PMFastR » Color Maps

Color Maps, Greengenes Comparion

We reassembled the GreenGenes core set, which comprises of 4290 16S rRNA sequences. We used the E. Coli sequences with structure as the alignment seed. We then visualized the new alignment using both stack coloring and base coloring. Stack coloring colors paired bases in the reference sequence the same shade. Base coloring uses four colors to visualize the sequence consistency.

PMFastR Greengenes
Pair Coloring

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Base Coloring

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