatoa_sp._1401-13 -----U-------------CUGACCGUUUGA-U-C-----U--------- Aeromonas_hydrophila -----U-------------CUGAGAGUUUGA-U-C-A---U--------- Shewanella_putrefaciens -----U-------------CUGAGAGUUUGA---U-A---C--------- Citrobacter_freundii -----U-------------UGAAGAGUUUGA-U-C-A---U--------- Shigella_dysenteriae -----U-------------UGAAGAGUUUGA-U-C-A---U--------- Klebsiella_pneumoniae -----G-------------UGAAGAGUUUGA-U-C-A---U--------- Plesiomonas_shigelloides -----U-------------UGAAGAGUUUGA-U-C-A---U--------- Yersinia_pestis -----G-------------CUCUGACCGUGU-U-G-A------------- F -------------------------------------------------- Shigella_dysenteriae -----G-------------CUCUGACCGUG--U-U-G------------A Escherichia_coli_O157:H7 -----U-------------UGAAGAGUUUGA-U-C-A---U--------- Escherichia_coli_O157:H7_EDL933 -----U-------------UGAAGAGUUUGA-U-C-A---U--------- Escherichia_coli -----U-------------UGAAGAGUUUGA-U-C-A---U--------- Escherichia_coli_K12 -----U-------------UGAAGAGUUUGA-U-C-A---U--------- Escherichia_coli -----U-------------UGAAGAGUUUGA-U-C-A---U--------- Escherichia_coli -----U-------------UGAAGAGUUUGA-U-C-A---U--------- Escherichia_coli -----U-------------UGAAGAGUUUGA-U-C-A---U--------- Salmonella_typhimurium -----U-------------UGAAGAGUUUGA-U-C-A---U--------- Serratia_marcescens -----U-------------UGAAGAGUUUGA-U-C-A---U--------- Edwardsiella_tarda -----G-------------UGUUGAGAAU-A-U-C--------------- Proteus_vulgaris -----U-------------UGAAGAGUUUGA-U-C-A---U--------- Vibrio_cholerae -----U-------------UGAAGAGUUUGA-U-C-----C--------- Vibrio_cholerae -----U-------------UGAAGAGUUUGA-U-C-----C--------- Vibrio_cholerae -----U-------------UGAAGAGUUUGA-U-C-----C--------- Vibrio_cholerae -----C-------------UCUGACCUUUGA-U-C-----C--------- Vibrio_cholerae -----C-------------UCUAGAGUUUGA---U-G------------- Vibrio_cholerae -----U-------------UGAAGAGUUUGA-U-C-A---U--------- F -------------------------------------------------- Haemophilus_influenzae -----G-------------UGUUGAGA---A---U-A---U--------- Haemophilus_influenzae -----G-------------UGUUGAGA---A---U-A---U--------- Haemophilus_influenzae -----G-------------UGUUGAGA---A---U-A---U--------- Haemophilus_influenzae -----U-------------UGAAGAGUUUGA-U-C-A---U--------- Haemophilus_influenzae_(operons_A-F) -----U-------------UGAAGAGUUUGA-U-C-A---U--------- Pasteurella_multocida -----U-------------UGAAGAGUUUGA-U-C-A---U--------- Pasteurella_multocida -----U-------------UGAAGAGUUUGA-U-C-A---U--------- Xanthomonas_albilineans -----G-------------UGUUGAGAAU-A-U-C--------------- Xanthomonas_campestris -----G-------------UGUUGAGAAU-A-U----------------- Xylella_fastidiosa -----G-------------UGAAGAGUUUGA-U-C-C---U--------- Dichelobacter_nodosus -----C-------------UGAAGAGUUUGA-U-U-C---U--------- Francisella_tularensis -----U-------------UGAAGAGUUUGA-U-C--------------- Bordetella_parapertussis -----C-------------UGAAGAGUUUGA-U-C-C---U--------- Bordetella_pertussis -----C-------------UGAAGAGUUUGA-U-C-C---U--------- Bordetella_bronchiseptica -----C-------------UGAAGAGUUUGA-U-C-C---U--------- unidentified_proteobacterium -----G-------------UGUUGAGAAU-A-U----------------- Burkholderia_mallei -----G-------------UGUUGAGAAU-A-U-C--------------- Burkholderia_sp. -----C-------------GACAGAGUUUGA-U-C-C---U--------- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -----C-------------AUAAGAGUUUGA-U-C-C---U--------- Comamonas_testosteroni -----C-------------UAUAGAGUUUGA-U-C-C---U--------- Desulfovibrio_desulfuricans -----C-------------UGGAGAGUUUGA-U-U-C---U--------- Myxococcus_xanthus -----U-------------UGGAGAGUUUGA-U-C-C---U--------- Deferribacter_thermophilus -----U-------------CUGAGAGUUUGA-U-C-C---U--------- Borrelia_burgdorferi -----A-------------CGAAGAGUUUGA-U-C-C---U--------- Borrelia_burgdorferi -----A-------------CGAAGAGUUUGA-U-C-C---U--------- Borrelia_hermsii -----U-------------CUGACAGUUUGA-U-C-C---U--------- Spirochaeta_aurantia -----A-------------UGGAGAGUUUGA-U-C-C---U--------- Treponema_pallidum_(rRNA_A) -----A-------------UGGAGAGUUUGA-U-C-C---U--------- Leptonema_illini -----A-------------CGGAGAGUUUGA-U-C-C---U--------- Leptospira_interrogans -----A-------------CGGAGAGUUUGA-U-C-C---U--------- Chlamydia_trachomatis_D/UW-3/CX -----U-------------CUGAGAAUUUGA-U-C-U---U--------- Chlamydia_trachomatis_L2/434/BU -----U-------------CUGAGAAUUUGA-U-C-U---U--------- Chlamydia_muridarum -----U-------------CUGAGAAUUUGA-U-C-U---U--------- Chlamydophila_pneumoniae_AR39 -----U-------------CUGAGAAUUUGA-U-C-U---U--------- Chlamydophila_pneumoniae -----U-------------CUGAGAAUUUGA-U-C-U---U--------- Chlamydophila_pneumoniae_J138 -----U-------------CUGAGAAUUUGA-U-C-U---U--------- F -------------------------------------------------- Chlamydophila_psittaci -----U-------------CUGAGAAUUUGA-U-C-U---U--------- Deinococcus_radiodurans -----A-------------UGGAGAGUUUGA-U-C-C---U--------- Deinococcus_radiodurans -----A-------------UGGAGAGUUUGA-U-C-C---U--------- Bacteroides_fragilis -----A-------------UGAAGAGUUUGA-U-C-C---U--------- Porphyromonas_gingivalis -----G-------------UGGAGAGUUUGA-U-C-C---U--------- Prosthecochloris_vibrioformis -----A-------------CGGAGAGUUUGA-U-C-C---U--------- Campylobacter_jejuni -----A-------------UGGAGAGUUUGA-U-C-C---U--------- Campylobacter_jejuni -----A-------------UGGAGAGUUUGA-U-C-C---U--------- Campylobacter_sputorum -----U-------------AAUACCUCAUAC-U-C-CAA-UU----AU-A F -------------------------------------------------- Helicobacter_pylori_J99 -----A-------------UGGAGAGUUUGA-U-C-C---U--------- Helicobacter_pylori -----A-------------UGGAGAGUUUGA-U-C-C---U--------- Acidobacterium_capsulatum -----G-------------UGUUGAGAAU-A-U-C--------------- Holophaga_foetida -----U-------------CUGAGAGUUUGA-U-C-C---U--------- Arthrobacter_globiformis -----A-------------CGGAGAGUUUGA-U-C-C---U--------- Micrococcus_luteus -----A-------------CGGAGAGUUUGA-U-C-C---U--------- Frankia_sp. -----A-------------UGGAGAGUUUGA-U-C-C---U--------- Streptomyces_bottropensis -----A-------------CGGAGAGUUUGA-U-C-C---U--------- Streptomyces_scabiei -----A-------------CGGAGAGUUUGA-U-C-C---U--------- Streptomyces_neyagawaensis -----A-------------CGGAGAGUUUGA-U-C-C---U--------- F -------------------------------------------------- Streptomyces_sp. -----A-------------CGGAGAGUUUGA-U-C-C---U--------- Streptomyces_acidiscabies -----A-------------CGGAGAGUUUGA-U-C-C---U--------- Streptomyces_griseus -----A-------------CGGAGAGUUUGA-U-C-C---U--------- Streptomyces_ornatus -----U-------------CUGAGAGUUUGA-U-C-C---U--------- Streptomyces_subrutilus -----U-------------CUGAGAGUUUGA-U-C-C---U--------- Streptomyces_bikiniensis -----U-------------CUGAGAGUUUGA-U-C-C---U--------- Streptomyces_galbus -----U-------------CUGAGAGUUUGA-U-C-C---U--------- Streptomyces_hygroscopicus -----U-------------CUGAGAGUUUGA-U-C-C---U--------- Streptomyces_lincolnensis -----U-------------CUGAGAGUUUGA-U-C-C---U--------- Streptomyces_coelicolor -----A-------------CGGAGAGUUUGA-U-C-C---U--------- Streptomyces_tendae -----A-------------CGGAGAGUUUGA-U-C-C---U--------- Streptomyces_ambofaciens -----A-------------CGGAGAGUUUGA-U-C-C---U--------- Streptomyces_eurythermus -----A-------------CGGAGAGUUUGA-U-C-C---U--------- Streptomyces_nodosus -----A-------------CGGAGAGUUUGA-U-C-C---U--------- Streptomyces_sampsonii -----A-------------CGGAGAGUUUGA-U-C-C---U--------- Streptomyces_glaucescens -----U-------------CUGAGAGUUUGA-U-C-C---U--------- Streptomyces_pseudogriseolus -----U-------------CUGAGAGUUUGA-U-C-C---U--------- Streptomyces_caelestis -----U-------------CUGAGAGUUUGA-U-C-C---U--------- Streptomyces_bluensis -----U-------------CUGAGAGUUUGA-U-C-C---U--------- Streptomyces_espinosus -----U-------------CUGAGAGUUUGA-U-C-C---U--------- Streptomyces_mashuensis -----U-------------CUGAGAGUUUGA-U-C-C---U--------- Streptomyces_rimosus -----A-------------CGGAGAGUUUGA-U-C-C---U--------- Streptomyces_limosus -----G-------------CUCUGACCGUG--U-U-----G--------A Streptomyces_odorifer -----G-------------CUCUGACCGUG--U-U-----G--------A Streptomyces_felleus -----G-------------CUCUGACCGUG--U-U-----G--------A Streptomyces_albidoflavus -----G-------------CUCUGACCGUG--U-U-----G--------A Streptomyces_gougerotii -----G-------------CUCUGACCGUG--U-U-----G--------A Streptomyces_rutgersensis -----G-------------CUCUGACCGUG--U-U-----G--------A Streptomyces_intermedius -----G-------------CUCUGACCGUG--U-U-----G--------A F -------------------------------------------------- Streptomyces_thermoviolaceus -----G-------------UGUUGAGAAU-A-U-C--------------- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus -----G-------------UGUUGAGAAU-A-U-C--------------- Streptomyces_megasporus -----G-------------UGUUGAGAAU-A-U-C--------------- Streptomyces_thermolineatus -----G-------------UGUUGAGAAU-A-U-C--------------- Mycobacterium_tuberculosis -----G-------------UGUUGAGAAU-A-U-C--------------- Mycobacterium_tuberculosis -----G-------------UGUUGAGAAU-A-U-C--------------- Mycobacterium_avium -----G-------------UGUUGAGAAU-A-U-C--------------- Mycobacterium_leprae -----U-------------UGGAGAGUUUGA-U-C-C---U--------- Mycobacterium_leprae -----U-------------UGGAGAGUUUGA-U-C-C---U--------- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides -----G-------------UGUUGAGAAUG----C-U------------- Rhodococcus_erythropolis -----A-------------CGGAGAGUUUGA-U-C-C---U--------- Corynebacterium_diphtheriae -----G-------------UGUUGAGAAU-A-U-U--------------- Actinomyces_israelii -----G-------------UGUUGAGAAU-A-U-C--------------- Brachyspira_hyodysenteriae -----G-------------CUCUGACCGUG--U-U-----G--------A Geotoga_subterranea -----A-------------AGAAGGGUUUGA-U-C-C---U--------- Petrotoga_miotherma -----A-------------UUGAGGGUUUCA-U-C-C---U--------- Brevinema_andersonii -----A-------------UGGAGGGUUUGA-U-U-C---U--------- Herpetosiphon_aurantiacus -----U-------------CGGCGAGUUUGA-U-C-C---U--------- F -------------------------------------------------- Aquifex_aeolicus -----C-------------UGAAGAGUUUGA-U-C-C---U--------- Aquifex_pyrophilus -----C-------------UGAAGAGUUUGA-U-C-C---U--------- Thermotoga_maritima -----A-------------UGGAGGGUUUGA-U-C-C---U--------- Thermotoga_maritima -----A-------------UGGAGGGUUUGA-U-C-C---U--------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -----U-------------UGGAGAGUUUGA-U-C-C---U--------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -----U-------------UGGAGAGUUUGA-U-C-C---U--------- Thermus_aquaticus -----G-------------UGUUGAGAAUG----C-U------------- Thermomicrobium_roseum -----A-------------UGGAGAGUUUGA-U-C-C---U--------- Pirellula_marina -----U-------------UGAAGGGUUUGA-U-U-C---U--------- Pirellula_staleyi -----U-------------UGAAGAGUUUGA-U-C-C---U--------- Planctomycetaceae_Schlesner_670 -----C-------------UGACCGUGUUGA---C-C---U--------- Gemmata_obscuriglobus -----G-------------UGUUGAGAAU-A-U-C--------------- Isosphaera_pallida -----C-------------CGAAGGGUUUGA-U-C-C---U--------- Pyrococcus_abyssi -----U-------------AAUUCCGGUUGA-U-C-C---U--------- Pyrococcus_horikoshii --------------------AUUCCGGUUGA-U-C-C---U--------- Pyrococcus_furiosus --------------------AUUCCGGUUGA-U-C-C---U--------- Thermococcus_celer --------------------AUUCCGGUUGA-U-C-C---U--------- Archaeoglobus_fulgidus --------------------AUUCUGGUUGA-U-C-C---U--------- Nanoarchaeum_equitans --------------------ACUCCCGUUGA-U-C-C---U--------G Aeropyrum_pernix_(str._K1) --------------------ACUCCGGUUGA-U-C-C---U--------- Pyrodictium_occultum --------------------ACUCCGGUUGA-U-C-C---U--------- Thermoproteus_tenax --------------------AAACCGGUUGA-U-C-C---U--------- Sulfolobus_acidocaldarius --------------------AUUCCGGUUGA-U-C-C---U--------- Sulfolobus_solfataricus --------------------AUUCCGGUUGA-U-C-C---U--------- Bacteroides_fragilis -------------------AAAUCCGGUUGA-U-C-C---U--------- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum --------------------AGUCCGUUUGA-U-C-C---U--------- Methanococcus_vannielii --------------------AUUCCGGUUGA-U-C-C---C--------- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. --------------------AUUCCGGUUGA-U-C-C---U--------- Natronorubrum_bangense --------------------AUUCCGGUUGA-U-C-C---U--------- Natronobacterium_innermongoliae --------------------AUUCCGGUUGA-U-C-C---U--------- Haloferax_volcanii --------------------AUUCCGGUUGA-U-C-C---U--------- Methanospirillum_hungatei --------------------AUUCUGUUUGA-U-C-C---U--------- Picrophilus_torridus_DSM_9790 --------------------ACUCCGGUUGA-U-C-C---U--------- Thermoplasma_acidophilum --------------------ACUCCGGUCGA-U-C-C---U--------- Giardia_ardeae -----U-------------CCGGUUGAUCCU-G-C-C------------- Giardia_intestinalis -----U-------------CCGGUCGAUCCU-G-C-C------------- Giardia_muris -----U-------------CCGGUUGAUCCU-G-C-C------------- Amblyospora_bracteata --------------------CACCAGGUUGA-U-U-C---U--------- Glomus_sp._W3349 -----C-------------UAAAAAUCCCGACU-U-C---U-----GG-A Scutellospora_cerradensis -----A-------------UAACCGUGGUAA-U-U-C---U-----AG-A Glomus_intraradices -----A-------------UAACCGUGGUAA-U-U-C---U-----AG-A Smittium_culisetae -----A-------------AAAAACUCCCGACU-U-C---U-----GG-A Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus -----A-------------UACCUGUGGUAA-U-U-C---U-----AG-A Tilletia_caries -----U-------------AACUGUGGUAAA-U-C-----UA----GA-G Mucor_circinelloides_f._lusitanicus -----A-------------UAACCGUGGUAA-U-U-C---U-----AG-A Mucor_racemosus -----A-------------UAACCGUGGUAA-U-U-C---U-----AG-A Rhizopus_oryzae -----A-------------UAACCGUGGUAA-U-U-C---U-----AG-A Mytilus_edulis -----C-------------AUGAAGCACGGC-U-C-U---G--------A Placopecten_magellanicus -----A-------------UUCUAGAGCUAA-U-A-C---A-----UGCA Echinococcus_granulosus -----U-------------AAUACGGUGAGA---C-C---------GC-G Drosophila_melanogaster -----U-------------AUUAGGCUAAAA---C-C---A-----AG-- Crossodonthina_koreana -----G-------------CUAAUACAUGCG-U-U-G---G-----GC-U Androctonus_australis -----G-------------CUAAUACAUGCA-U-C-AG--A-----GC-U Okanagana_utahensis -----U-------------UCGCCGGCGCCG-U-C-U---C-----U--U Artemia_salina -----G-------------CUAAUACAUGCA---C-AA--UA----GC-C Mus_musculus -----G-------------GGGAUGCGUGCA-U-U-U---A--------U Rattus_norvegicus -----G-------------GGGACGCGUGCA-U-U-U---A--------U Homo_sapiens -----G-------------GGGAUGCGUGCA-U-U-U---A--------U Oryctolagus_cuniculus -----G-------------CGCUGACUCCCU-U-U-G---U-----GU-G Xenopus_borealis -----U-------------AGAGCUAAUACA-UGC-C---------GA-C Xenopus_laevis -----U-------------AGAGCUAAUACA-UGC-C---------GA-C Acanthamoeba_castellanii -----G-------------UUUAUACGGCGA-G-A-C---U-----GC-G Balamuthia_mandrillaris -----C-------------AGGGUGGCUUGC-UGC-C---C-----UG-- Plasmodium_falciparum -----A-------------ACUACGGAAAAG---C-U---------GU-A Plasmodium_falciparum -----C-------------UUGUCUCACAGA-U-U-----A-----AG-C Plasmodium_vivax -----C-------------UCUUGAUUCAUU-U-C-U---U--------- Plasmodium_vivax -----A-------------AAGAUUAAGUCA-U-G-C---U--------- Plasmodium_vivax -----U-------------AUAAGAAAAAAG-U-U-A---A--------U Entamoeba_histolytica -----C-------------UGAUGUUAAAGA-U-U-A---A-----GC-C Ichthyophonus_hoferi -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Dermocystidium_sp. -----U-------------ACAUGCUAAAAA-U-C-C---C--------- Sphaerothecum_destruens -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Acanthocoepsis_unguiculata -----A-------------UAACCGUGGUAA-U-U-C---U-----AG-A Diaphanoeca_grandis -----A-------------UAACCGUGGUAA-U-U-C---U-----AG-A Allomyces_macrogynus -----A-------------CAUGCACAAAAG-U-C-C---U--------- Blastocladiella_emersonii -----A-------------CAUGCACUCAAG-U-C-C---U--------G Candida_albicans -----C-------------UUGUCUCAAAGA-U-U-A---A--------G Saccharomyces_cerevisiae -----U-------------AACUGUGGUAAU-U-C-U---A-----GA-G Neurospora_crassa -----A-------------UAACCGUGGUAA-U-U-C---U-----AG-A Podospora_anserina -----A-------------UAACCGUGGUAA-U-U-C---U-----AG-A Coccidioides_immitis -----A-------------UACCCGUGGUAA-U-U-C---U-----AG-A Leishmania_major -----A-------------UUUGCAGGAAUC-U-G-----C--------G Trypanosoma_cruzi -----C-------------CUCAGAAUCACU-G-C-A---U-----UG-- Trypanosoma_brucei -----U-------------AUCAGCCAGUGAUG-G-C---C-----GU-G Pneumocystis_carinii -----A-------------UAACCGUGGUAA-U-U-C---U-----AG-A Cryptococcus_neoformans_var._neoformans -----A-------------UAACUGUGGUAA-U-U-C---U-----AG-A fungal_contaminant_of_QPX_isolate -----A-------------UAACUGUGGUAA-U-U-C---U-----AG-A Ustilago_maydis -----A-------------UAACUGUGGUAA-U-U-C---U-----AG-A Mnemiopsis_leidyi -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Tripedalia_cystophora -----U-------------ACAUGCGAAAAG-U-C-C------------- Microciona_prolifera -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Psorospermium_haeckeli -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Euglypha_rotunda -----U-------------ACAUGCACAAAG-U-C-C---C--------A Paulinella_chromatophora -----U-------------AGAGCUAAUACA-U-G-C---G-----CA-A Antirrhinum_majus -----U-------------ACGUGCAACAAA---C-C---C--------- Sesamum_indicum -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Digitalis_grandiflora -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Plantago_lanceolata -----U-------------ACGUGCAACAAA---C-C---C--------- Nicotiana_tabacum -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Arabidopsis_thaliana -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Sinapis_alba -----A-------------UAACCGUAGUAA-U-U-C---UAGAGCUA-A Solanum_tuberosum -----U-------------ACGUGCAACAAA---C-C---C--------- Fragaria_x_ananassa -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Glycine_max -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Oryza_sativa -----A-------------UAACCGUAGUAA-U-U-C---UAGA--GC-U Zea_mays -----A-------------UAACCGUAGUAA-U-U-C---UAGA--GC-U F -------------------------------------------------- Genicularia_spirotaenia -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A F -------------------------------------------------- Cyanophora_paradoxa -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Glaucocystis_nostochinearum -----U-------------ACAUGCAACAAG-U-C-C---C--------G Gloeochaete_wittrockiana -----A-------------UACCUGUAGUAA-U-U-C---UA----GA-G FChlorella'_luteoviridis -----A-------------AUACGUGCGUAA-A-C-C---C--------- Oxytricha_longa -----A-------------UAACCGUGGUAA-U-U-C---U-----AG-A Paraurostyla_weissei -----A-------------UAACCGUGGUAA-U-U-C---U-----AG-A Cyrtohymena_citrina -----A-------------UAACCGUGGUAA-U-U-C---U-----AG-A Gastrostyla_steinii -----A-------------UAACCGUGGUAA-U-U-C---U-----AG-A Pleurotricha_lanceolota -----A-------------UAACCGUGGUAA-U-U-C---U-----AG-A Onychodromus_quadricornutus -----A-------------UAACCGUGGUAA-U-U-C---U-----AG-A Stylonychia_lemnae -----A-------------UAACCGUGGUAA-U-U-C---U-----AG-A Stylonychia_mytilus -----A-------------UAACCGUGGUAA-U-U-C---U-----AG-A Engelmanniella_mobilis -----A-------------UAACCGUGGUAA-U-U-C---U-----AG-A Oxytricha_granulifera -----A-------------UAACCGUGGUAA-U-U-C---U-----AG-A Oxytricha_granulifera -----A-------------UAACCGUGGUAA-U-U-C---U-----AG-A Uroleptus_gallina -----A-------------UAACCGUGGUAA-U-U-C---U-----AG-A Uroleptus_pisces -----A-------------UAACCGUGGUAA-U-U-C---U-----AG-A Paruroleptus_lepisma -----A-------------UAACCGUGGUAA-U-U-C---U-----AG-A Urostyla_grandis -----A-------------UAACCGUGGUAA-U-U-C---U-----AG-A Balantidium_coli -----C-------------UUGUCUCAAAGA---C-----U-----A--A Euplotes_aediculatus -----A-------------UUUAAACCAAUA-U-U-C---C--------G Tetrahymena_thermophila -----A-------------UAACCGAGCUAA-U-UGU---U-----GG-G Bangia_sp._(Northwest_Territories/NWT) -----A-------------UAACCGUAGUAA-U-U-C---UAG---AG-C Bangia_sp._(Virgin_Islands/VIS7) -----G-------------CUAAUACAUGCA-U-U-A---A-----GG-C Erythrotrichia_carnea -----A-------------UAACCGUAGUAA-U-U-C---UA----GA-G Rhodochaete_parvula -----A-------------UACCCCUAGUAA-U-U-C---UAGA--GC-U Compsopogon_coeruleus -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Porphyridium_aerugineum -----A-------------UACCCCUAGUAA-U-U-C---U-----AG-A Rhodella_maculata -----A-------------UAACCCAAGUAA-U-U-C---U-----UG-A Aulacoseira_ambigua -----A-------------UAACCGUAGUAA-U-U-C---UA----GA-G Aulacoseira_baicalensis -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Stephanopyxis_nipponica -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Coscinodiscus_radiatus -----A-------------UAACUGUAGUAA-U-U-C---UA----GA-G Corethron_criophilum -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Amphora_cf._capitellata -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Sellaphora_pupula_f._capitata -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Thalassiosira_antarctica -----A-------------UACCCGUAGUAA-U-U-C---U-----AG-A Encyonema_triangulatum -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Achnanthes_bongranii -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A F -------------------------------------------------- Diatoma_tenue -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Grammatophora_marina -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Thalassionema_sp._p474 -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Rhaphoneis_belgicae -----A-------------UAACCGUAGUAA-U-U-C---UAG---AG-C Undatella_sp._p446 -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Cymatosira_belgica -----A-------------UAACCGUAGUAA-U-U-C---UA----GA-G Odontella_sinensis -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Ditylum_brightwellii -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Lithodesmium_undulatum -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Thalassiosira_eccentrica -----A-------------UACCCGUAGUAA-U-U-C---U-----AG-A Thalassiosira_pseudonana -----A-------------UACCUGUAGUAA-U-U-C---U-----AG-A Skeletonema_costatum -----A-------------UAACCGUAGUAA-U-U-C---UA----GAGC Pleurosira_cf._laevis -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Lauderia_borealis -----A-------------UACCCGUAGUAA-U-U-C---UAG---AG-C F -------------------------------------------------- Bolidomonas_mediterranea -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Bolidomonas_pacifica -----G-------------CUAAUACAUGCG-U-A-A---A-----CA-C Labyrinthuloides_minuta -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Leptocylindrus_danicus -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Chaetoceros_sp. -----A-------------UACCCGUAGUAA-U-U-C---U-----AG-A Aphanomyces_invadans -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Lagenidium_giganteum -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Melosira_varians -----A-------------UAACCGUAGUAA-U-UCU---A-----GA-G Blastocystis_hominis -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-G Perkinsus_marinus -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Toxoplasma_gondii -----A-------------UAACCGUGGUAA-U-U-C---UA----UG-G Alexandrium_fundyense -----A-------------UAUCUGUGGGAA-U-U-C---U-----AU-A Babesia_bigemina -----A-------------GUCAUAUGCUUG-U-C-U---U--------- Babesia_canis -----U-------------UUCCAUGGAUAA---C-C---------G--U Babesia_sp._'Oklahoma_dog' -----A-------------GUUUAUUUGGUA-U-U-C---------GU-U Babesia_microti -----A-------------UAACCGUGGUAA-U-U-C---U-----AG-G Babesia_microti -----A-------------UAACCGUGGUAA-U-U-C---U-----AG-G Babesia_microti -----A-------------UAACCGUGGUAA-U-U-C---U-----AG-G Babesia_microti -----A-------------UAACCGUGGUAA-U-U-C---U-----AG-G Babesia_microti -----A-------------UAACCGUGGUAA-U-U-C---U-----AG-G Babesia_rodhaini -----A-------------UAACCGUGGUAA-U-U-C---U-----AG-G Babesia_gibsoni -----A-------------UAACCGUGCUAA-U-U-G---U-----AG-G Babesia_bovis -----A-------------GUCAUAUGCUUG-U-C-U---U--------- Jakoba_libera -----A-------------UAACCGUAGUAACU-C-C---A-----G--A Reclinomonas_americana -----A-------------CAUGGAUACCUG-U-C-GG--U-----AA-C Bonamia_ostreae -----U-------------UUGACAUUGAAC-UGU-U---------AC-A Audouinella_dasyae -----A-------------UAACCGUAGUAA-U-U-C---U--------- Audouinella_hermannii -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Nemalion_helminthoides -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Batrachospermum_gelatinosum -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Nemalionopsis_tortuosa -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Thorea_hispida -----A-------------UAACCGUAGUAAAU-C-U---A-----G--A Thorea_violacea -----A-------------UAACCGUAGUAAAU-C-U---A-----G--A Thorea_violacea -----A-------------AACAGCUAUAGU-U-U-C---UUC---GA-U Thorea_violacea -----A-------------AACAGCUAUAGU-U-U-C---UUC---GA-U Nemalionopsis_shawii -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Balbiania_investiens -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Batrachospermum_macrosporum -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Ahnfeltia_plicata -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Corallina_officinalis -----A-------------UAAUCGUAGUAA-U-U-C---U-----AG-A Rhodogorgon_carriebowensis -----U-------------GGUAACUUACUA-U-U-CGGAU-----AACC Bonnemaisonia_hamifera -----A-------------AAACAGCUAUAAUU-U-C---U-----UC-G Gelidium_vagum -----A-------------AACAGCUAUAGU-U-U-C---U-----UC-G Chondrus_crispus -----A-------------UACCCGUAGUAA-U-U-C---U-----AG-A Halymenia_plana -----A-------------AACAGCUAUAGU-U-U-C---U-----UC-G Rhodymenia_leptophylla -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Plocamiocolax_pulvinata -----U-------------AACCGUAGUAAA-U-C-U---A------G-A Ceramium_rubrum -----A-------------UAACCGUAGUAA-U-U-C---U--------- Gracilariopsis_sp. -----A-------------UAACCGUAGUAA-U-U-C---U-----AG-A Bostrychia_moritziana -----C-------------AGUAAAAAUUUU-U-U-C---G-----GAGA Hildenbrandia_rubra -----A-------------UAACCGUAGUAA-U-U-C---U--------A Dixonielloa_grisea -----A-------------UAUCCGCAGUAA-U-U-C---UGGG--GU-U Naegleria_fowleri -----U-------------GAGCUAACAAGG-U-U-U---U-----C--A Naegleria_gruberi -----A-------------AUUAACAAGGUU-U-U-C------------A Hexamita_sp. -----U-------------AUAAGCUAAUAC-A-C-----A--------G Tritrichomonas_foetus -----C-------------UACUUGGUGGCG-A-C-C---U--------U Amblyospora_khaliulini -----U-------------CCACCAGGUUGA-U-U-C---U--------G Edhazardia_aedis --------------------CACCAGGUUGA-U-U-C---U--------- Amblyospora_connecticus --------------------CACCAGGUUGA-U-U-C---U--------G Intrapredatorus_barri --------------------CACCAGGUUGA-U-U-C---U--------G Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. --------------------CACCAGGUUGA-U-U-C---U--------G Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii --------------------CACCAGGUUGA-U-U-C---U--------- Weiseria_palustris --------------------CACCAGGUUGA-U-U-C---U--------- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani --------------------CACCAGGUUGA-U-U-C---U--------- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae --------------------CACCAGGUUGA-U-U-C---U--------G Thelohania_solenopsae -----U-------------CCACCAGGUUGA-U-U-C---U--------- Visvesvaria_acridophagus --------------------CACCAGGUUGA-U-U-C---U--------G Bacillidium_sp. --------------------CACCAGGUUGA-U-U-C---U--------G Pseudonosema_cristatellae --------------------CACCAGGUUGA-U-U-C---U--------G Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum --------------------CACCAGGUUGA-U-U-C---U--------- Pleistophora_mirandellae --------------------CACCAGGUUGA-U-U-C---U--------- Trachipleistophora_hominis --------------------CACCAGGUUGA-U-U-C---U--------- Vavraia_culicis --------------------CACCAGGUUGA-U-U-C---U--------- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii --------------------CACCAGGUUGA-U-U-C---U--------- F -------------------------------------------------- Dictyocoela_gammarellum --------------------UGCUCUGUUGA-U-U-C---U--------- Microsporidium_prosopium -----G-------------CUCUGACCGUG--U-U-G------------A Antonospora_scoticae --------------------CACCAGGUUGA-U-U-C---U--------- Paranosema_whitei -----G-------------CUCUGACCGUG--U-U-----G--------A #=GC SS_cons ................................<.<.<.........<<.. Cynomorium_coccineum GA----UCC--UGGC--UC---A--G-G---A-U---G----------A- Cytinus_ruber GA----UCC--UGGC--UC---A--G-G---A-U---G----------A- Nicotiana_tabacum GA----UCC--UGGC--UC---A--G-G---A-U---G----------A- Spinacia_oleracea GA----UCC--UGGC--UC---A--G-G---A-U---G----------A- Zea_mays GA----UCC--UGGC--UC---A--G-G---A-U---G----------A- Marchantia_polymorpha GA----UCC--UGGC--UC---A--G-G---A-U---G----------A- Ricinus_communis GA----GAA--UAUC--UC---A--G-G---A-U---G----------A- F GA----UCC--UGGC--UC---A--G-G---A-U---G----------A- Prototheca_wickerhamii GA----UCC--UGGC--UC---A--G-G---A-U---A----------A- Pedinomonas_minor GA----UCC--UGGC--UC---A--G-G---A-U---G----------A- Nephroselmis_olivacea GA----UCC--UGGC--UC---A--G-G---A-U---G----------A- Pyramimonas_parkeae GA----A----U--A--U----C--G-G---G-UUUCG----------A- Chlamydomonas_reinhardtii GA----UCC--UGGC--UC---A--G-G---A-C---G----------A- Acanthamoeba_castellanii UA----UUC--UGGC--UC---C--G-A---G-U---G----------A- Pilostyles_thurberi -G-----U---U-G--------A--G-A---A-U--------------A- Chondrus_crispus GA----UCC--UGGC--UC---A--G-A---A-U---G----------A- Toxoplasma_gondii GA----UCC--UGGC--UC---C--G-G---A-A---G----------A- Neurospora_crassa UU----AAG---CUA-------AG-G-G---G-U---UU---------A- Podospora_anserina UG----GUGA-UGGC--UC---U--G-A---U-U---G----------A- Penicillium_chrysogenum GA----UGG---CUC-------U--A-A---C-U---G----------A- Emericella_nidulans GA----UGG---CUC-------U--G-A---U-U---G----------A- Saccharomyces_cerevisiae GA----AUA---UGA--UG---U--U-G---G-U---UC---------AG Williopsis_saturnus_var._mrakii AA----UAU--GAUG--UU---A--G-U---U-CA--GACU-------U- Pedinomonas_minor AG-----UU--UGA--------A----A---A----------------U- Plasmodium_falciparum ------UAG---CUC-------A--G-A---A-U----U---------A- Babesia_bovis -U-----GG--CUC--------A--G-A---A-U----G---------A- Tetrahymena_pyriformis GA----UCA---UGGC-UC---G--G-G---A-U----U---------A- Suillus_sinuspaulianus CU----UCA--UAGA--U----A--G-A----------A---------G- Paramecium_tetraurelia GA----UCU--UAGC--UU---U--G-A---U-U----U---------A- Dictyostelium_discoideum GA----UUC--UGGC--UC---C--G-A---A-U----G---------A- Physarum_polycephalum GA----UUU---AAA-------A--G-A---U-U---AU---------A- Pylaiella_littoralis -------GG--CUC--------A--G-A---G-U----G---------A- Prototheca_wickerhamii GA----UCC--UGGC--UC---A--G-A---A-U----G---------A- Hydnora_africana -------GG--CUC--------A--G-G---A-U----G---------A- Codium_fragile -------GG--CUC--------A--G-G---A-U----G---------A- Caulerpa_sertularioides -------GG--CUC--------A--G-G---A-U----G---------A- F -----------C----------A--G-G---A-U----G---------A- F AA----UAU--GGUG--UA---A--G-G---A-U---CG---------AC Glaucocystis_nostochinearum -------GG--CUC--------A--G-G---A-U----G---------A- Gloeochaete_wittrockiana -------GG--CUC--------A--G-G---A-U----G---------A- Cyanophora_paradoxa -------GG--CUC--------A--G-G---A-U----G---------A- Cyanophora_paradoxa -------GG--CUC--------A--G-G---A-U----G---------A- Cryptomonas_sp. -------GG--CUC--------A--G-G---A-U----G---------A- Palmaria_palmata -------GG--CUC--------A--G-G---A-U----G---------A- Heterosigma_akashiwo -------GG--CUC--------A--G-G---A-U----G---------A- Skeletonema_pseudocostatum -------GG--CUC--------A--G-G---A-U----G---------A- Pylaiella_littoralis -------GG--CUC--------A--G-G---A-U----G---------A- Cyanidium_caldarium -------GG--CUC--------A--G-G---A-U----U---------A- Emiliania_huxleyi -------GG--CUC--------A--G-G---A-U----G---------A- Euglena_gracilis CU---------C----------A--G-G---G-U----G---------A- Anabaena_sp. -------GG--CUC--------A--G-G---A-U----G---------A- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -------GG--CUC--------A--G-G---A-U----G---------A- F -------------------------------------------------- Oscillatoria_agardhii -----------G----------G--G-G---A-U----G---------A- Pleurocapsa_sp. -----------G----------G--G-G---A-U----G---------A- Microcystis_aeruginosa -----------G----------G--G-G---A-U----G---------A- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos GU-----GG--CUC--------U--G-C---A-----AG---------A- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae -G-----GG--UUU--------C--G-G---G-C---UC---------AU Streptococcus_pyogenes -G-----GG--UUU--------C--G-G---G-C---UC----------- Bacillus_anthracis -------GG--CUC--------A--G-G---A-U----G---------A- Bacillus_cereus -------GG--CUC--------A--G-G---A-U----G---------A- Enterococcus_faecalis GA-----AU---AU--------C--G-G---G-UU--CG---------A- Enterococcus_faecium -----------G----------G--G-U---A-C----G---------A- Listeria_monocytogenes -------GG--CUC--------A--G-G---A-C----G---------A- Bacillus_subtilis -------GG--CUC--------A--G-G---A-C----G---------A- Bacillus_subtilis_A -------GG--CUC--------A--G-G---A-C----G---------A- Bacillus_halodurans -------GG--CUC--------A--G-G---A-C----G---------A- Staphylococcus_aureus -------GG--CUC--------A--G-G---A-U----G---------A- Staphylococcus_aureus_N315 -------GG--CUC--------A--G-G---A-U----G---------A- Lactococcus_lactis_subsp._lactis -------GG--CUC--------A--G-G---A-C----G---------A- Streptococcus_pyogenes -------GG--CUC--------A--G-G---A-C----G---------A- Lactobacillus_acidophilus -------GG--CUC--------A--G-G---A-C----G---------A- Mycoplasma_capricolum -------GG--CUC--------A--G-G---A-U----A---------A- Mycoplasma_mycoides -U-----GG--CUC--------A--G-G---A-U----U---------A- Erysipelothrix_rhusiopathiae_(alpha-P15) -------GG--CUC--------A--G-G---A-U----G---------A- Clostridium_innocuum -------GG--CUC--------A--G-G---A-U----G---------A- Mycoplasma_genitalium -------GG--CUC--------A--G-G---A-U----U---------A- Mycoplasma_pneumoniae -------GG--CUC--------A--G-G---A-U----U---------A- Mycoplasma_pneumoniae -------GG--CUC--------A--G-G---A-U----U---------A- Mycoplasma_gallisepticum -------GG--CUC--------A--G-G---A-U----U---------A- Ureaplasma_urealyticum AG-----A---A-U---AU---C--G-G---G-U---AUU--------A- Ureaplasma_urealyticum -------GG--CUC--------A--G-G---A-U----U---------A- Mycoplasma_hyopneumoniae -------GG--CUC--------A--G-G---A-U----A---------A- Fusobacterium_necrophorum AU-----GG--CUC--------A----G---A-U----G---------A- Fusobacterium_nucleatum_subsp._nucleatum -------GG--CUC--------A--G-G---A-U----G---------A- Streptobacillus_moniliformis -------GG--CUC--------A--G-G---A-U----G---------A- Clostridium_botulinum_type_f -------GG--CUC--------A--G-G---A-C----G---------A- Clostridium_tetani -------GG--CUC--------A--G-G---A-C----G---------A- Clostridium_perfringens -------GG--CUC--------A--G-G---A-U----G---------A- Clostridium_difficile -------GG--CUC--------A--G-G---A-U----G---------A- Eubacterium_brachy -------GG--CUC--------A--G-G---A-U----G---------A- Epulopiscium_sp. -----------G----------G--G-G---A-U----G---------A- Heliobacterium_chlorum -------GG--CUC--------A--G-G---A-C----G---------A- Glycine_max -------GG--CUC--------A--G-A---A-G----G---------A- Oenothera_berteroana -------GG--CUC--------A--G-A---A-G----G---------A- Secale_cereale -------GG--CUC--------A--G-A---A-G----G---------A- Triticum_aestivum -------GG--CUC--------A--G-A---A-G----G---------A- Zea_mays -------GG--CUC--------A--G-A---A-G----G---------A- Marchantia_polymorpha -U-----GG--CUC--------A--G-A---A-U----G---------A- Nephroselmis_olivacea -------GG--CUC--------A--G-A---A-U---GA----------- Gluconacetobacter_liquefaciens AU-----GG--CUC--------A--G-A---G-C----G---------A- Bradyrhizobium_japonicum -------GG--CUC--------A--G-A---G-C----G---------A- Rhodoblastus_acidophilus -------GG--CUC--------A--G-A---A-C----G---------A- Azorhizobium_caulinodans -------GG--CUC--------A--G-A---G-C----G---------A- Bartonella_quintana -------GG--CUC--------A--G-A---A-C----G---------A- Mesorhizobium_loti -------GG--CUC--------A--G-A---A-C----G---------A- Agrobacterium_tumefaciens -------GG--CUC--------A--G-A---A-C----G---------A- Bartonella_bacilliformis -----------G----------G--G-A---A-C----G---------A- Bartonella_henselae -----------C----------A--G-A---A-C----G---------A- Brucella_melitensis ------GGG--UUUC-------C--G----------------------G- Rhodobium_orientis -----------G----------G--G-G---A-C----G---------A- F -------------------------------------------------- Rickettsia_bellii -------GG--CUC--------A--G-A---A-C----G---------A- Rickettsia_felis_URRWXCal2 -------GG--CUC--------A--G-A---A-C----G---------A- Rickettsia_prowazekii -------GG--CUC--------A--G-A---A-C----G---------A- Rickettsia_prowazekii_(str._Madrid_E) -------GG--CUC--------A--G-A---A-C----G---------A- Rickettsia_rickettsii -------GG--CUC--------A----A---A-C---GG---------A- Acinetobacter_calcoaceticus -------GG--CUC--------A--G-A---U-U----G---------A- Psychrobacter_pacificensis -------GG--CUC--------A--G-A---U-U----G---------A- Chromohalobacter_marismortui -----------G----------G--G-A---U-U----G---------A- F -------------------------------------------------- Pseudomonas_aeruginosa -------GG--CUC--------A--G-A---U-U----G---------A- Pseudomonas_aeruginosa -------GG--CUC--------A--G-A---U-U----G---------A- Pseudomonas_sp. -------GG--CUC--------A--G-A---U-U----G---------A- Pseudomonas_putida -U-----GG--CUC--------A--G-A---U-U----G---------A- Coxiella_burnetii -------GG--CUC--------A--G-A---U-U----G---------A- Methylococcus_capsulatus -------GG--CUC--------A--G-A---U-U----G---------A- Legionella_pneumophila -------GG--CUC--------A--G-A---U-U----G---------A- Legionella_pneumophila -----------C----------G--G-A---U-U----G---------A- Allochromatium_vinosum -------GG--CUC--------A--G-A---U-U----G---------A- Beggiatoa_sp._1401-13 -U-----GG--CUC--------A--G-A---U-U----G---------A- Aeromonas_hydrophila -------GG--CUC--------A--G-A---U-U----G---------A- Shewanella_putrefaciens -U-----GG--CUC--------A--G-A---U-U----G---------A- Citrobacter_freundii -------GG--CUC--------A--G-A---U-U----G---------A- Shigella_dysenteriae -------GG--CUC--------A--G-A---U-U----G---------A- Klebsiella_pneumoniae -------GG--CUC--------A--G-A---U-U----G---------A- Plesiomonas_shigelloides -------GG--CUC--------A--G-A---U-U----G---------A- Yersinia_pestis GA-----GG--CUC--------A--G-A---U-U----G---------A- F -------------------------------------------------- Shigella_dysenteriae GU-----GG--CUC--------A--G-A---U-U----G---------A- Escherichia_coli_O157:H7 -------GG--CUC--------A--G-A---U-U----G---------A- Escherichia_coli_O157:H7_EDL933 -------GG--CUC--------A--G-A---U-U----G---------A- Escherichia_coli -------GG--CUC--------A--G-A---U-U----G---------A- Escherichia_coli_K12 -------GG--CUC--------A--G-A---U-U----G---------A- Escherichia_coli -------GG--CUC--------A--G-A---U-U----G---------A- Escherichia_coli -------GG--CUC--------A--G-A---U-U----G---------A- Escherichia_coli -------GG--CUC--------A--G-A---U-U----G---------A- Salmonella_typhimurium -------GG--CUC--------A--G-A---U-U----G---------A- Serratia_marcescens -------GG--CUC--------A--G-A---U-U----G---------A- Edwardsiella_tarda ------GGG--UUUC-------G--G-G---C-U----C---------AU Proteus_vulgaris -------GG--CUC--------A--G-A---U-U----G---------A- Vibrio_cholerae -U-----GG--CUC--------A--G-A---U-U----G---------A- Vibrio_cholerae -U-----GG--CUC--------A--G-A---U-U----G---------A- Vibrio_cholerae -U-----GG--CUC--------A--G-A---U-U----G---------A- Vibrio_cholerae -U-----GG--CUC--------A--G-A---U-U----G---------A- Vibrio_cholerae AU-----GG--CUC--------A--G-A---U-U----G---------A- Vibrio_cholerae -------GG--CUC--------A--G-A---U-U----G---------A- F -------------------------------------------------- Haemophilus_influenzae -----------C----------G--G-G---U-U----G---------A- Haemophilus_influenzae -----------C----------G--G-G---U-U----G---------A- Haemophilus_influenzae -----------C----------G--G-G---U-U----G---------A- Haemophilus_influenzae -------GG--CUC--------A--G-A---U-U----G---------A- Haemophilus_influenzae_(operons_A-F) -------GG--CUC--------A--G-A---U-U----G---------A- Pasteurella_multocida -------GG--CUC--------A--G-A---U-U----G---------A- Pasteurella_multocida -------GG--CUC--------A--G-A---U-U----G---------A- Xanthomonas_albilineans -----------G----------G--G-A---G-U----G---------A- Xanthomonas_campestris -----------C----------G--G-A---G-U----G---------A- Xylella_fastidiosa -------GG--CUC--------A--G-A---G-U----G---------A- Dichelobacter_nodosus -------GG--CUC--------A----G---A-U---UG---------A- Francisella_tularensis AU-----GG--CUC--------A--G-A---U-U----G---------A- Bordetella_parapertussis -------GG--CUC--------A--G-A---U-U----G---------A- Bordetella_pertussis -------GG--CUC--------A--G-A---U-U----G---------A- Bordetella_bronchiseptica -------GG--CUC--------A--G-A---U-U----G---------A- unidentified_proteobacterium -----------C----------G--G-G---U-U---UC---------G- Burkholderia_mallei -----------G----------G--G-A---U-U----G---------A- Burkholderia_sp. -------GG--CUC--------A--G-A---U-U----G---------A- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -------GG--CUC--------A--G-A---U-U----G---------A- Comamonas_testosteroni -------GG--CUC--------A--G-A---U-U----G---------A- Desulfovibrio_desulfuricans -------GG--CUC--------A--G-A---U-U----G---------A- Myxococcus_xanthus -------GG--CUC--------A--G-A---A-C----G---------A- Deferribacter_thermophilus -------GG--CUC--------A--G-G---A-C----G---------A- Borrelia_burgdorferi -------GG--CUU--------A--G-A---A-C----U---------A- Borrelia_burgdorferi -------GG--CUU--------A--G-A---A-C----U---------A- Borrelia_hermsii -------GG--CUU--------A--G-A---A-C----U---------A- Spirochaeta_aurantia -------GG--CUC--------A--G-A---A-C----G---------A- Treponema_pallidum_(rRNA_A) -------GG--CUC--------A--G-A---A-C----G---------A- Leptonema_illini -------GG--CUC--------A--G-A---A-C----U---------A- Leptospira_interrogans -------GG--CUC--------A--G-A---A-C----U---------A- Chlamydia_trachomatis_D/UW-3/CX -------GG--UUC--------A--G-A---U-U----G---------A- Chlamydia_trachomatis_L2/434/BU -------GG--UUC--------A--G-A---U-U----G---------A- Chlamydia_muridarum -------GG--UUC--------A--G-A---U-U----G---------A- Chlamydophila_pneumoniae_AR39 -------AG---UUC-------A--G-A---U-U----G---------A- Chlamydophila_pneumoniae -------AG---UUC-------A--G-A---U-U----G---------A- Chlamydophila_pneumoniae_J138 -------AG---UUC-------A--G-A---U-U----G---------A- F -------------------------------------------------- Chlamydophila_psittaci -------GG--UUC--------A--G-A---U-U----G---------A- Deinococcus_radiodurans -------GG--CUC--------A--G-G---G-U----G---------A- Deinococcus_radiodurans -------GG--CUC--------A--G-G---G-U----G---------A- Bacteroides_fragilis -------GG--CUC--------A--G-G---A-U----G---------A- Porphyromonas_gingivalis -------GG--CUC--------A--G-G---A-U----U---------A- Prosthecochloris_vibrioformis -------GG--CUC--------A--G-G---A-C----G---------A- Campylobacter_jejuni -------GG--CUC--------A--G-A---G-U----G---------A- Campylobacter_jejuni -------GG--CUC--------A--G-A---G-U----G---------A- Campylobacter_sputorum CAU---AAG---UUUA-AU---U--G-G---G------A---------A- F -------------------------------------------------- Helicobacter_pylori_J99 -------GG--CUC--------A--G-A---G-U----G---------A- Helicobacter_pylori -------GG--CUC--------A--G-A---G-U----G---------A- Acidobacterium_capsulatum GG---------G----------A----A---U-C--------------A- Holophaga_foetida -------GG--CUC--------A--G-A---A-U----G---------A- Arthrobacter_globiformis -------GG--CUC--------A--G-G---A-U----G---------A- Micrococcus_luteus -------GG--CUC--------A--G-G---A-U----U---------A- Frankia_sp. -------GG--CUC--------A--G-G---A-C----G---------A- Streptomyces_bottropensis -------GG--CUC--------A--G-G---A-C----G---------A- Streptomyces_scabiei -------GG--CUC--------A--G-G---A-C----G---------A- Streptomyces_neyagawaensis -------GG--CUC--------A--G-G---A-C----G---------A- F -------------------------------------------------- Streptomyces_sp. -------GG--CUC--------A--G-G---A-C----G---------A- Streptomyces_acidiscabies -------GG--CUC--------A--G-G---A-C----G---------A- Streptomyces_griseus -------GG--CUC--------A--G-G---A-C----G---------A- Streptomyces_ornatus -------GG--CUC--------A--G-G---A-C----G---------A- Streptomyces_subrutilus -------GG--CUC--------A--G-G---A-C----G---------A- Streptomyces_bikiniensis -------GG--CUC--------A--G-G---A-C----G---------A- Streptomyces_galbus -------GG--CUC--------A--G-G---A-C----G---------A- Streptomyces_hygroscopicus -------GG--CUC--------A--G-G---A-C----G---------A- Streptomyces_lincolnensis -------GG--CUC--------A--G-G---A-C----G---------A- Streptomyces_coelicolor -------GG--CUC--------A--G-G---A-C----G---------A- Streptomyces_tendae -------GG--CUC--------A--G-G---A-C----G---------A- Streptomyces_ambofaciens -------GG--CUC--------A--G-G---A-C----G---------A- Streptomyces_eurythermus -------GG--CUC--------A--G-G---A-C----G---------A- Streptomyces_nodosus -------GG--CUC--------A--G-G---A-C----G---------A- Streptomyces_sampsonii -------GG--CUC--------A--G-G---A-C----G---------A- Streptomyces_glaucescens -------GG--CUC--------A--G-G---A-C----G---------A- Streptomyces_pseudogriseolus -------GG--CUC--------A--G-G---A-C----G---------A- Streptomyces_caelestis -------GG--CUC--------A--G-G---A-C----G---------A- Streptomyces_bluensis -------GG--CUC--------A--G-G---A-C----G---------A- Streptomyces_espinosus -------GG--CUC--------A--G-G---A-C----G---------A- Streptomyces_mashuensis -------GG--CUC--------A--G-G---A-C----G---------A- Streptomyces_rimosus -------GG--CUC--------A--G-G---A-C----G---------A- Streptomyces_limosus GA-----AU---AU--------C--G-G---G-U---UUC--------A- Streptomyces_odorifer GA-----AU---AU--------C--G-G---G-U---UUC--------A- Streptomyces_felleus GA-----AU---AU--------C--G-G---G-U---UUC--------A- Streptomyces_albidoflavus GA-----AU---AU--------C--G-G---G-U---UUC--------A- Streptomyces_gougerotii GA-----AU---AU--------C--G-G---G-U---UUC--------A- Streptomyces_rutgersensis GA-----AU---AU--------C--G-G---G-U---UUC--------A- Streptomyces_intermedius GA-----AU---AU--------C--G-G---G-U---UUC--------A- F -------------------------------------------------- Streptomyces_thermoviolaceus -----------G----------G--G-G---A-C----G---------A- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus -----------G----------G--G-G---A-C----G---------A- Streptomyces_megasporus -----------G----------G--G-G---A-C----G---------A- Streptomyces_thermolineatus -----------G----------G--G-G---A-C----G---------A- Mycobacterium_tuberculosis ------GGG---UUU-------C--G-G---G-C----U----------- Mycobacterium_tuberculosis ------GGG---UUU-------C--G-G---G-C----U----------- Mycobacterium_avium ------GGG---UUU-------C--G-G---G-C----U----------- Mycobacterium_leprae -------GG--CUC--------A--G-G---A-C----G---------A- Mycobacterium_leprae -------GG--CUC--------A--G-G---A-C----G---------A- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides -----------C----------A--G-G---A-C----G---------A- Rhodococcus_erythropolis -------GG--CUC--------A--G-G---A-C----G---------A- Corynebacterium_diphtheriae -----------C----------A--G-G---A-C----G---------G- Actinomyces_israelii ------GGG---UUU-------C--G-G---G-C---UC---------AU Brachyspira_hyodysenteriae GA-----AU---AU--------C--G-G---G-U---UUC--------G- Geotoga_subterranea -------GG--CUC--------A--G-G---G-U----G---------A- Petrotoga_miotherma -U-----G---CUC--------A--G-G---G-U----A---------A- Brevinema_andersonii -------GG--CUC--------A--G-A---G-C----G---------A- Herpetosiphon_aurantiacus -------GG--CUC--------A--G-G---A-C----G---------A- F -------------------------------------------------- Aquifex_aeolicus -------GG--CUC--------A--G-C---G-C----G---------A- Aquifex_pyrophilus -------GG--CUC--------A--G-C---G-C----G---------A- Thermotoga_maritima -------GG--CUC--------A--G-G---G-U----G---------A- Thermotoga_maritima -------GG--CUC--------A--G-G---G-U----G---------A- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------GG--CUC--------A--G-G---G-U----G---------A- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -------GG--CUC--------A--G-G---G-U----G---------A- Thermus_aquaticus -----------C----------A--G-G---G-U----G---------A- Thermomicrobium_roseum -------GG--CUC--------A--G-G---G-----GG---------A- Pirellula_marina -------GG--CUC--------A--G-A---A-U----G---------A- Pirellula_staleyi -------GG--CUC--------A--G-A---A-U----G---------A- Planctomycetaceae_Schlesner_670 -------GG--CUC--------A--G-A---A-U----G---------A- Gemmata_obscuriglobus -----------G----------G--G-A---A-C----G---------A- Isosphaera_pallida -------GG--CUC--------A--G-A---A-U----G---------A- Pyrococcus_abyssi -G-----CC---GG--------A--G-G---C-C--------------A- Pyrococcus_horikoshii -G-----CC---GG--------A--G-G---C-C--------------A- Pyrococcus_furiosus -G-----CC---GG--------A--G-G---C-C--------------A- Thermococcus_celer -G-----CC---GG--------A--G-G---C-C--------------A- Archaeoglobus_fulgidus GC-----C---A-G--------A--G-G---C-C--------------G- Nanoarchaeum_equitans CG------G--G----------A--G-G---C-C--------------A- Aeropyrum_pernix_(str._K1) -G-----CC---GG--------A--C-C---C-G--------------A- Pyrodictium_occultum -G-----CC---GG--------G--C-C---C-G--------------A- Thermoproteus_tenax -G-----CC---GG--------A--C-C---U-G--------------A- Sulfolobus_acidocaldarius -G-----CC---GG--------A--C-C---C-G--------------A- Sulfolobus_solfataricus -G-----CC---GG--------A--C-C---C-G--------------A- Bacteroides_fragilis -G-----CC---GG--------A--C-C---C-G--------------A- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum GG-----C---G-G--------A--G-G---C-C--------------A- Methanococcus_vannielii -G-----CC---GG--------A--G-G---C-U--------------A- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -G-----CC---GG--------A--G-G---C-C--------------A- Natronorubrum_bangense -G-----CC---GG--------A--G-G---U-C--------------A- Natronobacterium_innermongoliae -G-----CC---GG--------A--G-G---U-C--------------A- Haloferax_volcanii -G-----CC---GG--------A--G-G---U-C--------------A- Methanospirillum_hungatei GC-----C---A-G--------A--G-G---C-C--------------A- Picrophilus_torridus_DSM_9790 -G-----CC---GG--------C--G-G---C-C--------------A- Thermoplasma_acidophilum -G-----CC---GG--------C--G-G---U-C--------------A- Giardia_ardeae -G---------G----------A--G-C---G-C--------------G- Giardia_intestinalis -G---------G----------A--G-C---G-C--------------G- Giardia_muris -G---------G----------A--G-U---A-C----U----------- Amblyospora_bracteata GC-----C---U-G--------A--C-A---C-A--------------C- Glomus_sp._W3349 AGGG--AUG---UAUUUAU---U--A-G---A-U---AA---------A- Scutellospora_cerradensis GCU---AAUA-CAUG--CU---AA-A-A---A-U---CCCGAC-----U- Glomus_intraradices GCU---AAUA-CAUG--CU---A--A-A---A-CCUCCG---------A- Smittium_culisetae AG----GGG--GGCAU-UU---A--U-U---A-G----A---------U- Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus GCU---AAUA-CAUG--CU---A--A-A---A-A---CC----------- Tilletia_caries CU----AAUA-CAUG--CUU--AC-A-A---G-C---CCC--------G- Mucor_circinelloides_f._lusitanicus GCU---AAUA-CAUGCAAA---A----A---A-A---CC---------C- Mucor_racemosus GCU---AAUA-CAUGCAAA---A----A---A-A---CC---------C- Rhizopus_oryzae GC-----UA--AUAC--AU---G--C-A---A-A---AA---------A- Mytilus_edulis CC----UCG---CGG-------A--A-A---G----------------A- Placopecten_magellanicus AAA---AGG--CACC--GA---C--U-C---A-C---GG---------A- Echinococcus_granulosus AA----UGG--CUCA--UU---A--A-A---U-C---AGC--------U- Drosophila_melanogaster ------CGA---UCG--CA---A--G-A---U-C---GU---------U- Crossodonthina_koreana CC-----AA--CUU---UC---GG-G-A---A-G----G---------A- Androctonus_australis CC----GAC--CUUC--G----G--G-G---A-C---GA----------- Okanagana_utahensis UU----GGU--GACU---C---U--G-G---A-U--------------A- Artemia_salina CC-----AA--CUUC--AC---G--G-A---A-G----G---------G- Mus_musculus CA-----GA---UC--------A--A-A---A-C---CA---------A- Rattus_norvegicus CA-----GA---UC--------A--A-A---A-C---CA---------A- Homo_sapiens CA-----GA---UC--------A--A-A---A-C---CA---------A- Oryctolagus_cuniculus GGA---UGCG-UGCAU-UU---A--U-C---A-G---AUC--------A- Xenopus_borealis GA----GCG--CUGA--CC---CCCA-G---G-----GA---------U- Xenopus_laevis GA----GCG--CUGA--CC---CCCA-G---G-----GA---------U- Acanthamoeba_castellanii GA----UGG--CUCA--UU---A--A-A---UCA---GU---------U- Balamuthia_mandrillaris AC----CCA--ACGG--UG---A--U-U---C-A----U---------A- Plasmodium_falciparum GC----UAAUACUUG--CU---U--U-A---U-U---AUCC-------U- Plasmodium_falciparum CA----UGCA-AGUG---A---A--A-G---U-A---CA---------U- Plasmodium_vivax GA----GUG---UGU-------A--C-U---U-G---UUA--------A- Plasmodium_vivax AG-----UG--AAA--------G--G-A---U-A--------------U- Plasmodium_vivax AA----CUU--AAGG-------A----A---U-G---AU---------A- Entamoeba_histolytica AU----GCA---UGU--GU---AA-G-U---A-U----A---------A- Ichthyophonus_hoferi GC-----UA--AUAC--AU---GCGA-A---A-A---AA---------C- Dermocystidium_sp. -------GA--CUU--------CU-G-G---A-A--------------G- Sphaerothecum_destruens GCU---AAUA-CAUG--CU---AA-A-A---G-U--------------C- Acanthocoepsis_unguiculata GC-----UA--AUAC--AU---GC-G-A---A-A---AU---------G- Diaphanoeca_grandis GC-----UA--AUAC--AU---GCGA-A---A-A---GG---------C- Allomyces_macrogynus ------GAC--CUUU-------AC-G-G---A-A---GG---------G- Blastocladiella_emersonii AC-----CGC-UUG--------UC-G-G---A-A---GG---------G- Candida_albicans CC----AUG---CAU-------G--U-C---U-A---AGU--------A- Saccharomyces_cerevisiae CU----AAUA-CAUG--CU---U--A-A---A-AU--CUC--------G- Neurospora_crassa GCU---AAUA-CAUG--CU---A--A-A---A-A---CCCC-------G- Podospora_anserina GC-----UA--AUAC--AU---GC-A-A---A------A---------A- Coccidioides_immitis GCU---AAUA-CAUG--CU---A--A-A---A-A---CC----------- Leishmania_major CA----UGG--CUCA-------U--U-AC--A-U---CA---------G- Trypanosoma_cruzi CA----GGA--AUCUG-CGC--AU-G-G---C-UC--AUU--------AC Trypanosoma_brucei UAG---UGG--ACUG--CC---A--U-G---G------C---------G- Pneumocystis_carinii GC-----UA--AUAC--AU---GC-A-A---A-A---AAU--------C- Cryptococcus_neoformans_var._neoformans GCU---AAUA-CAUG--CU---G--A-A---A-A---GC---------C- fungal_contaminant_of_QPX_isolate GCU---AAUA-CAUG--CU---G--A-A---A-A---GC---------C- Ustilago_maydis GC-----UA--AUAC--AU---GC-G-U---A-A---AA---------A- Mnemiopsis_leidyi GC-----UA--AUA---CA---U--G-C---G-A---AAA--------G- Tripedalia_cystophora -C-----GAC-CUC--------U--G-G---A-A---GG---------G- Microciona_prolifera GC-----UA--AUAC--AUGC-AG-A-A---A-C--------------U- Psorospermium_haeckeli GC-----UA--AUAC--AU---A--U-A---A-C---CC---------AU Euglypha_rotunda AC-----UC--UUGC-------G--G-G---G-A---GG---------G- Paulinella_chromatophora AACCU-GGA--CUCU--UGC--G--G-G---A-A---CG---------G- Antirrhinum_majus -C-----GA--CUU--------C--U-G---G-A----A---------G- Sesamum_indicum GC-----UA--AUAC--GU---G--C-A---A-C---AA---------AC Digitalis_grandiflora GC-----UA--AUAC--GU---G--C-A---A-C---AAAC-------C- Plantago_lanceolata -C-----GA--CUU--------C--U-G---G-A----A---------G- Nicotiana_tabacum GC-----UA--AUAC--GU---G--C-A---A-C---AAAC-------C- Arabidopsis_thaliana GC-----UA--AUAC--GU---G--C-A---A-C---AA---------A- Sinapis_alba UACG--UGC--AACA--AACC-C--C-G---A-C---UU----------- Solanum_tuberosum -C-----GA--CUU--------C--U-G---G-A---AG---------G- Fragaria_x_ananassa GC-----UA--AUAC--GU---G--C-A---A-C---AA---------AU Glycine_max GC-----UA--AUAC--GU---G--C-A---A-C---AA---------AC Oryza_sativa AAUACGUGC--AACAA-ACC--C--C-G---A-C---UU----------- Zea_mays AAUACGUGC--AACAA-ACC--C--C-G---A-----CU---------U- F -------------------------------------------------- Genicularia_spirotaenia GCU---AAUA-CAUGCAUU---AA-G-U---C-C---CG---------A- F -------------------------------------------------- Cyanophora_paradoxa GCU---AAUA-CAUG--CA---AC-A-A---A-U---CCC--------G- Glaucocystis_nostochinearum AC----UUC--UGGA-------AG-G-G---A-U--------------G- Gloeochaete_wittrockiana CU----AAUA-CAUGCACC---G--A-G---A-C---CC---------G- FChlorella'_luteoviridis ------CGAC-UUCG---C---G--G-A---A-G----G----------- Oxytricha_longa GC-----UA--AUA---CA---U--G-C---U-G---GUU--------A- Paraurostyla_weissei GC-----UA--AUAC--AU---GCUG-G---U-U---AG---------C- Cyrtohymena_citrina GC-----UA--AUA---CA---U--G-C---U-G---GUU--------A- Gastrostyla_steinii GCU---AAUA-CAUG--CU---GU-U-A---A-G---CC----------- Pleurotricha_lanceolota GCU---AAUA-CAUG--CU---GU-U-A---A-G---CC----------- Onychodromus_quadricornutus GC-----UA--AUAC--AU---G--C-U---G-U---UAA--------G- Stylonychia_lemnae GC-----UA--AUAC--AU---GCUG-U---U-A---AG---------C- Stylonychia_mytilus GCUA--AUAC-AUGCUGUU---A----A---G-C---CC---------A- Engelmanniella_mobilis GC-----UA--AUA---CA---U--G-C---U-G---GUU--------A- Oxytricha_granulifera GC-----UA--AUAC--AU---G--C-U---G-G---UUA--------G- Oxytricha_granulifera GC-----UA--AUAC--AU---G--C-U---G-U---UUA--------G- Uroleptus_gallina GC-----UA--AUA---CA---U--G-C---U-G---GUU--------A- Uroleptus_pisces GC-----UA--AUAC--AU---G--C-U---G-G---UUA--------G- Paruroleptus_lepisma GC-----UA--AUAC--AU---GC-U-G---G-U---UA---------G- Urostyla_grandis GC-----UA--AUAC--AU---G--C-U---G-G---UUA--------G- Balantidium_coli GC-----CA---UG----C---A--U-G---U-C---UA---------A- Euplotes_aediculatus CA----AGG---UCU-------A--------C-UG--AG---------A- Tetrahymena_thermophila CU----AAUA-CAUG--CUU--A--A-A---A-U---UC---------C- Bangia_sp._(Northwest_Territories/NWT) UA----AUAC-AUGC--CUC--AACG-C---C-C---GA---------C- Bangia_sp._(Virgin_Islands/VIS7) CU-----GA--CUU---UU---G--U-G---G-A---AG---------G- Erythrotrichia_carnea CU----AAUA-CAUG--CCU--AC-A-C---G-C---CC---------G- Rhodochaete_parvula AA----UAC---GUG--CCU--AC-A-C---G-C---CC---------G- Compsopogon_coeruleus GC-----UA--AUAC--AU---GC-C-U---A-C---AG---------A- Porphyridium_aerugineum GC-----UA--AUA---CA---U--G-C---G-CC--AA---------C- Rhodella_maculata GC-----UA--AUA---CG---U--G-C---C-U----C---------A- Aulacoseira_ambigua CU----AAUA-CAUGCGUC---A--A-G---A-----UC----------- Aulacoseira_baicalensis GC-----UA--AUA---CA---U--G-C---G-----UC---------A- Stephanopyxis_nipponica GC-----UA--AUA---CA---U--G-C---A-U---CA---------A- Coscinodiscus_radiatus CU----AAUA-CAUGC-GC---A--A-A---G-U---CUU--------G- Corethron_criophilum GC-----UA--AUAC--AUGC-A--A-A---A-A---UACCUGACCUUU- Amphora_cf._capitellata GC-----UA--AUAC--AU---GC-G-UC--A-A----U---------A- Sellaphora_pupula_f._capitata GC-----UA--AUA---CA---U--G-C---G-UC--AAU--------A- Thalassiosira_antarctica GC-----UA--AUA---CA---U--G-C---G-U---CA---------AU Encyonema_triangulatum GC-----UA--AUA---CA---U--G-C---G-U---CA---------A- Achnanthes_bongranii GC-----UA--AUA---C----A--U-GC--G-U---CGA--------U- F -------------------------------------------------- Diatoma_tenue GC-----UA--AUA---CA---U--G-C---G-U---CA---------AU Grammatophora_marina GC-----UA--AUA---CA---U--G-C---G-U---CAA--------U- Thalassionema_sp._p474 GC-----UA--AUA---CA---U--G-C---G-UC--AA---------C- Rhaphoneis_belgicae UA----ACAC-AUGC--AUC--A--A-U---A-C---CC---------G- Undatella_sp._p446 GC-----UA--AUAC--AU---GCGU-C---A-A---UACU-------C- Cymatosira_belgica CU----AAUA-CAUGC-AU---C--A-AU--A-C---CC---------A- Odontella_sinensis GC-----UA--AUA---CA---U--G-C---A-UC--AA---------C- Ditylum_brightwellii GC-----UA--AUA---CA---U--G-C---A-UC--AAU--------A- Lithodesmium_undulatum GC-----UA--AUA---CA---U--G-C---A-UC--AAUA-------C- Thalassiosira_eccentrica GC-----UA--AUA---CA---U--G-C---A-U---CA---------AU Thalassiosira_pseudonana GC-----UA--AUA---CA---U--G-C---A-U---CA---------AU Skeletonema_costatum UA----AUA---UAU--GCAUCA--A-A---G-C---GG---------A- Pleurosira_cf._laevis GC-----UA--AUA---CA---U--GCA---U-C---AAUA-------C- Lauderia_borealis UA----AUAC-AUGC--AUC--A--U-G---A-CC--CGAC-------U- F -------------------------------------------------- Bolidomonas_mediterranea GC-----UA--AUA---CA---U--G-C---G-U---AAA--------C- Bolidomonas_pacifica CC----AAC--UGUU--CG---C--G-G---A-C---GGG--------U- Labyrinthuloides_minuta GC-----UA--AUA---C----A--U-G---C-AA--CAA--------A- Leptocylindrus_danicus GC-----UA--AUAC--AU---G--C-GUCAA-UG--CUC--------A- Chaetoceros_sp. GC-----UA--AUA---CA---U--GCG---U-A---AAC--------AC Aphanomyces_invadans GC-----UA--AUAC--AUGC-AU-A-A---A-UACCCAA--------C- Lagenidium_giganteum GC-----UA--AUAC--AU---GC-G-C---A-A---AUAC-------C- Melosira_varians CU----AAUA-CAUGC-AU---A--A-A---A-A---UCU--------G- Blastocystis_hominis GC-----UA--AUAC--AU---G--A-G---------AAA--------G- Perkinsus_marinus GC-----UA--AUAC--AU---GC---G---U-C----AA--------G- Toxoplasma_gondii CU----AAUA-CAUG--CG---C--A-C---A-U---GCC---------- Alexandrium_fundyense GU-----UA--AUAC--AU---G----C---A-C---UAA--------A- Babesia_bigemina -----------A----------A--A-G---A------UU--------A- Babesia_canis GC----UAA---UUG---U---A--G-G---------GCU--------A- Babesia_sp._'Oklahoma_dog' UU----CCA---UGG--AU---A----A---C-C---GUG--------C- Babesia_microti GCU---AAUA-CAUG--CU---C--G-A---G-G---CGCG-------U- Babesia_microti GCU---AAUA-CAUG--CUC--G--A-G---G-CG--CGU--------U- Babesia_microti GC-----UA--AUAC--AU---G--C-U---C-G---AGGC-------GC Babesia_microti GCU---AAUA-CAUG--CU---C--G-A---G-G----CG--------C- Babesia_microti GCU---AAUA-CAUG--CU---C--G-A---G-G----CG--------C- Babesia_rodhaini GC-----UA--AUAC--AU---G--C-A---U-G---UGC---------- Babesia_gibsoni GC-----UA--AUA---CA---U--G-A---U-CG--AGG--------U- Babesia_bovis -A---------A----------A----G---A-C--------------U- Jakoba_libera GC-----UA--AUA----C---A----U---G-C---ACA--------A- Reclinomonas_americana AC----CAGA-GCUA--AU---A--C-A---U-GCACAAACU------C- Bonamia_ostreae CG----GAU--AACC--GU---A--G-U---A-A---CCU--------A- Audouinella_dasyae AG-----AG---CU--------A--------A-U----AC---------- Audouinella_hermannii GC-----UA--AUA---C----G--U-G---C-C----AC--------A- Nemalion_helminthoides GC-----UA--AUA--------C--G-U---G-C----CA--------C- Batrachospermum_gelatinosum GC-----UA--AUA---C----G--U-G---C-C---AAAACG-----C- Nemalionopsis_tortuosa GC-----UA--AUA---C----G--U-G---C-C----AA--------C- Thorea_hispida GC-----UA--AUA----C---G--U-G---G-----GAA--------A- Thorea_violacea GC-----UA--AUA----C---G--U-G---G-----GAA--------A- Thorea_violacea GC----UAA--CUUA--CUA--CUCG-G---A-U---AACCGU-----A- Thorea_violacea GC----UAA--CUUA--CUA--CUCG-G---A-U---AACCGU-----A- Nemalionopsis_shawii GC-----UA--AUA---C----G--U-G---C-C----AA--------C- Balbiania_investiens GC-----UA--AUA---C----G--U-G---C-C----GC--------A- Batrachospermum_macrosporum GC-----UA--AUA---C----G--U-G---C-C----AU--------C- Ahnfeltia_plicata GC-----UA--AUA---C----G--U-G---C-C--------------G- Corallina_officinalis GC-----UA--AUA--------C--G-U---G-----CCA---------- Rhodogorgon_carriebowensis GU----AGU--AAUU--CU---A--GAG---C-U---AAUAC------G- Bonnemaisonia_hamifera AUG---GUA--AUACU-AC---U--C-G---GAU---AACC-------G- Gelidium_vagum AU----GGU--AACUC-UAC--U--C-G---GAU---AACC-------G- Chondrus_crispus GC-----UA--AUA---CA---A--G-C---C-U---UAA--------A- Halymenia_plana AU----GGUA-AACU--AC---UC-G-GA--U-A---ACC--------G- Rhodymenia_leptophylla GC-----UA--AUA---CG---U--G-C---C-A---CAA--------GA Plocamiocolax_pulvinata GC-----UA--AUA--------C--G-U---G-CCACUAA--------A- Ceramium_rubrum AG-----AG---CU--------A----A---A-U----AC---------- Gracilariopsis_sp. GC-----UA--AUA---CG---U----G---C-C---UAC--------A- Bostrychia_moritziana AA----AUA--CUAC--UC---G--GAU---A-A----CC---------- Hildenbrandia_rubra GA---------G----------C--U-A---A-------U---------- Dixonielloa_grisea AA----UAC---GUG--AUAU-G--U-A---G-C---CCG---------- Naegleria_fowleri UA----AGG---CCU---U---U--C-A---G-----GUU--------U- Naegleria_gruberi UA----AGG---CCU-------U--------U-C-----A--------G- Hexamita_sp. GU-----GA--AAC--------U--G-C---G-----AAC---------- Tritrichomonas_foetus UC----AGG---UCU-------U--------A------UU---------- Amblyospora_khaliulini CC---------U----------G--A-C---G------UG--------G- Edhazardia_aedis GC---------C----------U--G-AC--G-U---GGA---------- Amblyospora_connecticus CC---------U----------G--A-C---G------UG--------G- Intrapredatorus_barri CC---------U----------G--A-C---G------UG--------G- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. CC---------U----------G--A-C---G------UG--------G- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii GC-----C---U-G--------A--C-G---U-G--------------G- Weiseria_palustris GC-----C---U-G--------A--C-G---U-G--------------G- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani GC-----C---U-G--------A--C-G---U-G--------------G- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae CC-----UG--AUA--------U----------------G--------U- Thelohania_solenopsae ------GCC--UGGU-------A---------------UG--------U- Visvesvaria_acridophagus CC-----UG--UUA--------U----------------A--------U- Bacillidium_sp. CC-----U---G-A--------C--G-U---A----------------U- Pseudonosema_cristatellae CC---------U----------G--A-C---G-----UAU---------- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum GC-----C---U-G--------A--C-G---U-G--------------G- Pleistophora_mirandellae -G-----CC--UGG--------C--G-U---G----------------G- Trachipleistophora_hominis GC-----C---U-G--------A--C-G---U-G--------------G- Vavraia_culicis GC-----C---U-G--------A--C-G---U-G--------------G- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii GC-----C---U-G--------A--C-G---U-G--------------G- F -------------------------------------------------- Dictyocoela_gammarellum GC-----C---U-G--------A--C-G---U-G--------------G- Microsporidium_prosopium GU---------G----------A--C-G---U-G--------------G- Antonospora_scoticae GC-----C---U-G--------A--C-G---U-G--------------U- Paranosema_whitei GU---------G----------A--C-G---U-G--------------U- #=GC SS_cons ......<<<...>>>..>>......<.<...<.<..............<. Cynomorium_coccineum ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- Cytinus_ruber ----A--C--G--C-U---G-----G-U---G--G--C-A----U-G--- Nicotiana_tabacum ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- Spinacia_oleracea ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- Zea_mays ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- Marchantia_polymorpha ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- Ricinus_communis ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- F ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- Prototheca_wickerhamii ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- Pedinomonas_minor ----A--C--G--C-U---G-----G-C---G--G--U-A----U-G--- Nephroselmis_olivacea ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- Pyramimonas_parkeae ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- Chlamydomonas_reinhardtii ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- Acanthamoeba_castellanii ----A--C--G--C-U---G-----G-U---A--A--C-A----U-A--U Pilostyles_thurberi ----U--CGGG--U-U---------U-C---G--GGCUCA----U-G--- Chondrus_crispus ----A--C--G--C-U---A-----G-U---G--G--U-U----A-G--- Toxoplasma_gondii ----A--C--G--C-A---A-----G-A---G--A--U-G----U-G--- Neurospora_crassa ----U--U--G--U-G---G-----C-U---U--A--A-GC---U-A--- Podospora_anserina ----A--C--A--C-U---G-----U-C---C--A--A-A----U-A--- Penicillium_chrysogenum ----A--C--A--C-U---G-----U-C---C--A--A-G----U-A--- Emericella_nidulans ----A--C--G--C-U---G-----U-C---C--A--A-G----U-A--- Saccharomyces_cerevisiae ----A--U--U--A-A---GCGCUAA-A---U--A--A-G----G-A--- Williopsis_saturnus_var._mrakii ----A--A--UA-C-U---A-----U-A---U--A--G-A----G-A--- Pedinomonas_minor ----A--A--A--U-U---U-----U-U---U--A--U-A----C-A--- Plasmodium_falciparum ----A--C--G--C-U---A-----G-A---A--A--U-A----U-A--- Babesia_bovis ----A--C--G--C-U---U-----A-A---G--A--C-G----U-A--C Tetrahymena_pyriformis ----A--C--G--C-U---A-----A-U---U--A--G-A----C-G--- Suillus_sinuspaulianus ----A--U--A--U-U---A-----U-U---C-----U-A----A-G--- Paramecium_tetraurelia ----A--C--G--C-U---A-----A-U---C--A--A-A----U-G--- Dictyostelium_discoideum ----A--U--G--C-U---A-----U-C---A--G--U-G----G-G--- Physarum_polycephalum ----U--C--G--C-U---G-----A-A---U--G--U-A------A--- Pylaiella_littoralis ----A--G--G--C-U---A-----U-A---A--G--U-C----U-G--- Prototheca_wickerhamii ----A--C--G--C-U---A-----G-C---C--G--U-A----G-G--- Hydnora_africana ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- Codium_fragile ----A--C--G--C-U---G-----G-C---G--A--U-A----U-G--- Caulerpa_sertularioides ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- F ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- F CUUCU--U--G--UAUAA-GUG---G-C---G--GA-C-GGG--U-G--- Glaucocystis_nostochinearum ----A--C--G--C-U---G-----G-C---G--G--U-A----U-G--- Gloeochaete_wittrockiana ----A--C--G--C-U---G-----G-C---G--G--U-A----U-G--- Cyanophora_paradoxa ----A--C--G--C-U---G-----G-C---G--G--U-A----U-G--- Cyanophora_paradoxa ----A--C--G--C-U---G-----G-C---G--G--U-A----U-G--- Cryptomonas_sp. ----A--C--G--C-U---G-----G-C---G--G--U-A----U-G--- Palmaria_palmata ----A--C--G--C-U---G-----G-C---G--G--U-A----U-G--- Heterosigma_akashiwo ----A--C--G--C-U---G-----G-C---G--G--U-A----U-G--- Skeletonema_pseudocostatum ----A--C--G--C-U---G-----G-C---G--G--U-A----U-G--- Pylaiella_littoralis ----A--C--G--C-U---G-----G-C---G--G--U-A----U-G--- Cyanidium_caldarium ----A--C--G--C-U---G-----G-C---G--G--U-A----U-G--- Emiliania_huxleyi ----A--C--G--C-U---G-----G-C---G--G--U-A----U-G--- Euglena_gracilis ----A--C--G--C-U---G-----G-C---G--G--U-A----U-G--- Anabaena_sp. ----A--C--G--C-U---G-----G-C---G--G--U-A----U-G--- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- F -------------------------------------------------- Oscillatoria_agardhii ----A--C--G--C-U---G-----G-C---G--G--U-C----U-G--- Pleurocapsa_sp. ----A--C--G--C-U---G-----G-C---G--G--U-A----U-G--- Microcystis_aeruginosa ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos ----A--C--G--C-U---UU----A-U---U--A--U-G----G-G--A Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae ----G--C--C--C-U---A-------C---G--A--U-G----C-G--- Streptococcus_pyogenes ----A--U--G--C-C---C-------U---A-----C-GA---U-G--- Bacillus_anthracis ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Bacillus_cereus ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Enterococcus_faecalis ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Enterococcus_faecium ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Listeria_monocytogenes ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Bacillus_subtilis ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Bacillus_subtilis_A ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Bacillus_halodurans ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Staphylococcus_aureus ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Staphylococcus_aureus_N315 ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Lactococcus_lactis_subsp._lactis ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptococcus_pyogenes ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Lactobacillus_acidophilus ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Mycoplasma_capricolum ----A--C--G--C-U---G-----G-C---G--G--C------U-G--G Mycoplasma_mycoides ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- Erysipelothrix_rhusiopathiae_(alpha-P15) ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Clostridium_innocuum ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- Mycoplasma_genitalium ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- Mycoplasma_pneumoniae ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- Mycoplasma_pneumoniae ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- Mycoplasma_gallisepticum ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- Ureaplasma_urealyticum ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- Ureaplasma_urealyticum ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- Mycoplasma_hyopneumoniae ----A--C--G--C-U---A-----G-C---U--G--U-G----U-G--- Fusobacterium_necrophorum ----A--C--G--C-U---G-----A-C---A--G--A-A----U-G--G Fusobacterium_nucleatum_subsp._nucleatum ----A--C--G--C-U---G-----A-C---A--G--A-A----U-G--- Streptobacillus_moniliformis ----A--C--G--C-U---G-----A-C---A--G--A-A----U-G--- Clostridium_botulinum_type_f ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Clostridium_tetani ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Clostridium_perfringens ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Clostridium_difficile ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Eubacterium_brachy ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Epulopiscium_sp. ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Heliobacterium_chlorum ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- Glycine_max ----A--C--G--C-U---A-----G-C---U--A--U-A----U-G--- Oenothera_berteroana ----A--C--G--C-U---A-----G-C---U--A--U-A----U-G--- Secale_cereale ----A--C--G--C-U---A-----G-C---U--A--U-A----U-G--- Triticum_aestivum ----A--C--G--C-U---A-----G-C---U--A--U-A----U-G--- Zea_mays ----A--C--G--C-U---A-----G-C---U--A--U-A----U-G--- Marchantia_polymorpha ----A--C--G--C-U---A-----G-C---G--A--U-A----U-G--- Nephroselmis_olivacea ----A--C--G--C-U---A-----G-C---C--A--U-A----G-G--- Gluconacetobacter_liquefaciens ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- Bradyrhizobium_japonicum ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Rhodoblastus_acidophilus ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Azorhizobium_caulinodans ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Bartonella_quintana ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Mesorhizobium_loti ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Agrobacterium_tumefaciens ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Bartonella_bacilliformis ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Bartonella_henselae ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Brucella_melitensis ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Rhodobium_orientis ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- F -------------------------------------------------- Rickettsia_bellii ----A--C--G--C-U---A-----U-C---G--G--U-A----U-G--- Rickettsia_felis_URRWXCal2 ----A--C--G--C-U---A-----U-C---G--G--U-A----U-G--- Rickettsia_prowazekii ----A--C--G--C-U---A-----U-C---G--G--U-A----U-G--- Rickettsia_prowazekii_(str._Madrid_E) ----A--C--G--C-U---A-----U-C---G--G--U-A----U-G--- Rickettsia_rickettsii ----A--C--G--C-U---A-----U-C---G--G--U-A----U-G--- Acinetobacter_calcoaceticus ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Psychrobacter_pacificensis ----U--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Chromohalobacter_marismortui ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- F -------------------------------------------------- Pseudomonas_aeruginosa ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Pseudomonas_aeruginosa ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Pseudomonas_sp. ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Pseudomonas_putida ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Coxiella_burnetii ----A--C--G--C-U---A-----G-C---G--G--C-A----U-G--- Methylococcus_capsulatus ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- Legionella_pneumophila ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- Legionella_pneumophila ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- Allochromatium_vinosum ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- Beggiatoa_sp._1401-13 ----A--C--G--C-U---G-----G-C---G--G--U-A----U-G--- Aeromonas_hydrophila ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Shewanella_putrefaciens ----A--C--G--C-U---G-----G-C---G--G--C-G----G-G--- Citrobacter_freundii ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Shigella_dysenteriae ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Klebsiella_pneumoniae ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Plesiomonas_shigelloides ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Yersinia_pestis ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- F -------------------------------------------------- Shigella_dysenteriae ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Escherichia_coli_O157:H7 ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Escherichia_coli_O157:H7_EDL933 ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Escherichia_coli ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Escherichia_coli_K12 ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Escherichia_coli ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Escherichia_coli ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Escherichia_coli ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Salmonella_typhimurium ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Serratia_marcescens ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Edwardsiella_tarda ----G--C--C--C-U---AC----GAU---GC-G--U-AAC--G-G--- Proteus_vulgaris ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Vibrio_cholerae ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Vibrio_cholerae ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Vibrio_cholerae ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Vibrio_cholerae ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Vibrio_cholerae ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Vibrio_cholerae ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- F -------------------------------------------------- Haemophilus_influenzae ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Haemophilus_influenzae ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Haemophilus_influenzae ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Haemophilus_influenzae ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Haemophilus_influenzae_(operons_A-F) ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Pasteurella_multocida ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Pasteurella_multocida ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Xanthomonas_albilineans ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Xanthomonas_campestris ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Xylella_fastidiosa ----A--C--G--C-U---G-----G-C---G--G--C-A----G-G--- Dichelobacter_nodosus ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- Francisella_tularensis ----A--C--G--C-U---G-----G-U---G--G--C-A----U-G--- Bordetella_parapertussis ----A--C--G--C-U---G-----G-C---G--G--G-A----U-G--- Bordetella_pertussis ----A--C--G--C-U---G-----G-C---G--G--G-A----U-G--- Bordetella_bronchiseptica ----A--C--G--C-U---G-----G-C---G--G--G-A----U-G--- unidentified_proteobacterium ----G-----G--C-U---C-----A-U---G--CC-C-A----U-G--- Burkholderia_mallei ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- Burkholderia_sp. ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- Comamonas_testosteroni ----A--C--G--C-U---G-----G-C---G--G--C-A----U-G--- Desulfovibrio_desulfuricans ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Myxococcus_xanthus ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Deferribacter_thermophilus ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Borrelia_burgdorferi ----A--C--G--C-U---G-----G-C---A--G--U-G----C-G--- Borrelia_burgdorferi ----A--C--G--C-U---G-----G-C---A--G--U-G----C-G--- Borrelia_hermsii ----A--C--G--C-U---------GUC---A--G--U-G----C-G--- Spirochaeta_aurantia ----A--C--G--C-U---G-----G-C---G--G--C-A----C-G--- Treponema_pallidum_(rRNA_A) ----A--C--G--C-U---G-----G-C---G--G--U-G----C-G--- Leptonema_illini ----A--C--G--C-U---G-----G-C---G--G--C-G----C-G--- Leptospira_interrogans ----A--C--G--C-U---G-----G-C---G--G--C-G----C-G--- Chlamydia_trachomatis_D/UW-3/CX ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Chlamydia_trachomatis_L2/434/BU ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Chlamydia_muridarum ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Chlamydophila_pneumoniae_AR39 ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Chlamydophila_pneumoniae ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Chlamydophila_pneumoniae_J138 ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- F -------------------------------------------------- Chlamydophila_psittaci ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Deinococcus_radiodurans ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Deinococcus_radiodurans ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Bacteroides_fragilis ----A--C--G--C-U---A-----G-C---U--A--C-A----G-G--- Porphyromonas_gingivalis ----A--C--G--C-U---A-----G-C---G--A--U-A----G-G--- Prosthecochloris_vibrioformis ----A--C--G--C-U---G-----G-C---G--C--C-U----U-G--- Campylobacter_jejuni ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Campylobacter_jejuni ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Campylobacter_sputorum ----A--U--G----U---A-----G-C---U-----C------U-U--- F -------------------------------------------------- Helicobacter_pylori_J99 ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Helicobacter_pylori ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Acidobacterium_capsulatum ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Holophaga_foetida ----A--C--C--C-U---G-----G-C---G--G--C-G----U-G--- Arthrobacter_globiformis ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Micrococcus_luteus ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Frankia_sp. ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_bottropensis ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_scabiei ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_neyagawaensis ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- F -------------------------------------------------- Streptomyces_sp. ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_acidiscabies ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_griseus ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_ornatus ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_subrutilus ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_bikiniensis ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_galbus ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_hygroscopicus ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_lincolnensis ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_coelicolor ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_tendae ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_ambofaciens ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_eurythermus ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_nodosus ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_sampsonii ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_glaucescens ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_pseudogriseolus ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_caelestis ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_bluensis ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_espinosus ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_mashuensis ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_rimosus ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_limosus ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_odorifer ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_felleus ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_albidoflavus ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_gougerotii ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_rutgersensis ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_intermedius ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- F -------------------------------------------------- Streptomyces_thermoviolaceus ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_megasporus ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Streptomyces_thermolineatus ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Mycobacterium_tuberculosis -------C--G--------------G-C---G--G--C-G----U-G--- Mycobacterium_tuberculosis -------C--G--------------G-C---G--G--C-G----U-G--- Mycobacterium_avium -------C--G--------------G-C---G--G--C-G----U-G--- Mycobacterium_leprae ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Mycobacterium_leprae ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Rhodococcus_erythropolis ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Corynebacterium_diphtheriae ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Actinomyces_israelii ----G--C--C--C-U---A-------C---G--A--U-G----C-G--- Brachyspira_hyodysenteriae ----G--C--G--U-U---G-----G-C---G--A--U-G----C-G--- Geotoga_subterranea ----A--C--G--C-U---G-----G-C---G--G--C-G----C-G--- Petrotoga_miotherma ----A--C--G--C-U---C-----G-C---G--G--C-G----U-G--- Brevinema_andersonii ----A--C--G--C-U---G-----G-C---A--G--C-G----U-G--- Herpetosiphon_aurantiacus ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- F -------------------------------------------------- Aquifex_aeolicus ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Aquifex_pyrophilus ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Thermotoga_maritima ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Thermotoga_maritima ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Thermus_aquaticus ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Thermomicrobium_roseum ----A--C--G--C-U---G-----G-C---G--G--C-G----U-G--- Pirellula_marina ----A--C--G--U-U---G-----G-C---G--G--C-A----U-G--- Pirellula_staleyi ----A--C--G--U-U---G-----G-C---G--G--C-A----U-G--- Planctomycetaceae_Schlesner_670 ----A--C--G--U-U---G-----G-C---G--G--C-G----U-G--- Gemmata_obscuriglobus ----A--C--G--U-U---G-----G-C---G--G--C-A----U-G--- Isosphaera_pallida ----A--C--G--U-U---G-----G-C---G--G--C-G----U-G--- Pyrococcus_abyssi ----C--U--G--C-U---A-----U-G---G--G--G-G----U-C--C Pyrococcus_horikoshii ----C--U--G--C-U---A-----U-G---G--G--G-G----U-C--C Pyrococcus_furiosus ----C--U--G--C-U---A-----U-G---G--G--G-G----U-C--C Thermococcus_celer ----C--U--G--C-U---A-----U-G---G--G--G-G----U-C--C Archaeoglobus_fulgidus ----C--U--G--C-U---A-----U-C---C--G--G-CU---G-G--G Nanoarchaeum_equitans ----C--C--G--C-U---A-----U-C---U--C--C-G----U-C--C Aeropyrum_pernix_(str._K1) ----C--C--G--C-U---A-----U-C---G--G--G-GU---A-G--G Pyrodictium_occultum ----C--C--G--C-U---A-----U-C---G--G--G-GU---G-G--G Thermoproteus_tenax ----C--C--G--C-U---A-----U-C---G--G--G-GU---G-G--G Sulfolobus_acidocaldarius ----C--C--G--C-U---A-----U-C---G--G--G-GU---A-G--G Sulfolobus_solfataricus ----C--C--G--C-U---A-----U-C---G--G--G-GU---A-G--G Bacteroides_fragilis ----C--C--G--C-U---A-----U-C---G--G--G-GU---G-G--G F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum ----C--U--G--C-U---A-----U-U---G--G--G-UU---U-C--G Methanococcus_vannielii ----C--U--G--C-U---A-----U-U---G--G--G-GU---U-C--G F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. ----U--U--G--C-U---A-----U-C---G--G--A-GU---C-C--G Natronorubrum_bangense ----U--U--G--C-U---A-----U-U---G--G--A-GU---C-C--G Natronobacterium_innermongoliae ----U--U--G--C-U---A-----U-U---G--G--A-GU---C-C--G Haloferax_volcanii ----U--U--G--C-U---A-----U-U---G--G--G-GU---C-C--G Methanospirillum_hungatei ----C--U--G--C-U---A-----U-C---G--G--G-G----U-U--U Picrophilus_torridus_DSM_9790 ----C--U--G--C-U---A-----U-C---A--A--G-UU---C-C--G Thermoplasma_acidophilum ----C--U--G--C-U---A-----U-C---A--G--G-UU---C-C--G Giardia_ardeae ----A--C--G--C-U---C-----G-C---C--C--C-AA---G-G--A Giardia_intestinalis ----A--C--G--C-U---C-----U-C---C--C--C-AA---G-G--- Giardia_muris ----A--C--G--C-U---A-------C---C--C--C-A----A-G--G Amblyospora_bracteata ----A--C--G--C-U---C-----G-U---C--C--C-A----A-A--G Glomus_sp._W3349 ----A--A--A--C-C---A-----A-CA--G--C--U-G----G-G--- Scutellospora_cerradensis ----U--C--U--G-G---A-----A-----G--G--G-A----U-G--U Glomus_intraradices ----C--U--U--C-U---G-----G-AA--G--G--G-GG---U-G--U Smittium_culisetae ----A--A--A--A-A---ACCAAUG-G---G--G--G-C----A-A--- Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus ----U--C--GA-C-U---------U-C---G--GA-A-G----G-G--- Tilletia_caries ----A-----C--U-U---C-----U-U---G--GA-A-G----G-G--- Mucor_circinelloides_f._lusitanicus ----A--A--A--C-U---------U-A---C--G--A-A----U-G--- Mucor_racemosus ----A--A--A--C-U---------U-A---C--G--A-A----U-G--- Rhizopus_oryzae ----G--C--C--C-U---GAC---U-UAC-G--A--A-G----G-G--- Mytilus_edulis ----G--C--G--------C-----GUU---U--A--U-U----A-G--- Placopecten_magellanicus ----G--G--U--G-C---G-----A-U---U--U--U-AUC--A-G--U Echinococcus_granulosus ----A--U--G--G-U---UUA---U-U---G--G--A-U----C-G--- Drosophila_melanogaster ----A--U--A--U-U---G-----G-U---U--G--A-A----C-U--- Crossodonthina_koreana ----G--C--G--C-U---U-------U---U--A--U-U----A-G--- Androctonus_australis ----G--C--G--C-----A-----U-U---U--A--U-U----A-G--- Okanagana_utahensis ----A--C--UU-U-U---A-----G-C---C--G--A-U----C-G--- Artemia_salina ----G--U--G--C-U---U-------U---U--A--U-U----A-G--- Mus_musculus ----C--C-----C-G---GU----G-A---G--C--U-CCC--U----- Rattus_norvegicus ----C--C-----C-G---G-----U-C---A--G--C------------ Homo_sapiens ----C--C-----C-G---G-----U-C---A--G--C------------ Oryctolagus_cuniculus ----A--A--A--C-C---A-----A-C------C--C------G-G--- Xenopus_borealis ----G--C--G--U-GC--A-----U-U---U--A--U-C----A-G--- Xenopus_laevis ----G--C--G--U-GC--A-----U-U---U--A--U-C----A-G--A Acanthamoeba_castellanii ----A--UAGG--U-U---AU----U-U---G--A--U-GGU--C-U--- Balamuthia_mandrillaris ----A--------U-A---------A-C---U--C--U-A----U-C--- Plasmodium_falciparum ----U--G--A--U-U---U-----U-U---A--U--C-UU---U-G--- Plasmodium_falciparum ----A--U--G--U-A---A--------------G---------U-A--A Plasmodium_vivax ----G--C-----C-U---U-----U-U---A--A--G-A----A-A--- Plasmodium_vivax ----A--C--G--CAU---A-----U-A---U--U--U-G----C-A--- Plasmodium_vivax ----A--C--A--A-A---GAA---G-U---G--A--C-ACA--U-A--- Entamoeba_histolytica ----A--G--A--C-C---AA----G-U---A--G--G-A----U-G--- Ichthyophonus_hoferi ----C--CG-A--C-U---U-----C-U---G--G--A-A----G-G--G Dermocystidium_sp. ----G--G--A--U-GU--A-----U-U---U--A--U-U----A-G--- Sphaerothecum_destruens ----C--CG-A--C-U---U-----U-UC--G--G--A-AGGGAU-G--U Acanthocoepsis_unguiculata -------C--C--C-G---ACU---UCU---G--G--A-A----G-G--G Diaphanoeca_grandis ----C--CG-A--C-U---GG----U-U---G--G--G-A----G-G--G Allomyces_macrogynus ----A--U--G--C-----A-----G-U---U--A--U-U----A-GA-U Blastocladiella_emersonii ----A--U--G--C-----A-----G-U---U--A--U-U----A-GA-U Candida_albicans ----U--A--A--G-C---AA----U-U---U--A--U-A----C-A--G Saccharomyces_cerevisiae ----A--C-----C-C---U-----U-U---G--G--A-A----G-A--G Neurospora_crassa ----A-----C--U-U---C-----------G--G--A-A----G-G--G Podospora_anserina ----A--U--C--C-C---GAC---U-UC--G--G--A-A----G-G--G Coccidioides_immitis ----U--C--GA-C-U---------U-C---G--G--A-A----G-G--G Leishmania_major ----A--C--G--U-A---A-----U-C---U--G--C-C---------G Trypanosoma_cruzi ----A--U--C--A-G---AC----G-UAA-U--C--U-GC---C-G--C Trypanosoma_brucei ----U--U--G--A-C---GG----G-A---GC-G--G-G----G-G--- Pneumocystis_carinii ----C--C--GA-C-U---U-----UAU---G--G--A-A----G-G--G Cryptococcus_neoformans_var._neoformans ----C--C--GA-C-U---U-----C-U---G--G--A-A----G-G--G fungal_contaminant_of_QPX_isolate ----C--C--GA-C-U---U-----C-U---G--G--G-A----G-G--G Ustilago_maydis ----G--C--C--C-C---GACU--UCU---G--G--A-A----G-G--G Mnemiopsis_leidyi ----U--C--C--C-G---A-----C-U---U--C--U-G------G--A Tripedalia_cystophora ----A--U--G--U-A---U-------U---U--A--U-U----A-G--A Microciona_prolifera ----C--C--C--G-ACC-UC------U---G--G--A-A----G-G--G Psorospermium_haeckeli G---A--A--G--C-----CU----G-C---U--U--U-A----A-GG-G Euglypha_rotunda ----A--U--G--U-A---U-------U---U--A--U-U----A-GA-U Paulinella_chromatophora ----G--U--G--U-A---U-----U-UA--U--U--A-G----A-U--- Antirrhinum_majus ----G--G--A--C-G---C-----AUU---U--A--U-U----A-G--A Sesamum_indicum C---C--C--GA-C-U---U-----C-U---G--G--A-AGGGAU-G--C Digitalis_grandiflora ----C--C--G--A-C---UU----C-U---G--G--A-AGGGAU-G--C Plantago_lanceolata ----G--G--A--U-G---C-----AUU---U--A--U-U----A-G--A Nicotiana_tabacum ----C--C--G--A-C---UU----C-U---G--G--A-AGGGAU-G--C Arabidopsis_thaliana ----C--C--CC-G-A---CUU---A-U---G--G--A-A----G-G--G Sinapis_alba ----C--U--G--G-A---A-----------G--G--G-A----U-G--C Solanum_tuberosum ----GA-U--G--C-A---U-----U-U---A--U--U------A-G--A Fragaria_x_ananassa ----C--CC-G--A-C---UU----C-U---GA-G--A-AGGGAU-G--C Glycine_max C---C--C--GA-C-U---U-----C-U---G--G--A-AGGGAU-G--C Oryza_sativa ----C--C--G--G-G---A-----G-G---G--G--C--------G--C Zea_mays ----C--C--G--G-G---A-----G-G---G--G--C--------G--C F -------------------------------------------------- Genicularia_spirotaenia ----CC-U--U--U-G---G-----A-A---G--G--G-A----U-G--C F -------------------------------------------------- Cyanophora_paradoxa ----A--C--U--U-C-----------U---G--G--A-A----G-G--G Glaucocystis_nostochinearum ----U--A--U--U-U---A-------U---U--A--G-A---------C Gloeochaete_wittrockiana ----A--C--U--U-C-----------U---G--G--A-A----G-G--G FChlorella'_luteoviridis ----G--G--C--G-U---A-----U-U---U--A--U-U----A-G--A Oxytricha_longa ----G--C--C--U-G---ACUU--U-UA--G--G--A-A----G-G--G Paraurostyla_weissei ----C--U--G--ACU---U-----U-UA--G--G--A-A----G-G--G Cyrtohymena_citrina ----G--C--C--U-G---ACUU--U-UGA-G--G--A-A----G-G--G Gastrostyla_steinii ----U--G--A--C-U---U-----U-UA--G--G--A-A----G-G--G Pleurotricha_lanceolota ----U--G--A--C-U---U-----U-UA--G--G--A-A----G-G--G Onychodromus_quadricornutus ----C--C--U--G-AC--U-----U-UGA-G--G--A-A----G-G--G Stylonychia_lemnae ----C--C--G--A-C---U-----U-UGA-G--G--A-A----G-G--G Stylonychia_mytilus ----A--------C-U---U-----U-UA--G--G--A-A----G-G--G Engelmanniella_mobilis ----G--C--C--U-G---ACUU--U-UA--G--G--A-A----G-G--G Oxytricha_granulifera ----C--C--U--G-AC--UUU---UGU---G--G--A-A----G-G--G Oxytricha_granulifera ----C--C--U--G-AC--UU----U-UA--G--G--A-A----G-G--G Uroleptus_gallina ----G--C--C--U-G---ACUU--U-UGA-G--G--A-A----G-G--G Uroleptus_pisces ----C--C--U--G-AC--UU----U-UA--G--G--A-A----G-G--G Paruroleptus_lepisma ----C--C--U--G-AC--UU----U-UA--G--G--A-A----G-G--G Urostyla_grandis ----C--C--U--G-A---C-----U-UCAAG--G--A-AA---G-G--- Balantidium_coli ----G--U--A--U-A---A-----A-U---A--A--C-UA---C-A--C Euplotes_aediculatus ----U--G--A--U-U---C-----A-UGA-U--A--A-C----U-G--A Tetrahymena_thermophila ----G--U--G--U-CC--U-----G-C---G--A--C-C----G-G--A Bangia_sp._(Northwest_Territories/NWT) ----U--C--A--C-G---A-----A-G---G--G--U------G-G--U Bangia_sp._(Virgin_Islands/VIS7) ----G--C--U--G-U---A-----U-U---U--A--U-U----A-G--A Erythrotrichia_carnea ----A--C--U--C-A---C-----GAA---G--G--G-U----G-G--C Rhodochaete_parvula ----A--C--U--C-A---C-----GAA---G--G--G-U----G-G--C Compsopogon_coeruleus ----C--C--C--G-AC--U-----U-U---G--G--A-A----G-G--G Porphyridium_aerugineum ----AUCC--GA-C-U---C-----U-C---G--C--A-G----G-A--- Rhodella_maculata ----A--C--G--C-CC--GAC---U-C---AC-G--A-A----G-G--G Aulacoseira_ambigua -------C--G--A-C---U-----U-C---G--G--G-A----G-G--A Aulacoseira_baicalensis ----A--G--A--U-CC--GAC---U-UC--G--G--G-A----G-G--A Stephanopyxis_nipponica ----G--G--CCCG-A---C-----U-UC--G--G--A-A----G-G--G Coscinodiscus_radiatus ----ACUA--U--C-C---------U-U---G--G--A-U----A-G--A Corethron_criophilum ----U--A--G--G-A---A-------G---G--G--U-A------G--U Amphora_cf._capitellata ----C--C--C--U-U---C-----U-G---G--G--G-U----A-G--U Sellaphora_pupula_f._capitata ----C--U--C--C-U---A-----U-G---G--G--G-U----A-G--U Thalassiosira_antarctica A---C--C--C--U-U---C-----U-G---G--G--G-U----A-G--U Encyonema_triangulatum ----UA-C--C--C-U---U-------C---U--G--G-G---------G Achnanthes_bongranii ----A--C--C--C-U---UC----U-G---G--G--G-U----A-G--U F -------------------------------------------------- Diatoma_tenue A---C--C--C--U-U---C-----U-G---G--G--G-U----A-G--U Grammatophora_marina ----A--C--C--C-U---CC----U-G---G--G--G-U----A-G--U Thalassionema_sp._p474 ----A--C--C--C-U-----------U---G--G--G-U----G-G--C Rhaphoneis_belgicae ----A--C-----U-U---------U-C---G--G--A-A----G-G--G Undatella_sp._p446 ----A--U--U--C-A---U-------U---U--G--G-G----U-A--- Cymatosira_belgica ----AC-U--G--U-U---C-----G-C---G--G--ACG----G-G--- Odontella_sinensis ----A--C--C--C-AACCG-----U-U---GC-G--A-AA---G-G--G Ditylum_brightwellii ----C--C--CAAC-U---G-----U-UCGCG--G--A-A----G-G--G Lithodesmium_undulatum ----C--CAAC--U-G---C-----U-CGC-G--G--A-A----G-G--G Thalassiosira_eccentrica A---C--C--CAAC-U---G-----U-UCGCG--G--A-A----G-G--G Thalassiosira_pseudonana A---C--C--CGAC-U---G-----U-UCGCG--G--A-A----G-G--G Skeletonema_costatum ----A--C--U--C-UC--G-----G-G---A--A--C------C-G--- Pleurosira_cf._laevis ----C--C--G--A-CC--G-----U-UCGCG--G--A-A----G-G--G Lauderia_borealis ----U--C--G--C-U---------U-U---G--G--A-A----G-G--G F -------------------------------------------------- Bolidomonas_mediterranea ----A--C--C--C-A---ACC---UCU---G--G--ACG----G-G--- Bolidomonas_pacifica ----G--G--U--A-U-----------U---U--A--U-U----A-G--A Labyrinthuloides_minuta ----G--C--C--C-A---U-------U---U--G--G-GC---U-G--U Leptocylindrus_danicus ----A--C--C----U---C-----U-G---G--G--A-A----GAG--- Chaetoceros_sp. ----U--C--GACC-U---U-------U---G--G--A-A----GAG--- Aphanomyces_invadans ----U--G--C--U-U---G-----U-C---G--G--A-C----G-G--G Lagenidium_giganteum ----C--A--A--C-U---GC----U-U---GUCG--G-GC---G-G--G Melosira_varians ----A--C-----U-U---C-----------G--G--A-A------G--A Blastocystis_hominis ----U-----C--C-U---C-------U---GGUG--A-G----GUG--U Perkinsus_marinus ----G--C--C--C-G---AC----U-UC--G--G--A-A----G-G--G Toxoplasma_gondii -------U--C--U-U---CCC---C-U---G--G--A-A----G-G--- Alexandrium_fundyense ----A--CU-U--A-UC--U-----U-U---G--G--G-GAAA-G-G--U Babesia_bigemina ----A--G--C--C-A---------U-G---C--A--U------G-U--- Babesia_canis ----A--U--A--C-AC--G-----U-U---G--G--A-G----G-C--C Babesia_sp._'Oklahoma_dog' ----U--A--A--U-U---GU----A-G---G--G--C-U----A-A--U Babesia_microti ----A--U--U--U-UAC-GC----G-U---G--G--C--------G--- Babesia_microti ----U--U--U--C-G---C-----G-U---G--G--C--------G--- Babesia_microti ----G--U--U--U-UAC-GC----G-U---G--G--C--------G--- Babesia_microti ----G--U--U--U-UC--GC----G-U---G--G--C--------G--- Babesia_microti ----G--U--U--U-UC--GC----G-U---G--G--C--------G--- Babesia_rodhaini -------G--U--U-U---AC----G-C---A--G--C--------G--- Babesia_gibsoni ----C--C--U--U-----C-----U-G---G--A--C------U-G--- Babesia_bovis ----A--A--G--C-----C-----A-U---G--C--A-UG---U-C--U Jakoba_libera ----A--C--U--C-C---C-----G-C---G--U--U-U----G-A--U Reclinomonas_americana ----U--C--GGCC-U---U-----A-C---G--G--U-G----G-A--G Bonamia_ostreae ----G--G--G--C-U---A-----A-U---A--C--G-U------G--A Audouinella_dasyae ----G--U--G--C-C---A-----C-A---AC-G--C------G-A--- Audouinella_hermannii ----A--C--G--C-----------G-G---G--G--C-A------A--C Nemalion_helminthoides ----A-----A--C-A---C-----G-G---C--G--U-A----A-G--C Batrachospermum_gelatinosum ----GG-G--G--U-A---A-----C-C---C--G--U------G-G--U Nemalionopsis_tortuosa ----A--C--G--C-----------G-G---G--G--C-A------A--C Thorea_hispida ----A--C--G--C-----------G-G---G--G--C-A------A--C Thorea_violacea ----A--C--G--C-----------G-G---G--G--C-A------A--C Thorea_violacea ----G--U--A--A-U---UCU---A-G---A--G--C-U----A-A--U Thorea_violacea ----G--U--A--A-U---UCU---A-G---A--G--C-U----A-A--U Nemalionopsis_shawii ----A--C--G--C-----------G-G---G--G--C-A------A--C Balbiania_investiens ----A--C--G--C-----------G-G---G--G--U-A------A--C Batrachospermum_macrosporum ----A--C--G--C-----------G-G---G--G--C-A------A--C Ahnfeltia_plicata ----C--A--A--C-G---------C-G---G--G--G-U---------A Corallina_officinalis -------------C-----A-----A-U---G--C--U-U----G-G--- Rhodogorgon_carriebowensis ----U--G--C--C-AC--A-----A-A---U--G--C-G----G-G--G Bonnemaisonia_hamifera ----U--A--G--U-A---AUUCU-A-G---A--G--C-U----A-A--U Gelidium_vagum ----U--A--G--U-A---AUUCU-A-G---A--G--C-UA---A-U--A Chondrus_crispus ----G--C--G--A-C---AU----U-U---A--U--G-U----C-G--- Halymenia_plana ----U--A--G--U-A---AUUCU-A-G---A--G--C-U----A-AU-A Rhodymenia_leptophylla ----C--G--A--C-U---CA----A-G---UC-G--U--------G--- Plocamiocolax_pulvinata ----A--C--G--G-U---GA----A-A---A--C--C--------G--- Ceramium_rubrum ----G--U--G--C-C---AU----A-C---G--GC-G-A----G-G--U Gracilariopsis_sp. ----C--A--G--C-G---AC----G-CA--A--GUCG-U----G-G--U Bostrychia_moritziana ----G--U--A--G-UAAAGCU---A-G---A--G--C-U----A-A--U Hildenbrandia_rubra ----A--C--G---------U----G-C---C--C--G-AA---A-GC-G Dixonielloa_grisea ----A--A--A--U-A---AG----U-A---G--G--G-U----G-G--U Naegleria_fowleri ----G--C--U--U-U---UU----C-U---A--G--U-----------G Naegleria_gruberi ----G--U--U--U-G---CU----U-U---U--U--C-U----A-G--U Hexamita_sp. -------G--G--C-U---CA----U-U---A--A----A----U-C--- Tritrichomonas_foetus -------U--G--G-----AU----------A--G--C-A------G--C Amblyospora_khaliulini ----A--C--G--C-U----U----G-C---C--U--C-G----A-A--G Edhazardia_aedis -------C--G--C-U----U----G-C---C--U--C-G----A-A--G Amblyospora_connecticus ----A--C--G--C-U----A----G-C---C--U--U-G----A-A--G Intrapredatorus_barri ----A--C--G--C-U----U----G-C---C--U--C-G----A-A--G Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. ----A--C--G--C-U----A----G-C---C--U--C-G----G-G--G Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii ----A--C--G--C-U----U----G-U---U--U--U-A----A-G--G Weiseria_palustris ----A--C--G--C-UU--GU----U-U---U--A--A-G----G-A--- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani ----A--A--G--C-U---AU----U-C---U--U--U-A------A--G Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae ----G--U--G--C-U----A----G-C---G--U--C-A----A-A--G Thelohania_solenopsae ----G--U--G--C-U----A----G-C---G--U--C------A-AG-G Visvesvaria_acridophagus ----G--U--A--C-U----A----G-U---G--U--C-G----A-A--G Bacillidium_sp. ----G--U--G--C-U----U----------G--U--C-U----U-GA-G Pseudonosema_cristatellae ----G--C--GC-U-U---------------G--U--C-U----U-GAAG Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum ----A--C--G--C-U---AG----U-C---U--C--A-U----A-G--- Pleistophora_mirandellae ----A--U--G--C-U---AG----U-C---U--C--A-U----A-G--- Trachipleistophora_hominis ----A--U--G--C-U----A----G-U---C--U--C------A-UA-G Vavraia_culicis ----A--U--G--C-U----A----G-U---C--U--C------A-UA-G F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii ----A--U--G--C-U---AG----U-C---U--C--A-U----A-G--- F -------------------------------------------------- Dictyocoela_gammarellum ----A--C--G--C-U----A----G-U---C--U--C-A----C-A--G Microsporidium_prosopium ----A--U--G--C-U----A----G-U---U--U--C-A----U-A--G Antonospora_scoticae ----G--U--G--C-U----A----G-U---C--U--U-G----G-G--G Paranosema_whitei ----G--C--G--C-U----A----G-U---C--U--U-G----G-G--G #=GC SS_cons ....<..<..<..<.<.........<.<...<..<..<.<....<.<... Cynomorium_coccineum -CUUAA--CA--C--A------U-G--C---AA--------G--U-U--G Cytinus_ruber -CUUAA--CA--C--A------U-G--C---AA--------G--U-U--G Nicotiana_tabacum -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--G Spinacia_oleracea -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--G Zea_mays -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--G Marchantia_polymorpha -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--G Ricinus_communis -CUUAA--CA--C--A------U-A--C---AA--------G--U-C--G F -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--G Prototheca_wickerhamii -CUUAA--CA--C--A------U-G--C---AA--------G--U-U--G Pedinomonas_minor -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--G Nephroselmis_olivacea -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--G Pyramimonas_parkeae -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--G Chlamydomonas_reinhardtii -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--G Acanthamoeba_castellanii -UUUAA--CA--C--A------U-G--C---AA--------A--U-C--G Pilostyles_thurberi ---CCC--UA--CG-A------U-G--C---AC--------A-------- Chondrus_crispus -CUUAA--CA--C--A------U-G--C---AA----------------- Toxoplasma_gondii -CUUAA--CA--C--A------U-G--C---UA--------A--U-U--G Neurospora_crassa -AGGUU--UAAUC--UU-----U-GA-CU--UA--------A--G-C--G Podospora_anserina -CUUGA--CA--C--A------U-G--C---UA--------A--U-C--G Penicillium_chrysogenum -CUUGA--CA--C--A------U-G--C---UA--------A--U-C--G Emericella_nidulans -CUUGA--CA--C--A------U-G--C---UA--------A--U-C--G Saccharomyces_cerevisiae -CAUGA--CG--C--A------U-A--C---GA--------G--U-C--- Williopsis_saturnus_var._mrakii -CAUAA--CA--C--A------U-G--C---AA--------A--U-C--A Pedinomonas_minor -AAUAA--CA--C--A------U-G--C---AA-----------A-C--- Plasmodium_falciparum -CAUUA--CA--C--A------U-G--C---AA--------A--U-U--- Babesia_bovis UUUUAA--CA--C--A------U-G--C---UA--------A--U----U Tetrahymena_pyriformis -CCUAA--CA--C--A------U-G--C---GA--------G--U-U--U Suillus_sinuspaulianus ---UAA---A--U--U------U-U--U---UA--------A--A-U--U Paramecium_tetraurelia -CAUUA--CA--C--A------C-G--C---AA--------G--U-U--U Dictyostelium_discoideum -CUUUA--UA--C--A------U-G--C----A----------------- Physarum_polycephalum -GGUCU---------U------U-G--U---GA--------G--A-U--U Pylaiella_littoralis -CUUGAA-UA--C--A------U-G--C---------------------- Prototheca_wickerhamii -CUUAA--CA--C--A------U-G--C----A----------------- Hydnora_africana -CUUAA--CA--C--A------U-G--C---AA----------------- Codium_fragile -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Caulerpa_sertularioides -CUUAA--CA--C--A------U-G--C---AA--------G--U----U F -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- F -AGUAA--CA--C--G------U-G--A---GA--------A--U-C--- Glaucocystis_nostochinearum -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Gloeochaete_wittrockiana -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Cyanophora_paradoxa -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Cyanophora_paradoxa -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Cryptomonas_sp. -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Palmaria_palmata -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Heterosigma_akashiwo -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Skeletonema_pseudocostatum -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Pylaiella_littoralis -CUUUA--CA--C--A------U-G--C---AA--------G--U-C--- Cyanidium_caldarium -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Emiliania_huxleyi -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Euglena_gracilis -CUUAA--CA--C--A------U-G--C----A----------------- Anabaena_sp. -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- F -------------------------------------------------- Oscillatoria_agardhii -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Pleurocapsa_sp. -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Microcystis_aeruginosa -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos -AGUAA--UA--C--A------U-G--C---GA--------G--U----- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae ----UA---A------------C-G--G-------------A--C-C--C Streptococcus_pyogenes ----CG--UA-----A------C-G--G-------------A--C-C--C Bacillus_anthracis -CCUAA--UA--C--A------U-G--C---AA--------G--U-C--- Bacillus_cereus -CCUAA--UA--C--A------U-G--C---AA--------G--U-C--- Enterococcus_faecalis -CCUAA--UA--C--A------U-G--C---AA--------G--U-C--- Enterococcus_faecium -CCUAA--UA--C--A------U-G--C---AA--------G--U-C--- Listeria_monocytogenes -CCUAA--UA--C--A------U-G--C---AA--------G--U-C--- Bacillus_subtilis -CCUAA--UA--C--A------U-G--C---AA--------G--U-C--- Bacillus_subtilis_A -CCUAA--UA--C--A------U-G--C---AA--------G--U-C--- Bacillus_halodurans -CCUAA--UA--C--A------U-G--C---AA--------G--U-C--- Staphylococcus_aureus -CCUAA--UA--C--A------U-G--C---AA--------G--U-C--- Staphylococcus_aureus_N315 -CCUAA--UA--C--A------U-G--C---AA--------G--U-C--- Lactococcus_lactis_subsp._lactis -CCUAA--UA--C--A------U-G--C---AA--------G--U----U Streptococcus_pyogenes -CCUAA--UA--C--A------U-G--C---AA--------G--U----A Lactobacillus_acidophilus -CCUAA--UA--C--A------U-G--C---AA--------G--U-C--- Mycoplasma_capricolum -CCUAA--UA--C--A------U-G--C---AA--------G--U-C--- Mycoplasma_mycoides -CCUAA--UA--C--A------U-G--C---AA--------G--U-C--- Erysipelothrix_rhusiopathiae_(alpha-P15) -CCUAA--UA--C--A------U-G--C---AA--------G--U-C--- Clostridium_innocuum -CCUAA--UA--C--A------U-G--C---AA--------G--U-C--- Mycoplasma_genitalium -CCUAA--UA--C--A------U-G--C---AA--------G--U-C--- Mycoplasma_pneumoniae -CCUAA--UA--C--A------U-G--C---AA--------G--U-C--- Mycoplasma_pneumoniae -CCUAA--UA--C--A------U-G--C---AA--------G--U-C--- Mycoplasma_gallisepticum -CCUAA--UA--C--A------U-G--C---AA--------G--U-C--- Ureaplasma_urealyticum -CCUAA--UA--C--A------U-G--C---AA--------A--U-C--- Ureaplasma_urealyticum -CCUAA--UA--C--A------U-G--C---AA--------A--U-C--- Mycoplasma_hyopneumoniae -CUUAA--UA--C--A------U-G--C---AU--------G--U----U Fusobacterium_necrophorum -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Fusobacterium_nucleatum_subsp._nucleatum -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptobacillus_moniliformis -CUUAA--CA--C--A------U-G--C---AA----------------- Clostridium_botulinum_type_f -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Clostridium_tetani -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Clostridium_perfringens -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Clostridium_difficile -CCUAA--CA--C--A------U-G--C---AA--------G--U-U--- Eubacterium_brachy -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Epulopiscium_sp. -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Heliobacterium_chlorum -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Glycine_max -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Oenothera_berteroana -CUUAA--CA--C--A------U-G--C---AA--------G--U----C Secale_cereale -CUUAA--CA--C--A------U-G--C---AA--------G--U----C Triticum_aestivum -CUUAA--CA--C--A------U-G--C---AA--------G--U----C Zea_mays -CUUAA--CA--C--A------U-G--C---AA--------G--U----C Marchantia_polymorpha -CUUAA--CA--C--A------U-G--C---AAGUC-----G--A-A--C Nephroselmis_olivacea -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Gluconacetobacter_liquefaciens -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Bradyrhizobium_japonicum -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Rhodoblastus_acidophilus -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Azorhizobium_caulinodans -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Bartonella_quintana -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Mesorhizobium_loti -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Agrobacterium_tumefaciens -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Bartonella_bacilliformis -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Bartonella_henselae -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Brucella_melitensis -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Rhodobium_orientis -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- F -------------------------------------------------- Rickettsia_bellii -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Rickettsia_felis_URRWXCal2 -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--G Rickettsia_prowazekii -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Rickettsia_prowazekii_(str._Madrid_E) -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Rickettsia_rickettsii -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Acinetobacter_calcoaceticus -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Psychrobacter_pacificensis -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Chromohalobacter_marismortui -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- F -------------------------------------------------- Pseudomonas_aeruginosa -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Pseudomonas_aeruginosa -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Pseudomonas_sp. -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Pseudomonas_putida -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Coxiella_burnetii -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Methylococcus_capsulatus -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Legionella_pneumophila -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Legionella_pneumophila -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Allochromatium_vinosum -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Beggiatoa_sp._1401-13 -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Aeromonas_hydrophila -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Shewanella_putrefaciens -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Citrobacter_freundii -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Shigella_dysenteriae -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Klebsiella_pneumoniae -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Plesiomonas_shigelloides -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Yersinia_pestis -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- F -------------------------------------------------- Shigella_dysenteriae -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Escherichia_coli_O157:H7 -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Escherichia_coli_O157:H7_EDL933 -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Escherichia_coli -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Escherichia_coli_K12 -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Escherichia_coli -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Escherichia_coli -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Escherichia_coli -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Salmonella_typhimurium -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Serratia_marcescens -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Edwardsiella_tarda -ACCCA--UA--C-----------G--C----------------C-C--- Proteus_vulgaris -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Vibrio_cholerae -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Vibrio_cholerae -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Vibrio_cholerae -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Vibrio_cholerae -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Vibrio_cholerae -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Vibrio_cholerae -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- F -------------------------------------------------- Haemophilus_influenzae -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Haemophilus_influenzae -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Haemophilus_influenzae -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Haemophilus_influenzae -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Haemophilus_influenzae_(operons_A-F) -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Pasteurella_multocida -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Pasteurella_multocida -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Xanthomonas_albilineans -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Xanthomonas_campestris -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Xylella_fastidiosa -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--G Dichelobacter_nodosus -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Francisella_tularensis -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Bordetella_parapertussis -CUUUA--CA--C--A------U-G--C---AA--------G--U-C--G Bordetella_pertussis -CUUUA--CA--C--A------U-G--C---AA--------G--U-C--G Bordetella_bronchiseptica -CUUUA--CA--C--A------U-G--C---AA--------G--U-C--G unidentified_proteobacterium -CUUUA--CA--C--A------U-G--C---AA--------G--U-C--- Burkholderia_mallei -CCUUA--CA--C--A------U-G--C---AA--------G--U-C--- Burkholderia_sp. -CCUUA--CA--C--A------U-G--C---AA--------G--U-C--- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -CUUUA--CA--C--A------U-G--C---AA--------G--U-C--G Comamonas_testosteroni -CUUUA--CA--C--A------U-G--C---AA--------G--U-C--- Desulfovibrio_desulfuricans -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Myxococcus_xanthus -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Deferribacter_thermophilus -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Borrelia_burgdorferi -UCUUA--AG--C--A------U-G--C---AA--------G--U-C--- Borrelia_burgdorferi -UCUUA--AG--C--A------U-G--C---AA--------G--U-C--- Borrelia_hermsii -UCUUA--AG--C--A------U-G--C---AA--------G--U-C--A Spirochaeta_aurantia -UUUUA--AG--U--A------U-G--C---AA--------G--U-C--- Treponema_pallidum_(rRNA_A) -UUUUA--AG--C--A------U-G--C---AA--------G--U-C--- Leptonema_illini -UCUUA--AA--C--A------U-G--C---AA--------G--U-C--- Leptospira_interrogans -UCUUA--AA--C--A------U-G--C---AA--------G--U-C--- Chlamydia_trachomatis_D/UW-3/CX -GAUGA--GG--C--A------U-G--C---AA--------G--U-C--- Chlamydia_trachomatis_L2/434/BU -GAUGA--GG--C--A------U-G--C---AA--------G--U-C--- Chlamydia_muridarum -GAUGA--GG--C--A------U-G--C---AA--------G--U-C--- Chlamydophila_pneumoniae_AR39 -GAUGA--GG--C--A------U-G--C---AA--------G--U-C--- Chlamydophila_pneumoniae -GAUGA--GG--C--A------U-G--C---AA--------G--U-C--- Chlamydophila_pneumoniae_J138 -GAUGA--GG--C--A------U-G--C---AA--------G--U-C--- F -------------------------------------------------- Chlamydophila_psittaci -GAUGA--GG--C--A------U-G--C---AA--------G--U-C--- Deinococcus_radiodurans -CUUAA--GA--C--A------U-G--C---AA--------G--U-C--- Deinococcus_radiodurans -CUUAA--GA--C--A------U-G--C---AA--------G--U-C--- Bacteroides_fragilis -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Porphyromonas_gingivalis -CUGAA--CA--C--A------U-G--C---AA--------G--U-C--- Prosthecochloris_vibrioformis -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--A Campylobacter_jejuni -CCUAA--UA--C--A------U-G--C---AA--------G--U-C--- Campylobacter_jejuni -CCUAA--UA--C--A------U-G--C---AA--------G--U-C--- Campylobacter_sputorum -AAUAA--UA--U--A------U-AU-C---AAAG------A--U-A--A F -------------------------------------------------- Helicobacter_pylori_J99 -CCUAA--UA--C--A------U-G--C---AA--------G--U-C--- Helicobacter_pylori -CCUAA--UA--C--A------U-G--C---AA--------G--U-C--- Acidobacterium_capsulatum -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Holophaga_foetida -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--G Arthrobacter_globiformis -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Micrococcus_luteus -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Frankia_sp. -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_bottropensis -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_scabiei -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_neyagawaensis -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- F -------------------------------------------------- Streptomyces_sp. -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_acidiscabies -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_griseus -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_ornatus -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_subrutilus -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_bikiniensis -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_galbus -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_hygroscopicus -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_lincolnensis -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_coelicolor -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_tendae -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_ambofaciens -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_eurythermus -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_nodosus -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_sampsonii -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_glaucescens -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_pseudogriseolus -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_caelestis -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_bluensis -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_espinosus -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_mashuensis -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_rimosus -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_limosus -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_odorifer -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_felleus -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_albidoflavus -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_gougerotii -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_rutgersensis -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_intermedius -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- F -------------------------------------------------- Streptomyces_thermoviolaceus -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_megasporus -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Streptomyces_thermolineatus -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Mycobacterium_tuberculosis -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Mycobacterium_tuberculosis -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Mycobacterium_avium -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Mycobacterium_leprae -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Mycobacterium_leprae -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Rhodococcus_erythropolis -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Corynebacterium_diphtheriae -CUUAA--CA--C--A------U-G--C---AA--------G--U-C--- Actinomyces_israelii --------UA-----A------U-G--C---AA--------G--U-C--- Brachyspira_hyodysenteriae -UCUUA--AG--C--A------U-G--C---AA--------G--U-C--- Geotoga_subterranea -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Petrotoga_miotherma -CGUAA--CA--C--A------U-G--C---AA--------G--U-C--- Brevinema_andersonii -UUUUA--GG--C--A------U-G--C---AA--------G--U-C--- Herpetosiphon_aurantiacus -CCUAA--UG--C--A------U-G--C---AA--------G--U-C--- F -------------------------------------------------- Aquifex_aeolicus -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Aquifex_pyrophilus -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Thermotoga_maritima -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- Thermotoga_maritima -CCUAA--CA--C--A------U-G--C---AA--------G--U-C--- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -CCUAA--GA--C--A------U-G--C---AA--------G--U-C--- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -CCUAA--GA--C--A------U-G--C---AA--------G--U-C--- Thermus_aquaticus -CCUAA--GA--C--A------U-G--C---AA--------G--U-C--- Thermomicrobium_roseum -CCUAA--UG--C--A------U-G--C---AA--------G--U-C--- Pirellula_marina -GAUUA--GG--C--A------U-G--C---AA--------G--U-C--C Pirellula_staleyi -GAUUA--GG--C--A------U-G--C---AA--------G--U-C--- Planctomycetaceae_Schlesner_670 -GAUUA--GG--C--A------U-G--C---AA--------G--U-C--- Gemmata_obscuriglobus -GAUUA--GG--C--A------U-G--C---AA--------G--U-C--G Isosphaera_pallida -GAUUA--GG--C--A------U-G--C---AA--------G--U-C--- Pyrococcus_abyssi GACUAA--GC--C--A------U-G--C---GA--------G--U-C--- Pyrococcus_horikoshii GACUAA--GC--C--A------U-G--C---GA--------G--U-C--- Pyrococcus_furiosus GACUAA--GC--C--A------U-G--C---GA--------G--U-C--- Thermococcus_celer GACUAA--GC--C--A------U-G--C---GA--------G--U-C--- Archaeoglobus_fulgidus -ACUAA--GC--C--A------U-G--C---GA--------G--U-C--- Nanoarchaeum_equitans GGCUAA--CC--C--A------U-G--G---AA--------G--G-C--- Aeropyrum_pernix_(str._K1) -GCUAA--GC--C--A------U-G--G---GA--------G--U-C--- Pyrodictium_occultum -ACUAA--GC--C--A------U-G--G---GA--------G--U-C--- Thermoproteus_tenax -GCUAA--GC--C--A------U-G--C---GA--------G--U-C--- Sulfolobus_acidocaldarius -GAUAA--GC--C--A------U-G--G---GA--------G--U-C--- Sulfolobus_solfataricus -GAUAA--GC--C--A------U-G--G---GA--------G--U-C--- Bacteroides_fragilis -GCUAA--GC--C--A------U-G--G---GA--------G--U-C--- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum -AUUAA--GC--C--A------U-G--C---AA--------G--U----C Methanococcus_vannielii -ACUAA--GC--C--A------U-G--C---GA--------G--U----- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -AUUUA--GC--C--A------U-G--C---UA--------G--U-U--- Natronorubrum_bangense -AUUUA--GC--C--A------U-G--C---UA--------G--U----- Natronobacterium_innermongoliae -AUUUA--GC--C--A------U-G--C---UA--------G--U-U--- Haloferax_volcanii -AUUUA--GC--C--A------U-G--C---UA--------G--U----- Methanospirillum_hungatei GACUAA--GC--C--A------U-G--C---GA--------G--U-C--- Picrophilus_torridus_DSM_9790 -ACUAA--GC--C--A------U-G--C---GA--------G--U-C--- Thermoplasma_acidophilum -ACUAA--GC--C--A------U-G--C---AA--------G--U-C--- Giardia_ardeae -CACAA--GC--C--A------U-G--C---AC--------G--C-C--G Giardia_intestinalis -ACGAA--GC--C--A------U-G--C---AU--------G--C-C--C Giardia_muris ACAAAA--GC--C--A------U-G--C---AA----------------- Amblyospora_bracteata -AUUAA--GC--C--A------U-G--C----A-----------U----- Glomus_sp._W3349 ---AAA---C--C---------G-A--C----------------U-A--- Scutellospora_cerradensis -AUUUA---U--U--A------G-A--U---AAA-------A--A-C--C Glomus_intraradices -AUUUA--UU--AG-A------U-A--A---AAA-------A--C-C--A Smittium_culisetae -CCUCU--UA--C--U------UGG--U---GA--------G--U-C--A Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus -GUGUA--UU--U--AUUA---G-A--U---AAA-------A--A-A--C Tilletia_caries -GUGUA--UU--U---------A-U--U---AGA-------U--A-A--A Mucor_circinelloides_f._lusitanicus --GGUG--CA--C--U------U-A--U---UA--------G--A-U--A Mucor_racemosus --GGUG--CA--C--U------U-A--U---UA--------G--A-U--A Rhizopus_oryzae -GUGCA--CU--U--AU-----U-A--G----A-----------U-A--A Mytilus_edulis -AUCAA--AA--C--C------A-G--U---CGG-------G--U-CCGC Placopecten_magellanicus -CCAAAA-CC--A--A------UCG--G---UC--------G--C-A--- Echinococcus_granulosus -UGCCC--GU--U--AGA----U-GGAU---AACUGUA---A--U-A--A Drosophila_melanogaster -CUAGA--UAA-C--A------U-G--C---AG--------A--U-C--- Crossodonthina_koreana -AUCAAAGCC--A--AU-----C-G--A---AC--------U--C-U--C Androctonus_australis -ACCAAGACC--A--A------UCG--G----A--------C--U-U--A Okanagana_utahensis -CACGG--UC--C--A------A-G--U---ACC-------G----G--C Artemia_salina -AUCAAGACC--A--AU-----C-G--G----G--------G--C-U--U Mus_musculus -CCCGG--CU--CC-GGC----C-G--G---GG--------G--U-C--G Rattus_norvegicus --CCCC--UC--C--C------G-G--C---UCCG------G--C-C--G Homo_sapiens -CCCUC--UC--C---------G-G--C---CCCG------G--C-C--G Oryctolagus_cuniculus -UCAGC--CU--C--CC-----C-G--C---CG--------G--C-C--G Xenopus_borealis -AUCAAA-AC--C---------A-A--CC--CG--------G--G-G--C Xenopus_laevis -CCAAA--AC--C---------A-A--UC--CG--------G--G-G--C Acanthamoeba_castellanii -CUUUU--GU--C--UUUUUU-U-A--CC--UA--------C--U-U--G Balamuthia_mandrillaris --GAAU--CG--C--AC-----C-A--U----G--------G--U-C--- Plasmodium_falciparum -GAUAAG-UA--U--U------U-G--U---UA--------G--G-C--C Plasmodium_falciparum -UAUAU--UG--A--AAC----U-G--C---GAA-------C--G-GC-U Plasmodium_vivax -AAAGU--UA--UU-AACU---U-A--AGG-AA--------U--U-A--- Plasmodium_vivax ----UA--UG--C--AGAAAC-U-G--C---GAA-------C--G-GC-U Plasmodium_vivax --GAAG--GA--C--C------U-G--C-------------G--U-C--C Entamoeba_histolytica --AAAC--UG--C--GGAC---G-G--CU--CA--------U--U-A--- Ichthyophonus_hoferi -UUGUA--UU--U--AU-----U-A--G---AU--------A--C-A--G Dermocystidium_sp. -AUAAAA-AA--CC-AA-----U-G------CG--------G--G-C--U Sphaerothecum_destruens -AUUUA---U--U--A------G-A--U---AAA-------A--A-AC-C Acanthocoepsis_unguiculata -CUGUA--UU--U-----------A--U---UAG-------A--U-A--A Diaphanoeca_grandis -UUGUA--UU--U---------A-U--U---AG--------A--U-A--A Allomyces_macrogynus -ACAAA--AC--C---------A-A--C-------------C--C-GG-G Blastocladiella_emersonii -ACAAA--AC--C---------A-G--C----C--------C--C-GG-G Candida_albicans -UGAAA------C---------U-G--CG--AA--------U--G-G--C Saccharomyces_cerevisiae -AUGUA--UU--U---------A-U--U---AGA-------U--A-A--A Neurospora_crassa -GUGUA--UU--U---------A-U--UA--GAU-------U--A-A--A Podospora_anserina -AUGUG--UU--U---------A-U--UA--GAU-------U--A-A--A Coccidioides_immitis -GUGUA--UU--U--AUUA---G-A--U---AA-----------A-A--- Leishmania_major -CAAAA--AU--C--U------U-G--C----G--------G--U-U--- Trypanosoma_cruzi -AAAAA---U--C--U------U-G--C-------------G--G-U--C Trypanosoma_brucei -AUUAG--GG--U--U------C-G--A-------------U--U-C--- Pneumocystis_carinii -AUGUA--UU--U--AUUA---G-A--U---AAA-------A--A-A--C Cryptococcus_neoformans_var._neoformans -GUGUA--UU--U---------A-U--U---AGA-------U--A-A--A fungal_contaminant_of_QPX_isolate -GUGUA--UU--U--AUU----A-G------AU--------A--A-A--A Ustilago_maydis -GUGUA--UU--U---------A-U--U---AGA-------U--A-A--A Mnemiopsis_leidyi -AGGGA--UG--U--AUU----U-A--U---UAG-------A--U-U--A Tripedalia_cystophora -CUAAAA-GC--C---------A-A--U---ACC-------G--G-U--U Microciona_prolifera -AGGUA--UU--U--AUUA---G-A--UCC-AAA-------A--C-C--G Psorospermium_haeckeli -CCGUA--UU--U--AUUA---G-A--U---AC--------A--A-AG-C Euglypha_rotunda -ACAAA--AC--C--A--------A--U---AC--------C--A-C--C Paulinella_chromatophora -AAAAA--AC--C---------A-A--C---GC--------G--U-C--C Antirrhinum_majus -UAAAAG-GU--CG-A------C-A------CG--------G--G-C--U Sesamum_indicum -AUUUA--UU--AG-A------U-A--A---AA--------GGUC-G--A Digitalis_grandiflora -AUUUA--UU--AG-A------U-A--A---AA--------G--G-U--C Plantago_lanceolata -UAAAAG-GU--CG-A------C-A------CG--------G--G-C--U Nicotiana_tabacum -AUUUA--UU--AG-A------U-A--A---AAG-------G--U-C--G Arabidopsis_thaliana -ACGCA--UU--U--AUUA---G-A--U---AAAAG-----G--U-C--G Sinapis_alba -AUUUA--UU--AG-A------U-A--A---AAG-------G--U-C--G Solanum_tuberosum -UAAAAG-GU--C---------G-A--C---GCG-------G--G-C--U Fragaria_x_ananassa -AUUUA--UU--AG-A------U-A--A---AAG-------G--U-C--A Glycine_max -AUUUA--UU--AG-A------U-A--A---AAG-------G--U-CA-A Oryza_sativa -AUUUA--UU--AG-A------U-A--A---AA--------G--G-C--U Zea_mays -AUUUA--UU--AG-A------U-A--A---AA--------G--G-C--U F -------------------------------------------------- Genicularia_spirotaenia -AUUUA--UU--AG-A------U-A--A---AA--------G--G-C--C F -------------------------------------------------- Cyanophora_paradoxa -AUGUA--UU--U--AUUA---G-A--U---AA--------A--A-AACC Glaucocystis_nostochinearum -AAAAA--AC--C---------A-A--C---ACG-------G--U-G--G Gloeochaete_wittrockiana -UUGUA--UU--U---------A-U--UA--GA--------G--C-A--A FChlorella'_luteoviridis -UAAAAGACC--G--AC-----C-G--G-------------G--C-U--U Oxytricha_longa -CUGUA--UU--U--AUUA---G-A--U---AAC-------A--A-AU-C Paraurostyla_weissei -CUGUA--UU--U--AUUA---G-A--U---AAC-------A--A-AU-C Cyrtohymena_citrina -CUGUA--UU--U--AUUA---G-A--U---AAC-------A--A-AU-C Gastrostyla_steinii -CUGUA--UU--U--AUUA---G-A--U---AAC-------A--A-AU-C Pleurotricha_lanceolota -CUGUA--UU--U--AUUA---G-A--U---AAC-------A--A-AU-C Onychodromus_quadricornutus -CUGUA--UU--U--AUUA---G-A--U---AAC-------A--A-AU-C Stylonychia_lemnae -CUGUA--UU--U--AUUA---G-A--U---AAC-------A--A-AU-C Stylonychia_mytilus -CUGUA--UU--U--AUUA---G-A--U---AAC-------A--A-AC-C Engelmanniella_mobilis -CUGUA--UU--U--AUUA---G-A--U---AAC-------A--A-AC-C Oxytricha_granulifera -CUGUA--UU--U--AUUA---G-A--U---AAC-------A--A-AC-C Oxytricha_granulifera -CUGUA--UU--U--AUUA---G-A--U---AAC-------A--A-AC-C Uroleptus_gallina -CUGUA--UU--U--AUUA---G-A--U---AAC-------A--A-AC-C Uroleptus_pisces -CUGUA--UU--U--AUUA---G-A--U---AAC-------A--A-AC-C Paruroleptus_lepisma -CUGUA--UU--U--AUUA---G-A--U---AAC-------A--A-AC-C Urostyla_grandis -CUGUA--UU--U--AUUA---G-A--U---AAC-------A--A-AC-C Balantidium_coli -AGUAA--AA--C---------U-G--C---GAA----------U----G Euplotes_aediculatus -UCGAAUUGC--U---------G-G--A---ACU-------C--U-A--G Tetrahymena_thermophila -ACGUA--UU--U--AU-----U-A--G---AUA-------U--U-A--- Bangia_sp._(Northwest_Territories/NWT) -AUUUA---U--UGGA------U-A--A---AAA-------A--C-C--A Bangia_sp._(Virgin_Islands/VIS7) -UACAA--AC--C---------A-A--U---GCG-------G--U-G--C Erythrotrichia_carnea -AUUUA------C---------U-G--G---ACU-------C--A-A--- Rhodochaete_parvula -AUUUA--CU--GG-AC-----U-A--A---AAA-------C--C-C--U Compsopogon_coeruleus -UGGUA--UU--U--AUUAG--A-A--UC--AAA-------A--C-C--C Porphyridium_aerugineum -UGGUA--UU--U--AU-----U-A--G----CC-------G--C-AA-C Rhodella_maculata -UGGUA--UU--U--AU-----U-A--GUUUUAA-------A--C-C--A Aulacoseira_ambigua -UUGUA--UU--U--AUUA---G-G--U---UACA------A--A-AC-C Aulacoseira_baicalensis -UCGUA--UU--U--AUUA---G-G--U---UACA------A--A-A--C Stephanopyxis_nipponica -UUGUA--UU--U--AU-----U-A--G----AU-------U--A-C--A Coscinodiscus_radiatus -AGAGA--UG--C--AUU----U-A--U---CAGA------A--C-U--A Corethron_criophilum -AUUUAU-UA--G--AU-----U-G--A---AAC-------C--A-A--C Amphora_cf._capitellata -AUUUA---U--U---A-----G-A--UG--GAA-------A--C-C--A Sellaphora_pupula_f._capitata -AUUUA---U--U--AG-------A--U---GGA-------A--A-C--C Thalassiosira_antarctica -AUUUA---U--U---A-----G-A--U---UGA-------A--A-C--C Encyonema_triangulatum -UAGUA--UU--U--AUUA---G-A--U---UGA-------A--A-C--C Achnanthes_bongranii -AUUUA---U--U---A-----G-A--U-----A-------G--A-AACC F -------------------------------------------------- Diatoma_tenue -AUUUA---U--U---A-----G-A--U----UG-------A--A-AC-C Grammatophora_marina -AUUUA---U--U---A-----G-A--U----AG-------A--A-A--- Thalassionema_sp._p474 -AAUUA--UU--A--GA-----A-A--U---AAA---------------C Rhaphoneis_belgicae -UAGUA--UU--U--AUUA---G-A--U---UGA-------G--A-C--C Undatella_sp._p446 ---GUA--UU--U--AU-----U-A--G---AUUG------A--A-AC-C Cymatosira_belgica -UAGUA--UU--U--AUUA---G-A--UA--GAAAC-----C--A-A--C Odontella_sinensis -UUGUA--UU--U--AUUA---G-A--U----AG-------A--A-A--C Ditylum_brightwellii -UAGUA--UU--U--AU-----U-A--G----AU-------A--G-A--A Lithodesmium_undulatum -UAGUA--UU--U--AU-----U-A--G----AU-------A--G-A--A Thalassiosira_eccentrica -UAGUA--UU--U--AUUA---G-G--U----AU-------A--G-A--C Thalassiosira_pseudonana -UAGUA--UU--U--AUUA---G-G--U---AUA-------GA-C-C--A Skeletonema_costatum -CCGUG--UU--U--AUU----A-G--U---AUUA------A--A-C--C Pleurosira_cf._laevis -UAGCU--UU--U--AUUA---G-A--U---AGA-------A--G-C--C Lauderia_borealis -UUGUA--UU--U---------A-U--U----AG-------G--U-A--A F -------------------------------------------------- Bolidomonas_mediterranea -UGGUA--UU--U--AUUA---G-A--UUG-AAA-------C--C-A--A Bolidomonas_pacifica -UUGAA--AC--C---------A-A--U----AA-------G--C-U--- Labyrinthuloides_minuta -AUUUA---U--U---A-----G-A--U-----A-------G--A-A--- Leptocylindrus_danicus -CAGUA--UU--U--AUUA---G-A--U---UGA-------A--A-C--- Chaetoceros_sp. -UGGUA--UU--U-----------A--U---UAG----------A-U--U Aphanomyces_invadans -UAGCA--UU--U--AUUA---G-A--U---UGA-------A--A-C--C Lagenidium_giganteum -UAGCA--UU--U--AUUA---G-A--U----------------U-G--A Melosira_varians -UUGUA---U--U--UAU----U-A--G-------------G--UAU--C Blastocystis_hominis -GUUUA---U--U--AGAA---U-G--A---AAACC-----A--U-A--U Perkinsus_marinus -CUGCG---U--U--UAU----U-A--G----AU-------A--C-A--G Toxoplasma_gondii -CAGUG--UU--U--AUUA---G-A--U---ACA-------G--A-A--C Alexandrium_fundyense -UGUGG--UC--G--UUA----G-U--U---ACA-------G--A-A--C Babesia_bigemina --CUAA---G--U--ACA----A-G--C---UUU----------U----U Babesia_canis -UUUUGG-CC--GC-GUU----U-A--U---UAG-------U--U-G--- Babesia_sp._'Oklahoma_dog' -ACAAG--UU--C--GAGGC--C-U--U---UUUG------G--C-GG-C Babesia_microti -UUUAU--UA--G--ACU------U--U---AAC-------C--A-A--C Babesia_microti -UUUAU--UA--G--ACU------U--U---AAC-------C--A-A--C Babesia_microti -UUUAU--UA--G--ACU------U--U---AAC-------C--A-G--C Babesia_microti -UUUAU--UA--G--ACU------U--U---AAC-------C--A-A--C Babesia_microti -UUUAU--UA--G--ACU------U--U---AAC-------C--A-A--C Babesia_rodhaini --------UU--U--AUU----A-G------ACU----------A-A--- Babesia_gibsoni ----CG--UU--U--AUU----A-G--A---CUC-------G--A-A--- Babesia_bovis -AAGUA---C--C--AGCU---U-G--U---UAC-------G--G-U--- Jakoba_libera -GGGAGG-CG--U----U----U-A--U---UAG-------A--U-U--C Reclinomonas_americana -AGGCA--UU--U--AUUA---G-A--U---ACU-------A--C-C--A Bonamia_ostreae -CAAACC-CU--GC-CUC----G-G--C-----G-------G--G-A--G Audouinella_dasyae -GGUAA--CU--C--GUGG---U-A--C---CAA----------U-C--- Audouinella_hermannii -CCGUGG-UA--C--CAA----U----CA--GAU-------A--U-C--- Nemalion_helminthoides -CGUGG--UA--C--AAA----U----CA--GAU-------A--U-C--A Batrachospermum_gelatinosum -ACCAA---U--C----A------G------AUA----------U-C--- Nemalionopsis_tortuosa -CCGUGG-UA--CC-AAU----UAG------AUA----------U-C--- Thorea_hispida -CCGUGG-UA--CC-AAU----UAG--A---UAU----------C-A--A Thorea_violacea -CCGUGG-UA--CC-AAU----UAG--A---UAU----------C-A--A Thorea_violacea -ACGUG--CC--A--ACA----C-G--C---GGG-------G--C-A--A Thorea_violacea -ACGUG--CC--A--ACA----C-G--C---GGG-------G--C-A--A Nemalionopsis_shawii -CCGUGG-UA--CC-AAU----UAG------AUA----------U-C--- Balbiania_investiens -CCGUGG-UA--C--AAA----U----CA--GAU-------A--U-C--- Batrachospermum_macrosporum -CCGUGG-UA--C--GAA----U----CA--GAU-------A--U-C--- Ahnfeltia_plicata -ACCCG--U-------GG----U-A--C----AA-------G--U----- Corallina_officinalis -GUUUA--CU--C--AGGCAG-U-G--C----CG-------U--U-U--A Rhodogorgon_carriebowensis -UUUCGG-CU--CC-GUGG---U-G--C-----C-------A--A-U--U Bonnemaisonia_hamifera -ACGUG--CC--G--GAA----C-G--CC--GUG-------G--U-A--C Gelidium_vagum -CGUGC--CA--C--AAG------G--C---AACUUUUGUCG--U-G--- Chondrus_crispus -UGGUA---U--A--AAU----U-G--G---AGA----------U-A--C Halymenia_plana -CGUGC--CC--U--AAGACGAC-G--C---AAGUC-----G--U-G--- Rhodymenia_leptophylla ---GUA---U--A--AAU----U-G--G---AGA----------U-A--C Plocamiocolax_pulvinata -UGGUA---U--A--AAU----U-G--G---AGA----------U-A--C Ceramium_rubrum -UUUAC--CU--C----G----U-G--G---UAC-------U--A-AU-U Gracilariopsis_sp. -ACAAA---U--U--AGA----U-A--C---ACA-------A--G-C--- Bostrychia_moritziana -ACGUG--CUA-C--AAAA---U-G--A---GGC-------G--A-G--- Hildenbrandia_rubra -AGUCU--CU--C--GCGG---U-A--C---AAA-------U--U-G--- Dixonielloa_grisea -AUUUG--UU--UG-AUGU---A-A--A---CCG-------A--U-G--- Naegleria_fowleri -GCCAG---G--C--AGAGG--U-G--U-----U----------U-C--- Naegleria_gruberi -GGCCA--GG--C--AGAG-----G------AGU-------U--U-C--- Hexamita_sp. -----A--GU--U--GAAA---U-G--U---CUC-------G--U----- Tritrichomonas_foetus -AGUAA--UU--C---UGG---U-G--C---UAA----------U-A--C Amblyospora_khaliulini -AUUAA--GC--C-----A---U-G--C---AAG----------U----- Edhazardia_aedis -AUUAA--GC--C-----A---U-G--C---AAG---------------- Amblyospora_connecticus -AUUAA--GC--C-----A---U-G--C---AAG---------------- Intrapredatorus_barri -AUUAA--GC--C-----A---U-G--C---AAG---------------- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. -AUUAA--GC--C-----A---U-G--C---AAG---------------- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii -AUUUA--GC--C-----A---U-G--C----AU-------G--U-C--- Weiseria_palustris --UUUA--GC--C-----A---U-G--C----AU-------G--U-C--- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani -AUUAA--GC--C-----A---U-G--C----AU-------G--U----G Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae -AUUUA--GC--C-----A---U-G--C---AUG------------C--- Thelohania_solenopsae -AUUUA--GC--C-----A---U-G--C---AUG------------C--U Visvesvaria_acridophagus -AUUUA--GC--C-----A---U-G--C---AUG------------C--- Bacillidium_sp. -AUUUA--GC--C-----A---U-G--C---AAG----------U-U--- Pseudonosema_cristatellae -AUUUA--GC--C-----A---U-G--C---AAG------------C--- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum -GUUAA--GC--C-----A---U-G--C---AUG----------U----G Pleistophora_mirandellae -GUUAA--GC--C-----A---U-G--C---AUG----------U----- Trachipleistophora_hominis -GUUAA--GC--C-----A---U-G--C---AUG----------U----G Vavraia_culicis -GUUAA--GC--C-----A---U-G--C----AU-------G--U-G--C F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii -AUUUA--GC--C-----A---U-G--C---AUG----------U----- F -------------------------------------------------- Dictyocoela_gammarellum -AUUUA--GC--C-----A---U-G--C---AUG----------U----- Microsporidium_prosopium -ACUAA--GC--C-----A---U-G--C----AU---------------- Antonospora_scoticae -ACUUA--GC--C-----A---U-G--C----AA-------G--C-U--- Paranosema_whitei -ACUUA--GC--C-----A---U-G--C---AAG------------C--- #=GC SS_cons ........<<..<.........<.<..<.............<..<.<... Cynomorium_coccineum U------AC--------------U-G--U-AU--------------A--- Cytinus_ruber A------AC---G----------U-A--A-AA------------------ Nicotiana_tabacum G------AC---G----------G-G--A-AG------------------ Spinacia_oleracea G------AC---G----------G-G--A-AG------------------ Zea_mays A------AC---G----------G-G--A-AG------------------ Marchantia_polymorpha U------AC---G----------G-G--A-AG-GAUC---------C--- Ricinus_communis G------AC---G----------G-G--A-AG------------------ F U------AC---GCAU-------G-C--A-AU-UUGG---------C--- Prototheca_wickerhamii U------AC---GAAG-------G-U--A-UU-UAUC---------U--U Pedinomonas_minor A------AC---UAGC-------U-C--U-AG----C------------- Nephroselmis_olivacea A------ACG--GUGCUU-----A-U--G-GC-AAAGAUUC-----U--U Pyramimonas_parkeae A------AC---GGUG-------U-U--U-UU-UUUC------------- Chlamydomonas_reinhardtii A------AC---GAGC------------A-A------------------- Acanthamoeba_castellanii A------AC---GAAAA------G-U--A-A------------------- Pilostyles_thurberi C------A----UGCAA------G-U--U----UUAC------------U Chondrus_crispus -------GC----UAAA------A-U--U-UU-UUAU------------- Toxoplasma_gondii A------A-----------------U----------G------------G Neurospora_crassa G------GU---GUUUU------A-G--G-GG-AACUUG-------U--G Podospora_anserina AACGUUUAA---UUAAAUUU---U-A--C-AG-UUGCAGUAA----AG-U Penicillium_chrysogenum A------AC---GACUAAU----U-A--G-UU-UAAUUAUU-----A--U Emericella_nidulans A------AC---GACUAAU---------U-A------------------G Saccharomyces_cerevisiae -------A----UACGUUU----A-U--U-A------------------- Williopsis_saturnus_var._mrakii A------A----CGAUUAU----U-U--A-AU-UGAUAUAU-----A--A Pedinomonas_minor -------AC-------------------A-A------------------- Plasmodium_falciparum -------A---------------A-U------------------------ Babesia_bovis A-----------AAUUUAA----A-A--U-A----UUAAAA--------U Tetrahymena_pyriformis UAU----AU----AUAUUA----G-A--U-AA-CAAUUAAA-----U--C Suillus_sinuspaulianus U------AU---UACUAGU----A-U--U-UUUAAAUUAAUUU---G--C Paramecium_tetraurelia UA-----UU---UUACACA----A-G--A-AC-CUUCUUCUU----UGCU Dictyostelium_discoideum -------A----------G------U--U---------GAAC-------- Physarum_polycephalum AG-----GU---------U----G-U--U-GG-UAAGAUAAA-------A Pylaiella_littoralis -G-----A-----------------------------------------G Prototheca_wickerhamii -------A---------GU----U-G--U-A---------CG-------U Hydnora_africana -------GU----UGAACG------------------AGAAA-------- Codium_fragile GA-----AC---GAAUAUU---------A-AG-UUUUCUUAA-------A Caulerpa_sertularioides GA-----AC---GUAUUGG------C--A-G----------C-------- F -G------U-------ACG----G-G--U-----------AA-------- F -U-----AC---CUUUUAU----A-U--A-UU-UAAUUAAAA-------A Glaucocystis_nostochinearum GA-----AC---------G----------------------G-------- Gloeochaete_wittrockiana GA-----AC---------G---------------------AA-------- Cyanophora_paradoxa GA-----AC---------G---------------------AA-------- Cyanophora_paradoxa GA-----AC---------G---------------------AA-------- Cryptomonas_sp. GU-----AC---------G------------------------------- Palmaria_palmata GA-----AC----------------------------------------- Heterosigma_akashiwo GA-----AC----GAGAGG------U--U-----UUUAAAGA-------U Skeletonema_pseudocostatum GU-----AC--------GG------------------------------- Pylaiella_littoralis GU-----AC---------G---------------------AA-------- Cyanidium_caldarium GU-----AC----------------------------------------- Emiliania_huxleyi GA-----AC---------G----------------------A-------- Euglena_gracilis -------A---------------G-U--U-----GAACGAAA-------U Anabaena_sp. GA-----AC---------G------------------------------- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 GA-----AC---------G------------------------------- F -------------------------------------------------- Oscillatoria_agardhii GA-----AC--------GG----------------------A-------- Pleurocapsa_sp. GA-----AC---------G----------------------A-------- Microcystis_aeruginosa GA-----AC--------GG----------------------G-------- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos ------------------G------------------------------- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae AU-----AC---GCCCAUG--------------CGUGAUGUA-------- Streptococcus_pyogenes AU-----AC---GCCCAUG--------------CGUGAUGUA-------- Bacillus_anthracis GA----------GCGAAUG--------------GAUUAAGAG-------C Bacillus_cereus GA----------GCGAAUG--------------GAUUAAGAG-------C Enterococcus_faecalis GA-----AC-----GCUUC------U--U-UC-CUCCCGAGU----G--C Enterococcus_faecium GA-----AC---GCUUCUU----U-U--U-CC---ACCGGAG-------C Listeria_monocytogenes GA-----AC-----GAACG--------------GAGGAAGAG-------C Bacillus_subtilis GA---------------GC----G-G---------ACAGGUG-------G Bacillus_subtilis_A GA-----GC---GGACAGA-----------------UGGGAG-------- Bacillus_halodurans GA-----GC---GGACCAA------------------AGGGA-------G Staphylococcus_aureus GA----------GCGAACG--------------GACGAGAAG-------C Staphylococcus_aureus_N315 GA----------GCGAACG--------------GACGAGAAG-------C Lactococcus_lactis_subsp._lactis GA-----GC---GCUGAAG----------------GUUGGUA-------C Streptococcus_pyogenes GA-----AC---GCUGAGA----------------ACUGGUG-------C Lactobacillus_acidophilus GA-----GC---GAGCUGAA---C-C--A-AC-AGAUUCACU-------U Mycoplasma_capricolum GA-----AC--------GG----------------------G-------- Mycoplasma_mycoides GA-----AC--------GG----------------------A-------- Erysipelothrix_rhusiopathiae_(alpha-P15) GA-----AC-----GAAGU--------------GAAGAGGAG-------C Clostridium_innocuum GA-----AC------GAAG------U-------CUUCAGGAA----G--C Mycoplasma_genitalium GA-------------UCGG----------------------A-------- Mycoplasma_pneumoniae GA--------------UCG---------------------AA-------- Mycoplasma_pneumoniae GA--------------UCG---------------------AA-------- Mycoplasma_gallisepticum GA-------------UCGG----------------------A-------- Ureaplasma_urealyticum GA-----AC---------G----------------------A-------- Ureaplasma_urealyticum GA-----AC---------G----------------------A-------- Mycoplasma_hyopneumoniae GA-----AC-----GGAAU----------------AUUUUAG-------- Fusobacterium_necrophorum -G-----AC----------------------------------------- Fusobacterium_nucleatum_subsp._nucleatum -U-----AC-------UUG--------------AAUUUGGGU-------U Streptobacillus_moniliformis -------A---------UC----U-A--U-GU--AUGAAAUG-------U Clostridium_botulinum_type_f GA-----GC---GAUGAAG--------------------CUU-------C Clostridium_tetani GA-----GC---GAUGAAG--------------------CUU-------C Clostridium_perfringens GA-----GC---GAUGAAG--------------------UUU-------C Clostridium_difficile GA----------------G------------------------------- Eubacterium_brachy GA-----GC---GAGAAGU----U-U--U-GA-AAAGAUUCU-------U Epulopiscium_sp. GA-----AC--------GG----------------------A-------- Heliobacterium_chlorum GA-----AC---GGAGAGC------------------GGAAG-------U Glycine_max GA-----AC-------GUU----G-U--U-UUCGGGGAGCUG----G--G Oenothera_berteroana GA-----ACGUUGUUUUCG----G-G--G-AG-CUGGGCAGA-------A Secale_cereale GA-----ACGUUGUUUUCG----G-G--G-AG-CUGGGCAGA-------A Triticum_aestivum GA-----ACGUUGUUUUCG----G-G--G-AG-CUGGGCAGA-------A Zea_mays GA-----ACGUUGUUUUCG----G-G--G-AG-CUGGGCAGA-------A Marchantia_polymorpha GU-----UG---UUUUCGU----C-C--U-UA-CGUGUUGAA----G--G Nephroselmis_olivacea GA-----AC---------G------------------------------- Gluconacetobacter_liquefaciens GC-----AC---------G------------------------------- Bradyrhizobium_japonicum GA-----GC--------GG----------------------G-------- Rhodoblastus_acidophilus GA-----AC--------GG----------------------G-------- Azorhizobium_caulinodans GA----------------G------------------------------- Bartonella_quintana GA-----GC---------G------------------------------- Mesorhizobium_loti GA----------------G------------------------------- Agrobacterium_tumefaciens GA---------------------------------------A-------- Bartonella_bacilliformis GA-----GC---------G------------------------------- Bartonella_henselae GA-----GC---------G------------------------------- Brucella_melitensis GA----------------G------------------------------- Rhodobium_orientis GA---------------------------------------A-------- F -------------------------------------------------- Rickettsia_bellii GA-----AC-----GGACU---------------AAUUGGGG-------- Rickettsia_felis_URRWXCal2 GA-----------CGGACU---------------AAUUGGGG-------- Rickettsia_prowazekii GA-----AC-----GGAUU---------------AACUAGAG-------- Rickettsia_prowazekii_(str._Madrid_E) GA-----AC-----GGAUU---------------AACUAGAG-------- Rickettsia_rickettsii GA-----AC-----GGACU---------------AAUUGGGG-------- Acinetobacter_calcoaceticus GA-----GC---GGGGAAG-------------------GUUG-------- Psychrobacter_pacificensis GA-----GC----GGAACG----------------AUGAUAG-------C Chromohalobacter_marismortui GA-----GC---GGUAACA----------------GGUCCAG-------C F -------------------------------------------------- Pseudomonas_aeruginosa GA----------GCGGAUG----------------AAGGGAG-------- Pseudomonas_aeruginosa GA----------GCGGAUG----------------AAGGGAG-------- Pseudomonas_sp. GA----------GCGGAUG----------------AUGGGAG-------- Pseudomonas_putida GA----------GCGGAUG----------------AGAAGAG-------- Coxiella_burnetii GA-----AC---GGCAGCG--------------CAGGGAGGC-------U Methylococcus_capsulatus GA-----AC---------G----------------GUAACAG-------G Legionella_pneumophila GA-----AC-----GGCAG------C-------AUUGUCUAG-------C Legionella_pneumophila GA-----AC-----GGCAG------C-------AUUGUCUAG-------C Allochromatium_vinosum GA-----AC---GCGAAAG---------------------GG-------- Beggiatoa_sp._1401-13 GA-----AC---------G---------------------GG-------- Aeromonas_hydrophila GA----------GCGGCAG---------C-G--GGAAAGUAG-------C Shewanella_putrefaciens GA-----GC---GGCAGCA--------------CAAGGAGUU-------U Citrobacter_freundii GA-----AC-----GGUAG------C-------ACAGAGGAG-------C Shigella_dysenteriae GA-----AC--------GG------U--A-A--CAGGAAGCA-------- Klebsiella_pneumoniae GA-----GC---GGUAGCA---------------CCUGAGAG-------C Plesiomonas_shigelloides GA-----GC---GGUAACA------C---------AGAGGAG-------C Yersinia_pestis GA-----GC--------GG------C--A-G--CGGGAAGUA-------- F -------------------------------------------------- Shigella_dysenteriae GA-----AC---GGUAACA---------------GAAAGCAG-------C Escherichia_coli_O157:H7 GA-----AC--------GG------U--A-A--CAGGAAGAA-------- Escherichia_coli_O157:H7_EDL933 GA-----AC--------GG------U--A-A--CAGGAAGAA-------- Escherichia_coli GA-----AC--------GG------U--A-A--CAGGAAGAA-------- Escherichia_coli_K12 GA-----AC--------GG------U--A-A--CAGGAAGAA-------- Escherichia_coli GA-----AC--------GG------U--A-A--CAGGAAGAA-------- Escherichia_coli GA-----AC--------GG------U--A-A--CAGGAAGAA-------- Escherichia_coli GA-----AC--------GG------U--A-A--CAGGAAGAA-------- Salmonella_typhimurium GA-----AC---GGUAACA---------------GGAAGCAG-------C Serratia_marcescens GA----------GCGGUAG------C-------ACAGGGGAG-------C Edwardsiella_tarda -A-----------UGCGUG--------------AUGUAAGAA-------- Proteus_vulgaris GA-----GC--------GG------U--A-A--CAGGAGAAA-------- Vibrio_cholerae GA----------GCGGCAG------C-------ACAGAGGAA-------C Vibrio_cholerae GA----------GCGGCAG------C-------ACAGAGGAA-------C Vibrio_cholerae GA----------GCGGCAG------C-------ACAGAGGAA-------C Vibrio_cholerae GA----------GCGGCAG------C-------ACAGAGGAA-------C Vibrio_cholerae GA----------GCGGCAG------C-------ACAGAGGAA-------C Vibrio_cholerae GA----------GCGGCAG------C-------ACAGAGGAA-------C F -------------------------------------------------- Haemophilus_influenzae GA-----AC--------GG------U--A-G--CAGGAGAAA-------- Haemophilus_influenzae GA-----AC--------GG------U--A-G--CAGGAGAAA-------- Haemophilus_influenzae GA-----AC--------GG------U--A-G--CAGGAGGAA-------- Haemophilus_influenzae GA-----AC--------GG------U--A-G--CAGGAGAAA-------- Haemophilus_influenzae_(operons_A-F) GA-----AC--------GG------U--A-G--CAGGAGAAA-------- Pasteurella_multocida GA-----AC--------GG------U--A-G--CAGGAAGAA----A--- Pasteurella_multocida GA-----AC--------GG------U--A-G--CAGGAAGAA----A--- Xanthomonas_albilineans GA-----AC---GGCAGCA--------------CAGUGGUAG-------C Xanthomonas_campestris GA-----AC-----GGCAG-----------CA-CAGUAAGAG-------C Xylella_fastidiosa GA-----------CGGCAG------C-------ACGUUGGUA-------G Dichelobacter_nodosus GA-----AC------GGGG----------------UUAUGUA-------- Francisella_tularensis GA-----AC---------G----------------GUAACAG-------G Bordetella_parapertussis GA--------------CGG--------------CAGCACGGG-------- Bordetella_pertussis GA--------------CGG--------------CAGCACGGG-------- Bordetella_bronchiseptica GA--------------CGG--------------CAGCACGGG-------- unidentified_proteobacterium GA-----AC--------GG--------------CAGCGCGGG-------- Burkholderia_mallei GA-----AC--------GG--------------CAGCACGGG-------- Burkholderia_sp. GA-----AC-----GGCAG---------------CACGGGAG-------- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae GA-----------CGGCAG------C-------ACAGGGAAG-------C Comamonas_testosteroni GA-----AC---------G----------------GUAACAG-------G Desulfovibrio_desulfuricans GA-----AC---GCGAAAG--------------------GGA-------- Myxococcus_xanthus GA----------------G--------------CGCGAAUAG-------- Deferribacter_thermophilus -A------------GGGGG---------------AAAGCUGG-------C Borrelia_burgdorferi AA-----AC---------G--------------------GGA-------- Borrelia_burgdorferi AA-----AC---------G--------------------GGA-------- Borrelia_hermsii GA---------------CG--------------------GAA-------- Spirochaeta_aurantia GA--------------AUG----------------GCAGUGG-------- Treponema_pallidum_(rRNA_A) GA-----AC---GGCAAGG----------------AAGCGAA-------- Leptonema_illini GA----------GCGGCAG------------------------------- Leptospira_interrogans -A---------------AG---------------------CG-------- Chlamydia_trachomatis_D/UW-3/CX GA-----AC--------GG---------------AGCAAUUG-------- Chlamydia_trachomatis_L2/434/BU GA-----AC--------GG---------------AGCAAUUG-------- Chlamydia_muridarum GA-----AC--------GG---------------AACAAUUG-------- Chlamydophila_pneumoniae_AR39 GA-----AC--------GG---------------AAUAAUGA-------- Chlamydophila_pneumoniae GA-----AC--------GG---------------AAUAAUGA-------- Chlamydophila_pneumoniae_J138 GA-----AC--------GG---------------AAUAAUGA-------- F -------------------------------------------------- Chlamydophila_psittaci GA-----AC--------GG---------------AAUAAUGA-------- Deinococcus_radiodurans GA-----AC---------G------------------------------- Deinococcus_radiodurans GA-----AC---------G------------------------------- Bacteroides_fragilis GA-------------GGGG------C--A-U--CAGGAAGAA----A--- Porphyromonas_gingivalis GA-------------GGGG------C--A-GC--AUGAUCUU-------A Prosthecochloris_vibrioformis AA-----G----------G-------------------AAAG-------C Campylobacter_jejuni GA-----AC---GAUGAAG----------------CUUCUAG-------C Campylobacter_jejuni GA-----AC---GAUGAAG----------------CUUUUAG-------C Campylobacter_sputorum UU-----UA----UAAAUA----A-A--A-AG-UUAUAAAUA-------- F -------------------------------------------------- Helicobacter_pylori_J99 GA-----AC---GAUGAAG----------------CUUCUAG-------C Helicobacter_pylori GA-----AC---GAUGAAG------C----------UUCUAG-------C Acidobacterium_capsulatum GA-----AC-------AAG----------------AAAGGGA-------- Holophaga_foetida GA------------------------------------------------ Arthrobacter_globiformis GA-----AC------GAUG---------------AUCCGGUG-------- Micrococcus_luteus GA-----AC------GAUG---------------AAGCCCAG-------- Frankia_sp. GA-------------GCGG----------------------G-------- Streptomyces_bottropensis GA-----AC---------G------------------AUGAA-------C Streptomyces_scabiei GA-----AC---------G------------------AUGAA-------C Streptomyces_neyagawaensis GA-----AC---------G------------------AUGAA-------G F -------------------------------------------------- Streptomyces_sp. GA-----AC---------G------------------AUGAA-------G Streptomyces_acidiscabies GA-----AC---------G------------------AUGAA-------G Streptomyces_griseus GA-----AC---------G------------------AUGAA-------G Streptomyces_ornatus GA-----AC---------G------------------AUGAA-------G Streptomyces_subrutilus GA-----AC---------G------------------AUGAA-------G Streptomyces_bikiniensis GA-----AC---------G------------------AUGAA-------G Streptomyces_galbus GA-----AC---------G------------------AUGAA-------C Streptomyces_hygroscopicus GA-----AC---------G------------------AUGAA-------C Streptomyces_lincolnensis GA-----AC---------G------------------AUGAA-------C Streptomyces_coelicolor GA-----AC---------G------------------AUGAA-------C Streptomyces_tendae GA-----AC---------G------------------AUGAA-------C Streptomyces_ambofaciens GA-----AC---------G------------------AUGAA-------C Streptomyces_eurythermus GA-----AC---------G---------------AUGAACCU-------- Streptomyces_nodosus GA-----AC---------G------------------AUGAA-------G Streptomyces_sampsonii GA-----AC---------G---------------AUGAACCG-------- Streptomyces_glaucescens GA-----AC---------G------------------AUGAA-------C Streptomyces_pseudogriseolus GA-----AC---------G------------------AUGAA-------C Streptomyces_caelestis GA-----AC---------G------------------AUGAA-------C Streptomyces_bluensis GA-----AC---------G---------------AUGAAGUC-------- Streptomyces_espinosus GA-----AC---------G------------------AUGAA-------C Streptomyces_mashuensis GA-----AC---------G---------------AUGAACCU-------- Streptomyces_rimosus GA-----AC---------G------------------AUGAA-------G Streptomyces_limosus GA-----AC---------G---------------AUGAACCG-------- Streptomyces_odorifer GA-----AC---------G---------------AUGAACCG-------- Streptomyces_felleus GA-----AC---------G---------------AUGAACCG-------- Streptomyces_albidoflavus GA-----AC---------G---------------AUGAACCG-------- Streptomyces_gougerotii GA-----AC---------G------------------AUGAA-------G Streptomyces_rutgersensis GA-----AC---------G------------------AUGAA-------G Streptomyces_intermedius GA-----AC---------G------------------AUGAA-------G F -------------------------------------------------- Streptomyces_thermoviolaceus GA-----AC---------G---------------AUGAAGCC-------- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus GA-----AC---------G---------------AUGAACCU-------- Streptomyces_megasporus GA-----AC---------G--------------CCGGCCUCG-------C Streptomyces_thermolineatus GA-----AC--------GG-------------------UGAA-------G Mycobacterium_tuberculosis GA-----AC---------G----------------GAAAGGU-------C Mycobacterium_tuberculosis GA-----AC---------G----------------GAAAGGU-------C Mycobacterium_avium GA-----AC---------G----------------GAAAGGC-------C Mycobacterium_leprae GA-----AC---GGAAAGG------U--C----UCUAAAAAA-------U Mycobacterium_leprae GA-----AC---GGAAAGG------U--C----UCUAAAAAA-------U F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides GA-------------GCGG-------------------UAAG-------C Rhodococcus_erythropolis GA-------------GCGG--------------------UAA-------G Corynebacterium_diphtheriae GA-----AC----GGAAAG-----------------GCCUAG-------- Actinomyces_israelii GA-----AC---GGGUCUG----------------CCUUGUU-------- Brachyspira_hyodysenteriae GA-------------GCGG--------------GCUUAUUCG-------- Geotoga_subterranea GA-----AC------GGAG--------------AAAGAGGAG-------C Petrotoga_miotherma GA-----AC--------GG---------------GUUAUACA-------U Brevinema_andersonii GA-----AC--------GG------C--A-G--CGGGAUAGA-------- Herpetosiphon_aurantiacus GA-----AC---------G------------------------------- F -------------------------------------------------- Aquifex_aeolicus GU-----GC----GCAGGG--------------UCGGCCCCU-------U Aquifex_pyrophilus GU----------GCGCAGG--------------CUCGCUCCC-------U Thermotoga_maritima GA----------GCGGGGG--------------AAACUCCCU-------- Thermotoga_maritima GA----------GCGGGGG--------------AAACUCCCU-------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus GU-------------GCGG--------------GCCGCGGGG-------- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus GU-------------GCGG--------------GCCGCGGGG-------- Thermus_aquaticus GU-------------GCGG-----------------GCCGUG-------- Thermomicrobium_roseum -------GG-------ACG----------------GGAUGCA-------C Pirellula_marina GC----------------G--------------CGAUAACUG-------- Pirellula_staleyi GU----------------G--------------CGCGAUAUG-------- Planctomycetaceae_Schlesner_670 GA-------------GCGG----------------------A-------- Gemmata_obscuriglobus GG---------------GG----------------------A-------- Isosphaera_pallida GA------------------------------------------------ Pyrococcus_abyssi -A--------------AGG------------------GGGCG-------- Pyrococcus_horikoshii -A--------------AGG------------------GGGCG-------- Pyrococcus_furiosus -A--------------AGG------------------GGGCG-------- Thermococcus_celer -A---------------UG----------------------G-------- Archaeoglobus_fulgidus -A------------AGGGG--------------CUUGUAUCC-------- Nanoarchaeum_equitans GA---------------GG----------------------G-------- Aeropyrum_pernix_(str._K1) GA-----AC---------G------------------------------- Pyrodictium_occultum GU----------------G---------------------CG-------- Thermoproteus_tenax -------GC---------G------------------------------- Sulfolobus_acidocaldarius UU-----AC--------------------------------A-------- Sulfolobus_solfataricus UU-----AC--------------------------------A-------- Bacteroides_fragilis -------GU-------ACG------------------------------- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum GA---------------------------------------A-------- Methanococcus_vannielii -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. ------------------G------------------------------- Natronorubrum_bangense -----------------UG------------------------------- Natronobacterium_innermongoliae ------------------G------------------------------- Haloferax_volcanii -----------------UG------------------------------- Methanospirillum_hungatei GA-------------GAGG------------------------------- Picrophilus_torridus_DSM_9790 -A------------------------------------------------ Thermoplasma_acidophilum -A------------------------------------------------ Giardia_ardeae GC----------GCGGCAC--------------GGCGAAGGG-------- Giardia_intestinalis GC----------UCACCCG----------------GGACGCG-------- Giardia_muris -------GC---------G------------------------------- Amblyospora_bracteata ------------------G------------------------------C Glomus_sp._W3349 -A-----------ACCUUG----G-U--G-A---AUCAUGAU-------A Scutellospora_cerradensis AAU----AA---CCUUCGG----G-U--U-UCACUUGGUGAU----U--C Glomus_intraradices AUAUC--GG---GCAACCG----A-U--U-CC-CUUGGUGAU----U--C Smittium_culisetae UA-----AU---AACUAAG----C-A--U-AU-CGCAUGGCC----U--U Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus CA-----AU---GCCCUUC----G-G--G-GC-UCCUUGGUG-------A Tilletia_caries AA-----CC---AACCCUU----C-G--G-GU-CCCUUGGUG----A--A Mucor_circinelloides_f._lusitanicus AA-----GC-----CAACG----C-U--G-GG-UAAAACCAG----U--U Mucor_racemosus AA-----GC-----CAACG----C-U--G-GG-UAAAACCAG----U--U Rhizopus_oryzae AA-----CC---AACGCGG----G-G--U-A--AAACCUGUU----U--C Mytilus_edulis AA-----GGGC-CCGUCGG----A-U--U-GG-UGAGACUGG-------A Placopecten_magellanicus -A-----GGC--CGUCACU----C-U--G-GU-GAAUCUGGA----U--A Echinococcus_granulosus CUCU---AG---AGCUAAU----A-C--A-UG--CCUCGAUG----C--C Drosophila_melanogaster GU-----AU---GGUCUUG----U-A--CCGA-CGACAGAUC----U--U Crossodonthina_koreana GG-----GU---UCGUUUAA---U-U--G-GU-GACUCUGAA-------U Androctonus_australis GG-----UC---CGCAAACU---G-U--G-GU-GACUCUGGA----U--A Okanagana_utahensis GA-----CG----CAUCUU------U--C-AA-AUGUCUGAC----U--U Artemia_salina CG-----GC---UCGUCUC----U-U--G-GU-GACUCUGAA----U--A Mus_musculus GGC----GC---CGGCGGC----U-U--G-GU-GACUCUAGA----U--A Rattus_norvegicus GG-----GG---UCGGGCGCCGGC-G--G-CU-UUGGUGACU----C--U Homo_sapiens GGG----GG---CGGGCGCCGG-C-G--G-CU-UUGGUGACU----C--U Oryctolagus_cuniculus GG-----GG---GGUGGGGCGG-C-G--G-CU-UUGGUGACU----C--U Xenopus_borealis CC-----CC---GCGCCCC----G-G--C-CGCUUUGGUGAC----U--C Xenopus_laevis CC-----CC---GCGCCCC----G-G--C-CGCUUUGGUGAC----U--C Acanthamoeba_castellanii GAUAA--CC---GUGGUAA----U-U--C-UA-GAGCUAAUA----C--A Balamuthia_mandrillaris -C-----CC---UCGUGGG----A-UC-G-GC-GAUGCUUCA----U--U Plasmodium_falciparum UU-----AUAA-GAAAAAAG---U-U--A-UU-AACUUAAGG----A--A Plasmodium_falciparum CA-----UU---AAAACAG----U-U--A-UA-AUCUACUUGAU--G--U Plasmodium_vivax UA-----AC---AAAGAAGCG--A-C--A-CG-UAAUGGAUC----C--G Plasmodium_vivax CA-----UU---AAAACAG----U-U--A-UA-AUAUACUGGAC--A--U Plasmodium_vivax AUU----UA---UAGUGUGU---A-U--C-AA-UCGAGUUUC----UG-A Entamoeba_histolytica UA-----AC---AGUAAUA----G-U--U-UC-UUUGGUUAG-------U Ichthyophonus_hoferi AAC----CA---CUGCAGG----G-C--A-AC-CUGGUUACUUG--G--U Dermocystidium_sp. CU-----UG---UGGUCCG----G-U--U-CU-UUGGUGAUU----C--A Sphaerothecum_destruens AAUG---CGA--GUUAACC----C-U--C-GGUUUCUUGGUG----A--U Acanthocoepsis_unguiculata AA----------AACCAAU----A-U--U-UG-UGUUGAAUC----A--- Diaphanoeca_grandis AAA----AC---CAACAUU------U--U-UC-UUGGUGAAU----C--A Allomyces_macrogynus CA-----AC---CGGUUUU----U-U--G-GU-GAUUCAUGA-------U Blastocladiella_emersonii CA-----AC---CGGGUUUU---C-U--G-UU-GGUGAUUCA----U--G Candida_albicans UC-----AU---UAAAUCA----G-U--U-A---UCGUUUAU-------U Saccharomyces_cerevisiae AAA----UC---AAUGUCUU---C-G--G-AC-UCUUUGAUG----A--U Neurospora_crassa AA-----CCA--AUGCCCUU---C-G--G-GGCUAACUGGUG----A--U Podospora_anserina AA-----CC---AAUGCCCUC--C-G--G-GGCUCACUGGUG----A--U Coccidioides_immitis AA-----CCA--AUGCCCU----U-C--G-GG-GCUCUUUGGUG--A--U Leishmania_major -U----------CCGCAAA----A-U--U-GG--AUAACUUG----G--C Trypanosoma_cruzi UC-----------CGCAAA----A-U--U-GG--AUAACUUG----G--C Trypanosoma_brucei -C-----GG---AGAGGGA----G-C--C-UGAGAAAUAGCU----A--C Pneumocystis_carinii CA-----AU-----GCCUU----C-G--G-GC-UUUUUGGUG-------A Cryptococcus_neoformans_var._neoformans AAA----CC---AAUGGGUU---U-C--G-GC-CCUCUAUGGUG--A--A fungal_contaminant_of_QPX_isolate AAC----CA---AUGGGUG----C-A--A-GCCCUCUAUGGUG---A--U Ustilago_maydis AA-----CC---AUCCUCC----U-C--G-GA-GUUUGGUGA----U--U Mnemiopsis_leidyi AA-----AA---CCAAUGC----G-U--U-U--AACGACGCU----U--U Tripedalia_cystophora UC-----GC-----GACCG----G-U--U-CU-AUUGGUGAU----U--C Microciona_prolifera GC-----GCG--GGUCCCUC---G-G--G-GC-CCGGUUGCUA---G--G Psorospermium_haeckeli CA-----AU---CGGGGCA----A-C--C-CG-UUAGGUGAU-------- Euglypha_rotunda UC-----GG-----UGGCU----A-U--U-CU-GGUGACUCA-------U Paulinella_chromatophora UCU----GG---GGCGGUU----G-U--U-UG--GUGAUUCA-------U Antirrhinum_majus CU-----GC---CCGUUGC----U-G--C-GA-UGAUUCAUG----A--U Sesamum_indicum CAC----GG---GCUCCGC----C-C--G-UU-GCUGCGAUG----A--U Digitalis_grandiflora GACACGGGC---UCUGCCU----G-U--U-GC-UUCGAUGAU----U--C Plantago_lanceolata CU-----GC---CUGUUGC----U-U--C-GA-UGAUUCAUG----A--U Nicotiana_tabacum AC-----GCG--GGCUCUGC---C-C--G-UU-GCUGCGAUG----A--U Arabidopsis_thaliana AC-----GCG--GGCUCUGC---C-C--G-UU-GCUCUGAUG----A--U Sinapis_alba AC-----GCG--GGCUCUG----UGC--U-GC-UCUGAUGAU----U--C Solanum_tuberosum CU-----GC---CCGUUGC----U-G--C-GA-UGAUUCAUG----A--U Fragaria_x_ananassa AC-----GCG--GGCUCUG----C-U--C-GC-AUUGAUGAU----U--C Glycine_max CACAG--GC---UCUGCCU----G-U--U-GC-UUUGAUGAU----U--C Oryza_sativa GACGCGGGC---UCCGCCC----G-C--U-GA-UCCGAUGAU----U--C Zea_mays GACGCGGGC---UCUGCCC----G-C--C-GA-UCCGAUGAU----U--C F -------------------------------------------------- Genicularia_spirotaenia GACCUG-GGC--UCGCCCA----G-U--U-CU-UCGGUGAUU----C--A F -------------------------------------------------- Cyanophora_paradoxa AA-----CAC--CGGGCAA----C-C--G-GAUCCCUUGGUG----A--U Glaucocystis_nostochinearum GU-----UC---ACGCCCU----C-C--G-AU-CCCUUGGUG----A--U Gloeochaete_wittrockiana AAA----CC---AACUCUG----G-G--C-AACCCGGAUCCUUG--G--U FChlorella'_luteoviridis GC----------CCGAUCC----G-C--G-GU-GAUUCAUGA-------U Oxytricha_longa AAUA---UU---CCUCGUG----U-C--U-AU-UGUGAUGAC----U--- Paraurostyla_weissei AAUA---UU---CCCCGUG----U-C--U-AU-UGUGACGAC----U--- Cyrtohymena_citrina AAUA---UU---CCCCGUG----U-C--U-AU-UGUGAUGAC----U--- Gastrostyla_steinii AAUA---UU---CCUCGUG----U-C--U-AU-UGUGAUGAC----U--- Pleurotricha_lanceolota AAUA---UU---CCUUGUG----U-C--U-AU-UGUGAUGAU----U--- Onychodromus_quadricornutus AAUA---UU---CCUUGUG----U-C--U-AU-UGUGACGAU----U--- Stylonychia_lemnae AAUA---UU---CCUUGUG----U-C--U-AU-UGUGAUGAC----U--- Stylonychia_mytilus AAUA---UU---CCUUGUG----U-C--U-AU-UGUGAUGAC----U--- Engelmanniella_mobilis AAUA---UU---CCUCGUG----U-C--U-AU-UGUGACGAC----U--- Oxytricha_granulifera AAUA---UU---CCCCGUG----U-C--U-AU-UGUGACGAC----U--- Oxytricha_granulifera AAUA---UU---CCUUGUG----U-C--U-AU-UGUGAUGAC----U--- Uroleptus_gallina AAUA---UU---CCCCGUG----U-C--U-AU-UGUGACGAC----U--- Uroleptus_pisces AAUA---UU---CCUUGUG----U-C--U-AU-UGUGACGAC----U--- Paruroleptus_lepisma AAUA---UU---CCUUGUG----U-C--U-AU-UGUGACGAC----U--- Urostyla_grandis AAUA---UU---CCUCGUG----U-C--U-AU-UGUGAUGAU----U--- Balantidium_coli GC------U--------CA----U-U--A-AA-ACAGUUAUA----G--U Euplotes_aediculatus CA-----AU-------AAA----U-C--A-UG-UAGGUUUCU----G--- Tetrahymena_thermophila GA-----CC----AAUCGC----A-G--C-AA-UGUGAUUGAG---A--U Bangia_sp._(Northwest_Territories/NWT) UC-----GU---GCUUCUU----C-G--G-GAGCACUUUGAG----A--U Bangia_sp._(Virgin_Islands/VIS7) UU-----GC---ACCGGUA------U--U-GU-GGUGAGUCA-------- Erythrotrichia_carnea AA-----CC---AAUCGGG----C-U--U-GC-CCGUUUUUGG---UG-A Rhodochaete_parvula CC-----GG---CUUUGCC----G-U--U-C--UGGGUGAAU----C--A Compsopogon_coeruleus CUCG---GC---AAGGAAU----UGC--C-GCUUGUGGUGAA----U--C Porphyridium_aerugineum CA-----GCC--GGGCUUG----C-C--C-GU-UUUGGUGAG----U--C Rhodella_maculata AUC----GG----CUUGCC----G-U--U-UU-UGGUGAAUC----A--- Aulacoseira_ambigua AA-----CC----CUCUCU----C-G--G-GA-GGUUCUUUGG---G--U Aulacoseira_baicalensis CA-----AC---CCUCUUU----C-G--G-GA-GGUUCUCUGG---G--U Stephanopyxis_nipponica AAACC--AU---CCCUCUUU---U-A--G-AG-GCUAGUGUG----GU-G Coscinodiscus_radiatus AA-----GC---CAACCCU----C-C--U-UG-GAGGAAAUA----UU-G Corethron_criophilum CU-----UU---UUCGGAA----G-U--G-UU-UUUGGUGAU----U--C Amphora_cf._capitellata AC-----CC---CUUCGGG----G-U-------GAUGUGGUG-------A Sellaphora_pupula_f._capitata AA-----CC---CCUCCGG----G-G--U-GA-UGUGGUGAU-------U Thalassiosira_antarctica AA-----CC---CCUUCGG----G-G--U-GA-UGUGGUGAU-------U Encyonema_triangulatum AA-----CC---CCUCACG----G-G--U-GA-UGUGGUGAU-------- Achnanthes_bongranii AA-----CC---CCUUCGG----G-G--U-GA-UGUGGUGAU-------U F -------------------------------------------------- Diatoma_tenue AA-----CC---GCUUCGG----C-G--U-GA-UGUGGUGAU-------U Grammatophora_marina -C-----CA---ACUCCUU----C-G--G-GA-UGAUGUGGU----G--- Thalassionema_sp._p474 CA-----AC---UCCUUCGG---G-A--U-GU-UUUGGUGAA----U--C Rhaphoneis_belgicae AA-----CC---CCUUCGG----G-G--U-GA-UGUGGUGAG-------U Undatella_sp._p446 AA-----CC---CCUUCGG----G-G--U-GA-UGUGGUGAU----U--- Cymatosira_belgica CC-----UC---UUCGGAG----G-C--G-U--CCAGGUGAU----U--C Odontella_sinensis CA-----AC---CCUCUUC----C-G--A-GG-UGCUCUGGU----G--- Ditylum_brightwellii AC-----CA---ACCCUCCU---C-G--G-AG-GUGAUGUGG----U--G Lithodesmium_undulatum AC-----CA---ACCCUCCU---C-G--G-AG-GUGAUGUGG----U--G Thalassiosira_eccentrica CA-----AC---CCUCUUC----G-G--A-GG-UGCUUUGGU----G--A Thalassiosira_pseudonana AC-----CG-----UCUUC------G--G-GA-CGUGCUUUG----G--U Skeletonema_costatum UU-----CA----CUCUUC----G-G--A-GU-UGAUUUGGU----G--A Pleurosira_cf._laevis AA-----CC---ACUUCGG----U-G--G-UU-CUUUGGUGA----U--U Lauderia_borealis AAAC---CA---ACUCCCCU---C-G--G-GA-GUGCUGUGG----U--G F -------------------------------------------------- Bolidomonas_mediterranea UAU----GCU--UCGGCAUU---U-U--U-GU-GGUGAUUCA-------- Bolidomonas_pacifica UC-----GG---CUUUUUU----G-U--G-GU-GAUUCAUAA-------U Labyrinthuloides_minuta AC-----CA---AUGCAGG----G-U--U-UUCCCUGGUGUUGUG-G--U Leptocylindrus_danicus CU-----UC---CCUGCUU----G-C--G-GUGAUUUAGGCG----A--G Chaetoceros_sp. GA-----AA---CCAACCC----G-U--U-UC-GGCGGUGUC----C--U Aphanomyces_invadans AA----------UUCACUU------C--G-GU-GAUUUUGUG----U--U Lagenidium_giganteum AA-----CC---AAUGCAG----U-C--U-UC-GGGCUGGUA----U--U Melosira_varians AA-----ACC--AUCCUCG----U-U--U-GA-GUAUAUGGU-------G Blastocystis_hominis GC----------UUCGGCA----U-G--A-UA--GUGAGUAA----U--A Perkinsus_marinus AA-----CCA--ACCUAGGCUC-C-G--C-CU-AGUCCUUGUUG--G--U Toxoplasma_gondii CA-----AC---CCACCUU----C-C--G-GU-GGUCCUCAG----G--U Alexandrium_fundyense CA-----AU---UCAAGCU----A-UGCU-UG-GACACUUGA----A--U Babesia_bigemina AC-----GG-------UGA----A-A--C-U---GCGAAUGG-------C Babesia_canis UA-----AA---CCUCCGC----U-U--G-GU-UUUCGGUGA----U--U Babesia_sp._'Oklahoma_dog' GU-----UU---AUUAGUUC---U-A--A-AC-CUCCCUUGG----U--U Babesia_microti CC-----CU---UUGGGUA----A-U--C-G---GUGAUUCA-------U Babesia_microti CC-----CU---UUGGGAA------U--C-G---GUGAUUCA-------U Babesia_microti CC-----CU---UUGGGUA----A-U--C-G---GUGAUUCA-------U Babesia_microti CC-----UU---UGGGUAA------U--C-G---GUGAUUCA-------U Babesia_microti CC-----UU---CGGGUAA------U--C-G---GUGAUUCA-------U Babesia_rodhaini -A-----CC---AUCCCCU----U-U--G-GG-UACCGGUGA----U--U Babesia_gibsoni AC-----CU---UCCCGCU----U-CG-G-CGGUUCCCGGUG----A--U Babesia_bovis -G-----AG---ACUGCGA----A-U--G-GC-UCAUUACAA----C--A Jakoba_libera AA-----CCA--AUCGGCU----U-U--G-CC-GACCGGGUGA---U--U Reclinomonas_americana CC-----CU---GCGUCCG----C-G--C-AG--GUCGGGUG----A--U Bonamia_ostreae UG-----CA----UAUUAG----C-U--G-AA-AACCAACUUUGGUU--G Audouinella_dasyae AG-----AU---AUCAAAC------C--A-AU-GUGUGGUGA----U--U Audouinella_hermannii AA-----AC---CAAUGUG------U--G-GU-GAUUCAUGA-------U Nemalion_helminthoides AA----------CCAAUAC----G-U--G-GU-GAUUCAUGA-------U Batrachospermum_gelatinosum AA-----AC---CAAUGUG------U--G-GU-GAUUCAUGA-------U Nemalionopsis_tortuosa AA-----GC---CAACAUA------U--G-GU-GAUUCAUAA-------U Thorea_hispida GC-----CA---ACGAAUG----G-U--G-A---GUCAUGAU-------U Thorea_violacea GC-----CA---ACGAAUG----G-U--G-A---GUCAUGAU-------U Thorea_violacea CC-----CG---UGGUACC----A-A--U-UA-GAUAUCAAGCC--AA-C Thorea_violacea CC-----CG---UGGUACC----A-A--U-UA-GAUAUCAAGCC--AA-C Nemalionopsis_shawii AA-----GC---CAACAUA------U--G-GU-GAUUCAUAA-------U Balbiania_investiens AA-----AC---CAAUGUG------U--G-GU-GAUUCAUGA-------U Batrachospermum_macrosporum AA-----AC---CAAUGUA------U--G-GU-GAUUCAUGA-------A Ahnfeltia_plicata UA-----GA---UAACAGG----C-C--G-AC-GCUUGACGA----U--U Corallina_officinalis GA------U---AACAACA----C-C--A-AC-AUAUGGUGA----U--U Rhodogorgon_carriebowensis AG-----AU---AACAACA----C-C--A-AC-AUUUGGUGA----U--U Bonnemaisonia_hamifera AAAU---UG---GAUAUAC----A-A--A-CC-AAUGUUUGG----U--G Gelidium_vagum GU-----AU----AAAUUG----G-A--G-AU-ACAAACCAAU---AU-U Chondrus_crispus AA-----AC---CAAUGUU------U--G-GU-GAUUCACAA-------U Halymenia_plana GU-----AU----AAAUUG----G-A--G-AU-ACAAACCAAU---GU-U Rhodymenia_leptophylla AA-----AC---CAAUAUU------U--G-GU-GAUUCACAA-------U Plocamiocolax_pulvinata AA-----AC---CAAUGUU------U--G-GU-GAUUCACAA-------U Ceramium_rubrum GG-----AG---AUACAAA----C-C--A-AU-GUUUGGUGA----U--U Gracilariopsis_sp. CA----------GCUUUUU------U--G-GU-GAUUCUAGA-------U Bostrychia_moritziana CA-----AUC--GUUCUCG----U-G--G-UA-CAAAAUAGAG---A--U Hildenbrandia_rubra GA-----GA---CACAAGC----C-A--A-UA-UUUUGGUGA----U--U Dixonielloa_grisea -G-----GC----UUGCCC------U--U-GU-GGUGAAUCA-------- Naegleria_fowleri UU-----AC-----CUAUC----A-G--C-UC-GUUGCUUGU----U--U Naegleria_gruberi UU-----AC-----CUAUC----A-G--C-UC-GUUGUUUGU----U--U Hexamita_sp. ------------------G----------------------C-------U Tritrichomonas_foetus AU-----GC---GAUUGUU------U--C-AC-UGAGUUGAG----AA-A Amblyospora_khaliulini ----------------CUG---------------------UG-------- Edhazardia_aedis -------------------------------------------------- Amblyospora_connecticus -------------CUUGUG----------------------A-------- Intrapredatorus_barri -------------------------------------------------- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. ---------------UCUG-------------------UGAA-------- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii UA----------------G------------------------------- Weiseria_palustris UA----------------G------------------------------- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani UA----------------G--------------AAUGAAGUG-------- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae ----------------------------------------UU-------U Thelohania_solenopsae UA------------------------------------------------ Visvesvaria_acridophagus -------------UUUACG------------------------------- Bacillidium_sp. -A-----GC---------G---------------AAUCUAAA-------- Pseudonosema_cristatellae UA----------------G---------------------CG-------- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum UA----------------G----------------------G-------- Pleistophora_mirandellae ------------------G-------------------UAAG-------- Trachipleistophora_hominis CA--------------------------------------AG-------- Vavraia_culicis AA-----GC----------------------------------------- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii ------------------G-------------------UAAG-------- F -------------------------------------------------- Dictyocoela_gammarellum ------------------G-------------------UAAG-------- Microsporidium_prosopium GU----------------G-----------------UAAGCG-------- Antonospora_scoticae -A-----GC----------------------------------------- Paranosema_whitei CA------------------------------------------------ #=GC SS_cons .......<<..............<.<..<.<<..............<... Cynomorium_coccineum UAAU--------------AU-A-U-A-------------G-U-------- Cytinus_ruber UGGU-------------CUU-U-U-A------------AG-U-------- Nicotiana_tabacum UGGU-------------GUU-U-C-C------------AG-U-------- Spinacia_oleracea UGGU-------------GUU-U-C-C------------AG-U-------- Zea_mays UGGU-------------GUU-U-C-C------------AG-U-------- Marchantia_polymorpha UAGU----------GGUGUU-U-C-C------------AG-U-------- Ricinus_communis --U-----------GGUGUU-U-C-C------------AG-U-------- F UUG-----------CCAGAU-U-G-C--------GAUGAG-U-------- Prototheca_wickerhamii UCGA----------GCUAAA-U-A-U--------ACUGAG-U-------- Pedinomonas_minor --G-----------CAAGUU-A-G-A--------G-UGGG-U-------- Nephroselmis_olivacea UCGA------GGGUCGGCGC-C-A-U-----CU-GCAUAG-U-------- Pyramimonas_parkeae UUC-----------GGAGAA-G-A-A--------UCAUAG-U-------- Chlamydomonas_reinhardtii -AG-----------CAAU-U-U------------GUGUAG-U-------- Acanthamoeba_castellanii ----------------AU-U-U-A-C--------UUUAAG-U-------- Pilostyles_thurberi UUU-----------AUCU---A-A-C--------ACUUU--U-------- Chondrus_crispus UAG-----------UUAUAA-A-A-U--------UAGUAG-C-------- Toxoplasma_gondii UAU-----------UAAU-----A----------UAUCA--U-------- Neurospora_crassa CCCC------UA--AAACCU-C-U-U-----AAUUAAAAG-U-------- Podospora_anserina UAUU---CUUUC--CUUUCU-G-U-AAAA--CU-GGUUAU-U----AAGG Penicillium_chrysogenum CUAA------UA--UUUAAA-U-U-A-----AG-UAGUAG-U-------- Emericella_nidulans UUA-------UU--AAAC-U-A---------AG-UAGUAG-U-------- Saccharomyces_cerevisiae UUG-------AU--AAGA-U-A-A-U-----AA-AUAUG--U-------- Williopsis_saturnus_var._mrakii UUA-------UA--UAAUAU-U-A-A-----UA-UUAUA--U-------- Pedinomonas_minor -----------------U-U-U---------AA-UUAUUG-U-------- Plasmodium_falciparum -----------------G-----A-U-----AA-UAUCA--U-------- Babesia_bovis UUU-------UA--AUAU-U-A-U-U-----UA-AAUUA----------- Tetrahymena_pyriformis UAAA------UG--UAUAGC-G-U-C-----AA-GGUGAG-U----AU-- Suillus_sinuspaulianus UUGC---A--UU--AUAUAA-A-A-U-----UA-UAAUUG-U-------- Paramecium_tetraurelia UAAA---A--UG--CAAAGA-U-C-U-----AG-UUUUAA-A----AU-- Dictyostelium_discoideum --G----C--UA--UUGA---A-A-------AA-UAGAG--U----AG-- Physarum_polycephalum GCC----U--AC--CAAGCC-G-A-UG----AU-CUCUAG-C----UG-- Pylaiella_littoralis UCG----A--AU--GAUU-------------UA-GAUCA--U----GG-- Prototheca_wickerhamii UUU----U--UA--UAAA-U-A-U-A-----GA-AAAAG--U----AG-- Hydnora_africana UAG----A--AC--AACU-------------AU-UUCUAG-U----AG-- Codium_fragile UUU----G--UA--GAAAUU-U---------AA-UAUUAG-U-------- Caulerpa_sertularioides UCC----U--UC--GGGG-C-U-G-------UU-UAUGCG-U----GG-- F UGG----C--UU--UACG---G-C-U-----AU-UAUUUA------GU-- F CAA----A--UG--AAGUUU-U-G-U-----UA-UUUUUGAU----GU-- Glaucocystis_nostochinearum -AG----A--UC--GAAA-------------GA-UCUUAG-U-------- Gloeochaete_wittrockiana --A----A--UU--GAAA-------------AA-UUUUAG-U-------- Cyanophora_paradoxa --G----A--UC--GCAA-------------GA-UCUUAG-U-------- Cyanophora_paradoxa --G----A--UC--GCAA-------------GA-UCUUAG-U-------- Cryptomonas_sp. -AA----A--GU--UUUU-------------AA-CUUUAG-U-------- Palmaria_palmata --G----A--AG--GUUU-------------UA-CCUUAG-U-------- Heterosigma_akashiwo UUU----U--CU--UAAA---A-A-------AC-UGAAAG-U-------- Skeletonema_pseudocostatum --G----A--GU--UUUU-------------AA-CUCUAG-U-------- Pylaiella_littoralis --A----G--UG--UUAA-------------AA-CUUUAG-U-------- Cyanidium_caldarium --G----A--GA--AUUU-------------UA-UUCUAG-U-------- Emiliania_huxleyi --G----A--GU--UUUU-------------AA-CUCUAG-U-------- Euglena_gracilis UAC----U--AG--CAAU---A-G-U-----AA-UUUAG--U----GG-- Anabaena_sp. --G----U--CU--CUUC-------------GG-AGAUAG-U-------- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 --G----G--CU--CUUC-------------GG-AGCUAG-U-------- F -------------------------------------------------- Oscillatoria_agardhii --A----U--CC--UUCG-------------GG-AUUUAG-U-------- Pleurocapsa_sp. --A----G--UC--UUUU-------------AG-ACUUAG-U-------- Microcystis_aeruginosa --A----A--UC--UUCG-------------GA-UUCUAG-U-------- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos -----------------A-------------UA-UAGAG-------UA-- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae -AG----A--AU--UGUA-------------AA-AUAGGG-U----UG-- Streptococcus_pyogenes -AG----A--AU--UGUA-------------AA-AUAGGG-U----UG-- Bacillus_anthracis UUG----C--UC--UUAU-------------GA-AGUUA-------GC-- Bacillus_cereus UUG----C--UC--UUAU-------------GA-AGUUA-------GC-- Enterococcus_faecalis UUGC---A--CU--CAAUUG-G-A-------AA-GAGGAG-U-------- Enterococcus_faecium UUG----C--UC--CACCGG-A-A-A-----AA-GAGGAG-U-------- Listeria_monocytogenes UUG----C--UC--UUCC-------------AA-AGUUAG-U-------- Bacillus_subtilis GAG----C--UU--GCUC-----C-C-----GA-UGUUA-------GC-- Bacillus_subtilis_A CUU----G--CU--CCCU-------------GA-UGUUAG-C-------- Bacillus_halodurans CUU----G--CU--CCUA-------------GA-GGUUAG-C-------- Staphylococcus_aureus UUG----C--UU--CUCU-------------GA-UGUUA-------GC-- Staphylococcus_aureus_N315 UUG----C--UU--CUCU-------------GA-UGUUA-------GC-- Lactococcus_lactis_subsp._lactis UUG----U--AC--CGAC-------------UG-GAUGAG-C----AG-- Streptococcus_pyogenes UUG----C--AC--CGGU-------------UC-AAGGAG-U----UG-- Lactobacillus_acidophilus CGG----U--GA--UGACGU-U-G-GG----AA-CGCUAG-C-------- Mycoplasma_capricolum --G----G--UG--CUUG-------------CA-CCUCAG-U-------- Mycoplasma_mycoides --G----G--UG--CUUG-------------CA-CCUCAG-U-------- Erysipelothrix_rhusiopathiae_(alpha-P15) UUG----C--UC--CUUG-------------GA-ACUUAG-U-------- Clostridium_innocuum UUGC---U--UC--CAAA-----A-------AG-ACUUAG-U-------- Mycoplasma_genitalium --A----G--UA--GCAA-------------UA-CUUUA-------GA-- Mycoplasma_pneumoniae --A----G--UA--GUAA-------------UA-CUUUA-------GA-- Mycoplasma_pneumoniae --A----G--UA--GUAA-------------UA-CUUUA-------GA-- Mycoplasma_gallisepticum --U----G--UA--GCAA-------------UA-CAUUA-------GA-- Ureaplasma_urealyticum --A----G--CC--UUUU-------------AG-GCUUAG-U-------- Ureaplasma_urealyticum --A----G--CC--UUUU-------------AG-GCUUAG-U-------- Mycoplasma_hyopneumoniae -UU----C--GC--UAAA-------------AU-AUUUAG-U----AG-- Fusobacterium_necrophorum UCG----A--GU--CUUC-------------GA-CUUGGG-U----GG-- Fusobacterium_nucleatum_subsp._nucleatum UUU----U--AA--CUUC-------------GA-UUUGGG-U-------- Streptobacillus_moniliformis AAG----C--UU--GCUUAC-A-U-A-----GA-CUACA--U----GG-- Clostridium_botulinum_type_f CUU----C--GG--GAAG-------------UG-GAUUAG-C-------- Clostridium_tetani CUU----C--GG--GAAG-------------UG-GAUUAG-C-------- Clostridium_perfringens CUU----C--GG--GAAA-------------CG-GAUUAG-C-------- Clostridium_difficile -CG----A--UU--UACU-------------UC-GGUAA-------AG-- Eubacterium_brachy CGG----A--UG--AAAUUU-A-A-A-----AU-GGAAAG-C-------- Epulopiscium_sp. --C----U--AC--UUCG-------------GU-AGUUAG-U-------- Heliobacterium_chlorum UUC----G--AU--GGAA-------------GC-UCUUAG-U-------- Glycine_max CAGA---A--GG--AAAAGA-G-G-C-----UC-CUAGCG-UG---AA-- Oenothera_berteroana GGA----A--AA--GAGGCU-C-C-U-----AG-CGUUAG-U----CC-- Secale_cereale GGA----A--AA--GAGGCU-C-C-U-----AG-CUAAAG-U----UG-- Triticum_aestivum GGA----A--AA--GAGGCU-C-C-U-----AG-CUAAAG-U----UG-- Zea_mays GGA----A--AA--GAGGCU-C-C-U-----AG-CUAAAG-U----UG-- Marchantia_polymorpha UUGC---A--UU--CGGAGA-A-G-AA----AA-CCUUUU-U----UC-- Nephroselmis_olivacea --C----U--UC--UGAC-------------AA-GAAGAG-U-------- Gluconacetobacter_liquefaciens --A----A--CC--UUUC-------------GG-GGUUAG-U-------- Bradyrhizobium_japonicum --C----G--UA--GCAA-------------UA-CGUCAG-C-------- Rhodoblastus_acidophilus --C----A--UA--GCAA-------------UA-UGUCAG-U-------- Azorhizobium_caulinodans --C----G--CC--CAGC-------------AA-UGGGA-------GC-- Bartonella_quintana -CA----C--UC--UUUU-------------AG-AGUGAG-C-------- Mesorhizobium_loti --C----G--CC--CCGC-------------AA-GGGGA-------GC-- Agrobacterium_tumefaciens --C----G--CC--CCGC-------------AA-GGGGA-------GU-- Bartonella_bacilliformis -CA----C--UC--UUUU-------------UG-AGUGAG-C-------- Bartonella_henselae -CA----C--UC--UUUU-------------AG-AGUGAG-C-------- Brucella_melitensis --C----G--CC--CCGC-------------AA-GGGGA-------GC-- Rhodobium_orientis --C----G--CA--CCUU-------------CG-GGUGA-------GU-- F -------------------------------------------------- Rickettsia_bellii CUU----G--CU--CCAA-------------UU-AGUUAG-U-------- Rickettsia_felis_URRWXCal2 CUU----G--CU--CCAA-------------UU-AGUUA-------GU-- Rickettsia_prowazekii CUC----G--CU--UUAG-------------UU-AAUUAG-U-------- Rickettsia_prowazekii_(str._Madrid_E) CUC----G--CU--UUAG-------------UU-AAUUAG-U-------- Rickettsia_rickettsii CUU----G--CU--CCAA-------------UU-AGUUAG-U-------- Acinetobacter_calcoaceticus -CU----U--CG--GUAA-------------CU-GACUAG-C-------- Psychrobacter_pacificensis UUG----C--UA--UCAG-------------GC-GUCGAG-C-------- Chromohalobacter_marismortui UUG----C--UG--GACG-------------CU-GACGAG-C-------- F -------------------------------------------------- Pseudomonas_aeruginosa -CU----U--GC--UCCU-------------GG-AUUCA-------GC-- Pseudomonas_aeruginosa -CU----U--GC--UCCU-------------GG-AUUCA-------GC-- Pseudomonas_sp. -CU----U--GC--UCCC-------------GG-AUUCA-------GC-- Pseudomonas_putida -CU----U--GC--UCUU-------------CG-AUUCA-------GC-- Coxiella_burnetii UCC----U--CC--UGGC-------------GG-CGAGAG-U-------- Methylococcus_capsulatus CCU----U--CG--GGCG-------------CU-GACGAG-U-------- Legionella_pneumophila UUG----C--UA--GACA-----G-------AU-GGCGAG-U-------- Legionella_pneumophila UUG----C--UA--GACA-----G-------AU-GGCGAG-U-------- Allochromatium_vinosum -CU----U--CG--GCCU-------------GA-GUAGAG-U-------- Beggiatoa_sp._1401-13 --G----G--UA--GCAA-------------UA-CCUUAG-U-------- Aeromonas_hydrophila UUG----C--UA--CUUU-U-G---------CC-GGCGA-------GC-- Shewanella_putrefaciens ACU----U--CC--UGAG-------------GU-GGCGAG-C-------- Citrobacter_freundii UUG----C--UC--CUUG-----G-------GU-GACGAG-U-------- Shigella_dysenteriae GCU----U--GC--UGCU-U-U-G-------CU-GACGAG-U-------- Klebsiella_pneumoniae UUG----C--CC--UCGG-------------GU-GACGAG-C-------- Plesiomonas_shigelloides UUG----C--UC--CUUG-----G-------GU-GACGAG-C-------- Yersinia_pestis GUU----U--AC--UACU-U-U-G-------CC-GGCGAG-C-------- F -------------------------------------------------- Shigella_dysenteriae UUG----C--UG--UUUG-------------CU-GACGAG-U-------- Escherichia_coli_O157:H7 GCU----U--GC--UUCU-U-U-G-------CU-GACGAG-U-------- Escherichia_coli_O157:H7_EDL933 GCU----U--GC--UUCU-U-U-G-------CU-GACGAG-U-------- Escherichia_coli GCU----U--GC--UUCU-U-U-G-------CU-GACGAG-U-------- Escherichia_coli_K12 GCU----U--GC--UUCU-U-U-G-------CU-GACGAG-U-------- Escherichia_coli GCU----U--GC--UUCU-U-U-G-------CU-GACGAG-U-------- Escherichia_coli GCU----U--GC--UUCU-U-U-G-------CU-GACGAG-U-------- Escherichia_coli GCU----U--GC--UUCU-U-U-G-------CU-GACGAG-U-------- Salmonella_typhimurium UUG----C--GC--UUCG-------------CU-CUCUAG-U-------- Serratia_marcescens UUG----C--UC--CCUG-----G-------GU-GACGA-------GC-- Edwardsiella_tarda --U----U--GU--AAAA-------------UA-GACGA-------GC-- Proteus_vulgaris GCU----U--GC--UUUC-U-U-G-------CU-GACGAG-C-------- Vibrio_cholerae UUG----U--UC--GUUG-----G-------GU-GGCGA-------GC-- Vibrio_cholerae UUG----U--UC--CUUG-----G-------GU-GGCGA-------GC-- Vibrio_cholerae UUG----U--UC--CUUG-----G-------GU-GGCGA-------GC-- Vibrio_cholerae UUG----U--UC--CUUG-----G-------GU-GGCGA-------GC-- Vibrio_cholerae UUG----U--UC--CUUG-----G-------GU-GGCGA-------GC-- Vibrio_cholerae UUG----U--UC--CUUG-----G-------GU-GGCGA-------GC-- F -------------------------------------------------- Haemophilus_influenzae GCU----U--GC--UUUC-U-U-G-------CU-GACGAG-U-------- Haemophilus_influenzae GCU----U--GC--UUUC-U-U-G-------CU-GACGAG-U-------- Haemophilus_influenzae GCU----U--GC--UUUC-U-U-G-------CU-GACGAG-U-------- Haemophilus_influenzae GCU----U--GC--UUUC-U-U-G-------CU-GACGAG-U-------- Haemophilus_influenzae_(operons_A-F) GCU----U--GC--UUUC-U-U-G-------CU-GACGAG-U-------- Pasteurella_multocida GCUU---G--CU--UUCU-U-U-G-------CU-GACGAG-U-------- Pasteurella_multocida GCUU---G--CU--UUCU-U-U-G-------CU-GACGAG-U-------- Xanthomonas_albilineans AAU----A--CC--AUGG-------------GU-GGCGAG-U-------- Xanthomonas_campestris UUG----C--UC--UUAUGG-----------GU-GGCGAG-U-------- Xylella_fastidiosa UAA----U--AC--CAUG-----G-------GU-GGCGA-------GU-- Dichelobacter_nodosus GCU----U--GC--UAUG-------------UA-ACCUAG-U-------- Francisella_tularensis UCU----U--AG--GAUG-------------CU-GACGAG-U-------- Bordetella_parapertussis CUU----C--GG--CCUG-------------GU-GGCGA-------GU-- Bordetella_pertussis CUU----C--GG--CCUG-------------GU-GGCGA-------GU-- Bordetella_bronchiseptica CUU----C--GG--CCUG-------------GU-GGCGA-------GU-- unidentified_proteobacterium CUU----C--GG--CCUG-------------GC-GGCGAG-U-------- Burkholderia_mallei -CU----U--CG--GCUG-------------GU-GGCGAG-U-------- Burkholderia_sp. --U----A--AU--CCUG-------------GU-GUCGAG-U-------- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae UUG----C--UU--CUCG-----G-------GU-GGCGA-------GU-- Comamonas_testosteroni UCU----U--CG--GAUG-------------CU-GACGAG-U-------- Desulfovibrio_desulfuricans CUU----C--GG--UCCU-------------GA-GUAAAG-U-------- Myxococcus_xanthus GGG----C--AA--CCCU-------------UA-GUAGA-------GC-- Deferribacter_thermophilus UUC----G--GC--CAGU-------------GA-GUACA-------CC-- Borrelia_burgdorferi -UG----U--AG--CAAU-------------AC-AUUCAG-U-------- Borrelia_burgdorferi -UG----U--AG--CAAU-------------AC-AUUCAG-U-------- Borrelia_hermsii -UG----U--AG--CAAU-------------AC-AUUCA-------GU-- Spirochaeta_aurantia -GG----G--CA--ACCC-------------CA-UGAGA-------AU-- Treponema_pallidum_(rRNA_A) -UU----U--UC--GUUU-------------CU-CUAGAG-U-------- Leptonema_illini --C----A--CU--UCGG-------------GU-GGCGA-------GC-- Leptospira_interrogans --G----A--GU--AGCA-------------AU-ACUCA-------GC-- Chlamydia_trachomatis_D/UW-3/CX -UU----U--CG--ACGA-------------UU-GUUUAG-U-------- Chlamydia_trachomatis_L2/434/BU -UU----U--CG--GCAA-------------UU-GUUUAG-U-------- Chlamydia_muridarum -CU----U--CG--GUGA-------------UU-GUUUAG-U-------- Chlamydophila_pneumoniae_AR39 -CU----U--CG--GUUG-------------UU-AUUUAG-U-------- Chlamydophila_pneumoniae -CU----U--CG--GUUG-------------UU-AUUUAG-U-------- Chlamydophila_pneumoniae_J138 -CU----U--CG--GUUG-------------UU-AUUUAG-U-------- F -------------------------------------------------- Chlamydophila_psittaci -CU----U--CG--GUUG-------------UU-AUUUAG-U-------- Deinococcus_radiodurans --C----G--GU--CUUC-------------GG-ACCGAG-U-------- Deinococcus_radiodurans --C----G--GU--CUUC-------------GG-ACCGAG-U-------- Bacteroides_fragilis GCUU---G--CU--UUCU-U-U-G-------CU-GGCGA-------CC-- Porphyromonas_gingivalis GCU----U--GC--UAAGGU-U-G-------AU-GGCGA-------CC-- Prosthecochloris_vibrioformis GCC----U--UC--GGGU-------------GC-GAGUA--C----UU-- Campylobacter_jejuni UUG----C--UA--GAAG-------------UG-GAUUAG-U-------- Campylobacter_jejuni UUG----C--UA--GAAG-------------UG-GAUUAG-U-------- Campylobacter_sputorum UAA----C--AA--UAAGCU-U-U-U-----UU-GAAGCU-U----UA-- F -------------------------------------------------- Helicobacter_pylori_J99 UUG----C--UA--GAAG-------------UG-GAUUAG-U-------- Helicobacter_pylori UUG----C--UA--GAGU-----G-------CU-GAUUAG-U-------- Acidobacterium_capsulatum CUU----C--GG--UCCU-------------GA-GUACAG-U-------- Holophaga_foetida -UG----U--GC--CCGC-------------AA-GGUGC-------AU-- Arthrobacter_globiformis -CU----U--GC--ACCG-------------GG-GAUUAG-U-------- Micrococcus_luteus --C----U--UG--CUGG-------------GG-GAUUAG-U-------- Frankia_sp. --G----A--GC--UUCG-------------GC-UCUCA-------GC-- Streptomyces_bottropensis CAC----U--UC--GGUG-------------GG-GAUUAG-U-------- Streptomyces_scabiei CAC----U--UC--GGUG-------------GG-GAUUAG-U-------- Streptomyces_neyagawaensis CCC----U--UC--GGGG-------------UG-GAUUAG-U-------- F -------------------------------------------------- Streptomyces_sp. CCU----U--UC--GGGG-------------UG-GAUUAG-U-------- Streptomyces_acidiscabies CCC----U--UC--GGGG-------------UG-GAUUAG-U-------- Streptomyces_griseus CCU----U--UC--GGGG-------------UG-GAUUAG-U-------- Streptomyces_ornatus CCU----U--UC--GGGG-------------UG-GAUUAG-U-------- Streptomyces_subrutilus CCC----U--UC--GGGG-------------UG-GAUUAG-U-------- Streptomyces_bikiniensis CCC----U--UC--GGGG-------------UG-GAUUAG-U-------- Streptomyces_galbus CAC----U--UC--GGUG-------------GG-GAUUAG-U-------- Streptomyces_hygroscopicus CAC----U--UC--GGUG-------------GG-GAUUAG-U-------- Streptomyces_lincolnensis CAC----U--UC--GGUG-------------GG-GAUUAG-U-------- Streptomyces_coelicolor CAC----U--UC--GGUG-------------GG-GAUUAG-U-------- Streptomyces_tendae CAC----U--UC--GGUG-------------GG-GAUUAG-U-------- Streptomyces_ambofaciens CAC----U--UC--GGUG-------------GG-GAUUAG-U-------- Streptomyces_eurythermus CCU----U--CG--GGAG-------------GG-GAUUAG-U-------- Streptomyces_nodosus CCC----U--UC--GGGG-------------UG-GAUUAG-U-------- Streptomyces_sampsonii CUU----U--CG--GGCG-------------GG-GAUUAG-U-------- Streptomyces_glaucescens CAC----U--UC--GGUG-------------GG-GAUUAG-U-------- Streptomyces_pseudogriseolus CAC----U--UC--GGUG-------------GG-GAUUAG-U-------- Streptomyces_caelestis CAC----U--UC--GGUG-------------GG-GAUUAG-U-------- Streptomyces_bluensis UCU----U--CG--GAGG-------------CG-GAUUAG-U-------- Streptomyces_espinosus CAC----C--UC--GGUG-------------GG-GAUUAG-U-------- Streptomyces_mashuensis CCU----U--CG--GGAG-------------GG-GAUUAG-U-------- Streptomyces_rimosus CCC----U--UC--GGGG-------------UG-GAUUAG-U-------- Streptomyces_limosus CUU----U--CG--GGCG-------------GG-GAUUAG-U-------- Streptomyces_odorifer CUU----U--CG--GGCG-------------GG-GAUUAG-U-------- Streptomyces_felleus CUU----U--CG--GGCG-------------GG-GAUUAG-U-------- Streptomyces_albidoflavus CUU----U--CG--GGCG-------------GG-GAUUAG-U-------- Streptomyces_gougerotii CCC----U--UC--GGGG-------------UG-GAUUAG-U-------- Streptomyces_rutgersensis CCC----U--UC--GGGG-------------UG-GAUUAG-U-------- Streptomyces_intermedius CCC----U--UC--GGGG-------------UG-GAUUAG-U-------- F -------------------------------------------------- Streptomyces_thermoviolaceus CCU----U--CG--GGGG-------------UG-GAUUAG-U-------- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus CCU----U--CG--GGAG-------------GG-GAUUAG-U-------- Streptomyces_megasporus CUU----C--GG--GUGG-------------GG-UCGGAG-U-------- Streptomyces_thermolineatus CCC----U--UC--GGGG-------------UG-GAUCAG-U-------- Mycobacterium_tuberculosis UCU----U--CG--GAGA-------------UA-CUCGAG-U-------- Mycobacterium_tuberculosis UCU----U--CG--GAGA-------------UA-CUCGAG-U-------- Mycobacterium_avium UCU----U--CG--GAGG-------------UA-CUCGAG-U-------- Mycobacterium_leprae CUU----U--UU--UAGA---G-A-------UA-CUCGAG-U-------- Mycobacterium_leprae CUU----U--UU--UAGA---G-A-------UA-CUCGAG-U-------- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides CCC----U--UC--GGGG-------------UA-CACGA-------GC-- Rhodococcus_erythropolis GCC----U--UC--GGGG-------------UA-CACGA-------GC-- Corynebacterium_diphtheriae -CU----U--GC--UAGG-------------UA-CUCGAG-U-------- Actinomyces_israelii UUU----U--GC--GGGG-------------UG-GGUUAG-U-------- Brachyspira_hyodysenteriae GGC----A--AC--UGGA-------------UA-AGUUA-------GC-- Geotoga_subterranea UUG----C--UC--CUUG-------------AG-UAUUAG-U-------- Petrotoga_miotherma CUU----C--GG--AUGU-------------AU-AAUCAG-U-------- Brevinema_andersonii GCU----U--GC--UCUA-U-U-G-------CC-GGCGAG-U-------- Herpetosiphon_aurantiacus --C----A--UU--CUUC-------------GG-AAGGAG-U-------- F -------------------------------------------------- Aquifex_aeolicus UUG----G--GG--CCGG-------------CC-GCUGAG-C-------- Aquifex_pyrophilus CUG----G--GA--GCGG-------------GU-GCUGA-------GC-- Thermotoga_maritima UCG----G--GG--AGGA-------------GU-ACCCA-------GC-- Thermotoga_maritima UCG----G--GG--AGGA-------------GU-ACCCA-------GC-- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -UU----U--UA--CUCC-------------GU-GGUCA-------GC-- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -UU----U--UA--CUCC-------------GU-GGUCA-------GC-- Thermus_aquaticus -GG----G--UA--UCUC-------------AC-GGUCA-------GC-- Thermomicrobium_roseum GCG----C--UC--UGGC-------------GU-GCCGAC-C----GU-- Pirellula_marina -AG----A--GC--UCGA-------------GG-GGACA-------GC-- Pirellula_staleyi -UA----G--CA--AUAC-------------AU-GGAGA-------GC-- Planctomycetaceae_Schlesner_670 --G----U--CA--GCAA-------------UG-ACCGA-------GC-- Gemmata_obscuriglobus --A----U--CC--CGCA-------------AG-GGGAA-------CC-- Isosphaera_pallida --A----C--GG--CCGC-------------AA-GGCUA-------GU-- Pyrococcus_abyssi UCC----C--UU--CUGG-------------GA-CGCCA-------CC-- Pyrococcus_horikoshii UCC----C--UU--CUGG-------------GA-CGCCA-------CC-- Pyrococcus_furiosus UCC----C--UU--CUGG-------------GA-CGCCA-------CC-- Thermococcus_celer --G----G--CG--CCUU-------------GC-GCGCA-------CC-- Archaeoglobus_fulgidus CUU----C--GG--GGAU-------------GC-AAGCA-------CC-- Nanoarchaeum_equitans UCC----C--CG--GGUA-------------AG-GGGGC-------CC-- Aeropyrum_pernix_(str._K1) CCC----C--GC--CGCU-------------GC-GGGGCG-U-------- Pyrodictium_occultum CCC----C--CG--GACG-------------CG-GGGGC-------GC-- Thermoproteus_tenax --C----G--CC--CGGG-------------GC-GCCGGG-C----GC-- Sulfolobus_acidocaldarius --C----U--CC--CGGG-------------UA-AGGGAG-U----GU-- Sulfolobus_solfataricus --C----U--CC--CGGG-------------UA-AGGGAG-U----GU-- Bacteroides_fragilis --C----U--CC--CGGG-------------CA-AGGGAG-C----GU-- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum -CG----A--UC--CUUC-------------GG-GGUCG-------UG-- Methanococcus_vannielii --C----U--AU--GGUU-------------UC-GGCCA-------UG-- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. --U----G--CG--GGUU-------------UA-GACCC-------GC-- Natronorubrum_bangense -UA----C--GA--GUUU-------------GU-ACUCG-------UA-- Natronobacterium_innermongoliae --U----A--CG--AGUU-------------UA-GACUC-------GU-- Haloferax_volcanii -CA----C--GA--GUUC-------------AU-ACUCG-------UG-- Methanospirillum_hungatei ----------------UG-------------CA-AGACC-------UC-- Picrophilus_torridus_DSM_9790 --A----G--GG--GCCG-------------UA-AGGCA-------CC-- Thermoplasma_acidophilum --U----G--GG--GCCG-------------UA-AGGCA-------CC-- Giardia_ardeae GCG----G--AC--GGCU-------------CA-GUACA-------CC-- Giardia_intestinalis GCG----G--AC--GGCU-------------CA-GGACA-------AC-- Giardia_muris --G----A--CA--CGAG-------------GU-AUGAAG-U----GG-- Amblyospora_bracteata UUG----U--GA--AGGA-------------AG-CGGAA-------CG-- Glomus_sp._W3349 ACU----U--UU--CGAA-U-C-G-U-----AU-GGCCU-------CG-- Scutellospora_cerradensis AUGAU--A--AC--UUUUCG-A-A-UCG---UA-UGGCCU-U----GC-- Glomus_intraradices AUAAU--A--AC--UUUUCG-A-A-U-----CG-UAUGAC-UU---UA-- Smittium_culisetae GUGC---C--GG--CGAAGG-A-U-C-----AU-UCAAAU-U----UC-- Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus UUC----A--UA--AUAACU-UAA-C-----GA-AUCGCA-UG---GC-- Tilletia_caries UCAUA--A--UA--ACUUUU-C-U-A-----AU-CGCAUG-G----CC-- Mucor_circinelloides_f._lusitanicus UCCC---U--UG--GUGAUU-C-A-UAA---UA-AUUUAG-C----GG-- Mucor_racemosus UCCC---U--UG--GUGAUU-C-A-UAA---UA-AUUUAG-C----GG-- Rhizopus_oryzae UUGG---U--GA--AUCA-U-A-A-UA----AU-UAAGCG-G----AU-- Mytilus_edulis UAA----C--UU--UGUGCU-G-A-U-----CG-CACGGC-C----UC-- Placopecten_magellanicus ACUU---U--GU--GCUGAU-C-G-------CA-CGGCCC-U----AG-- Echinococcus_granulosus CUGA---C--CC--UGCUCA-U-G-UU----UG-CCUUGC-UUG--CA-- Drosophila_melanogaster UCAA---A--UG--UCUGCC-C-U-A-----UC-AACUUU-UG---AU-- Crossodonthina_koreana AAC----A--UU--GCUGAU-C-GCA-----CG-GUCUUG-C----AC-- Androctonus_australis ACUU---U--GA--GCUGAU-C-G-CA----CG-GUCUAG-C----AC-- Okanagana_utahensis AUCA---A--CU--GUCGAU-G-G-------UA-GGCUCU-G----CG-- Artemia_salina ACU----A--UA--GCCGAU-C-GCA-----CG-GUCUCG-CA---CC-- Mus_musculus ACCU---C--GG--GCCGAU-C-G-C-----AC-GCCCCC-C----GU-- Rattus_norvegicus AGAU---A--AC--CUCGGG-C-C-GAUCGCAC-GCCCUC-C----GU-- Homo_sapiens AGAU---A--AC--CUCGGG-C-C-GAUCG-CA-CGCCCC-CC---GU-- Oryctolagus_cuniculus AGAU---A--AC--CUCGGG-C-C-GAUCG-CA-GCCCUC-C----GU-- Xenopus_borealis UAGA---U--AA--CCUCGG-G-C-C-----GA-UCGCAC-G----UC-- Xenopus_laevis UAGA---U--AA--CCUCGG-G-C-C-----GA-UCGCAC-G----UC-- Acanthamoeba_castellanii UGCG---C--AA--GGUCCC-G-A-G-----CG-CGGGGG-G----CG-- Balamuthia_mandrillaris CAAA---U--UU--CUGCCC-U-A-U-----CA-ACUUUC-G----AU-- Plasmodium_falciparum UUAUA--A--CA--AAGAAG-U-A-ACAC--GU-AAUAAA-U----UU-- Plasmodium_falciparum UUUUA--A--UA--UAAGGA-U-A-A-----CU-ACGGAA-A----AU-- Plasmodium_vivax UCCA---U--UU--UUAGUG-U-G-UAU---CA-AUCGAG-UU---UC-- Plasmodium_vivax UUUUUC-C--CA--UAAGGA-U-G-A-----UU-ACGGAA-A----AG-- Plasmodium_vivax CCUA---U--CA--GCUUUU-G-A-U-----GU-UAGGGU-A----UU-- Entamoeba_histolytica AAA----A--UA--CAAGGAUA-G-C-----UU-UGUGAA-U----GA-- Ichthyophonus_hoferi GAUUC--A--UA--AUAACU-UCG-CG----AA-UCGAAU-GG---CU-- Dermocystidium_sp. UAAU---A--AC--UUUGCG-A-A-U-----CG-UAUGGC-U----UC-- Sphaerothecum_destruens UCAU---A--AU--AACUUU-G-C-G-----AA-UCGUAU-GA---CA-- Acanthocoepsis_unguiculata UAAU---A--AC--UUCUCG-A-A-U-----CG-UUGAG-------CU-- Diaphanoeca_grandis UAAU---A--AC--UUGGCG-A-A-------UC-GCAUGG-U----CU-- Allomyces_macrogynus AAC----U--UU--GCGGAC-C-G-C-----AU-GGCCC--U----GC-- Blastocladiella_emersonii CUAA---C--UU--UGCGGA-U-C-GCAU--AG-CCUUUG-U----GC-- Candida_albicans UGA----U--AG--UACC-U-U-A-C-----UA-CUUGGA-U----AA-- Saccharomyces_cerevisiae UCAU---A--AU--AACUUU-U-C-GA----AU-CGCAUG-G----CC-- Neurospora_crassa UCAU---A--AU--AACUUC-U-C-GA----AU-CGCAUG-G----CC-- Podospora_anserina UCAU---A--AU--AACCUC-U-C-GA----AU-CGCACG-G----CC-- Coccidioides_immitis UCAUA--A--UA--ACUUGU-C-G-A-----AU-CGCAUG-G----CC-- Leishmania_major GAAA---C--GC--CAAGCU-A-A-U-----AC-AUGAA-------CC-- Trypanosoma_cruzi GAAA---C--GC--CAAGCU-A-A-U-----AC-AUGAA--C----CA-- Trypanosoma_brucei CACU---U--CU--ACGGAG-G-G-C-----AG-CAGGCG-C----GC-- Pneumocystis_carinii UUC----A--UG--AUAACU-U-C-GC----GG-AUCGCA-UG---GC-- Cryptococcus_neoformans_var._neoformans UCAUA--A--UA--ACUUCU-C-G-A-----AU-CGCAUG-G----CC-- fungal_contaminant_of_QPX_isolate UCAU---A--AU--AACUUC-U-C-G-----AA-UCGCAU-G----GC-- Ustilago_maydis CAUA---A--UA--ACUUCU-C-G-A-----AU-CGCACG-G----CC-- Mnemiopsis_leidyi UCGG---U--GA--UUCA-U-A-A-U-----AA---CUGU-U----CG-- Tripedalia_cystophora AUGAU--A--AC--UUCUCG-A-A-U-----CG-CACGGG-CUU--GU-- Microciona_prolifera UGAUU--C--AU--GGUAAC-U-U-U-----UC-GAACCG-C----AU-- Psorospermium_haeckeli UCA----U--AA--UAACUG-G-C-A-----AA-AUCGCA-U----GC-- Euglypha_rotunda AAU----A--AC--UGAUCG-A-A-U-----CG-CAUGGC-C----UC-- Paulinella_chromatophora AAU----A--AC--UUUUCG-G-A-U-----CG-CACGGC-C----UC-- Antirrhinum_majus AACU---U--GA--CGGAUC-G-C-A-----CG-GCCUU--C----GU-- Sesamum_indicum UCAUG--A--UA--ACUCGA-C-G-GAU---CG-CACGGC-C----CU-- Digitalis_grandiflora AUGA---U--AA--CUCGAC-G-G-A-----UC-GCAAGG-CCCUCGU-- Plantago_lanceolata AACU---C--GA--CGGAUC-G-C-A-----CG-GCCUU--C----GU-- Nicotiana_tabacum UCAUG--A--UA--ACUCGA-C-G-GA----UC-GCACGG-CCA--UC-- Arabidopsis_thaliana UCAUG--A--UA--ACUCGA-C-G-GA----UC-GCAUGG-CCU--CU-- Sinapis_alba AUGA---U--AA--CUCGAC-G-G-A-----UC-GCAUGG-CCU--UU-- Solanum_tuberosum AACU---C--GA--CGGAUC-G-C-A-----CG-GCCAU--C----GU-- Fragaria_x_ananassa AUGA---U--AA--CUCGAC-G-G-A-----UC-GCACAG-CCU--UU-- Glycine_max AUGA---U--AA--CUCGUC-G-G-A-----UC-GCACGG-CCU--UU-- Oryza_sativa AUGA---U--AA--CUCGAC-G-G-A-----UC-GCACGG-CCCUCGU-- Zea_mays AUGA---U--AA--CUUGAC-G-G-A-----UC-GCACGG-CCUUCGU-- F -------------------------------------------------- Genicularia_spirotaenia UAAU---A--AC--UCCACG-A-A-U-----CG-CACAGC-CUU--GC-- F -------------------------------------------------- Cyanophora_paradoxa UCAU---A--AU--AACUUC-U-C-G-----AA-UCGCAU-G----GC-- Glaucocystis_nostochinearum UCAUA--A--UA--ACUUCU-C-G-A-----AU-CGCAUG-GC---UU-- Gloeochaete_wittrockiana GAUUCA-U--GA--UAACUU-G-U-CG----GA-UGCAUG-GCUU-UA-- FChlorella'_luteoviridis AAC----U--CG--ACGAAU-C-G-U-----AC-GGCCU-------CG-- Oxytricha_longa CAUA---A--UA--ACUGAU-C-G-A-----AU-CGCAUG-G----GC-- Paraurostyla_weissei CAUA---A--UA--ACUGAU-C-G-A-----AU-CGCAUG-G----GC-- Cyrtohymena_citrina CAUA---A--UA--ACUGAU-C-G-A-----AU-CGCAUG-G----GC-- Gastrostyla_steinii CAUA---A--UA--ACUGAU-C-G-A-----AU-CGCAUG-G----GC-- Pleurotricha_lanceolota CAUA---A--UA--ACUGAU-C-G-A-----AU-CGCUUC-G----GC-- Onychodromus_quadricornutus CAUA---A--UA--ACUGAU-C-G-A-----AU-CGCAUG-G----GC-- Stylonychia_lemnae CAUA---A--UA--ACUGAU-C-G-A-----AU-CGCAUG-G----GC-- Stylonychia_mytilus CAUA---A--UA--ACUGAU-C-G-A-----AU-CGCAUG-G----GC-- Engelmanniella_mobilis CAUA---A--UA--ACUGAU-C-G-A-----AU-CGCAUG-G----AC-- Oxytricha_granulifera CAUA---A--UA--ACUGAU-C-G-A-----AU-CGCAUG-G----AC-- Oxytricha_granulifera CAUA---A--UA--ACUGAU-C-G-A-----AU-CGCAUG-G----AC-- Uroleptus_gallina CAUA---A--UA--ACUGAU-C-G-A-----AU-CGCAUG-G----AC-- Uroleptus_pisces CAUA---A--UA--ACUGAU-C-G-A-----AU-CGCAUG-G----AC-- Paruroleptus_lepisma CAUA---A--UA--ACUGAU-C-G-A-----AU-CGCAUG-G----AC-- Urostyla_grandis CAUA---A--UA--ACUGAU-C-G-A-----AU-CGCAUA-G----UC-- Balantidium_coli UUAU---U--UG--AUACAU-U-A-A-----AU-GGAUAA------CU-- Euplotes_aediculatus CUUC---C--CA--UCAGCU-U-G-A-----UG-GUAGUG-U----AU-- Tetrahymena_thermophila GAAUC--A--AA--GUAACU-G-A-UC----GG-AUCGAG-G----UU-- Bangia_sp._(Northwest_Territories/NWT) GAUU---C--AC--AAUAAC-U-U-G-----UC-GGAUCG-C----AU-- Bangia_sp._(Virgin_Islands/VIS7) UAG----U--AA--CUAAGC-G-A-A-----UC-GUAUGG-CC---UU-- Erythrotrichia_carnea AUCAC--G--GU--AACUUC-U-G-G-----AU-CGCAUG-G----CC-- Rhodochaete_parvula CGGU---A--AC--UUUU-U-G-A-U-----CG-CAUGGC-U----UU-- Compsopogon_coeruleus AUGG---U--AA--CUUUUC-G-G-A-----UC-GCAUGG-CG---UC-- Porphyridium_aerugineum AUAA---U--AA--CUUUUC-G-G-------AU-CGC-AG-C----AA-- Rhodella_maculata UAGU---A--AC--UUUUCG-G-A-U-----CG-CAUGGC-U----UC-- Aulacoseira_ambigua GAGUC--A--UG--AUAAGC-A-U-GCG---GA-UCGCAG-G----GC-- Aulacoseira_baicalensis GAGUC--A--UG--AUAAGC-A-U-GCGG--AU-CGCACG------GC-- Stephanopyxis_nipponica AAUC---A--UG--AUAAGU-U-U-GC----GG-AUCGCA-UGGCUCC-- Coscinodiscus_radiatus GUGA---U--UC--AUGAUA-A-G-UUA---GU-GGAUUG-U----AU-- Corethron_criophilum AUAA---U--AA--CUUU-U-C-G-G-----AC-CGCAUG-A----CC-- Amphora_cf._capitellata AUC----A--UA--AUAA-----G-C-----UU-GCGGAG-G----CC-- Sellaphora_pupula_f._capitata CAU----G--AU--AAGCUU-G-C-GG----AU-CGCAUG-G----CA-- Thalassiosira_antarctica CAU----A--AU--AAGCUU-G-C-G-----GA-UCGCAU-G----CC-- Encyonema_triangulatum UCA----U--AA--UAAGUU-G-C-GA----AU-CGCACG-G----CC-- Achnanthes_bongranii CAU----A--AU--AAGUUU-A-C-G-----AA-UCGCAU-G----CC-- F -------------------------------------------------- Diatoma_tenue CAU----A--AU--AAAUUU-G-C-G-----AA-UCGCAU-G----GC-- Grammatophora_marina AUUC---A--UA--AUAAUC-U-U-GCG---AA-UCGCAU-G----GC-- Thalassionema_sp._p474 AUAA---U--AA--CCUUGU-GAA-UC----GC-ACAGCG-U----CA-- Rhaphoneis_belgicae CAU----A--AU--AACUUU-G-C-G-----AA-UUGCAU-G----GC-- Undatella_sp._p446 CAUA---A--UA--AUGUUU-G-C-GG----AU-CGCAUG-G----CU-- Cymatosira_belgica AUGA---U--AA--CUCU-G-C-G-A-----AU-CGCAUG-G----CC-- Odontella_sinensis AUUC---A--UA--AUAACU-U-U-GC----GA-AUCGCA-U----GC-- Ditylum_brightwellii AUUC---A--UA--AUAACU-C-U-GCG---AA-UGCACU-G----GC-- Lithodesmium_undulatum AUUC---A--UA--AUAACU-C-U-GCG---AA-UCGCAU-G----GC-- Thalassiosira_eccentrica UUCA---U--AA--UAACUU-U-U-C-----GA-AUCGCA-UG---GC-- Thalassiosira_pseudonana GAUU---C--AU--AAUAAC-U-U-------AU-CGGAUC-GC---AU-- Skeletonema_costatum GUCA---U--AA--UAACCU-U-U-CG----AA-UUGCAU-GCAC-AU-- Pleurosira_cf._laevis CACA---A--UA--ACCUUG-C-G-A-----AU-CGCAUG-G----CC-- Lauderia_borealis AUUC---A--UA--AUAACU-U-U-GCG---AA-UCGCAU-GGC--UC-- F -------------------------------------------------- Bolidomonas_mediterranea UAA----U--AA--CUUUGC-G-G-A-----UC-GCAUGG-C----CU-- Bolidomonas_pacifica AAC----U--UU--GCGGAU-C-G-C-----AU-GGC--C-U----CG-- Labyrinthuloides_minuta GAGUCA-U--AA--UAACUA-A-G-CGA---AU-CGCAGU-G----GC-- Leptocylindrus_danicus UCAUA--A--UA--ACUUUU-C-G-AA----UC-GCAUCG-AC---UU-- Chaetoceros_sp. GGUG---A--UU--CAUAAU-A-A-CU----UU-UCGGAU-U----GC-- Aphanomyces_invadans GAAU---C--AU--AAUAAC-U-G--------U-GCUGA-------UC-- Lagenidium_giganteum GUGU---U--GA--GUCAUA-A-U-A-----AC-UGUGCG-G----AC-- Melosira_varians AUU----C--AU--GAUAUU-G-G-A-----AU-GGAUCA-U----AC-- Blastocystis_hominis GUAA---C--CU--AUCGUA-U-C-G-----CA-UGCUU-------AA-- Perkinsus_marinus GAUUCAUA--AU--AACCCG-G-C-GA----AU-CGCACG-G----CU-- Toxoplasma_gondii GAUU---C--AU--AGUAAC-C-G-AAC---GG-AUCGCG-UUG--AC-- Alexandrium_fundyense GAUUC--A--CA--AUGACA-A-A-U-----GA-AUUACA-UG---GC-- Babesia_bigemina UCA----U--UA--CAAC-A-G-U-U-----AU-AGUUUC-U----UU-- Babesia_canis CAUA---A--UA--AACUUG-C-G-A-----AU-CGCUUU-U----AG-- Babesia_sp._'Oklahoma_dog' UUCG---G--UG--AUUCAUAA-U-A-----AA-CUCGCG-A----AU-- Babesia_microti AAU----A--AA--UUAG-C-G-A-------AU-CGCAUG-G----CU-- Babesia_microti AAU----A--AA--UUAG-C-G-A-------AU-CGCAUG-G----CU-- Babesia_microti AAU----A--AA--UUAG-C-G-A-------AU-CGCAUG-G----CU-- Babesia_microti AAU----A--AA--UUAG-C-G-A-------AU-CGCAUG-G----CU-- Babesia_microti AAU----A--AA--UUAG-C-G-A-------AU-CGCAUG-G----CU-- Babesia_rodhaini CAUA---A--UA--AAUUAG-C-G-A-----AU-CGCAUG-G----CU-- Babesia_gibsoni UCAU---A--AU--AAACAG-C-G-A-----AU-CGCAUG-G----CU-- Babesia_bovis GUUA---U--AG--UUUCUU-U-G-------GA-GUUCAC-U----UU-- Jakoba_libera CAUA---G--UA--ACCGAG-C-G-A-----AU-CGCAUG-GCC--CC-- Reclinomonas_americana UCAU---A--GU--AACCUU-G-C-GAA---CC-GCUCAA-G----CG-- Bonamia_ostreae AAUAAU-A--AU--AUUUGU-C-G-G-----AU-CGCGUU-G----GC-- Audouinella_dasyae CAUG---A--UU--UUUUUUCU-G-------AU-CGCUCG-U----AA-- Audouinella_hermannii UUU----U--UU--UCUGAU-C-G-------CA-CGCAAG-U----GC-- Nemalion_helminthoides UUU----U--UU--UCUGAU-C-G-C-----AC-UCUGU-------GC-- Batrachospermum_gelatinosum UUU----U--UU--UCUGAU-C-G-------CA-CGCAAG-U----GC-- Nemalionopsis_tortuosa UGU----U--UU--UCUGAU-C-G-------CA-CGCAAG-U----GC-- Thorea_hispida GUU----U--UU--CUGA-U-C-G-C-----GC-GAAAUU-G----AU-- Thorea_violacea GUU----U--UU--CUGA-U-C-G-C-----GC-GAAAUU-G----AU-- Thorea_violacea AUAUGG-U--GA--UUCAUG-A-U-U-----GU-UUUUCU-G----AU-- Thorea_violacea AUAUGG-U--GA--UUCAUG-A-U-U-----GU-UUUUCU-G----AU-- Nemalionopsis_shawii UGU----U--UU--UCUGAU-C-G-------CA-CGCAAG-U----GC-- Balbiania_investiens UUU----U--UU--UCUGAU-C-G-------AA-CGCAAG-U----UC-- Batrachospermum_macrosporum UAU----U--UU--UCGGAU-C-G-------CA----CUG-U----AU-- Ahnfeltia_plicata CAUA---A--CU--UUUUUU-C-U-GA----UC-GCGCCU-U----GU-- Corallina_officinalis CAUA---A--UC--GUCUUU-C-G-G-----AU-CGCUGG------CG-- Rhodogorgon_carriebowensis CAUA---A--UU--UUCUUUCU-G-A-----UC-GCUGCA-U----GC-- Bonnemaisonia_hamifera AUUC---A--CA--AUUUAU-U-U-U-----CU-GAUCGC-A----CU-- Gelidium_vagum UGGUG--A--UU--CACGAU-U-U-C-----UU-UUCUGA-U----CG-- Chondrus_crispus UUC----U--UU--UCUGAU-C-G-------CA-CGUUAG-U----GC-- Halymenia_plana UGGUG--A--UU--CACGAU-U-U-C-----UU-UUCUGA-U----UG-- Rhodymenia_leptophylla UUC----U--UU--UCUGAU-U-G-------CA-CUUUCG-U----GC-- Plocamiocolax_pulvinata UUC----U--UU--UCUGAU-U-G-------CA-AUCAUG-U----UU-- Ceramium_rubrum CACA---C--UU--AUUUUUCU-G-A-----UU-GCACAU-U----UU-- Gracilariopsis_sp. UUU----U--UU--UCUGAU-C-G-------CA-CAUUG-------UU-- Bostrychia_moritziana ACAACC-C--AG--UUUUUA-C-U-G-----GU-GAUUCA-U----AC-- Hildenbrandia_rubra CACA---A--UU--UUUUUU-C-U-G-----AU-UGCACU-U----UU-- Dixonielloa_grisea UGA----C--AA--CUUUAC-G-G-------AU-CGCAUG-C----AA-- Naegleria_fowleri AAAGG--A--CA--AACAAG-G-C-U-----UU-GACGGG-U----AC-- Naegleria_gruberi AAAGG--A--CA--AACCAG-G-C-U-----UU-GACGGG-U----AC-- Hexamita_sp. UUA----U--UC--GUAG-------------UC-GGCUA-------AU-- Tritrichomonas_foetus CAGU---G--GA--AAAGUU-G-A-C-----CC-UCCGGG-C----AC-- Amblyospora_khaliulini --A----A--UC--UUUA-------------UA-GAGAA-------AC-- Edhazardia_aedis UCU----G--UG--AAUA-------------UA-UGAAA-------CA-- Amblyospora_connecticus --A----U--AU--UAUA-------------UA-UGAAA-------CA-- Intrapredatorus_barri UCU----G--UG--AAUG-------------UC-UGAAA-------CA-- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. --G----U--UU--CUUA-------------UA-UGAAA-------CA-- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii --C----G--AA--GCGU-------------AA-GUGGA-------GC-- Weiseria_palustris --C----G--AA--GCUU-------------CG-GUGGA-------GC-- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani -AA----G--CC--GUUA-------------GG-UGGAA-------CA-- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae UCG----A--AC--CCUC-------------GU-GGGGA-------GA-- Thelohania_solenopsae -CG----A--AC--CCAC-------------GU-GGGGA-------GU-- Visvesvaria_acridophagus --A----A--UU--CACA-------------AG-AAGAA-------GU-- Bacillidium_sp. -UG----U--GA--AGCA-------------AC-AGACAG-C----UC-- Pseudonosema_cristatellae --A----A--GC--CUUA-------------UG-GUGGA-------GC-- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum -CG----A--AG--CAUU-------------UU-GUGGA-------GC-- Pleistophora_mirandellae -CG----A--AG--CAUU-------------UU-GUGGA-------GC-- Trachipleistophora_hominis -CG----A--AG--CCGG-------------UG-GUGGG-------GC-- Vavraia_culicis --G----A--AG--CCGG-------------UG-GUGGAG-C----GG-- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii -CG----A--AG--CGAU-------------UA-GUGAA-------GC-- F -------------------------------------------------- Dictyocoela_gammarellum -CG----A--AG--CAUA-------------UU-GUGGA-------GC-- Microsporidium_prosopium --A----A--GC--UUUU-------------AG-UGGAG-------CU-- Antonospora_scoticae -----------------G-------------AA-GCGGAG-C----GG-- Paranosema_whitei --G----C--GA--AGCA-------------GC-GCGGA-------GC-- #=GC SS_cons ...>..............>>.>.>.>.............>.>........ Cynomorium_coccineum -G-G---C----------GCACGG----G--U-G------CAUAAC---- Cytinus_ruber -G-G---C----------GAACGG----G--U-G------AGUAAC---- Nicotiana_tabacum -G-G---C----------GGACGG----G--U-G------AGUAAC---- Spinacia_oleracea -G-G---C----------GGACGG----G--U-G------AGUAAC---- Zea_mays -G-G---C----------GAACGG----G--U-G------AGUAAC---- Marchantia_polymorpha -G-G---C----------GGACGG----G--U-G------AGUAAC---- Ricinus_communis -G-G---C----------GGACGG----G--U-G------AGUAAC---- F -G-G---C----------GGACGG----G--U-G------AGUAAC---- Prototheca_wickerhamii -A-G---C----------GGACGG----G--U-G------AGUAAC---- Pedinomonas_minor -G-G---C----------GGACGG----G--U-G------AGGAAC---- Nephroselmis_olivacea -G-G---C----------GAACGG----G--U-G------AGGAAC---- Pyramimonas_parkeae -G-G---C----------GGACGG----G--U-G------AGUAAC---- Chlamydomonas_reinhardtii -G-G---C----------GAACGG----G--U-G------CGUAAC---- Acanthamoeba_castellanii -G-G---U----------GACCUG----G--U-G------AGUAGU---- Pilostyles_thurberi -------U----------UAUUUG----G--U-G--------UUUU---- Chondrus_crispus ------------------GAACGG----G--U-G------AGUAAU---- Toxoplasma_gondii -A-G---U----------GUAAUA----G--U-G------AGUAAU---- Neurospora_crassa -G-G---U----------GUACAG----G--U-G------AGUAUAAUA- Podospora_anserina AG-G---U--------UUAAAUUUAGG-G--U-UU-----AUUCUCC--- Penicillium_chrysogenum -G-G---U----------GUACAG----G--U-G------AGUAAAA--- Emericella_nidulans -G-G---U----------GUACAG----G--U-G------AGUAAAA--- Saccharomyces_cerevisiae -G-G---U----------GUAAAC----G--U-G------AGUAAUU--- Williopsis_saturnus_var._mrakii -A-A---U--------U-CAAAUA----A--U--------AAUAAUU--- Pedinomonas_minor -G-U--------------GUACGG----G--U-G-----------AG--- Plasmodium_falciparum -A-G---U----------GUAUAG----G--U-G------AGGAUAU--- Babesia_bovis ---G---U----------GUAGAG----G--U-G------AGUAAUG--- Tetrahymena_pyriformis -A-A---U--------ACAUAAAU----A--U-GCC----UUUAAGCCU- Suillus_sinuspaulianus -U-U---U--------U-CAUUAA----U--U-GC-----AAAAAUUUA- Paramecium_tetraurelia -A-G---C----------GUAUUG----G--U-GC-----GUAAAAUAU- Dictyostelium_discoideum ----------------C-AAAAAG----G--U-G------AGUAAU--G- Physarum_polycephalum -G-U---C--------U-GAGAGG----A--U-GU-----ACAGCCGCG- Pylaiella_littoralis ----------------C-GUACGG----G--U-G------AGUAAUAGA- Prototheca_wickerhamii ----------------C-GAACGG----G--U-G------AGUAAC--G- Hydnora_africana ----------------C-GAACGG----G--U-G------CGUAAUUAC- Codium_fragile -G-G---C----------GAACGG----G--U-G------AGUAAC--G- Caulerpa_sertularioides ----------------C-GAACGG----G--U-G------AGUAUCACC- F -G-G---C----------GGACGG----G--U-G------CGUAACA--- F -G-A---U--------U-AAUUAA----A--U-AU-----AAGAGUUUA- Glaucocystis_nostochinearum -G-G---C----------GGACGG----G--U-G------AGUAAC--G- Gloeochaete_wittrockiana -G-G---C----------GAACGG----G--U-G------AGUAAC--G- Cyanophora_paradoxa -G-G---C----------GGACGG----G--U-G------AGUAAC--G- Cyanophora_paradoxa -G-G---C----------GGACGG----G--U-G------AGUAAC--G- Cryptomonas_sp. -G-G---C----------GGACGG----G--U-G------AGUAACA--- Palmaria_palmata -G-G---C----------GGACGG----G--U-G------AGUAACA--- Heterosigma_akashiwo -G-G---C----------GGACGG----G--U-G------AGUAACA--- Skeletonema_pseudocostatum -G-G---C----------GGACGG----G--U-G------AGUAACA--- Pylaiella_littoralis -G-G---C----------GGACGG----G--U-G------AGUAACA--- Cyanidium_caldarium -G-G---C----------GGACGG----G--U-G------AGUAACA--- Emiliania_huxleyi -G-G---C----------GAACGG----G--U-G------AGUAAUA--- Euglena_gracilis ----------------C-GGACGG----G--U-G------AGUAAUAUG- Anabaena_sp. -G-G---C----------GGACGG----G--U-G------AGUAAC--G- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -G-G---C----------GGACGG----G--U-G------AGUAAC--G- F -------------------------------------------------- Oscillatoria_agardhii -G-G---C----------GGACGG----G--U-G------AGUAACA--- Pleurocapsa_sp. -G-G---C----------GGACGG----G--U-G------AGUAAC--G- Microcystis_aeruginosa -G-G---C----------GGACGG----G--U-G------AGUAAC--G- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos ---G---C----------GUACGG----G--U-G---------AGUAGA- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae -G-G---U--------C-GAACGG----G--U-G------AGUAACGCG- Streptococcus_pyogenes -G-G---U--------C-GAACGG----G--U-G------AGUCAC--G- Bacillus_anthracis -G-G---C----------GGACGG----G--U-G------AGUAACA--- Bacillus_cereus -G-G---C----------GGACGG----G--U-G------AGUAACA--- Enterococcus_faecalis -G-G---C----------GGACGG----G--U-G------AGUAACA--- Enterococcus_faecium -G-G---C----------GAACGG----G--U-G------AGUAACA--- Listeria_monocytogenes -G-G---C----------GGACGG----G--U-G------AGUAACACG- Bacillus_subtilis -G-G---C----------GGACGG----G--U-G------AGUAACA--- Bacillus_subtilis_A -G-G---C----------GGACGG----G--U-G------AGUAACA--- Bacillus_halodurans -G-G---C----------GAACGG----G--U-G------AGUAACA--- Staphylococcus_aureus -G-G---C----------GGACGG----G--U-G------AGUAACA--- Staphylococcus_aureus_N315 -G-G---C----------GGACGG----G--U-G------AGUAACA--- Lactococcus_lactis_subsp._lactis -------C----------GAACGG----G--U-G------AGUAAC--G- Streptococcus_pyogenes -------C----------GAACGG----G--U-G------AGUAAC--G- Lactobacillus_acidophilus -G-G---C----------GGAUGG----G--U-G------AGUAACA--- Mycoplasma_capricolum -G-G---C----------GAACGG----G--U-G------AGUAACA--- Mycoplasma_mycoides -G-G---C----------GAACGG----G--U-G------AGUAACA--- Erysipelothrix_rhusiopathiae_(alpha-P15) -G-G---C----------GAACGG----G--U-G------AGUAAUA--- Clostridium_innocuum -G-G---C----------GAACGG----G--U-G------AGUAACA--- Mycoplasma_genitalium -G-G---C----------GAACGG----G--U-G------AGUAACA--- Mycoplasma_pneumoniae -G-G---C----------GAACGG----G--U-G------AGUAACA--- Mycoplasma_pneumoniae -G-G---C----------GAACGG----G--U-G------AGUAACA--- Mycoplasma_gallisepticum -G-G---C----------GAACGG----G--U-G------AGUAACA--- Ureaplasma_urealyticum -G-G---U----------GAACGG----G--U-G------AGUAACA--- Ureaplasma_urealyticum -G-G---U----------GAACGG----G--U-G------AGUAACA--- Mycoplasma_hyopneumoniae -------C--------A--AAUGG----G--U-G------AGUAACA--- Fusobacterium_necrophorum -A-G---C------------ACGG----G--U-G------AGUAAC--G- Fusobacterium_nucleatum_subsp._nucleatum -G-G---C----------GGACGG----G--U-G------AGUAAC--G- Streptobacillus_moniliformis ----------------U-GGACUG----G--U-G------AGUAAC--G- Clostridium_botulinum_type_f -G-G---C----------GGACGG----G--U-G------AGUAACA--- Clostridium_tetani -G-G---C----------GGACGG----G--U-G------AGUAACACA- Clostridium_perfringens -G-G---C--------G-GGACGG----G--U-G------AGUAACA--- Clostridium_difficile -A-G---C----GG--C-GGACGG----G--U-G------AGUAAC--G- Eubacterium_brachy -G-G---C----------GGACGG----G--U-G------AGUAAC---- Epulopiscium_sp. -G-G---C----------GGACGG----G--U-G------AGUAACA--- Heliobacterium_chlorum -G-G---C----------GGACGG----G--U-G------AGUAAC--G- Glycine_max -G-G---U--------U-G--CUU----G--U-C------UCGCCCAGG- Oenothera_berteroana ---G---C--------U-UGUCUC----G--C-CC-----AACAUGUUG- Secale_cereale ---U---C--------U-CGCCCU----GC-U-U------CAAAACUAC- Triticum_aestivum ---U---C--------U-CGCCCU----GC-U-U------CAAAACUAC- Zea_mays ---U---C--------U-CGCCCU----GCCU-G------CAGGGCGCG- Marchantia_polymorpha -U-U---C----U---C-UGAGCU----G--C-UC-----AACUUUUAA- Nephroselmis_olivacea -G-G---C--------A--AACGG----G--U-G------AGUAACA--- Gluconacetobacter_liquefaciens -G-G---C----------GGACGG----G--U-G------AGUAAC--G- Bradyrhizobium_japonicum -G-G---C--------A-G-ACGG----G--U-G------AGUAAC--G- Rhodoblastus_acidophilus -G-G---C--------A-G-ACGG----G--U-G------AGGAACA--- Azorhizobium_caulinodans -G-G---C--------A-G-ACGG----G--U-G------AGUAAC--G- Bartonella_quintana -G-G---C--------A--AACGG----G--U-G------AGUAAC--G- Mesorhizobium_loti -G-G---C--------A-G-ACGG----G--U-G------AGUAAC--G- Agrobacterium_tumefaciens -G-G---C--------A-G-ACGG----G--U-G------AGUAAC--G- Bartonella_bacilliformis -G-G---C--------A-G-ACGG----G--U-G------AGUAAC--G- Bartonella_henselae -G-G---C--------A--AACGG----G--U-G------AGUAAC--G- Brucella_melitensis -G-G---C--------A-G-ACGG----G--U-G------AGUAAC--G- Rhodobium_orientis -G-G---C--------A-G-ACGG----G--U-G------AGUAAC--G- F -------------------------------------------------- Rickettsia_bellii -G-G---C--------A-G-ACGG----G--U-G------AGUAACA--- Rickettsia_felis_URRWXCal2 -G-G---C--------A-G-ACGG----G--U-G------AGUAACA--- Rickettsia_prowazekii -G-G---C--------A-G-ACGG----G--U-G------AGUAACA--- Rickettsia_prowazekii_(str._Madrid_E) -G-G---C--------A-G-ACGG----G--U-G------AGUAACA--- Rickettsia_rickettsii -G-G---C--------A-G-ACGG----G--U-G------AGUAACA--- Acinetobacter_calcoaceticus -G-G---C----------GGACGG----G--U-G------AGUAAU--G- Psychrobacter_pacificensis -G-G---C----------GGACGG----G--U-G------AGUAAUA--- Chromohalobacter_marismortui -G-G---C----------GGACGG----G--U-G------AGUAAU--G- F -------------------------------------------------- Pseudomonas_aeruginosa -G-G---C----------GGACGG----G--U-G------AGUAAU--G- Pseudomonas_aeruginosa -G-G---C----------GGACGG----G--U-G------AGUAAU--G- Pseudomonas_sp. -G-G---C----------GGACGG----G--U-G------AGUAAU--G- Pseudomonas_putida -G-G---C----------GGACGG----G--U-G------AGUAAU--G- Coxiella_burnetii -G-G---C----------GGACGG----G--U-G------AGUAAU--G- Methylococcus_capsulatus -G-G---C----------GGACGG----G--U-G------AGUAAU--G- Legionella_pneumophila -G-G---C----------GAACGG----G--U-G------AGUAAC--G- Legionella_pneumophila -G-G---C----------GAACGG----G--U-G------AGUAAC--G- Allochromatium_vinosum -G-G---C----------GGACGG----G--U-G------AGUAAC--G- Beggiatoa_sp._1401-13 -G-G---C----------GGACGG----G--U-G------AGUAAUA--- Aeromonas_hydrophila -G-G---C----------GGACGG----G--U-G------AGUAAU--G- Shewanella_putrefaciens -G-G---C----------GGACGG----G--U-G------AGUAAU--G- Citrobacter_freundii -G-G---C----------GGACGG----G--U-G------AGUAAUGUC- Shigella_dysenteriae -G-G---C----------GGACGG----G--U-G------AGUAAUGUC- Klebsiella_pneumoniae -G-G---C----------GGACGG----G--U-G------AGUAAUGUC- Plesiomonas_shigelloides -G-G---C----------GGACGG----G--U-G------AGUAAU--G- Yersinia_pestis -G-G---C----------GGACGG----G--U-G------AGUAAUGUC- F -------------------------------------------------- Shigella_dysenteriae -G-G---C----------GGACGG----G--U-G------AGUAAUGUC- Escherichia_coli_O157:H7 -G-G---C----------GGACGG----G--U-G------AGUAAUGUC- Escherichia_coli_O157:H7_EDL933 -G-G---C----------GGACGG----G--U-G------AGUAAUGUC- Escherichia_coli -G-G---C----------GGACGG----G--U-G------AGUAAUGUC- Escherichia_coli_K12 -G-G---C----------GGACGG----G--U-G------AGUAAUGUC- Escherichia_coli -G-G---C----------GGACGG----G--U-G------AGUAAUGUC- Escherichia_coli -G-G---C----------GGACGG----G--U-G------AGUAAUGUC- Escherichia_coli -G-G---C----------GGACGG----G--U-G------AGUAAUGUC- Salmonella_typhimurium -G-G---C----------GGACGG----G--U-G------AGUAAUGUC- Serratia_marcescens -G-G---C----------GGACGG----G--U-G------AGUAAUGUC- Edwardsiella_tarda -G-G------------C-GGACGG----G--U-G------AGUAAUGUC- Proteus_vulgaris -G-G---C----------GGACGG----G--U-G------AGUAAUGUA- Vibrio_cholerae -G-G---C----------GGACGG----G--U-G------AGUAAUGCC- Vibrio_cholerae -G-G---C----------GGACGG----G--U-G------AGUAAUGCC- Vibrio_cholerae -G-G---C----------GGACGG----G--U-G------AGUAAUGCC- Vibrio_cholerae -G-G---C----------GGACGG----G--U-G------AGUAAUGCC- Vibrio_cholerae -G-G---C----------GGACGG----G--U-G------AGUAAUGCC- Vibrio_cholerae -G-G---C----------GGACGG----G--U-G------AGUAAUGCC- F -------------------------------------------------- Haemophilus_influenzae -G-G---C----------GGACGG----G--U-G------AGUAAUGCU- Haemophilus_influenzae -G-G---C----------GGACGG----G--U-G------AGUAAUGCU- Haemophilus_influenzae -G-G---C----------GGACGG----G--U-G------AGUAAUGCU- Haemophilus_influenzae -G-G---C----------GGACGG----G--U-G------AGUAAUGCU- Haemophilus_influenzae_(operons_A-F) -G-G---C----------GGACGG----G--U-G------AGUAAUGCU- Pasteurella_multocida -G-G---C----------GGACGG----G--U-G------AGUAAUGCU- Pasteurella_multocida -G-G---C----------GGACGG----G--U-G------AGUAAUGCU- Xanthomonas_albilineans -G-G---C----------GGACGG----G--U-G------AGGAAUACA- Xanthomonas_campestris -G-G---C----------GGACGG----G--U-G------AGGAAUACA- Xylella_fastidiosa -G-G---C----------GGACGG----G--U-G------AGGAAUACA- Dichelobacter_nodosus -G-G---C----------GGACGG----G--U-G------AGUAAUAUA- Francisella_tularensis -G-G---C----------GGACGG----G--U-G------AGUAAC--G- Bordetella_parapertussis -G-G---C----------GAACGG----G--U-G------AGUAAUGUA- Bordetella_pertussis -G-G---C----------GAACGG----G--U-G------AGUAAUGUA- Bordetella_bronchiseptica -G-G---C----------GAACGG----G--U-G------AGUAAUGUA- unidentified_proteobacterium -G-G---C----------GAACGG----G--U-G------AGUAAUA--- Burkholderia_mallei -G-G---C----------GAACGG----G--U-G------AGUAAUA--- Burkholderia_sp. -G-G---C----------GAACGG----G--U-G------AGUAAUA--- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -G-G---C----------GAACGG----G--U-G------AGUAACAUA- Comamonas_testosteroni -G-G---C----------GAACGG----G--U-G------AGUAAUA--- Desulfovibrio_desulfuricans -G-G---C----------GCACGG----G--U-G------AGUAAC--G- Myxococcus_xanthus -G-G---C----------GCACGG----G--U-G------CGUAACA--- Deferribacter_thermophilus -G-G---C----------GGACGG----G--U-G------AGUAAC--G- Borrelia_burgdorferi -G-G---C----------GAACGG----G--U-G------AGUAAC--G- Borrelia_burgdorferi -G-G---C----------GAACGG----G--U-G------AGUAAC--G- Borrelia_hermsii -G-G---C----------GAACGG----G--U-G------AGUAAC--G- Spirochaeta_aurantia -G-G---C----------GAACGG----G--U-G------AGUAACA--- Treponema_pallidum_(rRNA_A) -G-G---C----------GGACUG----G--U-G------AGUAAC--G- Leptonema_illini -G-G---C----------GAACGG----G--U-G------AGUAACA--- Leptospira_interrogans -G-G---C----------GAACGG----G--U-G------AGUAACA--- Chlamydia_trachomatis_D/UW-3/CX -G-G---C--------G-GAA-GG----G--U-U------AGUAAU--G- Chlamydia_trachomatis_L2/434/BU -G-G---C--------G-GAA-GG----G--U-U------AGUAAU--G- Chlamydia_muridarum -G-G---C--------G-GAA-GG----G--U-U------AGUAAU--G- Chlamydophila_pneumoniae_AR39 -G-G---C--------G-GAA-GG----G--U-U------AGUAGUA--- Chlamydophila_pneumoniae -G-G---C--------G-GAA-GG----G--U-U------AGUAGUA--- Chlamydophila_pneumoniae_J138 -G-G---C--------G-GAA-GG----G--U-U------AGUAGUA--- F -------------------------------------------------- Chlamydophila_psittaci -G-G---C--------G-GAA-GG----G--U-U------AGUAAUA--- Deinococcus_radiodurans -G-G---C----------GCACGG----G--U-G------AGUAACA--- Deinococcus_radiodurans -G-G---C----------GCACGG----G--U-G------AGUAACA--- Bacteroides_fragilis -G-G---C----------GCACGG----G--U-G------AGUAACA--- Porphyromonas_gingivalis -G-G---C----------GCACGG----G--U-G------CGUAAC--G- Prosthecochloris_vibrioformis -G-G---C----------GCAAGG----G--U-G------AGUAA--GG- Campylobacter_jejuni -G-G---C----------GCACGG----G--U-G------AGUAA---G- Campylobacter_jejuni -G-G---C----------GCACGG----G--U-G------AGUAA---G- Campylobacter_sputorum -U-A---U--------U-AAUAAA----G--C-G------AAAAAAAAGC F -------------------------------------------------- Helicobacter_pylori_J99 -G-G---C----------GCACGG----G--U-G------AGUAAC--G- Helicobacter_pylori -G-G---C----------GCACGG----G--U-G------AGUAAC--G- Acidobacterium_capsulatum -G-G---C----------GCACGG----G--U-G------AGUAACA--- Holophaga_foetida -G-G---C--------A-G-ACGG----G--U-G------AGUAAC--G- Arthrobacter_globiformis -G-G---C----------GAACGG----G--U-G------AGUAACA--- Micrococcus_luteus -G-G---C----------GAACGG----G--U-G------AGUAACA--- Frankia_sp. -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_bottropensis -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_scabiei -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_neyagawaensis -G-G---C----------GAACGG----G--U-G------AGUAACA--- F -------------------------------------------------- Streptomyces_sp. -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_acidiscabies -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_griseus -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_ornatus -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_subrutilus -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_bikiniensis -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_galbus -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_hygroscopicus -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_lincolnensis -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_coelicolor -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_tendae -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_ambofaciens -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_eurythermus -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_nodosus -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_sampsonii -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_glaucescens -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_pseudogriseolus -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_caelestis -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_bluensis -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_espinosus -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_mashuensis -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_rimosus -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_limosus -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_odorifer -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_felleus -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_albidoflavus -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_gougerotii -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_rutgersensis -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_intermedius -G-G---C----------GAACGG----G--U-G------AGUAACA--- F -------------------------------------------------- Streptomyces_thermoviolaceus -G-G---C----------GAACGG----G--U-G------AGUAACA--- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_megasporus -G-G---C----------GAACGG----G--U-G------AGUAACA--- Streptomyces_thermolineatus -G-G---C----------GAACGG----G--U-G------AGUAACA--- Mycobacterium_tuberculosis -G-G---C----------GAACGG----G--U-G------AGUAACA--- Mycobacterium_tuberculosis -G-G---C----------GAACGG----G--U-G------AGUAACA--- Mycobacterium_avium -G-G---C----------GAACGG----G--U-G------AGUAACA--- Mycobacterium_leprae -G-G---C----------GAACGG----G--U-G------AGUAACA--- Mycobacterium_leprae -G-G---C----------GAACGG----G--U-G------AGUAACA--- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides -G-G---C----------GAACGG----G--U-G------AGUAACA--- Rhodococcus_erythropolis -G-G---C----------GAACGG----G--U-G------AGUAACA--- Corynebacterium_diphtheriae -G-G---C----------GAACGG----G--U-G------AGUAACA--- Actinomyces_israelii -G-G---C----------GAACGG----G--U-G------AGUAACA--- Brachyspira_hyodysenteriae -G-G---C----------GAACUG----G--U-G------AGUAACA--- Geotoga_subterranea -G-G---C----------GAACGG----G--U-G------AGUA--GAA- Petrotoga_miotherma -G-G---C----------GAACGG----G--U-G------AGUAAAAGG- Brevinema_andersonii -G-G---C----------GGACGG----G--U-G------AGUAAC--G- Herpetosiphon_aurantiacus -G-G---C----------GCACGG----C--U-G------AGGAACA--- F -------------------------------------------------- Aquifex_aeolicus -G-G---C--------A--AACGG----G--U-G------AGUAACA--- Aquifex_pyrophilus -G-G---C--------A--AACGG----G--U-G------AGUAACA--- Thermotoga_maritima -G-G---C----------GGACGG----G--U-G------AGUAACA--- Thermotoga_maritima -G-G---C----------GGACGG----G--U-G------AGUAACA--- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -G-G---C----------GGACGG----G--U-G------AGUAAC--G- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -G-G---C----------GGACGG----G--U-G------AGUAAC--G- Thermus_aquaticus -G-G---C----------GGACGG----G--U-G------AGUAAC--G- Thermomicrobium_roseum -G-G---C----------GGACGG----G--U-G------CGUAACA--- Pirellula_marina -G-G---C----------GAAAGG----G--A-G------AGUAACA--- Pirellula_staleyi -G-G---C----------GAAAGG----G--A-G------AGUAAUA--- Planctomycetaceae_Schlesner_670 -G-G---C----------GAAAGG----G--A-G------AGGAA--AA- Gemmata_obscuriglobus -G-G---C----------GUAAGG----G--G-C------AGUAA--GG- Isosphaera_pallida -G-G---C----------GAAAGG----G--U-G------AGUAA---G- Pyrococcus_abyssi -G-G---C----------GGACGG----C--U-C------AGUAACA--- Pyrococcus_horikoshii -G-G---C----------GGACGG----C--U-C------AGUAACA--- Pyrococcus_furiosus -G-G---C----------GGACGG----C--U-C------AGUAACACG- Thermococcus_celer -G-G---C----------GGACGG----C--U-C------AGUAACA--- Archaeoglobus_fulgidus -G-G---C----------GGACGG----C--U-C------AGUAACA--- Nanoarchaeum_equitans -G-C---C----------GCACGG----C--U-G------AGUAACA--- Aeropyrum_pernix_(str._K1) -G-G---C----------GGACGG----C--U-G------AGUAACA--- Pyrodictium_occultum -G-G---C----------GGACGG----C--U-G------AGUAACA--- Thermoproteus_tenax -G-G---C----------GCACGG----C--U-C------AGUAACA--- Sulfolobus_acidocaldarius -G-G---C----------GGACGG----C--U-G------AGUAACA--- Sulfolobus_solfataricus -G-G---C----------GGACGG----C--U-G------AGUAACA--- Bacteroides_fragilis -G-G---C----------GGACGG----C--U-G------AGUAACA--- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum ---G---C----------GUACGG----C--U-C------AGUAACA--- Methanococcus_vannielii ---G---C----------GGACGG----C--U-C------AUUAACA--- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -A-G---C--------G-GAA-AG----C--U-C------AGUAACA--- Natronorubrum_bangense ---G---C--------A-G-AUAG----C--U-C------AGUAACA--- Natronobacterium_innermongoliae -A-G---C--------A-G-AUAG----C--U-C------AGUAACA--- Haloferax_volcanii ---G---C----------GAAAAG----C--U-C------AGUAACA--- Methanospirillum_hungatei -G-G---C----------GUACUG----C--U-C------AGUAACA--- Picrophilus_torridus_DSM_9790 -G-G---C----------GUACCG----C--U-C------AGUAACA--- Thermoplasma_acidophilum -G-G---C----------GAACAG----C--U-C------AGUAACA--- Giardia_ardeae -G-G---U--------U-GCACC-----C--U----------GCGCGGC- Giardia_intestinalis -G-G---U--------U-GCACCC----C----C---------CGCGGC- Giardia_muris ----------------C-GGACGG----C--U-C------GGUACAACG- Amblyospora_bracteata ---G------------C-GUACGG----C--U-C------AGUAGGACG- Glomus_sp._W3349 -U-G------------C-CGACGA-------U-G------AAUCAUUCAA Scutellospora_cerradensis -G-C---U--------G-ACGAUG-------U-A------UCAUUCAAA- Glomus_intraradices -C-G---U--------C-G-ACGA-------U-G------AAUCAUUCAA Smittium_culisetae -U-G---C----CCUAU-CAACUU----U--C-GAU----GGUAGUAUA- Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus -C-U---U--------G-CGCCGGCG--A--U-G------GUUCAUUCAA Tilletia_caries -U-U---G----U---G-CCGGCG----A--U-G------CUUCAUUCAA Mucor_circinelloides_f._lusitanicus -A-U---C--------G-CAUGGCC---U--U-G------UGCUAGCGA- Mucor_racemosus -A-U---C--------G-CAUGGCC---U--U-G------UGCUAGCGA- Rhizopus_oryzae -C-G---C--------A-UGGCCU-------U-G------UGCCGGCGA- Mytilus_edulis -GCG---C----C---G-GCGACG-------U-A------UCUUUCAAA- Placopecten_magellanicus -U-G---C--------C-GGCGAC----G--U-A------UCUUUCAAA- Echinococcus_granulosus -U-G---U----GGGGG-GGAUGG----G--UGC------ACUUAUUAGA Drosophila_melanogaster -G-G---U--------A-GUAUCU----A--G-G------ACUACCAUG- Crossodonthina_koreana -C-G---G--------C-GACGUA-------U---------CUUUCAAG- Androctonus_australis -C-G---G--------C-GACGUA-------U---------CUUUCAAG- Okanagana_utahensis -C-----C--------U-ACCAUG----G--U-U-------GUAACGGG- Artemia_salina -G-G---C--------G-ACGUGU-------C----------UUUCAAA- Mus_musculus -G-G---C----G---G-CGACGA-------C--------CCAUUCGAA- Rattus_norvegicus -G-G---C----G---G-CGACGA-------C--------CCAUUCGAA- Homo_sapiens -G-G---C----G---G-CGACGA-------C--------CCAUUCGAA- Oryctolagus_cuniculus -G-G---C----G---G-CGACGA-------C--------CCAUUCGAA- Xenopus_borealis -C-C---C--------G-UGACGGC---G--A-CG-----AUACAUUCGG Xenopus_laevis -C-C---C--------G-UGACGGC---G--A-CG-----AUACAUUCGG Acanthamoeba_castellanii -G-G---G----C---U-UCACGGC---C--U-CGU----CCUCGCAUG- Balamuthia_mandrillaris -G-G---U--------A-GUCGCC----G--U-G------CCUACCAUG- Plasmodium_falciparum -A-U---U--------U-UAUUUA----G--U-G------UGUAUCAAUC Plasmodium_falciparum -C-U---G----UA--G-CUAAUA----C--U-UGU----GAAAAUACC- Plasmodium_vivax -U-G---A--------C-CUAUCAGCUUU--U-G------AUGUUAGGG- Plasmodium_vivax -C-U---G----UA--G-CCAAUA----U--U--------UGGCAUAGCA Plasmodium_vivax -G-G---C--------C-UAACAUU---G--C-U-------AUGACGGG- Entamoeba_histolytica -U-A---A--------A-GAUAAUA---C--U-U------GAGACGAUC- Ichthyophonus_hoferi -U-G---U----G---C-CGUCGA-------U-G------AUUCAUUCAA Dermocystidium_sp. -G-U---G--------C-CGACGA-------U-G------AUUCAUUCAA Sphaerothecum_destruens -U-U---U----UG--U-CGACGA-------U-G------AUUCAUUCAA Acanthocoepsis_unguiculata -U-G---U----C---U-CGUCGA-------U-G------AAUCAUUCAA Diaphanoeca_grandis -U-G---U----G---C-CGGCGA-------U-G------AAUCAUUCAA Allomyces_macrogynus -C-G---G--------C-GGCGGG-------U---------CAUUCAAA- Blastocladiella_emersonii -U-G---G--------C-GACGGG-------U---------CAUUCAAA- Candida_albicans -C-C---G--------U-GG-UAA----U--U-CU-----AGAGCUAAU- Saccharomyces_cerevisiae -U-U---G----U---G-CUGGCG----A--U-G------GUUCAUUCAA Neurospora_crassa -U-U---G----CG--C-UGGCGA-------U-G------GUUCAUUCAA Podospora_anserina -U-U---G----CG--C-CGGCGA-------U-G------GUUCAUUCAA Coccidioides_immitis -U-UG--C----G---C-UGGCGA-------U-G------GUUCAUUCAA Leishmania_major -A-A---C--------C-GGGUGUU---C--U-C------CACUCCAGA- Trypanosoma_cruzi -A-C---C--------G-GAUGUU----C--U-C------UGUUCCGGC- Trypanosoma_brucei -A-A---A--------U-UGCCCA----A--U-G------UCGAAAAAA- Pneumocystis_carinii -C-U---U----GUG-C-UGGCGA-------U-G------AUUCAUUCAA Cryptococcus_neoformans_var._neoformans -U-U---G----UG--C-CGGCGA-------U-G------CUUCAUUCAA fungal_contaminant_of_QPX_isolate -C-U---U--------G-CGCCGGCG--A--U-G------CUUCAUUCAA Ustilago_maydis -U-U---G----UG--C-UGGCGA-------U-G------CUUCAUUCAA Mnemiopsis_leidyi -A-A---U--------C-GCAUG-----G--C--------CCUCGUGCC- Tripedalia_cystophora -A-C---C--------G-GCGAUG-------U-U------UCAUUCAAA- Microciona_prolifera -G-G---C----CCU-C-GAGCCGGCG-G--U-G------CUUCAUUCAA Psorospermium_haeckeli -U-U---U----CAA-G-CGACGA-------U-G------AUUCACUCAA Euglypha_rotunda -G-U---G--------C-UGGCGA-------U-A------GUUCAUUCAA Paulinella_chromatophora -GCG---C--------U-GGCGACA---G--U-U-------CAUUCAAA- Antirrhinum_majus -G-C---C--------G-GCGACG-------C-A------UCAUUCAAA- Sesamum_indicum -C-GUGCC--------G-GCGACG-------C-A------UCAUUCAAA- Digitalis_grandiflora -G-C---C--------G-GCGACA-------C-A------UCAUUCAAA- Plantago_lanceolata -G-C---C--------G-GCGACG-------C-A------UCAUUCAAA- Nicotiana_tabacum -GUG---C----C---G-GCGACG-------C-A------UCAUUCAAA- Arabidopsis_thaliana -GUG---C----U---G-GCGACG-------C-A------UCAUUCAAA- Sinapis_alba -GUG---C----U---G-GCGACG-------C-A------UCAUUCAAA- Solanum_tuberosum -G-C---C--------G-GCGACG-------C-A------UCAUUCAAA- Fragaria_x_ananassa -GUG---C----U---G-GCGACG-------C-A------UCAUUCAAA- Glycine_max -GUG---C----C---G-GCGACG-------C-A------UCAUUCAAA- Oryza_sativa -G-C---C--------G-GCGACG-------C-A------UCAUUCAAA- Zea_mays -G-C---C--------G-GCGACG-------C-A------UCAUUCAAA- F -------------------------------------------------- Genicularia_spirotaenia -G-C---U--------G-GCGAUG-------U-A------CCAUUCAAA- F -------------------------------------------------- Cyanophora_paradoxa -U-U---U--------A-CGCCGGCG--A--U-G------CUUCAUUCAA Glaucocystis_nostochinearum -C-A---U----G---C-CGGCGA-------U-G------CUUCAUUCAA Gloeochaete_wittrockiana -U-G---C----CG--G-CGACGC-------U--------UCAUUCAAA- FChlorella'_luteoviridis -A-G---C--------C-G-ACGA-------U-G------UUUCAUUCAA Oxytricha_longa -U-U---U----G---C-CCGCGA-------U-A------AAUCAUUCAA Paraurostyla_weissei -U-U---U----G---C-CCGCGAU---A--C--------AUCAUUCAAG Cyrtohymena_citrina -U-U---U----G---C-CCGCGAU---A--C--------AUCAUUCAAG Gastrostyla_steinii -U-U---U----G---C-CCGCGAU---A--C--------AUCAUUCAAG Pleurotricha_lanceolota -U-U---U----G---C-CAGCGAU---A--C--------AUCAUUCAAG Onychodromus_quadricornutus -U-U---U----G---C-UCGCGAU---A--C--------AUCAUUCAAG Stylonychia_lemnae -U-U---U----G---C-CCGCGAU---A--C--------AUCAUUCAAG Stylonychia_mytilus -U-U---U----G---C-CCGCGAU---A--C--------AUCAUUCAAG Engelmanniella_mobilis -U-U---UGU--C---C-GCGAUA-------C--------AUCAUUCAAG Oxytricha_granulifera -U-U---UGU--C---C-GCGAUA-------C--------AUCAUUCAAG Oxytricha_granulifera -U-U---U----G---U-CCGCGAU---A--C--------AUCAUUCAAG Uroleptus_gallina -U-U---U----G---U-CCGCGAU---A--C--------AUCAUUCAAG Uroleptus_pisces -U-U---U----G---U-CCGCGA-------U-A------CAUCAUUCAA Paruroleptus_lepisma -U-U---U----G---U-CCGCGA-------U-A------AAUCAUUCAA Urostyla_grandis -U-U---U----G---G-CUGCGA-------U-A------CAUCAUUCAA Balantidium_coli ---G--------U---A-GAAAAA----C--U--------AGAGCUAAUA Euplotes_aediculatus -U-G---G----A---C--AACCA-------U-G------GCAUUCACGG Tetrahymena_thermophila -U-A---C----C---U-CGAUAA----------------AUCAUCUAAG Bangia_sp._(Northwest_Territories/NWT) -G-G--------C---C-UCGUGC-------U-GGCGACCCCUCAUUCAA Bangia_sp._(Virgin_Islands/VIS7) -U-G---C----G---C-UGACGA-------U-G------AAUCAUUCAA Erythrotrichia_carnea -U-U---GC---G---C-CGGCGA----C--A-G------AUCAUUCAAA Rhodochaete_parvula -G-----C----C---G-GCGACA---------G------AUCAUUCAAA Compsopogon_coeruleus -A-G---C----C---G-GCGACG---------G------UUCAUUCAAA Porphyridium_aerugineum -U-G---C-----------GACGU-------U---------UCAUUCAAA Rhodella_maculata -G-G---CC---G---G-CGACAA----------------AUCAUUCAAA Aulacoseira_ambigua -U-U---UAC--G---C-CGGCGA-------CGG------AUCAUGUAAG Aulacoseira_baicalensis -U-U---U----A---U-GCCGGC----G--UCGG-----AUCAGGUAAG Stephanopyxis_nipponica -A-U---G----C---C-GGCGAC-------A-G------AUCAUAUAAG Coscinodiscus_radiatus -G-G---UU---U---C-AUACUUG---A--U-GA-----CACAUCAUCC Corethron_criophilum -U-U---GU---G---U-UGGCGG----U--A-G------AUCAUUCGAG Amphora_cf._capitellata -G-G---U-----------GGCGA-------U-GG-----AUCAUUCAAG Sellaphora_pupula_f._capitata -A-C---U----G---C-CGGCGA-------U-GG-----AUCAUUCAAG Thalassiosira_antarctica -U-U---U----G---G-CGGCGA-------U-GG-----AUCAUUCAAG Encyonema_triangulatum ---U---U----G---C-UGGCGA----U--G-G------AUCAUUCAAG Achnanthes_bongranii -U-U---CG---G---G-CGGCGA-------U-GG-----AUCUUUCAAG F -------------------------------------------------- Diatoma_tenue -U-U---UAC--G---C-CGGCGA-------U-GG-----AUCAUUCAAG Grammatophora_marina -U-U---UGC--G---C-CGGCGA-------U-GG-----AUCAUUCAAG Thalassionema_sp._p474 ------------G---C-UGGCGA-------U-GG-----AUCAUUCAAG Rhaphoneis_belgicae -G-UA--U----G---C-CGGCAA-------U-G------GAUCAUUCAA Undatella_sp._p446 -U-U---UU---G---C-CGGCAG----A--U-GG-----AUCAUUCAAG Cymatosira_belgica -U-U---GU---G---C-UGGCGA-------U-GG-----AUCAUUCAAG Odontella_sinensis -U-C---U----A---C-GGCCGGCG--A--U-GC-----AUCAUUCAAG Ditylum_brightwellii -U-CCA-U----G---C-CGGCGA-------U-GG-----AUCAUUCAAG Lithodesmium_undulatum -U-C---UAU--G---C-CGGCGA-------U-GG-----AUCAUUCAAG Thalassiosira_eccentrica -U-CCA-U----G---C-CGGCGA-------U-GG-----AUCAUUCAAG Thalassiosira_pseudonana -G-GCU-C----C---A-UGCCGGCG--A--U-GG-----AUCAUUCAAG Skeletonema_costatum -G-U---U----G---C-GG-CAA-------U-GG-----AUCAUUCAAG Pleurosira_cf._laevis -U-CG--U----G---C-CGGCGA-------U-GG-----AUCAUUCAAG Lauderia_borealis -U-A---U----G---C-CGGCGA-------U-GG-----AUCAUUGAAG F -------------------------------------------------- Bolidomonas_mediterranea -U-GA--G----C---C-GGCGAC-------A-G------AUCAUUCAAG Bolidomonas_pacifica -A-G---C----C---G-GCGACA---------G------AUCAUUCAAG Labyrinthuloides_minuta -U-U---CG---G---C-CGGCGA-------U-G------AAUCAUUCAA Leptocylindrus_danicus -G-U---U----C---G-GGCGAU----G----G------AUCAUUCGGG Chaetoceros_sp. -A-U--------U---G-CAACAU----------------UUCAUUCAAG Aphanomyces_invadans -G-C---U----C---U-AAGCGA-------U-A------AGUCGAUUGA Lagenidium_giganteum -C-G---CAC--U---U-GUGCGG-------U-AA-----AUCGAUUGAG Melosira_varians -A-G---CU---U---U-AAGCUG----U--U-GACA---AGUCAUAUAA Blastocystis_hominis -U-G---U----A---G-CGAUGA----G--U----------CUUUCAAG Perkinsus_marinus -U-G---U----C---C-GG-CGA-------U-GG-----ACCAUUCAAG Toxoplasma_gondii -U-U---CG---G---U-CUGCGA-------C-G------GAUCAUUCAA Alexandrium_fundyense -A-A---CA---G---C-UGGUGA-------U-A------AUUCAUUCCA Babesia_bigemina ---G--------G---A-GUUCGU----U--U-U--------CCAUGGAU Babesia_canis -C-G---A----U---G-GACCAU-------U--------------CAAG Babesia_sp._'Oklahoma_dog' -C-G---CU---U---U-UAGCGA----U--G-G------ACCAUUCAAG Babesia_microti -U-U---G----C---C-GGCGAU----G--U--------AUCAUUCAAG Babesia_microti -U-U---G----C---C-GGCGAU----G--U--------AUCAUUCAAG Babesia_microti -U-U---G----C---C-GGCGAU----G--U--------AUCAUUCAAG Babesia_microti -U-U---G----C---C-GGCGAU----G--U--------AUCAUUCAAG Babesia_microti -U-U---G----C---C-GGCGAU----G--U--------AUCAUUCAAG Babesia_rodhaini -U-U--------G---C-CGGCGA-------U-GU-----AUCAUUCAAG Babesia_gibsoni -U-U---U----G---C-CGGCGA-------U-A------AUUCAUUCAA Babesia_bovis -G-C---U----A---U-GGAUAA----C--CGC------GCUAAUUGUG Jakoba_libera -A-G---U----G---C-CGGCGA----U--G-A------ACCAAUCAAG Reclinomonas_americana -A-G---U---------------G----G--U-G------AACCAAUCGA Bonamia_ostreae -U-U---C----G---C-CAGCGA----CA-U-G-------UCAUUCAAG Audouinella_dasyae -G-A--------G---C-GACGCA-------U----------CGUUCAAA Audouinella_hermannii -G-A--------C---G-CAUCGU-------U--------------CAAA Nemalion_helminthoides -G-A--------C---G-CAUCGU-------U--------------CAAG Batrachospermum_gelatinosum -G-A--------C---G-CAUCGU-------U--------------CAAA Nemalionopsis_tortuosa -G-A--------C---G-CAUCGU-------U--------------CAAG Thorea_hispida -U-G--------C---G-CGACGC----------------AUCGUUCAAG Thorea_violacea -U-G--------C---G-CGACGC----------------AUCGUUCAAG Thorea_violacea -C-G---C----A---C-GCGCAG-------U-GCGACGCAUCGUUCAAG Thorea_violacea -C-G---C----A---C-GCGCAG-------U-GCGACGCAUCGUUCAAG Nemalionopsis_shawii -G-A--------C---G-CAUCGU-------U--------------CAAG Balbiania_investiens -G-A--------C---G-CAUCGU-------U--------------CAAA Batrachospermum_macrosporum -G-G---U----G---C-GACACA-------U----------CGUUCAAA Ahnfeltia_plicata ---G---C----G---C-GACGCA-------U----------CGUUCAAA Corallina_officinalis -A-A---A----G---C-CGGCGA-------C-GC-----ACCGUUCAAA Rhodogorgon_carriebowensis -A-U---U----G---C-GGCGAC----G--C--------AUCGUUCAAA Bonnemaisonia_hamifera -U-A---U----G---U-GCGACG-------C--------AUCGUUCAAA Gelidium_vagum -C-A---CUAUGU---G-CGACGC----------------AUCGUUCAAA Chondrus_crispus ---G--------A---C-GCAUCG-------U-------------UCAAA Halymenia_plana -C-A---CUU--U---U-GUGCGA-------C-GC-----AUCGUUCAAA Rhodymenia_leptophylla ---G--------A---C-GCAUCG-------U-------------UCAAA Plocamiocolax_pulvinata -U-G--------C---G-ACAC-A-------U----------CGUUCAAA Ceramium_rubrum -U-U---G----U---G-CGACGC----------------AUCGUUCAAA Gracilariopsis_sp. -G-C---G----A---C-GCACCG-------U-------------UCAAA Bostrychia_moritziana -U-U---UUU--U---C-UGAUCA-------C--------ACUUUUAUGU Hildenbrandia_rubra -U-A---G----U---G-CGACAC----------------CCCGUUCAAA Dixonielloa_grisea -U-A---U----G---C-GGCGAC----G--U--------UUCAUUCAAA Naegleria_fowleri -G-G--------G---G-AAUCAG-------U---------GUUCGAUUC Naegleria_gruberi -G-G---G----G---A-AUCAGU----G--U-U-------CGAUUCCGG Hexamita_sp. ---A---C----G---G-GCAACU----C--U-C--------------UU Tritrichomonas_foetus ---A--------C---C-AAUCGA----U--U-G------AGCGACCUAU Amblyospora_khaliulini ---A--------G---U-GAACGG----C--U-C---------AGUAUAA Edhazardia_aedis ------------G---U-GUACGG----C--U-C---------AGUAUAA Amblyospora_connecticus ------------G---U-GAACGG----C--U-C---------AGUAUAA Intrapredatorus_barri ------------G---U-GUACGG----C--U-C---------AGUAGAA Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. ------------G---U-GUACGG----C--U-C---------AGUAAAA Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii -G-G---C----------GAACGG----C--U-C------AGUAAUACAG Weiseria_palustris -G-G---C----------GAACGG----C--U-C------AGUAAUACAG Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani ---G---C----------GAAAAG----C--U-C------AGUAAUACAA Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae -G----------G---C-GGAUAG----C--U-C------AGUAAUACAG Thelohania_solenopsae -G----------G---C-GGAUAG----C--U-C------AGUAAUACAG Visvesvaria_acridophagus -G----------G---C-GGACAG----C--U-C------AGUAAUAC-- Bacillidium_sp. -A-G--------U---A-AUAGAG-------U-U----------AAAAUU Pseudonosema_cristatellae -G----------G---C-GGACAG----C--U-C------AGUAAUACAG Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum ---G--------G---C-GGAAGG----C--U-C------AGUAACGGGC Pleistophora_mirandellae ---G--------G---C-AUAAGG----C--U-C------AGUAACGGGC Trachipleistophora_hominis ---G--------G---C-GCAAGG----C--U-C------AGUAACGGGC Vavraia_culicis -C-G---C------------AAGG----C--U-C------AGUAACGGGC F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii ---G--------G---C-GGAAGG----C--U-C------AGUAACGGGC F -------------------------------------------------- Dictyocoela_gammarellum ---G--------G---C-GAAAGG----C--U-C------AGUAACGGGC Microsporidium_prosopium ------------G---C-GGAAGG----C--U-C------AGUAACGGGC Antonospora_scoticae -A-G---CG---G---C-GGACGG----C--U-C---------AGUAGGA Paranosema_whitei -G----------G---C-GGACAG----C--U-C---------AGUAGGA #=GC SS_cons .>.>...>....................<..<.<................ Cynomorium_coccineum ---A-C--G--U--A--A-G-A--A------C-C--UAC-----C-C--- Cytinus_ruber ---G-C--G--U--A--A-G-A--A------U-C--UGU-----C-C--- Nicotiana_tabacum ---G-C--G--U--A--A-G-A--A------C-C--UGC-----C-C--- Spinacia_oleracea ---G-C--G--U--A--A-G-A--A------C-C--UGC-----C-C--- Zea_mays ---G-C--G--U--A--A-G-A--A------C-C--UGC-----C-C--- Marchantia_polymorpha ---G-C--G--U--A--A-G-A--A------C-C--UGC-----C-C--- Ricinus_communis ---G-C--G--U--A--A-G-A--A------C-C--UGC-----C-C--- F ---A-C--G--U--A--A-G-A--A------C-C--UAC-----C-U--- Prototheca_wickerhamii ---A-C--G--U--A--A-G-A--A------U-C--UAC-----C-U--- Pedinomonas_minor ---A-C--G--U--A--A-G-A--A------C-C--UAC-----C-C--- Nephroselmis_olivacea ---A-C--G--U--A--A-G-A--A------C-C--UAC-----C-C--- Pyramimonas_parkeae ---G-C--G--U--A--A-G-A--A------C-C--UAC-----C-C--- Chlamydomonas_reinhardtii ---G-C--G--U--A--A-G-A--A------C-C--UAC-----C-U--- Acanthamoeba_castellanii ---A-U--A--G--G--A-G-A--A------U-U--GAA-----G-U--- Pilostyles_thurberi ---G----A--U--A--A-------------U-----AA----------- Chondrus_crispus ---G-C--A--U--A--A-A-A--A------U-U--AAC-------C--- Toxoplasma_gondii ---G-U--A--U--G--A-G-A--A------U-U--UAU-----U-U--- Neurospora_crassa ---U-U--U--U--U--U-C-G--C------U-U---AA-----C-U--- Podospora_anserina ---U-CUAU--U--U--A-U-A--AGGUUAAU-C--UCU-----C-U--- Penicillium_chrysogenum ---G-A--U--A--A--A-U-U--G------G-C--UAC-----C-U--- Emericella_nidulans -----G--A--U--A--A-U-U--UG-----G-C--UAC-----C-U--- Saccharomyces_cerevisiae ---U-U--A--U--UA-G-G-A--A------U-U--AAUGAA--C-U--- Williopsis_saturnus_var._mrakii ---A-A--G-----U--G-G-U--G------U-A--UCCG----UGA--- Pedinomonas_minor --------U--U--A--A-A----A------------------------- Plasmodium_falciparum --------A--U--A--A-A----U------U-U--UUA-----A-U--- Babesia_bovis ---A-A--U--A--G--A-A----C------U-A--AAA-----U-U--- Tetrahymena_pyriformis ---A-U--U--U--A--A-A-U--AA-----U-AGUUAA-----U-U--- Suillus_sinuspaulianus ---A-A--U--A--AA-A-A-U--GA-----C-U--AAA-----G-C--- Paramecium_tetraurelia ---G-U--C--U--U--U-U-U--AU-----U-C--GUA-----U-UGUA Dictyostelium_discoideum -----C--A--U--A--U-G----AA-----U-U--UUA-----A-U--- Physarum_polycephalum ---U-C--G--G--A--A-A-U-GCA-----A-U--AAG-----G-U--- Pylaiella_littoralis --------C--U--C--A------UA-----U-C--UGG-----C-C--- Prototheca_wickerhamii -----C--G--U--G--A-G----AA-----U-C--UGC-----C-U--- Hydnora_africana --------A--U--A--A-G----AA-----C-U--UAUC----C-U--- Codium_fragile -----C--G--U--A--A-G----AA-----U-C--UGC-----U-U--- Caulerpa_sertularioides -----------U--A--A-G----AA-----C-C--AAC-----C-C--- F -----C--G--U--A--A-G----AA-----C-C--UAC-----C-U--- F ---A-C--U--U--A--A---U--AA-----U----UAA-----A-U--- Glaucocystis_nostochinearum -----C--G--U--G--A-G----AA-----U-C--UGC-----C-U--- Gloeochaete_wittrockiana -----C--G--U--G--A-G----AA-----U-C--UGC-----C-U--- Cyanophora_paradoxa -----C--G--U--G--A-G----AA-----U-C--UAC-----C-C--- Cyanophora_paradoxa -----C--G--U--G--A-G----AA-----U-C--UAC-----C-C--- Cryptomonas_sp. -----C--G--U--G--A-G----AA-----U-C--UAC-----C-C--- Palmaria_palmata -----C--G--U--G--A-G----AA-----U-C--UAC-----C-C--- Heterosigma_akashiwo -----C--G--U--G--A-G----AA-----U-C--UGC-----C-U--- Skeletonema_pseudocostatum -----C--G--U--G--A-G----AA-----U-U--UGC-----C-U--- Pylaiella_littoralis -----C--G--U--G--A-G----AA-----U-U--UAC-----C-U--- Cyanidium_caldarium -----C--G--U--G--A-G----AA-----U-C--UAC-----C-U--- Emiliania_huxleyi -----C--G--U--G--A-G----AA-----U-C--UGC-----C-C--- Euglena_gracilis -----------U--A--A-G----AA-----U-C--UGC-----G-C--- Anabaena_sp. -----C--G--U--G--A-G----AA-----U-C--UAG-----C-U--- F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -----C--G--U--G--A-G----AA-----U-C--UGC-----C-U--- F -------------------------------------------------- Oscillatoria_agardhii -----C--G--U--A--A-G----AA-----C-C--UGC-----C-U--- Pleurocapsa_sp. -----C--G--U--G--A-G----AA-----U-C--UGC-----C-U--- Microcystis_aeruginosa -----C--G--U--A--A-G----AA-----U-C--UAA-----C-U--- Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos -----------U--U--A-U-----G-------C---GA-----G-U--- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae -----------U--A--G-G-U--AA-----C-C--UGC-----C-U--- Streptococcus_pyogenes -----C--G--U--A--G-G-U--AA-----C-C--UGC-----C-U--- Bacillus_anthracis -----C--G--U--G--G-G-U--AA-----C-C--UGC-----C-C--- Bacillus_cereus -----C--G--U--G--G-G-U--AA-----C-C--UGC-----C-C--- Enterococcus_faecalis -----C--G--U--G--G-G-U--AA-----C-C--UAC-----C-C--- Enterococcus_faecium -----C--G--U--G--G-G-U--AA-----C-C--UGC-----C-C--- Listeria_monocytogenes -----------U--G--G-G-C--AA-----C-C--UGC-----C-U--- Bacillus_subtilis -----C--G--U--G--G-G-U--AA-----C-C--UGC-----C-U--- Bacillus_subtilis_A -----C--G--U--G--G-G-U--AA-----C-C--UGC-----C-U--- Bacillus_halodurans -----C--G--U--G--G-G-C--AA-----C-C--UGC-----C-U--- Staphylococcus_aureus -----C--G--U--G--G-A-U--AA-----C-C--UAC-----C-U--- Staphylococcus_aureus_N315 -----C--G--U--G--G-A-U--AA-----C-C--UAC-----C-U--- Lactococcus_lactis_subsp._lactis -----C--G--U--G--G-G-G--AA-----U-C--UGC-------C--- Streptococcus_pyogenes -----C--G--U--A--G-G-U--AA-----C-C--UAC-------C--- Lactobacillus_acidophilus -----C--G--U--G--G-G-G--AA-----C-C--UGC-----C-C--- Mycoplasma_capricolum -----C--G--U--A--U-C-U--AA-----C-C--UAC-----C-U--- Mycoplasma_mycoides -----C--G--U--A--U-C-U--AA-----C-C--UAC-----C-U--- Erysipelothrix_rhusiopathiae_(alpha-P15) -----C--A--U--A--A-G-C--AA-----C-C--UGC-----C-U--- Clostridium_innocuum -----C--G--U--A--G-G-U--AA-----C-C--UGC-------C--- Mycoplasma_genitalium -----C--G--U--A--U-C-C--AA-----U-C--UAC-----C-U--- Mycoplasma_pneumoniae -----C--G--U--A--U-C-C--AA-----U-C--UAC-----C-U--- Mycoplasma_pneumoniae -----C--G--U--A--U-C-C--AA-----U-C--UAC-----C-U--- Mycoplasma_gallisepticum -----C--G--U--A--U-C-C--AA-----U-C--UGC-----C-U--- Ureaplasma_urealyticum -----C--G--U--A--U-C-C--AA-----U-C--UAC-----C-C--- Ureaplasma_urealyticum -----C--G--U--A--U-C-C--AA-----U-C--UAC-----C-C--- Mycoplasma_hyopneumoniae -----C--G--U--A--C-C-U--AA-----C-C--UAC-----C-U--- Fusobacterium_necrophorum -----C--G--U--A--A-A-G--AA-----C-U--UGC-----C-U--- Fusobacterium_nucleatum_subsp._nucleatum -----C--G--U--A--A-A-G--AA-----C-U--UGC-----C-U--- Streptobacillus_moniliformis -----U--G--U--A--A-A-G--AA-----C-U--UAC-----C-U--- Clostridium_botulinum_type_f -----C--G--U--G--G-G-U--AA-----C-C--UGC----------- Clostridium_tetani --------G--U--G--G-G-C--AA-----C-C--UGC-----C-U--- Clostridium_perfringens -----C--G--U--G--G-G-U--AA-----C-C--UGC-----C-U--- Clostridium_difficile -----C--G--U--G--G-G-U--AA-----C-C--UAC-------C--- Eubacterium_brachy ---G-C--G--U--A--G-G-------------C---AA-----C-C--- Epulopiscium_sp. -----C--G--U--G--G-G-U--AA-----C-C--UAC-------C--- Heliobacterium_chlorum -----C--G--U--G--G-A-C--AA-----C-C--UAC-----C-G--- Glycine_max ---A-G--G--U--G--G-G----AA-------C--AGU-----UGA--- Oenothera_berteroana --------G--U--G--G-G----AA-------C--AGU-----UGA--- Secale_cereale ---A-G--G--G--C--G-C-G---C-----G-C--UACG----G-C--- Triticum_aestivum ---A-G--G--G--C--G-C-G---C-----G-C--UACG----G-C--- Zea_mays -----C--G--C--AACG-G----CU-----U-U--GAC-----C-U--- Marchantia_polymorpha ---U-CAGU--U--G--A-G-C--CU-----G-C--GGC-----C-U--- Nephroselmis_olivacea -----C--G--U--A--G-G----AA-----U-C--UAC-----C-C--- Gluconacetobacter_liquefaciens -----C--G--U--A--G-G----UA-----U-C--UAU-----C-C--- Bradyrhizobium_japonicum -----C--G--U--G--G-G----AA-----C-G--UAC-----C-U--- Rhodoblastus_acidophilus -----C--G--U--G--G-G----AA-----C-A--UGC-----C-C--- Azorhizobium_caulinodans -----C--G--U--G--G-G----GA-----U-G--UGC-----C-C--- Bartonella_quintana -----C--G--U--G--G-G----AA-----U-C--UAC-----C-C--- Mesorhizobium_loti -----C--G--U--G--G-G----AA-----U-C--UAC-----C-C--- Agrobacterium_tumefaciens -----C--G--U--G--G-G----AA-----U-C--UAC-------C--- Bartonella_bacilliformis -----C--G--U--G--G-G----AA-----U-C--UAC-----C-C--- Bartonella_henselae -----C--G--U--G--G-G----AA-----U-C--UAC-----C-C--- Brucella_melitensis -----C--G--U--G--G-G----AA-----C-G--UAC-------C--- Rhodobium_orientis -----C--G--U--G--G-G----AA-----U-C--UAC-----C-C--- F -------------------------------------------------- Rickettsia_bellii -----C--G--U--G--G-G----AA-----U-C--UGC-----C-C--- Rickettsia_felis_URRWXCal2 -----C--G--U--G--G-G----AA-----U-C--UGC-----C-C--- Rickettsia_prowazekii -----C--G--U--G--G-G----AA-----U-C--UAC-----C-C--- Rickettsia_prowazekii_(str._Madrid_E) -----C--G--U--G--G-G----AA-----U-C--UAC-----C-C--- Rickettsia_rickettsii -----C--G--U--G--G-G----AA-----U-C--UAC-----C-C--- Acinetobacter_calcoaceticus -----C--U--U--A--G-G----AA-----U-C--UGC-----C-A--- Psychrobacter_pacificensis -----C--U--U--A--G-G----AA-----U-C--UAC-----C-U--- Chromohalobacter_marismortui -----C--A--U--A--G-G----AA-----U-C--UAC-----C-C--- F -------------------------------------------------- Pseudomonas_aeruginosa -----C--C--U--A--G-G----AA-----U-C--UGC-----C-U--- Pseudomonas_aeruginosa -----C--C--U--A--G-G----AA-----U-C--UGC-----C-U--- Pseudomonas_sp. -----C--C--U--A--G-G----AA-----U-C--UGC-----C-U--- Pseudomonas_putida -----C--C--U--A--G-G----AA-----U-C--UGC-----C-U--- Coxiella_burnetii -----C--G--U--A--G-G----AA-----U-C--UAC-----C-U--- Methylococcus_capsulatus -----C--G--U--A--G-G----AA-----U-C--UGC-------C--- Legionella_pneumophila -----C--G--U--A--G-G----AA-----U-A--UGC-------C--- Legionella_pneumophila -----C--G--U--A--G-G----AA-----U-A--UGC-------C--- Allochromatium_vinosum -----C--A--U--G--G-G----AA-----U-C--UGC-----C-U--- Beggiatoa_sp._1401-13 -----C--A--U--A--G-G----AA-----U-C--UGC-----C-U--- Aeromonas_hydrophila -----C--C--U--G--G-G----GA-----U-C--UGC-----C-C--- Shewanella_putrefaciens -----C--C--U--A--G-G----GA-----U-C--UGC-----C-C--- Citrobacter_freundii -----------U--G--G-G----AA-----A-C--UGC-----G-U--- Shigella_dysenteriae -----------U--G--G-G----AA-----A-C--UGC-------C--- Klebsiella_pneumoniae -----------U--G--G-G----AA-----A-C--UGC-------C--- Plesiomonas_shigelloides -----C--C--U--G--G-G----GA-----U-C--UGC-----C-C--- Yersinia_pestis -----------U--G--G-G----GA-----U-C--UGC-------C--- F -------------------------------------------------- Shigella_dysenteriae -----------U--G--G-G----AA-----A-C--UGC-------C--- Escherichia_coli_O157:H7 -----------U--G--G-G----AA-----A-C--UGC-------C--- Escherichia_coli_O157:H7_EDL933 -----------U--G--G-G----AA-----A-C--UGC-------C--- Escherichia_coli -----------U--G--G-G----AA-----A-C--UGC-------C--- Escherichia_coli_K12 -----------U--G--G-G----AA-----A-C--UGC-------C--- Escherichia_coli -----------U--G--G-G----AA-----A-C--UGC-------C--- Escherichia_coli -----------U--G--G-G----AA-----A-C--UGC-------C--- Escherichia_coli -----------U--G--G-G----AA-----A-C--UGC-------C--- Salmonella_typhimurium -----------U--G--G-G----AA-----A-C--UGC-------C--- Serratia_marcescens -----------U--G--G-G----AA-----A-C--UGC-------C--- Edwardsiella_tarda -----------U--G--G-G----GA-----U-C--UGC-------C--- Proteus_vulgaris -----------U--G--G-G----GA-----U-C--UGC-------C--- Vibrio_cholerae -----------U--G--G-G----AA-----A-U--UGC-----C-C--- Vibrio_cholerae -----------U--G--G-G----AA-----A-U--UGC-----C-C--- Vibrio_cholerae -----------U--G--G-G----AA-----A-U--UGC-----C-C--- Vibrio_cholerae -----------U--G--G-G----AA-----A-U--UGC-----C-C--- Vibrio_cholerae -----------U--G--G-G----AA-----A-U--UGC-----C-C--- Vibrio_cholerae -----------U--G--G-G----AA-----A-U--UGC-----C-C--- F -------------------------------------------------- Haemophilus_influenzae -----------U--G--G-G----AA-----U-C--UGG-----C-U--- Haemophilus_influenzae -----------U--G--G-G----AA-----U-C--UGG-------C--- Haemophilus_influenzae -----------U--G--G-G----AA-----U-C--UGG-------C--- Haemophilus_influenzae -----------U--G--G-G----AA-----U-C--UGG-------C--- Haemophilus_influenzae_(operons_A-F) -----------U--G--G-G----AA-----U-C--UGG-------C--- Pasteurella_multocida -----------U--G--G-G----AA-----U-C--UGG-----C-U--- Pasteurella_multocida -----------U--G--G-G----AA-----U-C--UGG-----C-U--- Xanthomonas_albilineans -----------U--C--G-G----AA-----U-C--UAC-----C-U--- Xanthomonas_campestris -----------U--C--G-G----AA-----U-C--UAC-----U-C--- Xylella_fastidiosa -----------U--C--G-G----AA-----U-C--UAC-----C-U--- Dichelobacter_nodosus -----------U--A--G-G----AA-----U-C--UGC-------C--- Francisella_tularensis -----C--G--U--A--G-G----AA-----U-C--UGC-----C-C--- Bordetella_parapertussis -----------U--C--G-G----AA-----C-G--UGC-----C-C--- Bordetella_pertussis -----------U--C--G-G----AA-----C-G--UGC-----C-C--- Bordetella_bronchiseptica -----------U--C--G-G----AA-----C-G--UGC-----C-C--- unidentified_proteobacterium -----C--A--U--C--G-G----AA-----C-G--UGC-----C-C--- Burkholderia_mallei -----C--A--U--C--G-G----AA-----C-A--UGU-----C-C--- Burkholderia_sp. -----C--A--U--C--G-G----AA-----C-G--UGU-----C-C--- F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -----------U--C--G-G----AA-----C-G--UAC-----C-G--- Comamonas_testosteroni -----C--A--U--C--G-G----AA-----C-G--UGC-----C-U--- Desulfovibrio_desulfuricans -----C--G--U--G--G-A-U--AA-----U-C--UGC-----C-C--- Myxococcus_xanthus -----C--G--U--G--G-A-U--AA-----U-C--UGC-----C-U--- Deferribacter_thermophilus -----C--G--U--G--A-G-C--AA-----C-C--UAC-----C-C--- Borrelia_burgdorferi -----C--G--U--G--G-A-U--GA-----U-C--UAC-----C-U--- Borrelia_burgdorferi -----C--G--U--G--G-A-U--GA-----U-C--UAC-----C-U--- Borrelia_hermsii -----C--G--U--G--G-A-U--AA-----U-C--UAC-----C-U--- Spirochaeta_aurantia -----C--G--U--A--G-G-U--GA-----U-C--UGC-----C-U--- Treponema_pallidum_(rRNA_A) -----C--G--U--G--G-G-U--AA-----U-C--UGC-----C-U--- Leptonema_illini -----C--G--U--A--G-G-U--AA-----U-U--UGC-------C--- Leptospira_interrogans -----C--G--U--G--G-G-U--AA-----U-C--UUC-----C-U--- Chlamydia_trachomatis_D/UW-3/CX -----C--A--U--A--G-A-U--AA-----U-U--UGU-----C-C--- Chlamydia_trachomatis_L2/434/BU -----C--A--U--A--G-A-U--AA-----U-U--UGU-----C-C--- Chlamydia_muridarum -----C--A--U--A--G-A-U--AA-----U-U--UGU-----C-C--- Chlamydophila_pneumoniae_AR39 -----C--A--U--A--G-A-U--AA-----U-C--UGC-----C-C--- Chlamydophila_pneumoniae -----C--A--U--A--G-A-U--AA-----U-C--UGC-----C-C--- Chlamydophila_pneumoniae_J138 -----C--A--U--A--G-A-U--AA-----U-C--UGC-----C-C--- F -------------------------------------------------- Chlamydophila_psittaci -----C--A--U--A--G-A-U--AA-----U-C--UGU-----C-C--- Deinococcus_radiodurans -----C--G--U--A--A-C-U--GA-----C-C--UAC-----C-C--- Deinococcus_radiodurans -----C--G--U--A--A-C-U--GA-----C-C--UAC-----C-C--- Bacteroides_fragilis -----C--G--U--A--U-C-C--AA-----C-C--UGC-----C-C--- Porphyromonas_gingivalis -----C--G--U--A--U-G-C--AA-----C-U--UGC-----C-U--- Prosthecochloris_vibrioformis -----U--A--U--A--G-G-U--AAG----U-U---GC-----C-U--- Campylobacter_jejuni ---G-U--A--U--A--G-U-U--AA-----U-C--UGC-----C-C--- Campylobacter_jejuni ---G-U--A--U--A--G-U-U--AA-----U-C--UGC-----C-C--- Campylobacter_sputorum AA-A-G--CA-G--U--U-A-G--AU-----U-U--AAUAAAU-U-U--- F -------------------------------------------------- Helicobacter_pylori_J99 -----C--A--U--A--G-G-U--CA-----U-G--UGC-----C-U--- Helicobacter_pylori -----C--A--U--A--G-G-U--CA-----U-G--UGC-----C-U--- Acidobacterium_capsulatum -----C--G--U--G--A-C-U--AA-----C-C--UAC-------C--- Holophaga_foetida -----C--G--U--A--G-G-A--GA-----C-C--UAC-----C-U--- Arthrobacter_globiformis -----C--G--U--G--A-G-U--AA-----C-C--UGC-----C-C--- Micrococcus_luteus -----C--G--U--G--A-G-U--AA-----C-C--UGC-----C-C--- Frankia_sp. -----C--G--U--G--G-G-C--AA-----C-C--UGC-------C--- Streptomyces_bottropensis -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Streptomyces_scabiei -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Streptomyces_neyagawaensis -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- F -------------------------------------------------- Streptomyces_sp. -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Streptomyces_acidiscabies -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Streptomyces_griseus -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Streptomyces_ornatus -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Streptomyces_subrutilus -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Streptomyces_bikiniensis -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Streptomyces_galbus -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Streptomyces_hygroscopicus -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Streptomyces_lincolnensis -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Streptomyces_coelicolor -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Streptomyces_tendae -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Streptomyces_ambofaciens -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Streptomyces_eurythermus -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Streptomyces_nodosus -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Streptomyces_sampsonii -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Streptomyces_glaucescens -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Streptomyces_pseudogriseolus -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Streptomyces_caelestis -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Streptomyces_bluensis -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Streptomyces_espinosus -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Streptomyces_mashuensis -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Streptomyces_rimosus -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Streptomyces_limosus -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Streptomyces_odorifer -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Streptomyces_felleus -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Streptomyces_albidoflavus -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Streptomyces_gougerotii -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Streptomyces_rutgersensis -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Streptomyces_intermedius -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- F -------------------------------------------------- Streptomyces_thermoviolaceus -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Streptomyces_megasporus -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Streptomyces_thermolineatus -----C--G--U--G--G-G-C--AA-----U-C--UGC-----C-C--- Mycobacterium_tuberculosis -----C--G--U--G--G-G-U--GA-----U-C--UGC-----C-C--- Mycobacterium_tuberculosis -----C--G--U--G--G-G-U--GA-----U-C--UGC-----C-C--- Mycobacterium_avium -----C--G--U--G--G-G-C--AA-----U-C--UAC-----C-C--- Mycobacterium_leprae -----C--G--U--G--G-G-U--AA-----U-C--UGC-----C-C--- Mycobacterium_leprae -----C--G--U--G--G-G-U--AA-----U-C--UGC-----C-C--- F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides -----C--G--U--G--G-G-U--GA-----U-C--UGC-----C-U--- Rhodococcus_erythropolis -----C--G--U--G--G-G-U--GA-----U-C--UGC-----C-C--- Corynebacterium_diphtheriae -----C--G--U--G--G-G-U--GA-----U-C--UGC-----C-U--- Actinomyces_israelii -----C--G--U--G--A-G-U--AA-----C-C--UGC-----C-C--- Brachyspira_hyodysenteriae -----C--G--U--A--G-G-U--AA-----U-C--UGC-----C-G--- Geotoga_subterranea -----C--G--U--A--G-G----AA-----C-C--UGC-----C-U--- Petrotoga_miotherma -----------U--A--G-G----GA-----C-C--UAC-----C-C--- Brevinema_andersonii -----C--G--U--A--G-G----AA-----U-C--UGC-------C--- Herpetosiphon_aurantiacus -----C--G--U--G--A-C-U--AA-----C-C--UAC-----C-C--- F -------------------------------------------------- Aquifex_aeolicus -----C--G--U--G--G-G-U--AA-----C-C--UAC-----C-C--- Aquifex_pyrophilus -----C--G--U--G--G-G-U--AA-----C-C--UAC-----C-C--- Thermotoga_maritima -----C--G--U--G--G-G-U--AA-----C-C--UGC-----C-C--- Thermotoga_maritima -----C--G--U--G--G-G-U--AA-----C-C--UGC-----C-C--- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -----C--G--U--G--G-G-U--GA-----C-C--UAC-----C-C--- F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -----C--G--U--G--G-G-U--GA-----C-C--UAC-----C-C--- Thermus_aquaticus -----C--G--U--G--G-G-U--GA-----C-C--UAC-----C-C--- Thermomicrobium_roseum -----C--G--U--G--G-G-G--AA-----C-C--CUC-----C-C--- Pirellula_marina -----G--G--U--G--G-U-U--UA-----U-C--UAC-------C--- Pirellula_staleyi -----C--G--U--A--G-G----AA-----C-C--UAC-------C--- Planctomycetaceae_Schlesner_670 -----C--U--U--A--G-G----UA-----C-C--UGC-----C-U--- Gemmata_obscuriglobus -----C--A--U--G--G-G----UA-----C-C--UAC-------C--- Isosphaera_pallida ---G-C--G--A--C--G-G-C--AA-----C-C--UAC-----C-C--- Pyrococcus_abyssi -----C--G--U--C--G-G-U--AA-----C-C--UAC-----C-C--- Pyrococcus_horikoshii -----C--G--U--C--G-G-U--AA-----C-C--UAC-----C-C--- Pyrococcus_furiosus ---U-CG-G--U------------AA-----C-C--UAC-------C--- Thermococcus_celer -----C--G--U--C--G-G-U--AA-----C-C--UAC-----C-C--- Archaeoglobus_fulgidus -----C--G--U--G--G-A-C--AA-----C-C--UGC-----C-C--- Nanoarchaeum_equitans -----C--G--U--C--G-G-U--AA-----C-C--UAC-----C-C--- Aeropyrum_pernix_(str._K1) -----C--G--U--G--G-C-U--AA-----C-C--UAC-----C-C--- Pyrodictium_occultum -----C--G--U--G--G-C-C--AA-----C-C--UAC-----C-C--- Thermoproteus_tenax -----C--G--U--A--C-C-C--AA-----C-C--UAA-----C-C--- Sulfolobus_acidocaldarius -----C--G--U--G--G-C-U--AA-----C-C--UAC-----C-C--- Sulfolobus_solfataricus -----C--G--U--G--G-C-U--AA-----C-C--UAC-----C-C--- Bacteroides_fragilis -----C--G--U--G--G-C-U--AA-----C-C--UAC-----C-C--- F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum -----C--G--U--G--G-A-U--AA-----C-C--UAA-----C-C--- Methanococcus_vannielii -----C--G--U--G--G-U-U--AA-----C-U--UAA-----C-C--- F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -----C--G--U--G--G-C-C--AA-----G-C--UAC-----C-C--- Natronorubrum_bangense -----C--G--U--G--G-C-C--AA-----A-C--CAC-----C-C--- Natronobacterium_innermongoliae -----C--G--U--G--G-C-C--AA-----A-C--UAC-----C-C--- Haloferax_volcanii -----C--G--U--G--G-C-C--AA-----A-C--UAC-----C-C--- Methanospirillum_hungatei -----C--G--U--G--G-A-C--AA-----U-C--UGC-----C-C--- Picrophilus_torridus_DSM_9790 -----C--G--C--G--G-A-U--AA-----U-C--UAC-----C-C--- Thermoplasma_acidophilum -----C--G--U--G--G-A-U--AA-----U-U--UAC-------C--- Giardia_ardeae -----------------G-G-----------U-C----------G-G--- Giardia_intestinalis --------G--G--U--C-C-C---U-----G-C---UA----------- Giardia_muris --------G--U--A--C-G----AG-----U-C--UGA----------- Amblyospora_bracteata --------------G--A-C-C-UAA-----U-C--UAU-----C-C--- Glomus_sp._W3349 A--U-U--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Scutellospora_cerradensis ---U-U--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Glomus_intraradices A--U-U--U--C--U--G-C-C-CUA-----U-C---AA-----C-U--- Smittium_culisetae ---G----A--G--G--A-C-U---A-----C-C--AUG-----G-U--- Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus A--U-U--U--C--U--G-C-C-CUA-----U-C---AA-----C-U--- Tilletia_caries A--U-A--U--C--U--G-C-C-CUA-----U-C---AA-----C-UG-- Mucor_circinelloides_f._lusitanicus -----C--A-----G--U-C-C---A-----C-U--CGA-----U-U--- Mucor_racemosus -----C--A-----G--U-C-C---A-----C-U--CGA-----U-U--- Rhizopus_oryzae -----C--G-----G--U-C-C---A-----C-U--CGA-----U-U--- Mytilus_edulis ---U-G--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Placopecten_magellanicus ---U-G--U--C--U--GAC-C--UA-----U-C--AAC-----U-U--- Echinococcus_granulosus ---U-C--A--G--A--A-G-C-CAA-----C-C--AAC-----U-G--- Drosophila_melanogaster --------G--U--U--G-C-----A-----A-C--GGG-----U-A--- Crossodonthina_koreana ---U-G--U--C--U--G-C-C-UUA-----U-C---AA-----C-UG-- Androctonus_australis ---U-G--U--C--U--G-C-C-UUA-----U-C--AAC-----U-U--- Okanagana_utahensis ---U-A--A--C--G--G-G-G--AA-----U-C----------A-G--- Artemia_salina ---U-G--U--C--U--G-C-C-UUA-----U-C--AAC-----U-U--- Mus_musculus ---C-G--U--C--U--G-C-C-CUA-----U-C---AA-----C-U--- Rattus_norvegicus ---C-G--U--C--U--G-C-C-CUA-----U-C---AA-----C-U--- Homo_sapiens ---C-G--U--C--U--G-C-C-CUA-----U-C---AA-----C-U--- Oryctolagus_cuniculus ---C-G--U--C--U--G-C-C-CUA-----U-C---AA-----C-U--- Xenopus_borealis A--U-G--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Xenopus_laevis A--U-G--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Acanthamoeba_castellanii ---C-G--C--A--G--A-G-G--GA-----U-G--UAU-------U--- Balamuthia_mandrillaris --------G--U--C--G-U-----A-----A-C--GGG-----U-AA-- Plasmodium_falciparum ---G-A--G--U--U--U-C-U--GA-----C-C--UAUCA---G-C--- Plasmodium_falciparum ---U-U--U--U--G--A-U-A--UA-----U-A--CAU-----A-U--- Plasmodium_vivax ---U-A--U--UG-G--C-C-U--AA-------CA-UGG----------- Plasmodium_vivax C--U-U--U--U--G--A-U----UA-----A-C--UUC-----U-U--- Plasmodium_vivax ---U-A--A--C--G--G-G-G--AA-----U-U--AGA-----G-U--- Entamoeba_histolytica -----C--------A--G-------------U-U--UGU-----A-U--- Ichthyophonus_hoferi A--U-C--U--C--U--G-C-C-CUA-----U-C---AA-----C-U--- Dermocystidium_sp. A--U-U--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Sphaerothecum_destruens A--U-U--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Acanthocoepsis_unguiculata A--U-U--U--C--U--G-C-C-CUA-----U-C---AA-----C-U--- Diaphanoeca_grandis A--U-U--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Allomyces_macrogynus ---U-U--U--C--U--G-C-C-CUA-----U-C---AA-----C-U--- Blastocladiella_emersonii ---U-U--U--C--U--G-C-C-CUA-----U-C---AA-----C-U--- Candida_albicans ---A-C--A--U--GC-U-U-A--AA-----A-U--CCCG----A-C--- Saccharomyces_cerevisiae A--U-U--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Neurospora_crassa A--U-U--U--C--U--G-C-C-CUA-----U-C---AA-----C-U--- Podospora_anserina A--U-U--U--C--U--G-C-C-CUA-----U-C---AA-----C-U--- Coccidioides_immitis A--U-U--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Leishmania_major ---C-G--G--U--G--G-G-C--AACCA--U-CGUCGUG----A-G--- Trypanosoma_cruzi ---G-G--C--A--G--G-G-C--AACCUGCUGC--CAU-----G-G--- Trypanosoma_brucei ---UAC--GA-U--GA-G-G----CA-----G-CG-AAAA----G-A--- Pneumocystis_carinii A--U-U--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Cryptococcus_neoformans_var._neoformans A--U-A--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- fungal_contaminant_of_QPX_isolate A--U-A--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Ustilago_maydis A--U-A--U--C--U--G-C-C-CUA-----U-C---AA-----C-UG-- Mnemiopsis_leidyi ---G-G--CGAU--G--U-U-U--CA-----U-U--CGA-----G-U--- Tripedalia_cystophora ---U-A--U--C--U--G-C-C-CUA-----U-C---AA-----C-UG-- Microciona_prolifera A--U-U--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Psorospermium_haeckeli A--U-U--U--C--U--G-C-C-CUA-----U-C---AA-----C-U--- Euglypha_rotunda A--U-U--U--C--U--G-C-C-CUA-----U-C--AGC-----U-U--- Paulinella_chromatophora ---U-U--U--C--U--G-C-C-CUA-----U-C--AGC-----U-U--- Antirrhinum_majus ---U-U--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Sesamum_indicum ---U-U--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Digitalis_grandiflora ---U-U--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Plantago_lanceolata ---U-U--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Nicotiana_tabacum ---U-U--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Arabidopsis_thaliana ---U-U--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Sinapis_alba ---U-U--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Solanum_tuberosum ---U-U--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Fragaria_x_ananassa ---U-A--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Glycine_max ---U-U--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Oryza_sativa ---U-U--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Zea_mays ---U-U--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- F -------------------------------------------------- Genicularia_spirotaenia ---U-U--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- F -------------------------------------------------- Cyanophora_paradoxa A--U-U--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Glaucocystis_nostochinearum A--U-U--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Gloeochaete_wittrockiana ---U-U--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- FChlorella'_luteoviridis A--U-U--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Oxytricha_longa G--U-U--U--C--U--G-C-C-CCA-----U-C--AGC-----U-U--- Paraurostyla_weissei ---U-U--U--C--U--G-C-C-CCA-----U-C--AGC-----U-U--- Cyrtohymena_citrina ---U-U--U--C--U--G-C-C-CCA-----U-C--AGC-----U-U--- Gastrostyla_steinii ---U-U--U--C--U--G-C-C-CCA-----U-C--AGC-----U-U--- Pleurotricha_lanceolota ---U-U--U--C--U--G-C-C-CCA-----U-C--AGC-----U-U--- Onychodromus_quadricornutus ---U-U--U--C--U--G-C-C-CCA-----U-C--AGC-----U-U--- Stylonychia_lemnae ---U-U--U--C--U--G-C-C-CCA-----U-C--AGC-----U-U--- Stylonychia_mytilus ---U-U--U--C--U--G-C-C-CCA-----U-C--AGC-----U-U--- Engelmanniella_mobilis ---U-U--U--C--U--G-C-C-CCA-----U-C--AGC-----U-U--- Oxytricha_granulifera ---U-U--U--C--U--G-C-C-CCA-----U-C--AGC-----U-U--- Oxytricha_granulifera ---U-U--U--C--U--G-C-C-CCA-----U-C--AGC-----U-U--- Uroleptus_gallina ---U-U--U--C--U--G-C-C-CCA-----U-C--AGC-----U-U--- Uroleptus_pisces G--U-U--U--C--U--G-C-C-CCA-----U-C--AGC-----U-U--- Paruroleptus_lepisma G--U-U--U--C--U--G-C-C-CCA-----U-C--AGC-----U-U--- Urostyla_grandis G--U-U--U--C--U--G-C-C-CCA-----U-C--AGC-----U-U--- Balantidium_coli -----------C--A--U-G---CCG-------A--GGC-----C-G--- Euplotes_aediculatus --------G--C--U--A-------------U-C--GGG-----G-G--- Tetrahymena_thermophila ---U-U--U--C--U--G-C-C-CUA-----U-C--AGCU----C-U--- Bangia_sp._(Northwest_Territories/NWT) A--U-U--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Bangia_sp._(Virgin_Islands/VIS7) G--U-U--U--C--U--G-C-C-CUA-----U-C---AG-----C-UG-- Erythrotrichia_carnea ---U-U--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Rhodochaete_parvula ---U-U--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Compsopogon_coeruleus ---U-U--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Porphyridium_aerugineum ---U-U--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Rhodella_maculata ---U-A--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Aulacoseira_ambigua ---U-U--C--C--U--G-C-C-CUA-----U-C--AGC-----U-U--- Aulacoseira_baicalensis ---U-U--C--C--U--G-C-C-CCA-----U-C--AGC-----U-U--- Stephanopyxis_nipponica ---U-U--U--C--U--G-C-C-CUA-----U-C--AGC-----U-U--- Coscinodiscus_radiatus A--A-G--U--U--UCCG-C-C-CUA-----U-C--AGC-----U-U--- Corethron_criophilum ---U-U--U--C--U--G-C-C-CUA-----U-C--AGC-----U-U--- Amphora_cf._capitellata ---U-U--U--C--U--G-C-C-CUA-----U-C--AGC-----U-U--- Sellaphora_pupula_f._capitata ---U-U--U--C--U--G-C-C-CUA-----U-C--AGC-----U-U--- Thalassiosira_antarctica ---U-U--U--C--U--G-C-C-CUA-----U-C--AGC-----U-U--- Encyonema_triangulatum ---U-U--U--C--U--G-C-C-CUA-----U-C--AGC-----U-U--- Achnanthes_bongranii ---U-U--U--C--U--G-C-C-CUA-----U-C--AGC-----U-U--- F -------------------------------------------------- Diatoma_tenue ---U-U--U--C--U--G-C-C-CUA-----U-C--AGC-----U-U--- Grammatophora_marina ---U-U--U--C--U--G-C-C-CUA-----U-C--AGC-----U-U--- Thalassionema_sp._p474 ---U-U--U--C--U--G-C-C-CUA-----U-C--AGC-----U-U--- Rhaphoneis_belgicae ---G-UU-U--C--U--G-C-C-CUA-----U-C--AGC-----U-U--- Undatella_sp._p446 ---U-U--U--C--U--G-C-C-CUA-----U-C--AGC-----U-U--- Cymatosira_belgica ---U-U--U--C--U--G-C-C-CUA-----U-C--AGC-----U-U--- Odontella_sinensis ---U-U--U--C--U--G-C-C-CUA-----U-C--AGC-----U-U--- Ditylum_brightwellii ---U-U--U--C--U--G-C-C-CUA-----U-C--AGC-----U-U--- Lithodesmium_undulatum ---U-U--U--C--U--G-C-C-CUA-----U-C--AGC-----U-U--- Thalassiosira_eccentrica ---U-U--U--C--U--G-C-C-CUA-----U-C--AGC-----U-U--- Thalassiosira_pseudonana ---U-U--U--C--U--G-C-C-CUA-----U-C--AGC-----U-U--- Skeletonema_costatum ---U-U--U--C--U--G-C-C-CUA-----U-C---AG-----C-U--- Pleurosira_cf._laevis ---U-U--U--C--U--G-C-C-CUA-----U-C--AGC-----U-U--- Lauderia_borealis ---U-U--U--C--U--G-C-C-CUA-----U-U---AA-----C-U--- F -------------------------------------------------- Bolidomonas_mediterranea ---U-U--U--C--U--G-C-C-CUA-----U-C--AGC-----U-U--- Bolidomonas_pacifica ---U-U--U--C--U--G-C-C-CUA-----U-C--AGC-----U-U--- Labyrinthuloides_minuta G--U-U--U--C--U--G-C-C-CUA-----U-C---AG-----C-UG-- Leptocylindrus_danicus ---A-U--U--C--U--G-C-C-CUA-----U-C--AGG-----U-G--- Chaetoceros_sp. ---U-U--U--C--U--G-C-C-CUA-----U-C--AGC-----U-U--- Aphanomyces_invadans G--U-U--U--C--U--G-C-C-CUA-----U-C--AGC-----U-U--- Lagenidium_giganteum ---U-U--U--C--U--G-C-C-CUA-----U-C--AGC-----U-U--- Melosira_varians G--U-U--U--C--U--G-C-C-CUA-----U-C--AGC-----U-U--- Blastocystis_hominis ---U-U--U--C--U--G-C-C-CUA-----U-C--AGC-----U-U--- Perkinsus_marinus ---U-U--U--C--U--GAC---CUA-----U-C--AGC-----U-A--- Toxoplasma_gondii ---G-U--U--U--C--U-GAC-CUA-----U-C--AGC-----U-U--- Alexandrium_fundyense ---G-U--U--U--C--U-GAC-CUA-----U-C--AGC-----U-U--- Babesia_bigemina ---A-A--C--C--G--U-G----CU-----A-A----U-----U-G--- Babesia_canis ---U-U--U--C--U--GAC---CCA-----U-C---AG-----C-U--- Babesia_sp._'Oklahoma_dog' ---U-U--U--C--U--GAC---CCA-----U-C---AG-----C-U--- Babesia_microti ---U-U--U--C--U--GAC---CUA-----U-C--AGC-----U-U--- Babesia_microti ---U-U--U--C--U--GAC---CUA-----U-C--AGC-----U-U--- Babesia_microti ---U-U--U--C--U--GAC---CUA-----U-C--AGC-----U-U--- Babesia_microti ---U-U--U--C--U--GAC---CUA-----U-C--AGC-----U-U--- Babesia_microti ---U-U--U--C--U--GAC---CUA-----U-C--AGC-----U-U--- Babesia_rodhaini ---U-U--U--C--U--GAC---CUA-----U-C--AGC-----U-U--- Babesia_gibsoni ---G-U--U--U--C--U-GAC-CUA-----U-C--AGC-----U-U--- Babesia_bovis --------------U--G-G-C-UAA-----U-A--CAC-----G-U--- Jakoba_libera ---U-U--U--C--U--G-C-C-CUA-----U-C--AGC-----U-U--- Reclinomonas_americana G--U-U--U--C--U--G-C-C-CUA-----U-C--AGC-----U-U--- Bonamia_ostreae ---U-U--U--C--U--GAC---CUA-----U-C---AG-----C----- Audouinella_dasyae ---U-U--U--C--U--GAC---CUA-----U-C--AAC-----U-U--- Audouinella_hermannii ---U-U--U--C--U--GAC---CUA-----U-C--AAC-----U-U--- Nemalion_helminthoides ---U-U--U--C--U--GAC---CUA-----U-C--AAC-----U-U--- Batrachospermum_gelatinosum ---U-U--U--C--U--GAC---CUA-----U-C--AAC-----U-U--- Nemalionopsis_tortuosa ---U-U--U--C--U--GAC---CUA-----U-C--AAC-----U-U--- Thorea_hispida ---U-U--U--C--U--GAC---CUA-----U-C--AAC-----U-U--- Thorea_violacea ---U-U--U--C--U--GAC---CUA-----U-C--AAC-----U-U--- Thorea_violacea ---U-U--U--C--U--GAC---CUA-----U-C--AAC-----U-U--- Thorea_violacea ---U-U--U--C--U--GAC---CUA-----U-C--AAC-----U-U--- Nemalionopsis_shawii ---U-U--U--C--U--GAC---CUA-----U-C--AAC-----U-U--- Balbiania_investiens ---U-U--U--C--U--GAC---CUA-----U-C--AAC-----U-U--- Batrachospermum_macrosporum ---U-U--U--C--U--GAC---CUA-----U-C--AAC-----U-U--- Ahnfeltia_plicata ---U-U--U--C--U--GAC---CUA-----U-C---AA-----C-U--- Corallina_officinalis ---U-U--U--C--U--GAC---CUA-----U-C--AAC-----U-U--- Rhodogorgon_carriebowensis ---U-U--U--C--U--GAC---CUA-----U-C--AAC-----U-U--- Bonnemaisonia_hamifera ---U-U--U--C--C--GAC---CUA-----U-C--AAC-----U-U--- Gelidium_vagum ---U-U--U--C--U--GAC---CUA-----U-C--AAC-----U-U--- Chondrus_crispus ---U-U--U--C--U--GAC---CUA-----U-C--AAC-----U-U--- Halymenia_plana ---U-U--U--C--U--GAC---CUA-----U-C--AAC-----U-U--- Rhodymenia_leptophylla ---U-U--U--C--U--GAC---CUA-----U-C--AAC-----U-U--- Plocamiocolax_pulvinata ---U-U--U--C--U--GAC---CUA-----U-C--AAC-----U-U--- Ceramium_rubrum ---U-U--U--C--U--GAC---CUA-----U-C--AAC-----U-U--- Gracilariopsis_sp. ---U-U--U--C--U--GAC---CUA-----U-C--AAC-----U-U--- Bostrychia_moritziana ---G-U--G--UGAC--G-C-UCCGA-----U-C--AAA-----U-U--- Hildenbrandia_rubra ---U-U--U--C--U--GAC---CUA-----U-C--AAC-----U-U--- Dixonielloa_grisea ---U-U--U--C--U--G-C-C-CUA-----U-C--AAC-----U-U--- Naegleria_fowleri -----C--G--G--A--G-A-G-GGA-----G-C----------C-U--- Naegleria_gruberi -----A--G--A--G--G-G-----A-----G-C----------C-U--- Hexamita_sp. -----------------A-----CUA--------------------A--- Tritrichomonas_foetus --------C--A--U--G-C----UA-----G-U---AC-----U-U--- Amblyospora_khaliulini -----C--A--C--G--U-C----UA-----U-C--UACC----C-A--- Edhazardia_aedis -----C--A--C--C--U-A----UA-----U-C----------U-A--- Amblyospora_connecticus -----C--A--C--G--U-C----UA-----U-C--UAC----------- Intrapredatorus_barri --------------C--A-C-----G-----U-C----U-------A--- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. -----C--A--C--G--U-C----AA-----U-C--UAC-----C-C--- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii --------U--U--AU-G-A-U-CUAU----U-C--AUG-----C----- Weiseria_palustris --------U--U--AU-G-A-U-CUA-----C-U--CACA----C-A--- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani -----------------------UCA------------------------ Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae ---U-------U-----A-----CAA-----C-A--UAA-------G--- Thelohania_solenopsae -----U--U--A--U--A-A-----------C-A--UAA-----U-C--- Visvesvaria_acridophagus -----A--G--U--U--A-----UAA-----U-A--UAC-----U-C--- Bacillidium_sp. -----A--A--C--U--------CGU-----G-A--AAU----------- Pseudonosema_cristatellae ---U-------U-----A-----UUA-----U-U--UAC-------U--- Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum -----------------G-U---CUA-----U-U--UGA-----U-C--- Pleistophora_mirandellae -----------------G-U---CUA-----U-U--UGA-----U-C--- Trachipleistophora_hominis ---G----A--C--U---------GA-----U-U--UGA-----U-C--- Vavraia_culicis ---G----A--C--U---------GA-----U-U--UGA-----U-C--- F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii GAGU-A--U--U--U--U-A-----A------------------U-C--- F -------------------------------------------------- Dictyocoela_gammarellum ---G-A--U--U--U--------AUU----------UAU-----U-C--- Microsporidium_prosopium --------------G--U-C---UAA-----U-U--UGA-----U-C--- Antonospora_scoticae -----------C--G--G-C-GAUAA-----U-U--CAC----------- Paranosema_whitei -----C--A--G--C--G-A---UAA-----U-C--CAC----CC-G--- #=GC SS_cons ...<.<..<..<..<..<.<.<.........<.<..........<.<... Cynomorium_coccineum --U-U--G-G-G----A----G----G-G-G-A----ACA-------A-C Cytinus_ruber --U-U--G-G-G----A----G----G-G-G-A----ACA-------A-C Nicotiana_tabacum --U-U--G-G-G----A----G----G-G-G-A----ACA-------A-C Spinacia_oleracea --U-U--G-G-G----A----G----G-G-G-A----ACA-------A-C Zea_mays --U-U--G-G-G----A----G----G-G-G-A----ACA-------A-C Marchantia_polymorpha --U-U--G-G-G----A----G----G-G-G-G----ACA-------A-C Ricinus_communis --U-U--G-G-G----A----G----G-G-G-A----ACA-------A-C F --U-U--U-G-G----A----G----A-G-G-G----AUA-------A-C Prototheca_wickerhamii --U-U--U-G-G----A----G----A-G-G-G----AUA-------A-C Pedinomonas_minor --U-U--U-G-G----A----G----G-A-G-G----AUA-------A-C Nephroselmis_olivacea --U-U--U-G-G----A----G----G-G-G-G----AUA-------A-C Pyramimonas_parkeae --U-U--A-G-G----A----A----G-G-G-G----ACA-------A-C Chlamydomonas_reinhardtii --A-U--C-G-G----A----G----G-G-G-G----AUA-------A-C Acanthamoeba_castellanii --G-U--G-G-G----U----U----A-G-G-------CU---------- Pilostyles_thurberi --A-U--U-A-A----A----G----U-A----------A---------- Chondrus_crispus --U-U--A-A-A---------------------------A---------- Toxoplasma_gondii --U-U--A-G-A----A---------U-A-U-A----AUA-------A-A Neurospora_crassa --U-A--A-A-G----UG---A----A-G-G-C----AAA-------U-C Podospora_anserina --A-A--A-G-G----G----G----U-U-U------UUU---------U Penicillium_chrysogenum --U-A--A-A-G----U----A----A-G-G-------GA---------- Emericella_nidulans --U-A--A-A-G----U----A----A-G-G--------G---------- Saccharomyces_cerevisiae --A-U--A-G-A----AU---A----A-GCU-AA---AUAC------U-U Williopsis_saturnus_var._mrakii --G-U--A-A-U----A-----------A-A-U----AGA---------- Pedinomonas_minor ----------------A---------A-A-U--------U---------- Plasmodium_falciparum --U-U--U-A-A----A----U----A-G-A-UU---AUA-------A-- Babesia_bovis --G-U--A-A-AUCG-A----G----G-A-U-A----ACU-------A-U Tetrahymena_pyriformis --U-U--A-A------A----AC---A-A-U-A----ACA-------A-A Suillus_sinuspaulianus --A-A--A-A-A----AA---U----U-A-U-U----UAA-------A-U Paramecium_tetraurelia CCU-U--A-G-A----UA---G----G-C-U-A----GGU-------U-U Dictyostelium_discoideum --A-A--U-A-A----UU---U----U-G-G------GAA---------- Physarum_polycephalum --C-C--G-G-AC---UCC--C----U-C-G-GG---AGGC------U-G Pylaiella_littoralis --C-C--A-A-C---------U----C-U-U------------------- Prototheca_wickerhamii --C-U--U-A-A----ACUGCG----G-A-A-U----AAC-------A-U Hydnora_africana --U-U--UAA-G-----A---A----G-G-A-A----AUAACAAAUAA-C Codium_fragile --U-U--G-G-G-----U---A----A-A-G-A----AUA-------A-C Caulerpa_sertularioides --U-U--U-G-G-----A---C----G-A-G-A----AUA-------A-C F --U-U--U-G-G----AG---G----G-G-G-A----AAA---------C F --U-U--U-G------UA---G----A-G-G-G----AUA-------A-C Glaucocystis_nostochinearum --C-U--A-G-G----AGGG-G----G-A-C-A----ACAG------G-A Gloeochaete_wittrockiana --C-A--A-G-G----AG---G----A-G-G-AUA--ACAGUAGGA-A-U Cyanophora_paradoxa --U-U--A-G-G----AG---G----G-G-G------ACAA--------C Cyanophora_paradoxa --U-U--A-G-G-----A---G----G-G-G-G----ACAA--------C Cryptomonas_sp. --U-U--A-G-G----AGGA-G----G-G-G-G----AUAA--------C Palmaria_palmata --U-U--G-G-G-----A---G----G-G-G-A----AUAA--------C Heterosigma_akashiwo --U-U--A-G-G-----A---A----A-G-G-G----ACAA--------C Skeletonema_pseudocostatum --U-U--A-G-G-----A---G----G-G-G-G----AUAA--------C Pylaiella_littoralis --U-U--A-G-G-----A---G----G-G-G-A----AUAA--------C Cyanidium_caldarium --C-U--A-G-G-----A---G----G-G-G-G----AUAA--------C Emiliania_huxleyi --U-U--A-G-G-----A---G----A-A-G-A----AUAA--------C Euglena_gracilis --U-U--G-G-G-----C---G----A-G-G-A----AUAA--------C Anabaena_sp. --U-C--A-G-G---------U----C-G-G-G----GACA------A-C F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 --A-C--A-G-G-----A---C----G-G-G-G----ACAA--------C F -------------------------------------------------- Oscillatoria_agardhii --C-U--A-G-G----AC---G----G-G-G------ACAA--------C Pleurocapsa_sp. --C-G--A-G-G-----A---U----G-G-G-G----ACAA--------C Microcystis_aeruginosa --U-C--A-G-G-----A---C----G-G-G-G----ACAA--------C Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos --U-U--A--------AA---U----A-U-A------CCAA--------- Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae --G-G--U-A-G-----C---G----G-G-G-G----AUAA--------C Streptococcus_pyogenes --G-A--U-A-G-----C---G----G-G-G-G----AUAA--------C Bacillus_anthracis --A-U--A-A-G-----A---C----U-G-G-G----AUAA--------C Bacillus_cereus --A-U--A-A-G-----A---C----U-G-G-G----AUAA--------C Enterococcus_faecalis --A-U--C-A-G-----A---G----G-G-G-G----AUAA--------C Enterococcus_faecium --A-U--C-A-G-----A---A----G-G-G-G----AUAA--------C Listeria_monocytogenes --G-U--A-A-G---------U----U-G-G-G----GAUA------A-C Bacillus_subtilis --G-U--A-A-G-----A---C----U-G-G-G----AUAA--------C Bacillus_subtilis_A --G-U--A-A-G-----A---C----U-G-G-G----AUAA--------C Bacillus_halodurans --G-U--A-A-G-----A---C----U-G-G-G----AUAA--------C Staphylococcus_aureus --A-U--A-A-G-----A---C----U-G-G-G----AUAA--------C Staphylococcus_aureus_N315 --A-U--A-A-G-----A---C----U-G-G-G----AUAA--------C Lactococcus_lactis_subsp._lactis --U-U--U-G-A----GC---G----G-G-G-G----ACAA--------C Streptococcus_pyogenes --U-C--A-U-A----GC---G----G-G-G-G----AUAA--------C Lactobacillus_acidophilus --C-A--U-A-G-----U---C----U-G-G-G----AUAC--------C Mycoplasma_capricolum --U-A--U-A-G-----C---G----G-G-G-G----AUAA--------C Mycoplasma_mycoides --G-A--U-A-G-----C---G----G-G-G-G----AUAA--------C Erysipelothrix_rhusiopathiae_(alpha-P15) --C-G--A-U-G-----C---C----U-G-G-G----AUAA--------C Clostridium_innocuum --C-A--U-G-U----GU---C----C-G-G-G----AUAA--------C Mycoplasma_genitalium ----U--A-U-A----AU---G----G-G-G-G----AUAA--------C Mycoplasma_pneumoniae ----U--A-U-A----AU---G----G-G-G-G----AUAA--------C Mycoplasma_pneumoniae ----U--A-U-A----AU---G----G-G-G-G----AUAA--------C Mycoplasma_gallisepticum --U-A--U-A-G-----U---G----G-G-G-G----AUAA--------C Ureaplasma_urealyticum --U-U--A-A-G---------U----U-G-G-GG---AUAA--------C Ureaplasma_urealyticum --U-U--A-A-G---------U----U-G-G-GG---AUAA--------C Mycoplasma_hyopneumoniae --U-U--U-G-G-----A---C----U-G-G-G----AUAA--------C Fusobacterium_necrophorum --C-U--U-A-G-----A---C----C-G-G-G----ACAA--------C Fusobacterium_nucleatum_subsp._nucleatum --C-A--C-A-G-----C---U----A-G-G-G----ACAA--------C Streptobacillus_moniliformis --C-U--U-A-G-----A---C----U-G-G-G----AUAA--------C Clostridium_botulinum_type_f --C-U--C-A------AA---G----U-G-G-G----GGAUA-----G-C Clostridium_tetani --C-A--A-A-G-----A---G------G-G-G----AAUA------G-C Clostridium_perfringens --C-A--U-A-G-----A---G----U-G-G------AAUA------G-C Clostridium_difficile --C-U--G-U-A----CA---C----A-C-G-G----AUAA--------C Eubacterium_brachy --A-U--A--------CA---A----A-G-G------GAUA------G-C Epulopiscium_sp. --U-U--A-U-A----CU---G----U-G-G-A----AUAA--------C Heliobacterium_chlorum --G-A--G-A-G-----U---G----G-G-G-G----AUAA--------C Glycine_max --A-A--A-C-A----AA---G----U-G-G------CGAA--------C Oenothera_berteroana --G-A--A-C-A----AA---G----U-G-G------CGAA--------C Secale_cereale --U-U--U-G-A----CC---U----A-A-C-G----GCCU--------C Triticum_aestivum --U-U--U-G-A----CC---U----A-A-C-G----GCCU--------C Zea_mays --A-A--C-G-GC---CU---C----C-G-U-UUGCUGGAAUCGGA-A-U Marchantia_polymorpha --C-C--A-A-UC---AA---C----C-G-U-G----AGAA------U-C Nephroselmis_olivacea --A-A--C-A-G----CU---C----G-G-G-------GAA--------- Gluconacetobacter_liquefaciens --A-U--G-G-G-----U---G----G-G-G-G----AUAA--------C Bradyrhizobium_japonicum --U-U--U-G-G-----U---U----C-G-G-A----ACAA--------C Rhodoblastus_acidophilus --U-U--U-G-G-----U---U----C-G-G-A----ACAA--------C Azorhizobium_caulinodans --A-A--U-G-G-----U---G----C-G-G------AAUA------A-C Bartonella_quintana --A-U--C-U------CU---A----C-G-G-A----AUAA--------C Mesorhizobium_loti --A-U--C-U------CU---A----C-G-G-A----ACAA--------C Agrobacterium_tumefaciens --G-U--G-C-C----CU---G----C-G-G------AAUA------G-C Bartonella_bacilliformis --A-U--C-U------CU---A----C-G-G-A----AUAA--------C Bartonella_henselae --A-U--C-U------CU---A----C-G-G-A----AUAA--------C Brucella_melitensis --A-U--U-U-G----CU---A----C-G-G-A----AUAA--------C Rhodobium_orientis --A-U--U-G-G-----U---G----C-G-G-A----AUAA--------C F -------------------------------------------------- Rickettsia_bellii --A-U--C-A-G-----U---A----C-G-G-A----AUAA--------C Rickettsia_felis_URRWXCal2 --A-U--C-A-G-----U---A----C-G-G-A----AUAA--------C Rickettsia_prowazekii --A-U--C-A-G-----U---A----C-G-G-A----AUAA--------C Rickettsia_prowazekii_(str._Madrid_E) --A-U--C-A-G-----U---A----C-G-G-A----AUAA--------C Rickettsia_rickettsii --A-U--C-A-G-----U---A----C-G-G-A----AUAA--------C Acinetobacter_calcoaceticus --U-U--U-A-G-----U---G----G-G-G-G----ACAA--------C Psychrobacter_pacificensis --A-G--U-A-----------G----U-G-G-G----GGAUA-----G-C Chromohalobacter_marismortui --A-G--U-C-G-----U---G----G-G-G-G----AUAA--------C F -------------------------------------------------- Pseudomonas_aeruginosa --G-A--U-A-G-----U---G----G-G-G-G----AUAA--------C Pseudomonas_aeruginosa --G-G--U-A-G-----U---G----G-G-G-G----AUAA--------C Pseudomonas_sp. --G-G--U-A-G-----U---G----G-G-G-G----ACAA--------C Pseudomonas_putida --G-G--U-A-G-----U---G----G-G-G-G----ACAA--------C Coxiella_burnetii --U-G--U-A------GU---G----G-G-G-G----AUAA--------C Methylococcus_capsulatus --U-U--G-U-U----GU---G----G-G-G-G----AUAA--------C Legionella_pneumophila --U-U--G-A-A----GA---G----G-G-G-G----ACAA--------C Legionella_pneumophila --U-U--G-A-A----GA---G----G-G-G-G----ACAA--------C Allochromatium_vinosum --G-G--C-A-G-----A---G----G-G-G-G----AUAA--------C Beggiatoa_sp._1401-13 --U-G--U-A-G-----U---G----G-G-G-G----ACAA--------C Aeromonas_hydrophila --A-G--U-C-G-----A---G----G-G-G-G----AUAA--------C Shewanella_putrefaciens --A-G--U-C-G-----A---G----G-G-G-G----AUAA--------C Citrobacter_freundii ----G--A-U-G----GA---G----G-G-G-G----AUAA--------C Shigella_dysenteriae --U-G--A-U-G----GA---G----G-G-G-G----AUAA--------C Klebsiella_pneumoniae --U-G--A-U-G----GA---G----G-G-G-G----AUAA--------C Plesiomonas_shigelloides --G-A--U-A------GA---G----G-G-G-G----AUAA--------C Yersinia_pestis --U-G--A-U-G----GA---G----G-G-G-G----AUAA--------C F -------------------------------------------------- Shigella_dysenteriae --U-G--A-U-G----GA---G----G-G-G-G----AUAA--------C Escherichia_coli_O157:H7 --U-G--A-U-G----GA---G----A-G-G-G----AUAA--------C Escherichia_coli_O157:H7_EDL933 --U-G--A-U-G----GA---G----G-G-G-G----AUAA--------C Escherichia_coli --U-G--A-U-G----GA---G----G-G-G-G----AUAA--------C Escherichia_coli_K12 --U-G--A-U-G----GA---G----G-G-G-G----AUAA--------C Escherichia_coli --U-G--A-U-G----GA---G----G-G-G-G----AUAA--------C Escherichia_coli --U-G--A-U-G----GA---G----G-G-G-G----AUAA--------C Escherichia_coli --U-G--A-U-G----GA---G----G-G-G-G----AUAA--------C Salmonella_typhimurium --U-G--A-U-G----GA---G----G-G-G-G----AUAA--------C Serratia_marcescens --U-G--A-U-G----GA---G----G-G-G-G----AUAA--------C Edwardsiella_tarda --U-G--A-U-G----GA---G----G-G-G-G----AUAA--------C Proteus_vulgaris --C-G--A-U-A----GA---G----G-G-G-G----AUAA--------C Vibrio_cholerae --G-G--U-A------GA---G----G-G-G-G----AUAA--------C Vibrio_cholerae --G-G--U-A------GA---G----G-G-G-G----AUAA--------C Vibrio_cholerae --G-G--U-A------GA---G----G-G-G-G----AUAA--------C Vibrio_cholerae --G-G--U-A------GA---G----G-G-G-G----AUAA--------C Vibrio_cholerae --G-G--U-A------GA---G----G-G-G-G----AUAA--------C Vibrio_cholerae --G-G--U-A------GA---G----G-G-G-G----AUAA--------C F -------------------------------------------------- Haemophilus_influenzae --U-A--U-G-G-----A---G----G-G-G-G----AUAA--------C Haemophilus_influenzae --U-U--A-U-G----GA---G----G-G-G-G----AUAA--------C Haemophilus_influenzae --U-U--A-U-G----GA---G----G-G-G-G----AUAA--------C Haemophilus_influenzae --U-U--A-U-G----GA---G----G-G-G-G----AUAA--------C Haemophilus_influenzae_(operons_A-F) --U-U--A-U-G----GA---G----G-G-G-G----AUAA--------C Pasteurella_multocida --U-A--U-G-G-----A---G----G-G-G-G----AUAA--------C Pasteurella_multocida --U-A--U-G-G-----A---G----G-G-G-G----AUAA--------C Xanthomonas_albilineans --U-U--U-C------GU---G----G-G-G-G----AUAA--------C Xanthomonas_campestris --U-U--U-C------GU---G----G-G-G-G----AUAA--------C Xylella_fastidiosa --U-A--U-C------GU---G----G-G-G-G----AUAA--------C Dichelobacter_nodosus --U-U--A-U-G----GU---G----G-G-G-G----ACAA--------C Francisella_tularensis --A-U--U-U-G-----A---G----G-G-G-G----AUAC--------C Bordetella_parapertussis --A-G--U-A------GC---G----G-G-G-G----AUAA--------C Bordetella_pertussis --A-G--U-A------GC---G----G-G-G-G----AUAA--------C Bordetella_bronchiseptica --A-G--U-A------GC---G----G-G-G-G----AUAA--------C unidentified_proteobacterium --A-G--U-A-----------G----U-G-G-GG---GAUA------G-C Burkholderia_mallei --U-G--U-A-----------G----U-G-G-GG---GAUA------G-C Burkholderia_sp. --U-G--U-A-----------G----U-G-G-GG---GAUA------G-C F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae --G-G--U-A------GC---G----G-G-G-G----AUAA--------C Comamonas_testosteroni --A-G--U-A------GU---G----G-G-G-G----AUAA--------C Desulfovibrio_desulfuricans --U-U--A-U-G-----A---U----C-G-G-G----AUAA--------C Myxococcus_xanthus --G-A--G-U-G-----C---U----C-G-G-G----AUAA--------C Deferribacter_thermophilus --C-G--C-A-G-----A---C----C-G-G-G----AUAA--------C Borrelia_burgdorferi --A-U--G-A-G-----A---U----G-G-G-G----AUAA--------C Borrelia_burgdorferi --A-U--G-A-G-----A---U----G-G-G-G----AUAA--------C Borrelia_hermsii --A-U--G-A-G-----A---U----G-G-G-G----AUAA--------C Spirochaeta_aurantia --G-A--C-G-G-----A--------U-G-G-G----GAUA------G-C Treponema_pallidum_(rRNA_A) --U-U--G-A-G-----A---U----G-G-G-G----AUAG--------C Leptonema_illini --C-A--C-G-G----AU---G----G-G-G-G----AUAA--------C Leptospira_interrogans --C-U--G-A-G-----U---C----U-G-G-G----AUAA--------C Chlamydia_trachomatis_D/UW-3/CX --U-U--A-A-C---------U----U-G-G-G----AAUA------A-C Chlamydia_trachomatis_L2/434/BU --U-U--A-A-C---------U----U-G-G-G----AAUA------A-C Chlamydia_muridarum --U-U--A-A-C---------U----U-G-G-G----AAUA------A-C Chlamydophila_pneumoniae_AR39 --U-C--A-A-------C---U----U-G-G-GG---AUAA--------C Chlamydophila_pneumoniae --U-C--A-A-------C---U----U-G-G-GG---AUAA--------C Chlamydophila_pneumoniae_J138 --U-C--A-A-------C---U----U-G-G-GG---AUAA--------C F -------------------------------------------------- Chlamydophila_psittaci --U-C--A-A-------C---U----U-G-G-G----AAUA------A-C Deinococcus_radiodurans --A-G--A-A-G-----U---C----A-U-G-A----AUAA--------C Deinococcus_radiodurans --A-G--A-A-G-----U---C----A-C-G-A----AUAA--------C Bacteroides_fragilis --U-U--U-A------CU---C----G-G-G------GAUA------G-C Porphyromonas_gingivalis --U-A--C-A-G-----A---G----G-G-G-G----AUAA------C-C Prosthecochloris_vibrioformis --A-C--A-G-G-----A---C----C-G-G-C----AUAA--------C Campylobacter_jejuni --U-A--C-A------CA---A----G-A-G-G----ACAA--------C Campylobacter_jejuni --U-A--C-A------CA---A----G-A-G-G----ACAA--------C Campylobacter_sputorum --U-U--A-U-A----GC---A----U-U-U-A----AAAAUA----C-A F -------------------------------------------------- Helicobacter_pylori_J99 --C-U--U-A-G-----U---U----U-G-G------GAUA------G-C Helicobacter_pylori --C-U--U-A-G-----U---U----U-G-G------GAUA------G-C Acidobacterium_capsulatum --C-U--C--------GA---G----U-G-G-GG---AAUA------A-C Holophaga_foetida --U-U--U-U-----------G----U-G-G-GG---AAUA------A-C Arthrobacter_globiformis --U-U--G-A------CU---C----U-G-G-G----AUAA--------G Micrococcus_luteus --U-U--A-A------CU---C----U-G-G-G----AUAA--------G Frankia_sp. --C-C--G-A-G----CU---C----U-G-G------AAUA------A-C Streptomyces_bottropensis --U-U--C-A------CU---C----U-G-G-G----ACAA--------G Streptomyces_scabiei --U-U--C-A------CU---C----U-G-G-G----ACAA--------G Streptomyces_neyagawaensis --U-U--C-A------CU---C----U-G-G-G----ACAA--------G F -------------------------------------------------- Streptomyces_sp. --U-G--C-A------CU---C----U-G-G-G----ACAA--------G Streptomyces_acidiscabies --U-U--C-A------CU---C----U-G-G-G----ACAA--------G Streptomyces_griseus --U-U--C-A------CU---C----U-G-G-G----ACAA--------G Streptomyces_ornatus --U-U--C-A------CU---C----U-G-G-G----ACAA--------G Streptomyces_subrutilus --U-U--C-A------CU---C----U-G-G-G----ACAA--------G Streptomyces_bikiniensis --U-U--C-A------CU---C----U-G-G-G----ACAA--------G Streptomyces_galbus --U-U--C-A------CU---C----U-G-G-G----ACAA--------G Streptomyces_hygroscopicus --U-U--C-A------CU---C----U-G-G-G----ACAA--------G Streptomyces_lincolnensis --U-U--C-A------CU---C----U-G-G-G----ACAA--------G Streptomyces_coelicolor --U-U--C-A------CU---C----U-G-G-G----ACAA--------G Streptomyces_tendae --U-G--C-A------CU---C----U-G-G-G----ACAA--------G Streptomyces_ambofaciens --U-G--C-A------CU---C----U-G-G-G----ACAA--------G Streptomyces_eurythermus --U-U--C-A------CU---C----U-G-G-G----ACAA--------G Streptomyces_nodosus --U-G--C-A------CU---C----U-G-G-G----ACAA--------G Streptomyces_sampsonii --U-G--C-A------CU---C----U-G-G-G----ACAA--------G Streptomyces_glaucescens --U-G--C-A------CU---C----U-G-G-G----ACAA--------G Streptomyces_pseudogriseolus --U-G--C-A------CU---C----U-G-G-G----ACAA--------G Streptomyces_caelestis --U-G--C-A------CU---C----U-G-G-G----ACAA--------G Streptomyces_bluensis --U-G--C-A------CU---C----U-G-G-G----ACAA--------G Streptomyces_espinosus --U-G--C-A------CU---U----C-G-G-G----ACAA--------G Streptomyces_mashuensis --U-G--C-A------CU---C----U-G-G-G----ACAA--------G Streptomyces_rimosus --U-G--C-G------CU---C----U-G-G-G----ACAA--------G Streptomyces_limosus --U-G--C-A------CU---C----U-G-G-G----ACAA--------G Streptomyces_odorifer --U-G--C-A------CU---C----U-G-G-G----ACAA--------G Streptomyces_felleus --U-G--C-A------CU---C----U-G-G-G----ACAA--------G Streptomyces_albidoflavus --U-G--C-A------CU---C----U-G-G-G----ACAA--------G Streptomyces_gougerotii --U-G--C-A------CU---C----U-G-G-G----ACAA--------G Streptomyces_rutgersensis --U-G--C-A------CU---C----U-G-G-G----ACAA--------G Streptomyces_intermedius --U-G--C-A------CU---C----U-G-G-G----ACAA--------G F -------------------------------------------------- Streptomyces_thermoviolaceus --U-G--C-A------CU---C----U-G-G-G----ACAA--------G F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus --U-G--C-A------CU---C----U-G-G-G----AUAA--------C Streptomyces_megasporus --U-G--C-A------CU---C----U-G-G-G----AUAA--------C Streptomyces_thermolineatus --U-G--C-A------CU---C----U-G-G-G----ACAA--------C Mycobacterium_tuberculosis --U-G--C-A------CU---U----C-G-G-G----AUAA--------G Mycobacterium_tuberculosis --U-G--C-A------CU---U----C-G-G-G----AUAA--------G Mycobacterium_avium --U-G--C-A------CU---U----C-G-G-G----AUAA--------G Mycobacterium_leprae --U-G--C-A-C----UU---C----A-G-G-G----AUAA--------G Mycobacterium_leprae --U-G--C-A-C----UU---C----A-G-G-G----AUAA--------G F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides --C-G--U-A------CU---U----C-G-G-G----AUAA--------G Rhodococcus_erythropolis --U-G--C-A------CU---U----C-G-G-G----AUAA--------G Corynebacterium_diphtheriae --C-G--U-A------CU---U----C-G-G-G----AUAA--------G Actinomyces_israelii --C-U--C-A-C-----U---U----C-U-G-G----AUAA--------C Brachyspira_hyodysenteriae --U-A--G-A-G-----U---G----G-G-G-G----AUAA--------C Geotoga_subterranea --A-A--C---G----GA---C----U-G-G-G----AUAG--------C Petrotoga_miotherma --C-G--A-G-G-----A---C----A-G-A-G----AUAG--------C Brevinema_andersonii --C-A--U-A-G----GA---C----U-G-G-G----AUAG--------C Herpetosiphon_aurantiacus --C-G--G-U-G-----U---G----G-G-G-G----AUAA--------C F -------------------------------------------------- Aquifex_aeolicus --C-C--A-G-G-----A---G----G-G-G-G----AUAA--------C Aquifex_pyrophilus --C-C--A-G-G-----A---G----G-G-G-G----AUAA--------C Thermotoga_maritima --U-C--C-G-G-----A---G----G-G-G-G----AUAA--------C Thermotoga_maritima --U-C--C-G-G-----A---G----G-G-G------GAUA------A-C F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus --G-G--A-A-G-----A---G----G-G-G-G----ACAA--------C F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus --G-G--A-A-G-----A---G----G-G-G-G----ACAA--------C Thermus_aquaticus --G-G--A-A-G-----A---G----G-G-G-G----ACAA--------C Thermomicrobium_roseum --G-G--G-U-G-----C---G----G-G-G-G----AUAA--------C Pirellula_marina --C-U--C-G-G----GU---U----U-G-G-G----AUAG--------C Pirellula_staleyi --U-U--C-G-G----GU---C----U-G-G-G----AUAG--------C Planctomycetaceae_Schlesner_670 --C-U--A-G-G-----A---C----C-G-G-G----AUAG--------C Gemmata_obscuriglobus --C-G--G-G-G----GU---U----C-G-G-G----AUAG--------C Isosphaera_pallida --C-G--A-G-G-----U---U----G-G-G------CAUA------G-C Pyrococcus_abyssi --U-C--G-G-G-----A---G----G-G-G-G----AUAA--------C Pyrococcus_horikoshii --U-C--G-G-G-----A---G----G-G-G-G----AUAA--------C Pyrococcus_furiosus --C-U--C-G-G----GA---G----G-G-G-G----AUAA--------C Thermococcus_celer --U-C--G-G-G-----A---G----G-G-G-G----AUAA--------C Archaeoglobus_fulgidus --U-C--G-G-G-----U---G----G-G-G-G----AUAA--------C Nanoarchaeum_equitans --U-C--G-G-G-----A---C----G-G-G-G----AUAA--------C Aeropyrum_pernix_(str._K1) --U-C--G-G-G-----A---C----G-G-G-G----AUAAC-----C-C Pyrodictium_occultum --U-C--G-G-G-----A---C----G-G-G-G----AUAA--------C Thermoproteus_tenax --U-C--G-G-G-----A---G----G-G-G-G----ACAA--------C Sulfolobus_acidocaldarius --U-C--G-G-G-----A---C----G-G-G-G----AUAA--------C Sulfolobus_solfataricus --U-C--G-G-G-----A---C----G-G-G-G----AUAA--------C Bacteroides_fragilis --U-G--A-G-G-----A---G----G-G-A-G----AUAA--------C F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum --U-U--A-G-G-----A---C----U-G-G-G----AUAA--------C Methanococcus_vannielii --U-C--A-G-G-----U---G----G-A-G-C----AUAA--------C F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. --U-G--U-G-G-----A---C----G-G-G------AAUA------C-U Natronorubrum_bangense --U-A--U-G-G-----A---U----C-C-G-G----AUAA--------C Natronobacterium_innermongoliae --U-A--U-G-G-----A---U----C-C-A-G----ACAA--------C Haloferax_volcanii --U-A--C-A-G-----A---G----A-A-C-G----AUAA--------C Methanospirillum_hungatei --U-G--A-A-G-----A---G----G-A-G-G----AUAA--------U Picrophilus_torridus_DSM_9790 --U-C--G-G-G-----A---A----G-G-G-C----AUAA--------C Thermoplasma_acidophilum --C-U--C-A-G----GC---G----G-G-G-C----AUAA--------C Giardia_ardeae --G-G--C-U-A----GC----------C-G-G----ACAC--------C Giardia_intestinalis ----G--C-C-G------------------G------ACAC--------C Giardia_muris --C-C--G-G-G---------G----G-U-G------AAGG------C-U Amblyospora_bracteata --A-G--C-A-C----GG---G----A-G-G-G----AUAA--------C Glomus_sp._W3349 --U-C--G-A-U-----G---G----U-A-G-G----AUAGAG----G-C Scutellospora_cerradensis --U-C--G-A-U-----G---G----U-A-G------GAUA------G-A Glomus_intraradices --U-U--C-G-A---------U----G-G-U------AGGA--------U Smittium_culisetae --G-G--U-A-------A---C----G-G-GUA----ACGG------G-G Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus --U-U--C-G-A---------U----G-G-U------AGGA--------U Tilletia_caries --U-C--G-A-U-----G---G----U-A-G------GAUA------G-A Mucor_circinelloides_f._lusitanicus --U-U--C-U-GCC--CUA--U----CAU-G-G----UUGAGA----U-U Mucor_racemosus --U-U--C-U-GCC--CUA--U----CAU-G-G----UUGAGA----U-U Rhizopus_oryzae --U-U--C-U-GCC--CUA--U----CAU-G-G----UUGAGA----U-U Mytilus_edulis --U-C--G-A-U-----G---G----U-A-C-G----UGAU------A-U Placopecten_magellanicus --U-C--G-A-U-----G---G----U-A-C-G----UGCU------A-U Echinococcus_granulosus --UGC--G-G-G----UG--------C-A-G------CUCAC-----U-G Drosophila_melanogaster --A-C--G-G-GG---AA---U----C-A-G------GGUU--------C Crossodonthina_koreana --U-C--G-A-U---------G----G-U-A-G----GUUAU-----G-C Androctonus_australis --U-C--G-A-U-----G---G----U-A-G-G----UUAU------G-C Okanagana_utahensis --G-G--U-U-C----GAUU-C----C-G-G------AGAG------G-G Artemia_salina --U-C--G-A-U---------G----G-U-A-G----GCUAU-----G-C Mus_musculus --U-U--C-G-A---------U----G-G-U------AGUC--------G Rattus_norvegicus --U-U--C-G-A---------U----G-G-U------AGUC--------G Homo_sapiens --U-U--C-G-A---------U----G-G-U------AGUC--------G Oryctolagus_cuniculus --U-U--C-G-A---------U----G-G-U------AGUC--------G Xenopus_borealis --U-C--G-A-U----GG---U----A-C-U------UUCU------G-- Xenopus_laevis --U-C--G-A-U----GG---U----A-C-U------UUCU------G-- Acanthamoeba_castellanii --U-A--U-U-A----GG---U----U-A-A-AA---ACCA------G-C Balamuthia_mandrillaris --C-G--G-A-G----AA---U----U-A-G------GGUU--------C Plasmodium_falciparum --U-U--U-U-G----AU---G----U-U-A-G----GGUA------U-U Plasmodium_falciparum --G-U--A-U-G----UA---U----C-A-U-------UAA--------- Plasmodium_vivax --C-U--A-U-G-----A---C----G-G-GUA----ACGG------G-G Plasmodium_vivax --A-A--G-U-G----CG---U----A-C-U-U----GUUA------A-U Plasmodium_vivax --UCG--A-U-U---------C----C-G-G------AGAG------G-G Entamoeba_histolytica --U-AG-U-A-C----AA---A----A-U-G-G----CCAA------U-U Ichthyophonus_hoferi --U-UC-G-G-U----GG--------U-A-A-G----GUAU------U-G Dermocystidium_sp. --U-C--G-A-U-----G---G----U-A-A------GGUA------U-U Sphaerothecum_destruens --U-C--G-A-U-----G---G----U-A-A------GGUA------G-U Acanthocoepsis_unguiculata --U-U--C-G-A----CG---G----U-A-G-G----GUAU--------U Diaphanoeca_grandis --U-C--G-A-U-----G---G----U-A-A------GGUA------G-U Allomyces_macrogynus --G-U--C-G-A----UG---G----U-A-G-G----AUAG------A-- Blastocladiella_emersonii --U-U--C-G-A---------C----G-G-U------AGGA--------U Candida_albicans --U-G--U-U-U----GG---A----A-G-G-G----AUGU------A-U Saccharomyces_cerevisiae --U-C--G-A-U-----G---G----U-A-G------GAUA------G-U Neurospora_crassa --U-U--C-G-A----CG--------G-C-U-G----GGUC--------U Podospora_anserina --U-U--C-G-A----CG--------G-C-U-G----GGUC--------U Coccidioides_immitis --U-C--G-A-U-----G---G----U-A-G------GAUA------G-U Leishmania_major --A-C--G-C-C----CA---G----C-G-A------AUGAAU----G-A Trypanosoma_cruzi --G-A--C-G-U----CC---A----G-C-G-A----AUGAAU----G-A Trypanosoma_brucei --A-A--U-A-G----------------A-G------CCGA------C-C Pneumocystis_carinii --U-C--G-A-U-----G---G----U-A-G------GAUA------G-A Cryptococcus_neoformans_var._neoformans --U-C--G-A-U-----G---G----U-A-G------GAUA------G-A fungal_contaminant_of_QPX_isolate --U-C--G-A-U-----G---G----U-A-G-A----GUAG------U-G Ustilago_maydis --U-C--G-A-U-----G---G----U-A-G------GAUA------G-A Mnemiopsis_leidyi --U-U--C-U-G----CC---C----U-A--------UCAA--------C Tripedalia_cystophora --U-C--G-A-U-----G---G----U-A-A------GGUA------G-U Microciona_prolifera --U-C--G-A-U-----G---G----U-A-C------GGUA------G-U Psorospermium_haeckeli --U-U--C-G-A----UG---G----U-A-A-G----GUAU--------U Euglypha_rotunda --U-C--G-A-U----GG---U----A-G-U------GUAA------A-G Paulinella_chromatophora --U-C--G-A-CGG--UA---G----U-G-U------AGAG------GAC Antirrhinum_majus --U-C--G-A-U-----G---G----U-A-G------GAUA------G-U Sesamum_indicum --U-C--G-A-U-----G---G----U-A-G------GAUA------G-U Digitalis_grandiflora --U-C--G-A-U-----G---G----U-A-G------GAUA------G-U Plantago_lanceolata --U-C--G-A-U-----G---G----U-A-G------GAUA------G-U Nicotiana_tabacum --U-C--G-A-U-----G---G----U-A-G------GAUA------G-U Arabidopsis_thaliana --U-C--G-A-U-----G---G----U-A-G------GAUA------G-U Sinapis_alba --U-C--G-A-U-----G---G----U-A-G------GAUA------G-U Solanum_tuberosum --U-C--G-A-U-----G---G----U-A-G------GAUA------G-U Fragaria_x_ananassa --U-C--G-A-U-----G---G----U-A-G------GAUA------G-U Glycine_max --U-C--G-A-U-----G---G----U-A-G------GAUA------G-U Oryza_sativa --U-C--G-A-U-----G---G----U-A-G-G----AUAGGG----GCC Zea_mays --U-C--G-A-U-----G---G----U-A-G-G----AUAGGG----GCC F -------------------------------------------------- Genicularia_spirotaenia --U-C--G-A-U-----G---G----U-A-G------GAUA------G-A F -------------------------------------------------- Cyanophora_paradoxa --U-C--G-A-U-----G---G----U-A-G-G----AUAGAG----GCC Glaucocystis_nostochinearum --U-C--G-A-U-----G---G----U-A-G------GAUA------G-A Gloeochaete_wittrockiana --U-C--G-A-U-----G---G----U-A-G-G----AUAGGG----GCC FChlorella'_luteoviridis --U-C--G-A-U-----G---G----U-A-G------GAUA------G-A Oxytricha_longa --U-C--G-A-U----GG---U----A-G-U------GUAU------U-G Paraurostyla_weissei --U-C--G-A-U----GG---U----A-G-U------GUAU------U-G Cyrtohymena_citrina --U-C--G-A-U----GG---U----A-G-U------GUAU------U-G Gastrostyla_steinii --U-C--G-A-U----GG---U----A-G-U------GUAU------U-G Pleurotricha_lanceolota --U-C--G-A-U----GG---U----A-G-U------GUAU------U-G Onychodromus_quadricornutus --U-C--G-A-U---------G----G-U-A-GU---GUAU------U-G Stylonychia_lemnae --U-C--G-A-U----GG---U----A-G-U------GUAU------U-G Stylonychia_mytilus --U-C--G-A-U----GG---U----A-G-U------GUAU------U-G Engelmanniella_mobilis --U-C--G-A-U-----G---G----U-A-G-U----GUAU------U-G Oxytricha_granulifera --U-C--G-A-U-----G---G----U-A-G-U----GUAU------U-G Oxytricha_granulifera --U-C--G-A-U-----G---G----U-A-G-U----GUAU------U-G Uroleptus_gallina --U-C--G-A-U----GG---U----A-G-U------GUAU------U-G Uroleptus_pisces --U-C--G-A-U----GG---U----A-G-U------GUAU------U-G Paruroleptus_lepisma --U-C--G-A-U----GG---U----A-G-U------GUAU------U-G Urostyla_grandis --U-C--G-A-U-----G---G----U-A-G-U----GUAU------U-G Balantidium_coli --U-A--A-G-------G---U----C-G-U------AUUU--------A Euplotes_aediculatus --A-U--U-A------GG----------G-U------UCGA--------U Tetrahymena_thermophila --C-GA-U-G-G----UA---G----U-G-U------AUUG--------G Bangia_sp._(Northwest_Territories/NWT) --U-C--G-A-U-----G---G----U-A-G------AGUA------U-U Bangia_sp._(Virgin_Islands/VIS7) --U-C--G-A-U-----G---G----U-A-G-G----GUAU------U-G Erythrotrichia_carnea --U-C--G-A-U-----G---G----U-A-G-G----GUAG------U-G Rhodochaete_parvula --U-C--G-A-U----GG---U----A-G-G------GUAG------U-G Compsopogon_coeruleus --U-C--G-A-U-----G---G----U-A-G------GGUA------G-U Porphyridium_aerugineum --U-C--G-A------CG---G----U-A-G-G----GUAGU-----G-G Rhodella_maculata --U-G--G-A-UGG--UA---A----G-G-U-A----GUGG------C-U Aulacoseira_ambigua --C-G--G-A-U-----G---G----U-A-G------GGUA------U-U Aulacoseira_baicalensis --C-G--G-A-U-----G---G----U-A-G-A----GUAU------U-G Stephanopyxis_nipponica --U-G--G-A-U-----G---G----U-A-G-G----GUAU------U-G Coscinodiscus_radiatus --U-G--G-A-U-----G---G----U-A-G-G----GUAU------U-G Corethron_criophilum --U-G--G-A-U-----G---G----U-A-G-G----GUAU------U-G Amphora_cf._capitellata --U-G--G-A------CG---G----U-A-A------GGUA------U-U Sellaphora_pupula_f._capitata --U-G--G-A------AG---G----U-A-G------GUUC------U-U Thalassiosira_antarctica --U-G--G-A-U-----G---G----U-A-G-G----GUAU------U-G Encyonema_triangulatum --U-G--G-A-U-----G---G----U-A-G-G----GUAU------U-G Achnanthes_bongranii --U-G--G-A-U-----G---G----U-A-G-G----GUAU------U-G F -------------------------------------------------- Diatoma_tenue --U-G--G-A-U-----G---G----U-A-G-G----GUAU------U-G Grammatophora_marina --U-G--A-A-U-----C---G----U-A-U-G----GUAU------U-- Thalassionema_sp._p474 --U-G--G-A-U-----G---G----U-A-G-G----GUAU------U-G Rhaphoneis_belgicae --U-G--G-A-U-----G---G----UAG-G------GUAU------U-G Undatella_sp._p446 --U-G--G-A-U-----G---G----U-A-G-G----AUAU------U-U Cymatosira_belgica --U-G--G-A-U-----G---G----U-A-G-G----GUAU------U-G Odontella_sinensis --U-G--G-A-U-----G---G----U-A-G-G----GUAU------U-G Ditylum_brightwellii --U-G--G-A-U-----G---G----U-A-G-G----GUAU------U-G Lithodesmium_undulatum --U-G--G-A-U-----G---G----U-A-G-G----GUAU------U-G Thalassiosira_eccentrica --U-G--G-A-U-----G---G------U-A-GU---GUAU------U-G Thalassiosira_pseudonana --U-G--G-A-U-----G---G------U-A-GU---GUAU------U-G Skeletonema_costatum --UGG--G-A-U-----G---G------U-A-GU---GUAU------U-G Pleurosira_cf._laevis --U-G--G-A-U-----G---G----U-A-G-G----GUAU------U-G Lauderia_borealis --CCG--G-A------CG---G----U-A-U-G----GUAU--------U F -------------------------------------------------- Bolidomonas_mediterranea --U-G--G-A-U-----G---G----U-A-G-G----GUAU------U-G Bolidomonas_pacifica --U-G--G-A-U-----G---G----U-A-G-G----GUAU------U-G Labyrinthuloides_minuta --U-C--G-A-U-----G---G------U-A-GU---GUAU------U-G Leptocylindrus_danicus --U-G--G-A------CG---G----U-A--------GUGU------A-U Chaetoceros_sp. --U-GACG-G-U-----A---G----U-G-U--------AU------U-G Aphanomyces_invadans --U-G--G-A-U-----G---G----U-A-G------GAUA------U-G Lagenidium_giganteum --U-G--G-A-U-----G---G----U-A-G------GAUA------U-G Melosira_varians --U-G--G-A-U-----G---G----U-A-G-G----GUAU------U-- Blastocystis_hominis --U-C--G-A-U-----G---G----U-A-G------UAUA------U-G Perkinsus_marinus --U-G--G-A------CG---G----U-A-G-G----GUAU------U-G Toxoplasma_gondii --U-C--G-A------CG---G----U-A-C-------UGU------A-U Alexandrium_fundyense --U-C--G-A------CG---G----U-A--------AGGU------A-U Babesia_bigemina --U-A--G-G-G-----C--------U-A-A-U----ACAA------G-U Babesia_canis --U----G-A------CG---G----U-A-G------GGUA------U-U Babesia_sp._'Oklahoma_dog' --U----G-A------CG---G----U-A-G------GGUA------U-U Babesia_microti --U-G--G-A------CG---G----U-A-G------GGUA------U-U Babesia_microti --U-G--G-A------CG---G----U-A-G------GGUA------U-U Babesia_microti --U-G--G-A------CG---G----U-A-G------GGUA------U-U Babesia_microti --U-G--G-A------CG---G----U-A-G------GGUA------U-U Babesia_microti --U-G--G-A------CG---G----U-A-G------GGUA------U-U Babesia_rodhaini --U-G--G-A------CG---G----U-A-G------GGUA------U-U Babesia_gibsoni --U-G--G-A------CG---G----U-A-G------GGUA------U-U Babesia_bovis --U-U--G-A------GG--------U-U-A--------UU------A-C Jakoba_libera --U-C----G-U----CG---G----U-A-G-G----GUAU------U-- Reclinomonas_americana --U-C----G-U----CG---G----U-A-C-G----GUAU--------U Bonamia_ostreae --U-U--G-A------CG---G----U-A-G-G----GUAU------U-G Audouinella_dasyae --U-C--G-A-U-----G---G----U-A---A----GGUA------U-U Audouinella_hermannii --U-C--G-A-U-----G---G----U-A---A----GGUA------U-U Nemalion_helminthoides --U-C--G-A-U-----G---G----U-A---A----GGUA------U-U Batrachospermum_gelatinosum --U-C--G-A-U-----G---G----U-A---A----GGUA------U-U Nemalionopsis_tortuosa --U-C--G-A-U-----G---G----U-A---A----GGUA------U-U Thorea_hispida --U-C--G-A-U-----G---G----U-A---A----GGUA------U-U Thorea_violacea --U-C--G-A-U-----G---G----U-A---A----GGUA------U-U Thorea_violacea --U-C--G-A-U-----G---G----U-A---A----GGUA------U-U Thorea_violacea --U-C--G-A-U-----G---G----U-A---A----GGUA------U-U Nemalionopsis_shawii --U-C--G-A-U-----G---G----U-A---A----GGUA------U-U Balbiania_investiens --U-C--G-A-U-----G---G----U-A---A----GGUA------U-U Batrachospermum_macrosporum --U-C--G-A-U-----G---G----U-A---A----GGUA------U-U Ahnfeltia_plicata --U-U--G-A-C----GU---G----A-A--------GGUA------U-U Corallina_officinalis --U-C--G-A-U-----G---G----U-A-A-G----GUAG------U-G Rhodogorgon_carriebowensis --U-C--G-A-U-----G---G----U-A-A-G----GUAG------U-G Bonnemaisonia_hamifera --U-G--G-A-U-----G---G----U-A---A----GGUA------U-U Gelidium_vagum --U-G--G-A-U-----G---G----U-A---A----GGUA------U-U Chondrus_crispus --U-G--G-A-U-----G---G----U-A---A----GGUA------U-U Halymenia_plana --U-G--G-A-U-----G---G----U-A-A-G----GUAG--------U Rhodymenia_leptophylla --U-G--G-A-U-----G---G----U-A---A----GGUA------U-U Plocamiocolax_pulvinata --U-G--G-A-U-----G---G----U-A---A----GGUA------U-U Ceramium_rubrum --U-G--G-A-U-----G---G----U-A---A----GGUA------U-U Gracilariopsis_sp. --U-G--G-A-U-----G---G----U-A----------AG------G-U Bostrychia_moritziana --UCU--G-A-C----CU---A----U-C-A-A----CUAUG-----A-U Hildenbrandia_rubra --U-G--G-A-U-----G---G----U-A---A----GGUA------U-U Dixonielloa_grisea --U-G--G-A-U----UG--------U-A-G-G----GUAG------U-G Naegleria_fowleri --G-A--G-A-G----AU--------C-G-C-U----ACCA--------C Naegleria_gruberi --G-A--G-A-A----AU--------C-G-C-U----ACCA--------C Hexamita_sp. --U-C--G------------------U-G-C-------UUC------G-U Tritrichomonas_foetus --A-G--G-G-U----CU--------U-U-A-C----CUAG--------- Amblyospora_khaliulini --U-------------CG--------U-G-----------U--------- Edhazardia_aedis --C-------------CC----------A-C-------UUU--------- Amblyospora_connecticus ----------------CC--------------------CAU--------- Intrapredatorus_barri --U-C--U-A------CC-------------------------------- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. ----------------------------------------A--------- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii --A-G--C-A-A----GG----------G-G------AUAA------C-C Weiseria_palustris --G-C--C-A------AU---G------G--------AUAA------C-C Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani --U-U--A-U-U--------------------------UGG--------- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae --C-U--G-C------GU-------------------GUGU--------- Thelohania_solenopsae --U-A--C-A------UA----------A--------AUGG--------- Visvesvaria_acridophagus --U-C--U-A-C----UA--------A-A-G------GAUA------A-C Bacillidium_sp. --U-A--A-A-------U---G---------------GUAA------C-C Pseudonosema_cristatellae --C-G--U-A-G----UA---UGUAUA-C-G-G----AUAA--------C Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum --U-U--C-U-G----AG--------A-C-G-G----ACAA------C-C Pleistophora_mirandellae --U-C--C-U-G----AU--------G-U-G-G----ACAA------C-C Trachipleistophora_hominis --U-C--C-C-G----GU--------G-U-G-G----ACAA------C-C Vavraia_culicis --U-C--C-C-G----GU--------G-U-G-G----ACAA------C-C F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii --U-C--U-A-G----AA--------C-C-G-G----ACAA--------C F -------------------------------------------------- Dictyocoela_gammarellum --U-U--C-U-G----UG--------A-C-G-G----ACAA--------C Microsporidium_prosopium --U-C--U-U-A----GA--------G-C-G-G----ACAA------C-C Antonospora_scoticae ----C--C-G-C----GG--------C-A-G------AAGA--------- Paranosema_whitei --C-G--G-CAC---AGA---C----A-A-G-G----AUAA--------C #=GC SS_cons ..<.<..<.<.<.........<....<.<.<.<..............<.< Cynomorium_coccineum -G-U--CU-G------GAAAU-G---G----C--C--GA----AAAUA-C Cytinus_ruber -A-G--UU-G------GAAAC-G---U----C--U--GC----UAAUA-C Nicotiana_tabacum -A-G--CU-G------GAAAC-G---G----C--U--GC----UAAUA-C Spinacia_oleracea -A-G--CU-G------GAAAC-G---G----C--U--GC----UAAUA-C Zea_mays -A-A--CU-G------GAAAC-G---G----U--U--GC----UAAUA-C Marchantia_polymorpha -A-G--CU-G------GAAAC-G---G----U--U--GC----UAAUA-C Ricinus_communis -A-G--CU-G------GAAAC-G---G----C--U--GC----UAAUA-C F -C-A--UU-G------GAAAC-G---A----U--G--GC----UAAUA-C Prototheca_wickerhamii -U-A--CU-G------GAAAC-G---G----U--A--GC----UAAUA-C Pedinomonas_minor -U-G--UU-G------GAAAC-G---G----C--A--GC----UAAUA-C Nephroselmis_olivacea -G-U--CU-G------GAAAC-A---G----U--C--GC----UAAUA-C Pyramimonas_parkeae -A-G--CU-G------GAAAC-G---G----C--U--GC----UAAUA-C Chlamydomonas_reinhardtii -A-U--UG-G------GAAAC-U---G----U--U--GC----UAAUA-C Acanthamoeba_castellanii -------------------A-----------------------AAUU--C Pilostyles_thurberi -G-G---C-G--------AAC-G---G----G--U--------GAGUA-A Chondrus_crispus ---A--AU-----------U--G---U----U-----------AAAU--- Toxoplasma_gondii -A-A--UU--------UAAU--A---A----U--U--U-------AUA-A Neurospora_crassa -C-U--UC-A-------UAUU-GCAAA----A--G--GA----UA----U Podospora_anserina -A-A--UU-A------AAAGU-G---G----UG-U--AC----AGGU--G Penicillium_chrysogenum -----------------AAA-----------------------AAUC--C Emericella_nidulans ----------------GAAA-----------------------AAUC--C Saccharomyces_cerevisiae AA-U--AU-A------UUAUU-A---U----A--U--AA----AAAUA-A Williopsis_saturnus_var._mrakii -A-U--UA-G--------AAC-U---A----A--U--------AUAUC-U Pedinomonas_minor ----------------GAAU-----------------------UAAU--A Plasmodium_falciparum -A-U--UU--------UAUU--A---A----A--U--------AAUAA-U Babesia_bovis -A-A--GU-G--------UGC-A---U----U--UU-AU----GUGU--G Tetrahymena_pyriformis -U-G--CU-A------UAAAA-A---A----C--A--AU----UAUAA-A Suillus_sinuspaulianus -A----AC-A------AUAAU-G---U-------A--A-----AAUAA-A Paramecium_tetraurelia -U-C--UU-C------CUUUU-A---A----G--A--AG----UUUAA-U Dictyostelium_discoideum -------U-A------AAAGA-A--------------G-----AAAU--C Physarum_polycephalum -C-A--GU-A------GGGA--A---U----C--G--UG----AACAA-U Pylaiella_littoralis -G-G--AU-A------AUCCU-A---U----C--C--------CUCC--G Prototheca_wickerhamii -UAC--GU-UA-----GAAUC-G---U----G--G--AU----AAGUA-U Hydnora_africana -A-A--AU-G------GAAAC-A---U----U--U--GC----UAAUG-U Codium_fragile -A-A--UU-G------GAAAC-G---A----U--U--GC----UAAUA-C Caulerpa_sertularioides -U-U--UU-G------GAAAC-G---A----A--A--GC----UAAAA-C F -A-U--CG-G------GAAAC-C---G----A--C--GC----UAAUU-C F -A-U--CG-G------GAAAC-C---G--C-U--U--AU----UAAUA-C Glaucocystis_nostochinearum -A-G--AG-AACAAUAGGACU-C---U----U--U--UCGCC-GAAAG-G Gloeochaete_wittrockiana -G-C--AA-G-------UUCC-U---U----G--U--GUCG--AAAGA-U Cyanophora_paradoxa -A-G--UU-G------GAAAC-G---A----C--U--GC----UAAUA-C Cyanophora_paradoxa -A-G--UU-G------GAAAC-G---A----C--U--GC----UAAUA-C Cryptomonas_sp. -A-G--CU-G------GAAAC-G---G----C--U--GC----UAAUA-C Palmaria_palmata -A-G--UU-G------GAAAC-G---A----U--U--GC----UAAUG-C Heterosigma_akashiwo -A-U--UU-G------GAAAC-G---A----A--U--GC----UAAUA-C Skeletonema_pseudocostatum -A-A--UU-G------GAAAC-A---A----A--U--GC----UAAUA-C Pylaiella_littoralis -A-G--UU-G------GAAAU-G---A----C--U--GC----UAAUG-C Cyanidium_caldarium -A-G--UU-G------GAAAC-G---A----U--U--GC----UAAAA-C Emiliania_huxleyi -U-A--CU-G------GAAAC-G---G----U--A--GC----UAAGU-C Euglena_gracilis -A-G--AU-G------GAAAC-G---U----U--U--GC----UAAUG-C Anabaena_sp. -C-A--CU-G------GAAAC-G---G----U--G--GC----UAAUA-C F -------------------------------------------------- Synechococcus_elongatus_PCC_6301 -A-G--UU-G------GAAAC-G---A----C--U--GC----UAAUA-C F -------------------------------------------------- Oscillatoria_agardhii -A-G--UU-G------GAAAC-G---A----C--U--GC----UAAA--C Pleurocapsa_sp. -A-G--UU-G------GAAAC-G---A----C--U--GC----UAAUA-C Microcystis_aeruginosa -A-G--UU-G------GAAAC-G---A----C--U--GC----UAAUA-C Chlamydomonas_reinhardtii -------------------------------------------------- Chlamydomonas_eugametos ------UA-G------UAACU-U---A----------------GUAU--U Metridium_senile -------------------------------------------------- Streptococcus_pneumoniae -U-A--UU-G------GAAAC-G---A----U--A--GC----UAAUA-C Streptococcus_pyogenes -U-C--UU-G------GAAAC-G---A----U--A--GC----UAAUA-C Bacillus_anthracis -U-C--CG-G------GAAAC-C---G----G--G--GC----UAAUA-C Bacillus_cereus -U-C--CG-G------GAAAC-C---G----G--G--GC----UAAUA-C Enterococcus_faecalis -A-C--UU-G------GAAAC-A---G----G--U--GC----UAAUA-C Enterococcus_faecium -A-C--UU-G------GAAAC-A---G----G--U--GC----UAAUA-C Listeria_monocytogenes -U-C--CG-G------GAAAC-C---G----G--A--GC----UAAUA-C Bacillus_subtilis -U-C--CG-G------GAAAC-C---G----G--G--GC----UAAUA-C Bacillus_subtilis_A -U-C--CG-G------GAAAC-C---G----G--G--GC----UAAUA-C Bacillus_halodurans -A-U--CG-A------GAAAU-C---G----G--U--GC----UAAUA-C Staphylococcus_aureus -U-U--CG-G------GAAAC-C---G----G--A--GC----UAAUA-C Staphylococcus_aureus_N315 -U-U--CG-G------GAAAC-C---G----G--A--GC----UAAUA-C Lactococcus_lactis_subsp._lactis -A-U--UU-G------GAAAC-G---A----A--U--GC----UAAUA-C Streptococcus_pyogenes -U-A--UU-G------GAAAC-G---A----U--A--GC----UAAUA-C Lactobacillus_acidophilus -A-C--UU-G------GAAAC-A---G----G--U--GC----UAAUA-C Mycoplasma_capricolum -U-U--UU-G------GAAAC-G---A----A--A--GA----UAAUA-C Mycoplasma_mycoides -U-U--UU-G------GAAAC-G---A----A--A--GA----UAAUA-C Erysipelothrix_rhusiopathiae_(alpha-P15) -A-G--AG-G------GAAAC-U---U----C--U--GC----UAAUA-C Clostridium_innocuum -U-G--CU-G------GAAAC-G---G----U--A--GC----UAAAA-C Mycoplasma_genitalium -U-A--GU-U------GAAAA-A---C----U--A--GC----UAAUA-C Mycoplasma_pneumoniae -U-A--GU-U------GAAAG-A---C----U--A--GC----UAAUA-C Mycoplasma_pneumoniae -U-A--GU-U------GAAAG-A---C----U--A--GC----UAAUA-C Mycoplasma_gallisepticum -U-A--GU-C------GAAAG-A---U----U--A--GC----UAAUA-C Ureaplasma_urealyticum -U-A--GU-C------GAAAG-A---U----U--A--GC----UAAUA-C Ureaplasma_urealyticum -U-A--GU-C------GAAAG-A---U----U--A--GC----UAAUA-C Mycoplasma_hyopneumoniae -C-A--UU-G------GAAAC-A---G----U--G--GC----UAAUA-C Fusobacterium_necrophorum -A-U--CU-G------GAAAC-G---G----A--U--GC----UAAUA-C Fusobacterium_nucleatum_subsp._nucleatum -A-U--UU-G------GAAAC-G---A----A--U--GC----UAAUA-C Streptobacillus_moniliformis -C-A--UU-AG-----GAAAU-G---A----U--G--GA----UAAUA-C Clostridium_botulinum_type_f -C-U--UC-C------GAAAG-G---G----A--G--AU----UAAUA-C Clostridium_tetani -C-C--UC-C------GAAAG-G---A----G--G--AU----UAAUA-C Clostridium_perfringens -C-U--UC-C------GAAAG-G---A----A--G--AU----UAAUA-C Clostridium_difficile -A-U--AC-C------GAAAG-G---U----A--U--GC----UAAUA-C Eubacterium_brachy -A-U--UU-G------GAAAC-G---A----A--U--AU----UAAUA-C Epulopiscium_sp. -G-U--UU-G------GAAAC-A---A----A--C--GC----UAAUA-C Heliobacterium_chlorum -A-G--UC-C------GAAAG-G---G----C--U--GC----UAAUA-C Glycine_max -G-G--GU-GC-----GUAAU-G---C----G--U--G-G---GAAU--C Oenothera_berteroana -G-G--GU-GC-----GUAAC-G---C----G--U--G-G---GAAU--C Secale_cereale -C-G--UU-U------GCUGG-A---A----U--C--G-----GAAUA-G Triticum_aestivum -C-G--UU-U------GCUGG-A---A----U--C--G-----GAAUA-G Zea_mays -A-G--UU-G------AGAAC-A---A-------A--GU----GGCGA-A Marchantia_polymorpha -G----UU-G------AAAAC-A---A----AG-U--GG----CGAA--- Nephroselmis_olivacea -A-U--AG-U------AUUAU-C---U----A--U--------GAAU--C Gluconacetobacter_liquefaciens -U-C--UG-G------GAAAC-U---G----G--A--GC----UAAUA-C Bradyrhizobium_japonicum -A-C--AG-G------GAAAC-U---U----G--U--GC----UAAUA-C Rhodoblastus_acidophilus -U-C--AG-G------GAAAC-U---U----G--A--GC----UAAUA-C Azorhizobium_caulinodans -C-C--AG-G------GAAAC-U---U----G--G--AU----UAAUA-C Bartonella_quintana -A-C--AG-A------GAAAU-U---U----G--U--GC----UAAUA-C Mesorhizobium_loti -U-C--CG-G------GAAAC-U---G----G--A--GC----UAAUA-C Agrobacterium_tumefaciens -U-C--CG-G------GAAAC-U---G----G--A--AU----UAAUA-C Bartonella_bacilliformis -A-C--AG-A------GAAAU-U---U----G--U--GC----UAAUA-C Bartonella_henselae -A-C--AG-A------GAAAU-U---U----G--U--GC----UAAUA-C Brucella_melitensis -U-C--AG-G------GAAAC-U---U----G--U--GC----UAAUA-C Rhodobium_orientis -U-C--GG-G------GAAAC-U---C----G--G--GC----UAAUA-C F -------------------------------------------------- Rickettsia_bellii -U-U--UU-A------GAAAU-A---A----A--A--GC----UAAUA-C Rickettsia_felis_URRWXCal2 -U-U--UU-A------GAAAU-A---A----A--A--GC----UAAUA-C Rickettsia_prowazekii -U-U--UU-A------GAAAU-A---A----A--A--GC----UAAUA-C Rickettsia_prowazekii_(str._Madrid_E) -U-U--UU-A------GAAAU-A---A----A--A--GC----UAAUA-C Rickettsia_rickettsii -U-U--UU-A------GAAAU-A---A----A--A--GC----UAAUA-C Acinetobacter_calcoaceticus -A-U--UC-C------GAAUG-G---A----A--U--GC----UAAUA-C Psychrobacter_pacificensis -U-C--GG-G------GAAAC-U---C----G--A--AU----UAAUA-C Chromohalobacter_marismortui -C-U--GG-G------GAAAC-C---C----A--G--GC----UAAUA-C F -------------------------------------------------- Pseudomonas_aeruginosa -G-U--CC-G------GAAAC-G---G----G--C--GC----UAAUA-C Pseudomonas_aeruginosa -G-U--CC-G------GAAAC-G---G----G--C--GC----UAAUA-C Pseudomonas_sp. -G-U--UU-C------GAAAG-G---A----A--C--GC----UAAUA-C Pseudomonas_putida -G-U--UU-C------GAAAG-G---A----A--C--GC----UAAUA-C Coxiella_burnetii -C-U--GG-G------GAAAC-U---C----G--G--GC----UAAUA-C Methylococcus_capsulatus -UCU--GG-G-------AAAC-C---C----G--A--GC----UAAUA-C Legionella_pneumophila -U-U--GG-G------GAAAC-U---C----A--A--GC----UAAUA-C Legionella_pneumophila -U-U--GG-G------GAAAC-U---C----A--A--GC----UAAUA-C Allochromatium_vinosum -C-C--GG-G------GAAAC-U---C----G--G--GC----UAAUA-C Beggiatoa_sp._1401-13 -U-U--GG-G------GAAAC-U---C----A--A--GC----UAAUA-C Aeromonas_hydrophila -A-G--UU-G------GAAAC-G---A----C--U--GC----UAAUA-C Shewanella_putrefaciens -A-G--UU-G------GAAAC-G---A----C--U--GC----UAAUA-C Citrobacter_freundii -U-A--CU-G------GAAAC-G---G----U--A--GC----UAAUA-C Shigella_dysenteriae -U-A--CU-G------GAAAC-G---G----U--A--GC----UAAUA-C Klebsiella_pneumoniae -U-A--CU-G------GAAAC-G---G----U--A--GC----UAAUA-C Plesiomonas_shigelloides -U-A--CG-G------GAAAC-U---G----U--A--GC----UAAUA-C Yersinia_pestis -U-A--CU-G------GAAAC-G---G----U--A--GC----UAAUA-C F -------------------------------------------------- Shigella_dysenteriae -U-A--CU-G------GAAAC-G---G----U--A--GC----UAAUA-C Escherichia_coli_O157:H7 -U-A--CU-G------GAAAC-G---G----U--A--GC----UAAUA-C Escherichia_coli_O157:H7_EDL933 -U-A--CU-G------GAAAC-G---G----U--A--GC----UAAUA-C Escherichia_coli -U-A--CU-G------GAAAC-G---G----U--A--GC----UAAUA-C Escherichia_coli_K12 -U-A--CU-G------GAAAC-G---G----U--A--GC----UAAUA-C Escherichia_coli -U-A--CU-G------GAAAC-G---G----U--A--GC----UAAUA-C Escherichia_coli -U-A--CU-G------GAAAC-G---G----U--A--GC----UAAUA-C Escherichia_coli -U-A--CU-G------GAAAC-G---G----U--A--GC----UAAUA-C Salmonella_typhimurium -U-A--CU-G------GAAAC-G---G----U--G--GC----UAAUA-C Serratia_marcescens -U-A--CU-G------GAAAC-G---G----U--A--GC----UAAUA-C Edwardsiella_tarda -U-A--CU-G------GAAAC-G---G----U--A--GC----UAAUA-C Proteus_vulgaris -U-A--CU-G------GAAAC-G---G----U--G--GC----UAAUA-C Vibrio_cholerae -C-A--UU-G------GAAAC-G---A----U--G--GC----UAAUA-C Vibrio_cholerae -C-A--UU-G------GAAAC-G---A----U--G--GC----UAAUA-C Vibrio_cholerae -C-A--UU-G------GAAAC-G---A----U--G--GC----UAAUA-C Vibrio_cholerae -C-A--UU-G------GAAAC-G---A----U--G--GC----UAAUA-C Vibrio_cholerae -C-A--UU-G------GAAAC-G---A----U--G--GC----UAAUA-C Vibrio_cholerae -C-A--UU-G------GAAAC-G---A----U--G--GC----UAAUA-C F -------------------------------------------------- Haemophilus_influenzae -G-A--CG-G------GAAAC-U---G----U--C--GC----UAAUA-C Haemophilus_influenzae -G-A--CG-G------GAAAC-U---G----U--C--GC----UAAUA-C Haemophilus_influenzae -U-A--CG-G------GAAAC-U---G----U--A--GC----UAAUA-C Haemophilus_influenzae -G-A--CG-G------GAAAC-U---G----U--C--GC----UAAUA-C Haemophilus_influenzae_(operons_A-F) -G-A--CG-G------GAAAC-U---G----U--C--GC----UAAUA-C Pasteurella_multocida -U-G--UG-G------GAAAC-U---G----C--A--GC----UAAUA-C Pasteurella_multocida -U-G--UG-G------GAAAC-U---G----C--A--GC----UAAUA-C Xanthomonas_albilineans -G-U--AG-G------GAAAC-U---U----A--C--GC----UAAUA-C Xanthomonas_campestris -G-U--AG-G------GAAAC-U---U----A--C--GC----UAAUA-C Xylella_fastidiosa -G-U--AG-G------GAAAC-U---U----A--C--GC----UAAUA-C Dichelobacter_nodosus -G-U--AU-G------GAAAC-G---U----A--C--GC----UAAUA-C Francisella_tularensis -A-G--UU-G------GAAAC-G---A----C--U--GU----UAAUA-C Bordetella_parapertussis -U-A--CG-C------GAAAG-C---G----U--A--GC----UAAUA-C Bordetella_pertussis -U-A--CG-C------GAAAG-C---G----U--A--GC----UAAUA-C Bordetella_bronchiseptica -U-A--CG-C------GAAAG-C---G----U--G--GC----UAAUA-C unidentified_proteobacterium -U-C--GG-C------GAAAG-C---C----G--G--AU----UAAUA-C Burkholderia_mallei -C-C--GG-C------GAAAG-C---C----G--G--AU----UAAUA-C Burkholderia_sp. -C-C--GG-C------GAAAG-C---C----G--G--AU----UAAUA-C F -------------------------------------------------- F -------------------------------------------------- Neisseria_gonorrhoeae -U-G--AU-C------GAAAG-A---U----C--A--GC----UAAUA-C Comamonas_testosteroni -U-A--CU-C------GAAAG-A---G----U--A--GC----UAAUA-C Desulfovibrio_desulfuricans -A-G--UU-G------GAAAC-G---G----C--U--GC----UAAUA-C Myxococcus_xanthus -C-A--GU-C------GAAAG-A---U----U--G--GC----UAAUA-C Deferribacter_thermophilus -C-C--AU-C------GAAAG-G---U----G--G--GC----UAAUA-C Borrelia_burgdorferi -U-A--UU-A------GAAAU-A---G----U--A--GC----UAAUA-C Borrelia_burgdorferi -U-A--UU-A------GAAAU-A---G----U--A--GC----UAAUA-C Borrelia_hermsii -U-A--UU-A------GAAAU-A---G----U--A--GC----UAAUA-C Spirochaeta_aurantia -U-U--GU-G------GAAAC-A---C----A--G--GG----UAAUA-C Treponema_pallidum_(rRNA_A) -C-U--CU-A------GAAAU-A---G----G--G--G-G---UAAUA-C Leptonema_illini -C-U--UU-C------GAAAG-G---A----A--G--GC----UAAUA-C Leptospira_interrogans -U-U--UC-C------GAAAG-G---G----A--A--GC----UAAUA-C Chlamydia_trachomatis_D/UW-3/CX -G-G--UU-G------GAAAC-G---G----C--C--GC----UAAUA-C Chlamydia_trachomatis_L2/434/BU -G-G--UU-G------GAAAC-G---G----C--C--GC----UAAUA-C Chlamydia_muridarum -G-G--UU-G------GAAAC-G---G----C--C--GC----UAAUA-C Chlamydophila_pneumoniae_AR39 -G-G--UU-G------GAAAC-G---A----U--C--GC----UAAUA-C Chlamydophila_pneumoniae -G-G--UU-G------GAAAC-G---A----U--C--GC----UAAUA-C Chlamydophila_pneumoniae_J138 -G-G--UU-G------GAAAC-G---A----U--C--GC----UAAUA-C F -------------------------------------------------- Chlamydophila_psittaci -G-G--UU-G------GAAAC-G---A----C--C--GC----UAAUA-C Deinococcus_radiodurans -U-G--GC-C------GAAAG-G---U----C--A--GC----UAAUA-C Deinococcus_radiodurans -U-G--GC-C------GAAAG-G---U----C--C--GC----UAAUA-C Bacteroides_fragilis -C-U--UU-C------GAAAG-A---A----A--G--AU----UAAUA-C Porphyromonas_gingivalis -C-G--UU--------GAAA--G---A----C--G--GAC---UCAAA-C Prosthecochloris_vibrioformis -C-C--CG-A------GAAAU-C---G----G--G--GA----CAAUA-C Campylobacter_jejuni -A-G--UU-G------GAAAC-G---A----C--U--GC----UAAUA-C Campylobacter_jejuni -A-G--UU-G------GAAAC-G---A----C--U--GC----UAAUA-C Campylobacter_sputorum -A-A--AG-A------CUUAA-U---U----U--U--UA----AAUCU-A F -------------------------------------------------- Helicobacter_pylori_J99 -C-A--UU-G------GAAAC-G---A----U--G--AU----UAAUA-C Helicobacter_pylori -C-A--UU-G------GAAAC-G---A----U--G--AU----UAAUA-C Acidobacterium_capsulatum -U-U--CG-G------GAAAC-C---G----A--G--GC----UAAUA-C Holophaga_foetida -G-U--UC-C------GAAAG-G---G----A--C--GA----UAAUA-C Arthrobacter_globiformis -C-C--UG-G------GAAAC-U---G----G--G--UC----UAAUA-C Micrococcus_luteus -C-C--UG-G------GAAAC-U---G----G--G--UC----UAAUA-C Frankia_sp. -C-U--CG-G------GAAAC-C---G----G--G--GC----UAAUG-C Streptomyces_bottropensis -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C Streptomyces_scabiei -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C Streptomyces_neyagawaensis -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C F -------------------------------------------------- Streptomyces_sp. -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C Streptomyces_acidiscabies -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C Streptomyces_griseus -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C Streptomyces_ornatus -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C Streptomyces_subrutilus -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C Streptomyces_bikiniensis -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C Streptomyces_galbus -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C Streptomyces_hygroscopicus -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C Streptomyces_lincolnensis -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C Streptomyces_coelicolor -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C Streptomyces_tendae -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C Streptomyces_ambofaciens -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C Streptomyces_eurythermus -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C Streptomyces_nodosus -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C Streptomyces_sampsonii -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C Streptomyces_glaucescens -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C Streptomyces_pseudogriseolus -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C Streptomyces_caelestis -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C Streptomyces_bluensis -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C Streptomyces_espinosus -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C Streptomyces_mashuensis -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C Streptomyces_rimosus -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C Streptomyces_limosus -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C Streptomyces_odorifer -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C Streptomyces_felleus -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C Streptomyces_albidoflavus -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C Streptomyces_gougerotii -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C Streptomyces_rutgersensis -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C Streptomyces_intermedius -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C F -------------------------------------------------- Streptomyces_thermoviolaceus -C-C--CU-G------GAAAC-G---G----G--G--UC----UAAUA-C F -------------------------------------------------- F -------------------------------------------------- Streptomyces_macrosporus -U-C--CG-G------GAAAC-C---G----G--A--GC----UAAUA-C Streptomyces_megasporus -U-C--CG-G------GAAAC-C---G----G--A--GC----UAAUA-C Streptomyces_thermolineatus -C-C--GG-G------GAAAC-C---C----G--G--GC----UAAUA-C Mycobacterium_tuberculosis -C-C--UG-G------GAAAC-U---G----G--G--UC----UAAUA-C Mycobacterium_tuberculosis -C-C--UG-G------GAAAC-U---G----G--G--UC----UAAUA-C Mycobacterium_avium -C-C--UG-G------GAAAC-U---G----G--G--UC----UAAUA-C Mycobacterium_leprae -C-U--UG-G------GAAAC-U---G----G--G--UC----UAAUA-C Mycobacterium_leprae -C-U--UG-G------GAAAC-U---G----G--G--UC----UAAUA-C F -------------------------------------------------- F -------------------------------------------------- Nocardia_asteroides -C-C--UG-G------GAAAC-U---G----G--G--UC----UAAUA-C Rhodococcus_erythropolis -C-C--UG-G------GAAAC-U---G----G--G--UC----UAAUA-C Corynebacterium_diphtheriae -C-C--UG-G------GAAAC-U---G----G--G--UC----UAAUA-C Actinomyces_israelii -C-G--CU-U------GAAAG-G---G----U--G--GC----UAAUA-C Brachyspira_hyodysenteriae -C-C--AU-G------GAAAC-A---U----G--G--AC----UAAUA-C Geotoga_subterranea -U-A--CU-G------GAAAC-G---G----U--A--G-G---UAAUA-C Petrotoga_miotherma -U-A--CU-G------GAAAC-G---G----U--A--G-G---UUAAC-U Brevinema_andersonii -C-A--AG-A------GAAAU-U---U----U--G--G-G---UAAUA-C Herpetosiphon_aurantiacus -G-G--GU-C------GAAAG-A---C----U--C--GC----UAAUC-C F -------------------------------------------------- Aquifex_aeolicus -C-C--CG-G------GAAAC-C---G----G--G--GC----UAAUA-C Aquifex_pyrophilus -C-C--CG-G------GAAAC-C---G----G--G--GC----UAAUA-C Thermotoga_maritima -C-A--GG-G------GAAAC-C---C----U--G--GC----UAAUA-C Thermotoga_maritima -C-A--GG-G------GAAAC-C---C----U--G--GU----UAAUA-C F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -C-C--GG-G------GAAAC-U---C----G--G--GC----UAAUC-C F -------------------------------------------------- F -------------------------------------------------- Thermus_thermophilus -C-C--GG-G------GAAAC-U---C----G--G--GC----UAAUC-C Thermus_aquaticus -A-U--GG-G------GAAAC-C---C----A--G--GC----UAAUC-C Thermomicrobium_roseum -C-C--GG-G------GAAAC-U---C----G--G--GC----UAAUA-C Pirellula_marina -G-U--CG-G------GAAAC-U---G----G--C--G-G---UAAUA-C Pirellula_staleyi -G-G--CG-G------GAAAC-U---G----C--C--G-G---UAAUA-C Planctomycetaceae_Schlesner_670 -C-A--AG-G------GAAAC-U---U----U--G--G-G---UAAUA-C Gemmata_obscuriglobus -C-A--UC-A------GAGAU-G---G----U--G--G-G---UAAUA-C Isosphaera_pallida -C-G--GG-G------GAAAC-U---C----C--G--GG----UAAUU-C Pyrococcus_abyssi -C-C--CG-G------GAAAC-U---G----G--G--GC----UAAUC-C Pyrococcus_horikoshii -C-C--CG-G------GAAAC-U---G----G--G--GC----UAAUC-C Pyrococcus_furiosus -C-C--CG-G------GAAAC-U---G----G--G--GC----UAAUC-C Thermococcus_celer -C-C--CG-G------GAAAC-U---G----G--G--GC----UAAUC-C Archaeoglobus_fulgidus -C-C--CG-G------GAAAC-U---G----G--G--GC----UAAUC-C Nanoarchaeum_equitans -C-C--CG-G------GAAAC-U---G----G--G--GC----UAAUC-C Aeropyrum_pernix_(str._K1) -C-U--CG-G------GAAAC-U---G----G--G--GC----UAAUC-C Pyrodictium_occultum -C-C--CG-G------GAAAC-U---G----G--G--GC----UAAUC-C Thermoproteus_tenax -C-C--CG-G------GAAAC-U---G----G--G--GC----UGAUC-C Sulfolobus_acidocaldarius -C-C--CG-G------GAAAC-U---G----G--G--GA----UAAUC-C Sulfolobus_solfataricus -C-C--CG-G------GAAAC-U---G----G--G--GA----UAAUC-C Bacteroides_fragilis -C-C--CG-G------GAAAC-U---G----G--G--GA----UAAUC-U F -------------------------------------------------- F -------------------------------------------------- Methanobacterium_formicicum -C-C--UG-G------GAAAC-U---G----G--G--GA----UAAUA-C Methanococcus_vannielii -C-U--UG-G------GAAAC-U---G----A--G--GA----UAAUU-C F -------------------------------------------------- F -------------------------------------------------- Halobacterium_sp. -C-U--CG-G------GAAAC-U---G----A--G--GC----UAAUC-C Natronorubrum_bangense -C-U--CG-G------GAAAC-U---G----A--G--GC----CAAUC-C Natronobacterium_innermongoliae -C-U--CG-G------GAAAC-U---G----A--G--GC----UAAUC-U Haloferax_volcanii -C-U--CG-G------GAAAC-U---G----A--G--GC----UAAUA-G Methanospirillum_hungatei -C-C--CG-G------GAAAC-U---G----G--G--G-G---UAAUA-C Picrophilus_torridus_DSM_9790 -C-U--CG-G------GAAAC-U---G----A--G--GC----UAAUU-C Thermoplasma_acidophilum -C-U--CG-G------GAAAC-U---G----A--G--GC----UAAUU-C Giardia_ardeae -G-C--UG-G------CAACC-C---A----G--C--GA----CAAGA-C Giardia_intestinalis -G-C--UG-G------CAACC-C---G----G--C--GC----CAAGA-C Giardia_muris -A-GA-CG-G-------AUAC-C---G----C--U--GG----CAACC-C Amblyospora_bracteata -C-A--CG-G------GAAAC-U---G----U--G--GC----UAAGA-C Glomus_sp._W3349 CU-A--CC-A-------UGGU-G---G----U--A--AC----GGGUA-- Scutellospora_cerradensis -G-G--CC-U------ACCAU-G---G----U--U--UU----AACGG-G Glomus_intraradices -A-G--AG-G------CCUAC-C---A----U--G--G-----UGGUA-A Smittium_culisetae -A-A--UUAG------GGUUC-G---A----U--U--CCGGAGAGGGAGC Mastigamoeba_balamuthi -------------------------------------------------- Aspergillus_flavus -A-G--UG-G------CCUAC-C---A----U--G--G-----UGGCA-A Tilletia_caries -G-G--CC-U------ACCAU-G---G----U--U--GC----AACGG-G Mucor_circinelloides_f._lusitanicus -G-U--AA-GAUA---GAGGC-U---U----A--C--AAUGCCUACAA-C Mucor_racemosus -G-U--AA-GAUA---GAGGC-U---U----A--C--AAUGCCUACAA-C Rhizopus_oryzae -G-U--AA-GAUA---GAGGC-U---U----A--C--AAUGCCUACAA-C Mytilus_edulis -G-C--CU-A-------CCAU-G---G----U--U--GU----AACGG-G Placopecten_magellanicus -G-C--CU-A-------CCAU-G---G----U--U--GU----AACGG-G Echinococcus_granulosus -C-G--AG-G------UGGAC-G---U----C--G--CG----UGCG--U Drosophila_melanogaster -G-A--UU-C------CGGAG-A---G----------G-----GAGC--C Crossodonthina_koreana -G-C--CU-A-------CCAU-G---G----U--U--GUA---ACGGG-U Androctonus_australis -G-C--CU-A-------CCAU-G---G----U--C--GU----UACGG-G Okanagana_utahensis -A-GC-CU-GA-----GAAAC-G---G----C--UA-CC----ACAU--C Artemia_salina -G-C--CU-A-------CCAU-G---G----U--U--GCA---ACGGG-U Mus_musculus -C-C--GU-GC-----CUACC-A---U----G--G--U-----GACC--A Rattus_norvegicus -C-C--GU-GC-----CUACC-A---U----G--G--U-----GACC--A Homo_sapiens -C-C--GU-GC-----CUACC-A---U----G--G--U-----GACC--A Oryctolagus_cuniculus -C-C--GU-GC-----CUACC-A---U----G--G--U-----GACC--A Xenopus_borealis -C-G--CC-U------ACCAU-G---G----U--G--AC----CACG--G Xenopus_laevis -C-G--CC-U------ACCAU-G---G----U--G--AC----CACG--G Acanthamoeba_castellanii -A-G--CC-G------GCAAC-G---G----C--U--UC----AACUC-C Balamuthia_mandrillaris -G-A--UU-C------CGGAG-A---G----------G-----GAGC--C Plasmodium_falciparum -G-G--CC-U------AACAU-G---G----C--U--AU----GACGGGU Plasmodium_falciparum -G-G--UA-U------GUAUU-U---G----U--U--------AGAU--A Plasmodium_vivax -A-A--UU-A------GAGUUCG---A----U--U--CCGGAGAGGGAGC Plasmodium_vivax -U-CG-UC-U------AAGAA-G---A----A--A--GUUU--UAAUA-G Plasmodium_vivax -A-GC-CU-GA-----GAAAU-A---G----C--UA-CC----ACAU--C Entamoeba_histolytica -C-A--UU-C-------AAUG-A---A----UU-G--AGA---AAUGA-C Ichthyophonus_hoferi -G-C--UU-A-------CCAU-G---G--U-U--C--CA----ACGG--G Dermocystidium_sp. -G-G--CU-U------ACCAU-G---G----U--CCCAA----CGGG--U Sphaerothecum_destruens -G-G--CU-U------ACCAU-G---G----U--U--GC----AACGG-G Acanthocoepsis_unguiculata -G-G--CC-U------ACCGU-G---G----U--U--G-----CAAC--G Diaphanoeca_grandis -G-G--CU-U------ACCAU-G---G----U--U--GC----AACGG-G Allomyces_macrogynus -G-G--CC-U------ACCAU-G---G----U-----------GAUAA-C Blastocladiella_emersonii -A-G--AG-G------CCUAC-C---G----U--G--G-----UGAUA-A Candida_albicans -U-U--AU-U------AGAUA-A---A----A--A--AU----CAAUG-C Saccharomyces_cerevisiae -G-G--CC-U------ACCAU-G---G----U--U--UC----AACGG-G Neurospora_crassa -UGG--CC-A------GCCAU-G---G----U--G--A-----CAACG-G Podospora_anserina -UGG--CC-A------GCCAU-G---G----U--G--A-----CAACG-G Coccidioides_immitis -G-G--CC-U------ACCAU-G---G----U--G--GC----AACGG-G Leishmania_major -C-A--GU-A------AAACC-A---A----U--G--CCU---UCAC--U Trypanosoma_cruzi -A-A--GU-AAAA---CCAAU-G---C----C--U--UCA---CCGGG-C Trypanosoma_brucei -G-U--GC-C------CUAGU-G---C----A--U--GG----UUGU--U Pneumocystis_carinii -G-G--CC-U------ACCAU-G---G----U--U--UC----GACGG-G Cryptococcus_neoformans_var._neoformans -G-G--CC-U------ACCAU-G---G----U--A--UC----AACGG-G fungal_contaminant_of_QPX_isolate -G-U--CU-A-------CCAU-G---G--U-A--U--CA----ACGGG-U Ustilago_maydis -G-G--CC-U------ACCAU-G---G----U--U--GC----AACGG-G Mnemiopsis_leidyi -U-U---U-C-------GAUG-G---U----A--A--G-----GUAU--- Tripedalia_cystophora -G-G--CU-U------ACCAU-G---G----U--U--GC----AACGG-G Microciona_prolifera -G-G--CC-U------ACCAU-G---G----U--U--GC----AACGG-G Psorospermium_haeckeli -G-G--CU-U------ACCAU-G---G----U--U--A-----UAAC--G Euglypha_rotunda -G-A--CU-A-------CCAU-G---G-------C--UA----UAACG-G Paulinella_chromatophora -U-A--CC-G-------UGGC-G---U----U--A--AC----GGGU--G Antirrhinum_majus -G-G--CC-U------ACUAU-G---G----U--G--GU----GACGG-G Sesamum_indicum -G-G--CC-U------ACUAU-G---G----U--G--GU----GACGG-G Digitalis_grandiflora -G-G--CC-U------ACUAU-G---G----U--G--GU----GACGG-G Plantago_lanceolata -G-G--CC-U------ACUAU-G---G----U--G--GU----GACGG-G Nicotiana_tabacum -G-G--CC-U------ACCAU-G---G----U--G--GU----GACGG-G Arabidopsis_thaliana -G-G--CC-U------ACCAU-G---G----U--G--GU----AACGG-G Sinapis_alba -G-G--CC-U------ACCAU-G---G----U--G--GU----AACGG-G Solanum_tuberosum -G-G--CC-U------ACCAU-G---G----U--G--GU----GACGG-G Fragaria_x_ananassa -G-G--CC-U------ACCAU-G---G----U--G--GU----GACGG-G Glycine_max -G-G--CC-U------ACCAU-G---G----U--G--GU----GACGG-G Oryza_sativa -U-A--CC----------AU--G---G----U--G--GU----GACGG-G Zea_mays -U-A--CC----------AU--G---G----U--G--GU----GACGG-G F -------------------------------------------------- Genicularia_spirotaenia -G-G--CC-U------ACCAU-G---G----UG-G--UU----ACGG--G F -------------------------------------------------- Cyanophora_paradoxa -U-A--CC----------AU--G---G----U--A--GU----AACGG-G Glaucocystis_nostochinearum -G-G--CC-U------ACCAU-G---G----U--G--UU----AACGG-G Gloeochaete_wittrockiana -U-A--CC----------AU--G---G----U--G--GC----AACGG-G FChlorella'_luteoviridis -G-G--CC-U------ACCAU-G---G----U--U--UU----GACGG-G Oxytricha_longa -G-A--CU-A-------CCAU-G---G--C-U--U--UC----ACGG--G Paraurostyla_weissei -G-A--CU-A-------CCAU-G---G--C-U--U--UC----ACGG--G Cyrtohymena_citrina -G-A--CU-A-------CCAU-G---G--C-U--U--UC----ACGG--G Gastrostyla_steinii -G-A--CU-A-------CCAU-G---G--C-U--U--UC----ACGG--G Pleurotricha_lanceolota -G-A--CU-A-------CCAU-G---G--C-U--U--UC----ACGG--G Onychodromus_quadricornutus -G-A--CU-A-------CCAU-G---G--CGU--U--CA----CGGG--U Stylonychia_lemnae -G-A--CU-A-------CCAU-G---G--C-U--U--UC----ACGG--G Stylonychia_mytilus -G-A--CU-A-------CCAU-G---G--C-U--U--UC----ACGG--G Engelmanniella_mobilis -G-A--CU-A-------CCAU-G---G--C-U--U--UA----ACGGG-U Oxytricha_granulifera -G-A--CU-A-------CCAU-G---G--C-U--U--UA----ACGGG-U Oxytricha_granulifera -G-A--CU-A-------CCAU-G---G--C-U--C--UU----ACGGG-U Uroleptus_gallina -G-A--CU-A-------CCAU-G---G--C-U--U--UC----ACGG--G Uroleptus_pisces -G-A--CU-A-------CCAU-G---G--C-U--U--UC----ACGG--G Paruroleptus_lepisma -G-A--CU-A-------CCAU-G---G--C-U--U--UC----ACGG--G Urostyla_grandis -G-A--CU-A-------CCAU-G---G--C-U--U--UA----ACGGG-U Balantidium_coli -U-U--AG-A-------UAUU-C---C----A--A--U-----UAAG--G Euplotes_aediculatus -U-C--CG--------GAGA--G---G----G--A--G-----CCUG--A Tetrahymena_thermophila -A-C--UA-C------CAUGG-C---A----G--U--C-----ACGG--G Bangia_sp._(Northwest_Territories/NWT) -G-GU-CU-A-------CCAU-G---G--UGU--C--GA----CGGG--U Bangia_sp._(Virgin_Islands/VIS7) -G-C--CU-A-------CCAU-G---G--C-G--U--UA----ACGGG-U Erythrotrichia_carnea -G-C--CU-A-------CCAU-G---G--U-G--U--UA----ACGGG-U Rhodochaete_parvula -G-C--CU-A-------CCAU-G---G--U-G--U--UA----ACGG--G Compsopogon_coeruleus -G-G--CC-U------ACCAU-G---G----U--G--GU----AACGG-G Porphyridium_aerugineum -C----CU-A-------CCGU-G---G----U--G--UU----UACGG-G Rhodella_maculata -U-A--CC-A-------UGGU-G---G----U--A--AC----GGGUA-A Aulacoseira_ambigua -G-G--CC-U------ACCAU-G---G----CAUU--AA----CGGG--U Aulacoseira_baicalensis -G-C--CU-A-------CCAU-G---G--C-G--U--UA----ACGG--G Stephanopyxis_nipponica -G-C--CU-A-------CCAU-G---G--C-A--U--UA----ACGG--G Coscinodiscus_radiatus -G-C--CU-A-------CCAU-G---G--C-U--U--UA----ACGG--G Corethron_criophilum -G-C--CU-A-------CCAU-G---G--C-U--U--UA----ACGG--G Amphora_cf._capitellata -G-G--CU-U------ACCGU-G---G----C--UUUAA----CGGG--U Sellaphora_pupula_f._capitata -G-G--CC-U------ACCUU-G---G----C--UU-UA----ACGG--G Thalassiosira_antarctica -G-C--CU-A-------CCAU-G---G--C-U--U--UA----ACGG--G Encyonema_triangulatum -G-C--CU-A-------CCAU-G---G--C-U--U--UA----ACGG--G Achnanthes_bongranii -G-C--CU-A-------CCAU-G---G--C-U--U--UA----ACGG--G F -------------------------------------------------- Diatoma_tenue -G-C--CU-A-------CCAU-G---G--C-U--U--UA----ACGG--G Grammatophora_marina -G-G--CU-U------ACGAU-G---G----C--U---U----UAACG-G Thalassionema_sp._p474 -G-C--CU-A-------CCAU-G---G--C-U--U--UA----ACGG--G Rhaphoneis_belgicae -G-C--CU-A-------CCAU-G---G--C-U--U--UA----ACGG--G Undatella_sp._p446 -G-C--CU-A-------CCAU-G---G--CUU--U--AA----CGGG--- Cymatosira_belgica -G-C--CU-A-------CCAU-G---G--C-U--U--UA----ACGG--G Odontella_sinensis -G-C--CU-A-------CCAU-G---G--C-U--U--UA----ACGG--G Ditylum_brightwellii -G-C--CU-A-------CCAU-G---G--C-U--U--UA----ACGG--G Lithodesmium_undulatum -G-C--CU-A-------CCAU-G---G--C-U--U--UA----ACGG--G Thalassiosira_eccentrica -G-A--CU-A-------CCAU-G---G--C-U--U--UA----ACGGG-U Thalassiosira_pseudonana -G-A--CU-A-------CCAU-G---G--C-U--U--UA----ACGGG-U Skeletonema_costatum -G-A--CU-A-------CCAU-G---G--C-U--U--UA----ACGGG-U Pleurosira_cf._laevis -G-C--CU-A-------CCAU-G---G--C-U--U--UA----ACGG--G Lauderia_borealis -G-G--CU-U------ACCGU-G---G----U--C--G-----UAAUG-G F -------------------------------------------------- Bolidomonas_mediterranea -G-C--CU-A-------CCAU-G---G--C-U--U--UA----ACGG--G Bolidomonas_pacifica -G-C--CU-A-------CCAU-G---G--C-U--U--UA----ACGG--G Labyrinthuloides_minuta -G-A--CU-A-------CCAU-G---G----CG-U--UA----ACGGG-U Leptocylindrus_danicus -U-G--GA-C------UACCG-UG--C----C--A--GU----AACGG-G Chaetoceros_sp. -G-A--CU-A-------CCGU-G---G--C-U--U--UA----ACGG--G Aphanomyces_invadans -G-G--CC-U------ACCAU-G---G----CG-U--UA----ACGG--G Lagenidium_giganteum -G-G--CC-U------ACCAU-G---G----CA-U--UA----ACGG--G Melosira_varians -U-G--CC-U------ACCAU-G---G----C--A---CU---CACGG-G Blastocystis_hominis -G-G--CC-U------ACCAU-G---G----CA-G--UA----ACGG--G Perkinsus_marinus -G-C--CU-A-------CCGU-G---G--C-G--U--UG----ACGG--G Toxoplasma_gondii -U-GGACU-A-------CCGU-G---G----C--A--GU----GACGG-G Alexandrium_fundyense -UGG--CU-U------ACCGU-G---G----C--A--AUG---ACAGG-- Babesia_bigemina -U-C--GA-G------GCCUU-U---U----G--GCGGC----GUUUA-U Babesia_canis -G-G--CC-U------ACCGA-G---G----CAGC--AA----CGGG--- Babesia_sp._'Oklahoma_dog' -G-G--CC-U------ACCGA-G---G----CAGC--AA----CGGG--- Babesia_microti -G-G--CC-U------ACCGG-G---G----CGAC--GA----CGGG--- Babesia_microti -G-G--CC-U------ACCGG-G---G----CGAC--GA----CGGG--- Babesia_microti -G-G--CC-U------ACCGG-G---G----CGAC--GA----CGGG--- Babesia_microti -G-G--CC-U------ACCGG-G---G----CGAC--GA----CGGG--- Babesia_microti -G-G--CC-U------ACCGG-G---G----CGAC--GA----CGGG--- Babesia_rodhaini -G-G--CC-U------ACCGG-G---G----CGAC--GA----CGGG--- Babesia_gibsoni -G-G--CC-U------ACCGG-G---G----CAGC--GA----CGGG--- Babesia_bovis -C-G--C--G------UUUAC----------U--G--GU----CUUG--U Jakoba_libera -G-G--CC-U------ACCGA-G---G----C--U--UC----UACGG-G Reclinomonas_americana -G-G--CG-U------ACCGA-G---G----C--C--G-----CAACG-G Bonamia_ostreae -G-C--CU-A-------CCGU-G---G--C-U--U--UG----ACGG--G Audouinella_dasyae -G-U--CU-U------ACCAU-G---G--UUG--U--GA----CGGG--- Audouinella_hermannii -G-U--CU-U------ACCAU-G---G--UUG--U--GA----CGGG--- Nemalion_helminthoides -G-U--CU-U------ACCAU-G---GU-U-G--U--GA----CGGG--- Batrachospermum_gelatinosum -G-U--CU-U------ACCAU-G---GU-U-G--U--GA----CGGG--- Nemalionopsis_tortuosa -G-U--CU-U------ACCAU-G---GU-U-G--U--GA----CGGG--- Thorea_hispida -G-U--CU-U------ACCAU-G---GU-U-G--U--GA----CGGG--- Thorea_violacea -G-U--CU-U------ACCAU-G---GU-U-G--U--GA----CGGG--- Thorea_violacea -G-U--CU-U------ACCAU-G---GU-U-G--U--GA----CGGG--- Thorea_violacea -G-U--CU-U------ACCAU-G---GU-U-G--U--GA----CGGG--- Nemalionopsis_shawii -G-U--CU-U------ACCAU-G---GU-U-G--U--GA----CGGG--- Balbiania_investiens -G-U--CU-U------ACCAU-G---GU-U-G--U--GA----CGGG--- Batrachospermum_macrosporum -G-U--CU-U------AUCAU-G---GU-U-G--U--GA----CAGG--- Ahnfeltia_plicata -G-U--CU-U------CACGU-G---GU-U-G--U--GA----CGGG--- Corallina_officinalis -U-C--UU-A-------CCAU-G---G--U-G--G--CA----ACGG--G Rhodogorgon_carriebowensis -U-C--UU-A-------CCAU-G---G--U-G--G--UG----ACGG--G Bonnemaisonia_hamifera -G-U--CU-U------ACCAU-G---GU-U-G--U--GA----CGGG--- Gelidium_vagum -G-U--CU-U------ACCAU-G---GU-U-G--U--GA----CGGG--- Chondrus_crispus -G-U--CU-U------ACCAU-G---GU-U-G--U--GA----CGAG--- Halymenia_plana -G-U--CU-U------ACCAU-G---GU-U-G--U--G-----ACGG--G Rhodymenia_leptophylla -G-U--CU-U------ACCAU-G---GU-U-U--U--GA----CGGG--- Plocamiocolax_pulvinata -G-U--CU-U------AUCAU-G---GU-C-G--U--GA----CGGG--- Ceramium_rubrum -G-U--CU-U------ACCAU-G---GU-U-U--U--GA----CGGG--- Gracilariopsis_sp. -A-A--UG-G------CUUAC-C---AUGG-U--U--GU----GACGG-G Bostrychia_moritziana -G-GU-AA-GGUA---GUGGC-U---U--A-C--C--AU----AGUUG-U Hildenbrandia_rubra -G-U--CU-U------ACCAU-G---GU-U-G--U--GA----CGGG--- Dixonielloa_grisea -G-C--CU-A-------CAAU-G---G--U-GA-U--UA----CGGG--- Naegleria_fowleri -A-U--CU-A------AGGAC-G---G--C-A-----G-----CAGGC-G Naegleria_gruberi -A-U--CU-A------AGGAC-G---G--C-A-----G-----CAGGC-G Hexamita_sp. -U-A--C----------AUC------G--G-U--A--GU----GAGA--G Tritrichomonas_foetus -G----UA-G---------GC-U---A--U----C--------ACGGG-U Amblyospora_khaliulini ---------G--------AAC--------A-------------UAAC--- Edhazardia_aedis ------UU-A------AAUAU-A---A--C-------------CAUG--G Amblyospora_connecticus -------------------A---------U-------------UAUU--- Intrapredatorus_barri ------------------CA---------U-------------UUAU--- Amblyospora_ferocious -------------------------------------------------- Amblyospora_sp. ------------------CU---------U-------------AUCU--- Culicosporella_lunata -------------------------------------------------- Parathelohania_anophelis -------------------------------------------------- Hazardia_sp. -------------------------------------------------- Hazardia_milleri -------------------------------------------------- Polydispyrenia_simulii -A-C---G-G-------UAAC-C------U-G--U--GG----------C Weiseria_palustris -A-C---G-G-------UAAC-C------U-G--U--GG----CUAA--- Nosema_sp. -------------------------------------------------- Nosema_sp. -------------------------------------------------- F -------------------------------------------------- Nosema_sp. -------------------------------------------------- Nosema_spodopterae -------------------------------------------------- Nosema_trichoplusiae -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Nosema_bombycis -------------------------------------------------- Vairimorpha_imperfecta -------------------------------------------------- Nosema_furnacalis -------------------------------------------------- F -------------------------------------------------- F -------------------------------------------------- Nosema_oulemae -------------------------------------------------- Nosema_necatrix -------------------------------------------------- Vairimorpha_necatrix -------------------------------------------------- Nosema_apis -------------------------------------------------- Oligosporidium_occidentalis -------------------------------------------------- F -------------------------------------------------- Vittaforma_corneae -------------------------------------------------- Ameson_michaelis -------------------------------------------------- Thelohania_contejeani ------UC-U-------ACAA-G---A--U-------------AUAG--- Encephalitozoon_hellem -------------------------------------------------- F -------------------------------------------------- Encephalitozoon_cuniculi -------------------------------------------------- Ordospora_colligata -------------------------------------------------- Enterocytozoon_salmonis -------------------------------------------------- Nucleospora_salmonis -------------------------------------------------- F -------------------------------------------------- Enterocytozoon_bieneusi -------------------------------------------------- Brachiola_algerae -------G-G------AUAAC-C------U-------------UGUU--- Thelohania_solenopsae ------AU-A------ACCUU-G---U--C-------------AAGA--- Visvesvaria_acridophagus -C-G--CG-G------UAAGC-U---G--C-G--G--GU----AAAA--C Bacillidium_sp. -U----UG-G------UAAGC-U---A--A----G--GC----UAAU--- Pseudonosema_cristatellae -C-A--UG-G------UAAGC-U---A--U----G--GC----UAAUA-C Pleistophora_sp. -------------------------------------------------- Orthosomella_operophterae -------------------------------------------------- Flabelliforma_magnivora -------------------------------------------------- Glugea_atherinae -------------------------------------------------- F -------------------------------------------------- Loma_acerinae -------------------------------------------------- Heterosporis_anguillarum -U----CU-G------UAACC-G---G--A----G--GC----CAAUA-C Pleistophora_mirandellae -U----CU-G------UAACC-G---G--A----G--GC----CAAUA-C Trachipleistophora_hominis -U----CU-G------UAAAC-G---G--A----G--GC----CAAAA-C Vavraia_culicis -U----CU-A------UAACC-G---G--A----G--GC----CAAAA-C F -------------------------------------------------- Microgemma_sp. -------------------------------------------------- Spraguea_lophii -C-U--CA-G------GAAAC-A---G--A-G--G--G-----GAAAA-C F -------------------------------------------------- Dictyocoela_gammarellum -A-C--CG-G------GAAAC-U---G--G----U--GG----GAAAA-C Microsporidium_prosopium -U----CU-G------UAAAC-G---G--A----G--GA----CAAAA-C Antonospora_scoticae ---G---G-G------AUAAC-C------G-C--G--G-----CAAG--C Paranosema_whitei -C-G--CG-G------CAAGC-U---G--C----G--GC----UAAGA-C #=GC SS_cons .<.<..<<.<..........>.>...>....>..>..>>........>.> Cynomorium_coccineum -C--C----C------GUUA-------------G-CU------GAGGAGC Cytinus_ruber -C--C----C------AUAG-------------A-CU------GAGGAGU Nicotiana_tabacum -C--C----C------GUAG-------------G-CU------GAGGAGC Spinacia_oleracea -C--C----C------GUAG-------------G-CU------GAGAAGC Zea_mays -C--C----C------GUAG-------------G-CU------GAGGAGC Marchantia_polymorpha -C--C----C------AUAG-------------G-CU------GAGGAGC Ricinus_communis -C--C----C------GUAG-------------G-CU------GAGGAGC F -C--U----C------GUAUU------------G-CU------GAGAAGU Prototheca_wickerhamii -C--U----U------AUAUU------------G-CU------GAGAAGU Pedinomonas_minor -U--C----C------AUA-U------------G-CU------GAGGAGU Nephroselmis_olivacea -C--C----C------GUAG-------------G-CU------GAGGAGU Pyramimonas_parkeae -C--C----U------AUAA-------------G-CU------GAGGAGU Chlamydomonas_reinhardtii -C--C----C------AUACA------------G-CU------GAGGAGU Acanthamoeba_castellanii -C--U----A------AAAUU------------A-UU-------AAAAAU Pilostyles_thurberi -U--A----U------AUAAG------------A-AU----C-UACCAUU Chondrus_crispus ----------------ACAUU---------------U----------A-- Toxoplasma_gondii -U--A-----------AACGC------------A-AU-------AGUGUU Neurospora_crassa -C--U----U------AGGCA------------C-CU----GUUGAAAGG Podospora_anserina -A--G----UAUU---AUGGUUUUUUGU-----A-CU--ACC-UAAAAGU Penicillium_chrysogenum -C--U----U------AUAAC-------------------------C--- Emericella_nidulans -C--U----U------AUAAA------------------------AA--- Saccharomyces_cerevisiae -U--U----U------AUAUA------------A-UA----A-AAAGGAU Williopsis_saturnus_var._mrakii -U--------------UUAAA--------------UG----A-GGAAUA- Pedinomonas_minor -U--U-----------CAAUU--------------UU----------AG- Plasmodium_falciparum -C--U----A------UAAGC------------G-CA------AAAAUAU Babesia_bovis -U--U----U------AUACUA-----------A-UU--CUC-UUUAAGU Tetrahymena_pyriformis -U--U---AUA-----AUAAAC-----------A-AU--C-A-UAUAAUU Suillus_sinuspaulianus -U--G----A------AUAAAA--------------U------AAAAA-- Paramecium_tetraurelia -G--C----C------ACCCAA-----------A-AA--A-A-AUUUUUU Dictyostelium_discoideum -C--A----G------AAUAAA-----------------A-A-GAAA--- Physarum_polycephalum -G--U----G------CUAACGC----------U-UG--A-U-UCUAUAA Pylaiella_littoralis -G--G----AG-----AAAAAA-----------A-----G-G-GAAA--U Prototheca_wickerhamii -U